sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | clustalx 2.1+lgpl-8 (arm64) Tue, 28 Jan 2020 12:00:22 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-8 Source Version: 2.1+lgpl-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-0fe985f3-0197-411b-befe-84b0830509bd' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-yvRsYJ/resolver-wPIPG1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-01-28-0814.59.pdiff [7131 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-01-28-0814.59.pdiff [7131 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-01-28-0814.59.pdiff [8062 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-01-28-0814.59.pdiff [8062 B] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8059 kB] Fetched 8272 kB in 2s (4284 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (dsc) [2079 B] Get:2 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (tar) [342 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (diff) [14.9 kB] Fetched 359 kB in 0s (8004 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-yvRsYJ/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-yvRsYJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [419 B] Get:5 copy:/<>/apt_archive ./ Packages [508 B] Fetched 1884 B in 0s (124 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libavahi-client3 libavahi-client3:arm64 libavahi-common-data libavahi-common-data:arm64 libavahi-common3 libavahi-common3:arm64 libblkid1:arm64 libbrotli1 libbsd0 libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcap2 libcap2-bin libclang1-8 libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcups2 libcups2:arm64 libdbus-1-3 libdbus-1-3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:arm64 libdrm-amdgpu1 libdrm-amdgpu1:arm64 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:arm64 libdrm-radeon1 libdrm-radeon1:arm64 libdrm2 libdrm2:arm64 libedit2 libedit2:arm64 libegl-dev:arm64 libegl-mesa0 libegl-mesa0:arm64 libegl1 libegl1:arm64 libelf1 libelf1:arm64 libevdev2 libevdev2:arm64 libexpat1 libexpat1:arm64 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:arm64 libfreetype6 libfreetype6:arm64 libgbm1 libgbm1:arm64 libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libgcrypt20:arm64 libgl-dev:arm64 libgl1 libgl1:arm64 libgl1-mesa-dri libgl1-mesa-dri:arm64 libglapi-mesa libglapi-mesa:arm64 libglib2.0-0 libglib2.0-0:arm64 libglu1-mesa:arm64 libglu1-mesa-dev:arm64 libglvnd0 libglvnd0:arm64 libglx-dev:arm64 libglx-mesa0 libglx-mesa0:arm64 libglx0 libglx0:arm64 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgraphite2-3 libgraphite2-3:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:arm64 libharfbuzz0b libharfbuzz0b:arm64 libhogweed5:arm64 libhyphen0 libice6 libice6:arm64 libicu63 libicu63:arm64 libidn2-0:arm64 libinput-bin libinput10 libinput10:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg62-turbo libjpeg62-turbo:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libllvm8 libllvm9 libllvm9:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblz4-1:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmount1:arm64 libmtdev1 libmtdev1:arm64 libnettle7:arm64 liborc-0.4-0 libp11-kit0:arm64 libpciaccess0 libpcre2-16-0 libpcre2-16-0:arm64 libpcre2-8-0:arm64 libpcre3:arm64 libpipeline1 libpng16-16 libpng16-16:arm64 libpthread-stubs0-dev:arm64 libqt5concurrent5:arm64 libqt5core5a libqt5core5a:arm64 libqt5dbus5 libqt5dbus5:arm64 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:arm64 libqt5help5 libqt5network5 libqt5network5:arm64 libqt5positioning5 libqt5printsupport5 libqt5printsupport5:arm64 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:arm64 libqt5sql5-sqlite libqt5test5:arm64 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:arm64 libqt5xml5 libqt5xml5:arm64 libselinux1:arm64 libsensors-config libsensors5 libsensors5:arm64 libsigsegv2 libsm6 libsm6:arm64 libsqlite3-0 libssl1.1 libssl1.1:arm64 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsystemd0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libudev1:arm64 libunistring2:arm64 libuuid1:arm64 libvulkan-dev:arm64 libvulkan1:arm64 libwacom-common libwacom2 libwacom2:arm64 libwayland-client0 libwayland-client0:arm64 libwayland-server0 libwayland-server0:arm64 libwebp6 libwoff1 libx11-6 libx11-6:arm64 libx11-data libx11-dev:arm64 libx11-xcb1 libx11-xcb1:arm64 libxau-dev:arm64 libxau6 libxau6:arm64 libxcb-dri2-0 libxcb-dri2-0:arm64 libxcb-dri3-0 libxcb-dri3-0:arm64 libxcb-glx0 libxcb-glx0:arm64 libxcb-icccm4 libxcb-icccm4:arm64 libxcb-image0 libxcb-image0:arm64 libxcb-keysyms1 libxcb-keysyms1:arm64 libxcb-present0 libxcb-present0:arm64 libxcb-randr0 libxcb-randr0:arm64 libxcb-render-util0 libxcb-render-util0:arm64 libxcb-render0 libxcb-render0:arm64 libxcb-shape0 libxcb-shape0:arm64 libxcb-shm0 libxcb-shm0:arm64 libxcb-sync1 libxcb-sync1:arm64 libxcb-util0 libxcb-util0:arm64 libxcb-xfixes0 libxcb-xfixes0:arm64 libxcb-xinerama0 libxcb-xinerama0:arm64 libxcb-xinput0 libxcb-xinput0:arm64 libxcb-xkb1 libxcb-xkb1:arm64 libxcb1 libxcb1:arm64 libxcb1-dev:arm64 libxdamage1 libxdamage1:arm64 libxdmcp-dev:arm64 libxdmcp6 libxdmcp6:arm64 libxext-dev:arm64 libxext6 libxext6:arm64 libxfixes3 libxfixes3:arm64 libxkbcommon-x11-0 libxkbcommon-x11-0:arm64 libxkbcommon0 libxkbcommon0:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender1 libxrender1:arm64 libxshmfence1 libxshmfence1:arm64 libxslt1.1 libxxf86vm1 libxxf86vm1:arm64 libyaml-perl libz3-4 libz3-4:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:arm64 qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:arm64 qtbase5-dev-tools qtchooser qttools5-dev-tools sensible-utils ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 cups-common cups-common:arm64 rng-tools:arm64 gnutls-bin:arm64 krb5-doc krb5-user krb5-doc:arm64 krb5-user:arm64 libvisual-0.4-plugins gstreamer1.0-tools pciutils libthai0 libthai0:arm64 qt5-image-formats-plugins qtwayland5 qt5-image-formats-plugins:arm64 qtwayland5:arm64 qt5-qmltooling-plugins lm-sensors lm-sensors:arm64 libstdc++-9-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:arm64 libxcb-doc:arm64 libxext-doc:arm64 libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl qt5-doc default-libmysqlclient-dev:arm64 firebird-dev:arm64 libpq-dev:arm64 libsqlite3-dev:arm64 unixodbc-dev:arm64 Recommended packages: curl | wget | lynx libpam-cap dbus dbus:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libglib2.0-data:arm64 shared-mime-info:arm64 xdg-user-dirs:arm64 libgpg-error-l10n:arm64 gstreamer1.0-plugins-base krb5-locales krb5-locales:arm64 qttranslations5-l10n qttranslations5-l10n:arm64 libqt5svg5 qt5-gtk-platformtheme libqt5svg5:arm64 qt5-gtk-platformtheme:arm64 geoclue-2.0 libqt5sql5-sqlite:arm64 | libqt5sql5-mysql:arm64 | libqt5sql5-odbc:arm64 | libqt5sql5-psql:arm64 | libqt5sql5-tds:arm64 | libqt5sql5-ibase:arm64 libltdl-dev uuid-runtime:arm64 mesa-vulkan-drivers:arm64 | vulkan-icd:arm64 libwacom-bin libwacom-bin:arm64 libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl libqt5opengl5-dev:arm64 The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libavahi-client3 libavahi-client3:arm64 libavahi-common-data libavahi-common-data:arm64 libavahi-common3 libavahi-common3:arm64 libblkid1:arm64 libbrotli1 libbsd0 libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcap2 libcap2-bin libclang1-8 libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcups2 libcups2:arm64 libdbus-1-3 libdbus-1-3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:arm64 libdrm-amdgpu1 libdrm-amdgpu1:arm64 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:arm64 libdrm-radeon1 libdrm-radeon1:arm64 libdrm2 libdrm2:arm64 libedit2 libedit2:arm64 libegl-dev:arm64 libegl-mesa0 libegl-mesa0:arm64 libegl1 libegl1:arm64 libelf1 libelf1:arm64 libevdev2 libevdev2:arm64 libexpat1 libexpat1:arm64 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:arm64 libfreetype6 libfreetype6:arm64 libgbm1 libgbm1:arm64 libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libgcrypt20:arm64 libgl-dev:arm64 libgl1 libgl1:arm64 libgl1-mesa-dri libgl1-mesa-dri:arm64 libglapi-mesa libglapi-mesa:arm64 libglib2.0-0 libglib2.0-0:arm64 libglu1-mesa:arm64 libglu1-mesa-dev:arm64 libglvnd0 libglvnd0:arm64 libglx-dev:arm64 libglx-mesa0 libglx-mesa0:arm64 libglx0 libglx0:arm64 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgraphite2-3 libgraphite2-3:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:arm64 libharfbuzz0b libharfbuzz0b:arm64 libhogweed5:arm64 libhyphen0 libice6 libice6:arm64 libicu63 libicu63:arm64 libidn2-0:arm64 libinput-bin libinput10 libinput10:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg62-turbo libjpeg62-turbo:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libllvm8 libllvm9 libllvm9:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblz4-1:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmount1:arm64 libmtdev1 libmtdev1:arm64 libnettle7:arm64 liborc-0.4-0 libp11-kit0:arm64 libpciaccess0 libpcre2-16-0 libpcre2-16-0:arm64 libpcre2-8-0:arm64 libpcre3:arm64 libpipeline1 libpng16-16 libpng16-16:arm64 libpthread-stubs0-dev:arm64 libqt5concurrent5:arm64 libqt5core5a libqt5core5a:arm64 libqt5dbus5 libqt5dbus5:arm64 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:arm64 libqt5help5 libqt5network5 libqt5network5:arm64 libqt5positioning5 libqt5printsupport5 libqt5printsupport5:arm64 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:arm64 libqt5sql5-sqlite libqt5test5:arm64 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:arm64 libqt5xml5 libqt5xml5:arm64 libselinux1:arm64 libsensors-config libsensors5 libsensors5:arm64 libsigsegv2 libsm6 libsm6:arm64 libsqlite3-0 libssl1.1 libssl1.1:arm64 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsystemd0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libudev1:arm64 libunistring2:arm64 libuuid1:arm64 libvulkan-dev:arm64 libvulkan1:arm64 libwacom-common libwacom2 libwacom2:arm64 libwayland-client0 libwayland-client0:arm64 libwayland-server0 libwayland-server0:arm64 libwebp6 libwoff1 libx11-6 libx11-6:arm64 libx11-data libx11-dev:arm64 libx11-xcb1 libx11-xcb1:arm64 libxau-dev:arm64 libxau6 libxau6:arm64 libxcb-dri2-0 libxcb-dri2-0:arm64 libxcb-dri3-0 libxcb-dri3-0:arm64 libxcb-glx0 libxcb-glx0:arm64 libxcb-icccm4 libxcb-icccm4:arm64 libxcb-image0 libxcb-image0:arm64 libxcb-keysyms1 libxcb-keysyms1:arm64 libxcb-present0 libxcb-present0:arm64 libxcb-randr0 libxcb-randr0:arm64 libxcb-render-util0 libxcb-render-util0:arm64 libxcb-render0 libxcb-render0:arm64 libxcb-shape0 libxcb-shape0:arm64 libxcb-shm0 libxcb-shm0:arm64 libxcb-sync1 libxcb-sync1:arm64 libxcb-util0 libxcb-util0:arm64 libxcb-xfixes0 libxcb-xfixes0:arm64 libxcb-xinerama0 libxcb-xinerama0:arm64 libxcb-xinput0 libxcb-xinput0:arm64 libxcb-xkb1 libxcb-xkb1:arm64 libxcb1 libxcb1:arm64 libxcb1-dev:arm64 libxdamage1 libxdamage1:arm64 libxdmcp-dev:arm64 libxdmcp6 libxdmcp6:arm64 libxext-dev:arm64 libxext6 libxext6:arm64 libxfixes3 libxfixes3:arm64 libxkbcommon-x11-0 libxkbcommon-x11-0:arm64 libxkbcommon0 libxkbcommon0:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender1 libxrender1:arm64 libxshmfence1 libxshmfence1:arm64 libxslt1.1 libxxf86vm1 libxxf86vm1:arm64 libyaml-perl libz3-4 libz3-4:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:arm64 qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:arm64 qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-main-dummy:arm64 sensible-utils ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:arm64 0 upgraded, 363 newly installed, 0 to remove and 0 not upgraded. Need to get 244 MB of archives. After this operation, 1711 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-1+b1 [1319 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2 amd64 1:2.27-1 [18.4 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2-bin amd64 1:2.27-1 [30.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.16.2-2 [2166 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [189 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 iso-codes all 4.4-1 [2749 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-2 [2087 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-1 [292 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libdouble-conversion3 amd64 3.1.5-5 [40.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-16-0 amd64 10.34-7 [219 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5core5a amd64 5.12.5+dfsg-7 [2028 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.1-2 [392 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-2+b1 [347 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-2+b1 [405 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.100-4 [14.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm2 amd64 2.4.100-4 [40.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libglvnd0 amd64 1.3.0-7 [51.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-server0 amd64 1.17.0-1+b1 [32.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libgbm1 amd64 19.3.2-1 [70.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libglapi-mesa amd64 19.3.2-1 [69.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-client0 amd64 1.17.0-1+b1 [26.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.8-1 [190 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-3 [137 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri2-0 amd64 1.13.1-3 [101 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri3-0 amd64 1.13.1-3 [100 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-present0 amd64 1.13.1-3 [99.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-sync1 amd64 1.13.1-3 [103 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xfixes0 amd64 1.13.1-3 [103 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libegl-mesa0 amd64 19.3.2-1 [139 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libegl1 amd64 1.3.0-7 [34.1 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.8-1 [298 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.8-1 [756 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-glx0 amd64 1.13.1-3 [116 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxdamage1 amd64 1:1.1.5-1 [15.7 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.100-4 [28.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-intel1 amd64 2.4.100-4 [70.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.100-4 [26.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.100-4 [29.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm9 amd64 1:9.0.1-8 [15.0 MB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.6.0-2 [32.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-2 [53.1 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1-mesa-dri amd64 19.3.2-1 [9187 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libglx-mesa0 amd64 19.3.2-1 [182 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libglx0 amd64 1.3.0-7 [34.6 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1 amd64 1.3.0-7 [88.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.13-11 [80.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.4-1 [1360 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libevdev2 amd64 1.8.0+dfsg-2 [33.1 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libmtdev1 amd64 1.1.5-1.1 [22.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libgudev-1.0-0 amd64 233-1 [13.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom-common all 1.1-2 [41.9 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom2 amd64 1.1-2 [20.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libinput-bin amd64 1.14.3-1 [17.5 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libinput10 amd64 1.14.3-1 [115 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libdbus-1-3 amd64 1.12.16-2 [214 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5dbus5 amd64 5.12.5+dfsg-7 [239 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5network5 amd64 5.12.5+dfsg-7 [703 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.13.1-3 [99.2 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-randr0 amd64 1.13.1-3 [110 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.13.1-3 [109 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shape0 amd64 1.13.1-3 [99.6 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinerama0 amd64 1.13.1-3 [98.9 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinput0 amd64 1.13.1-3 [124 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xkb1 amd64 1.13.1-3 [124 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 xkb-data all 2.26-2 [681 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon0 amd64 0.9.1-1 [122 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon-x11-0 amd64 0.9.1-1 [39.4 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5gui5 amd64 5.12.5+dfsg-7 [2986 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5positioning5 amd64 5.12.5+dfsg-2+b1 [200 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common-data amd64 0.7-5 [122 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common3 amd64 0.7-5 [54.6 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-client3 amd64 0.7-5 [58.2 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libcups2 amd64 2.3.1-2 [348 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5widgets5 amd64 5.12.5+dfsg-7 [2324 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5printsupport5 amd64 5.12.5+dfsg-7 [224 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qml5 amd64 5.12.5-5 [1442 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quick5 amd64 5.12.5-5 [1342 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sensors5 amd64 5.12.5-2+b1 [117 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webchannel5 amd64 5.12.5-2 [52.1 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.0+really3.30.1+fossil191229-1 [655 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libwoff1 amd64 1.0.2-1+b1 [42.4 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 libxslt1.1 amd64 1.1.32-2.2 [236 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha3-6 [12.1 MB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-25 [195 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-25 [34.2 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.10-10 [89.7 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.29-9 [2455 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libgpg-error0 arm64 1.36-7 [68.8 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libgcrypt20 arm64 1.8.5-3 [488 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 liblz4-1 arm64 1.9.2-2 [53.9 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.4-1+b1 [149 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libsystemd0 arm64 244.1-1 [326 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.33.90.20200122-2 [2787 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-9 [2636 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-25 [1677 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-25 [10.7 MB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-21cross1 [195 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-21cross1 [6540 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.29-9cross1 [1242 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-21cross1 [34.1 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-21cross1 [76.5 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-21cross1 [24.2 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-21cross1 [8584 B] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-21cross1 [347 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-21cross1 [121 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-21cross1 [267 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-21cross1 [415 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-21cross1 [117 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-21cross1 [885 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-21cross1 [6908 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:172 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.4.8-1cross1 [1126 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.29-9cross1 [2263 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-21cross1 [1635 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-21cross1 [7120 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:177 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:191 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-25 [354 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-25 [8832 B] Get:206 http://debian.oregonstate.edu/debian unstable/main arm64 libavahi-common-data arm64 0.7-5 [122 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main arm64 libavahi-common3 arm64 0.7-5 [53.5 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main arm64 libdbus-1-3 arm64 1.12.16-2 [204 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main arm64 libavahi-client3 arm64 0.7-5 [57.0 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main arm64 libblkid1 arm64 2.34-0.1 [188 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main arm64 libbsd0 arm64 0.10.0-1 [105 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.4.13-1 [1038 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.10-10 [111 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.29-9 [2274 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm8 amd64 1:8.0.1-7 [13.8 MB] Get:216 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-8 amd64 1:8.0.1-7 [6244 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.45.5-2 [71.2 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.1.2+dfsg-4 [226 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle7 arm64 3.5.1+really3.5.1-2 [233 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed5 arm64 3.5.1+really3.5.1-2 [135 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-2 [381 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.2.0-2 [81.8 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main arm64 libffi7 arm64 3.3-3 [20.4 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.23.19-2 [315 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.15.0-2 [52.7 kB] Get:226 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.6.11.1-2 [1108 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.17-6 [63.8 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.17-6 [117 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1d-2 [1377 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.17-6 [350 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.17-6 [148 kB] Get:233 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1+b1 [88.4 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main arm64 libcups2 arm64 2.3.1-2 [332 kB] Get:235 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-25 [455 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main arm64 libdouble-conversion3 arm64 3.1.5-5 [36.8 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm2 arm64 2.4.100-4 [40.7 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.100-4 [27.7 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-nouveau2 arm64 2.4.100-4 [25.7 kB] Get:240 http://debian.oregonstate.edu/debian unstable/main arm64 libdrm-radeon1 arm64 2.4.100-4 [28.7 kB] Get:241 http://debian.oregonstate.edu/debian unstable/main arm64 libtinfo6 arm64 6.1+20191019-1 [328 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main arm64 libedit2 arm64 3.1-20191231-1 [91.3 kB] Get:243 http://debian.oregonstate.edu/debian unstable/main arm64 libglvnd0 arm64 1.3.0-7 [41.6 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main arm64 libexpat1 arm64 2.2.9-1 [81.6 kB] Get:245 http://debian.oregonstate.edu/debian unstable/main arm64 libwayland-server0 arm64 1.17.0-1+b1 [32.1 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main arm64 libgbm1 arm64 19.3.2-1 [69.7 kB] Get:247 http://debian.oregonstate.edu/debian unstable/main arm64 libglapi-mesa arm64 19.3.2-1 [78.1 kB] Get:248 http://debian.oregonstate.edu/debian unstable/main arm64 libwayland-client0 arm64 1.17.0-1+b1 [26.2 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-xcb1 arm64 2:1.6.8-1 [190 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb1 arm64 1.13.1-3 [135 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-dri2-0 arm64 1.13.1-3 [101 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-dri3-0 arm64 1.13.1-3 [100 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-present0 arm64 1.13.1-3 [99.2 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-sync1 arm64 1.13.1-3 [103 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xfixes0 arm64 1.13.1-3 [103 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get:259 http://debian.oregonstate.edu/debian unstable/main arm64 libegl-mesa0 arm64 19.3.2-1 [132 kB] Get:260 http://debian.oregonstate.edu/debian unstable/main arm64 libegl1 arm64 1.3.0-7 [33.4 kB] Get:261 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-6 arm64 2:1.6.8-1 [735 kB] Get:262 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-glx0 arm64 1.13.1-3 [116 kB] Get:263 http://debian.oregonstate.edu/debian unstable/main arm64 libxfixes3 arm64 1:5.0.3-1 [21.0 kB] Get:264 http://debian.oregonstate.edu/debian unstable/main arm64 libxdamage1 arm64 1:1.1.5-1 [15.6 kB] Get:265 http://debian.oregonstate.edu/debian unstable/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get:267 http://debian.oregonstate.edu/debian unstable/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get:268 http://debian.oregonstate.edu/debian unstable/main arm64 libz3-4 arm64 4.8.7-4 [5890 kB] Get:269 http://debian.oregonstate.edu/debian unstable/main arm64 libllvm9 arm64 1:9.0.1-8 [12.4 MB] Get:270 http://debian.oregonstate.edu/debian unstable/main arm64 libsensors5 arm64 1:3.6.0-2 [52.2 kB] Get:271 http://debian.oregonstate.edu/debian unstable/main arm64 libgl1-mesa-dri arm64 19.3.2-1 [6051 kB] Get:272 http://debian.oregonstate.edu/debian unstable/main arm64 libglx-mesa0 arm64 19.3.2-1 [183 kB] Get:273 http://debian.oregonstate.edu/debian unstable/main arm64 libglx0 arm64 1.3.0-7 [31.7 kB] Get:274 http://debian.oregonstate.edu/debian unstable/main arm64 libgl1 arm64 1.3.0-7 [91.1 kB] Get:275 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:276 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:277 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:278 http://debian.oregonstate.edu/debian unstable/main arm64 libxau-dev arm64 1:1.0.8-1+b2 [22.8 kB] Get:279 http://debian.oregonstate.edu/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get:280 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:281 http://debian.oregonstate.edu/debian unstable/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get:282 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb1-dev arm64 1.13.1-3 [175 kB] Get:283 http://debian.oregonstate.edu/debian unstable/main arm64 libx11-dev arm64 2:1.6.8-1 [815 kB] Get:284 http://debian.oregonstate.edu/debian unstable/main arm64 libglx-dev arm64 1.3.0-7 [16.2 kB] Get:285 http://debian.oregonstate.edu/debian unstable/main arm64 libgl-dev arm64 1.3.0-7 [100 kB] Get:286 http://debian.oregonstate.edu/debian unstable/main arm64 libegl-dev arm64 1.3.0-7 [19.1 kB] Get:287 http://debian.oregonstate.edu/debian unstable/main arm64 libevdev2 arm64 1.8.0+dfsg-2 [31.4 kB] Get:288 http://debian.oregonstate.edu/debian unstable/main arm64 libpng16-16 arm64 1.6.37-1 [286 kB] Get:289 http://debian.oregonstate.edu/debian unstable/main arm64 libfreetype6 arm64 2.10.1-2 [367 kB] Get:290 http://debian.oregonstate.edu/debian unstable/main arm64 libuuid1 arm64 2.34-0.1 [77.8 kB] Get:291 http://debian.oregonstate.edu/debian unstable/main arm64 libfontconfig1 arm64 2.13.1-2+b1 [344 kB] Get:292 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-25 [78.6 kB] Get:293 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-25 [24.7 kB] Get:294 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-25 [122 kB] Get:295 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-25 [274 kB] Get:296 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-25 [117 kB] Get:297 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-25 [886 kB] Get:298 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-8-0 arm64 10.34-7 [208 kB] Get:299 http://debian.oregonstate.edu/debian unstable/main arm64 libselinux1 arm64 3.0-1 [83.2 kB] Get:300 http://debian.oregonstate.edu/debian unstable/main arm64 libmount1 arm64 2.34-0.1 [201 kB] Get:301 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre3 arm64 2:8.39-12+b1 [317 kB] Get:302 http://debian.oregonstate.edu/debian unstable/main arm64 libglib2.0-0 arm64 2.62.4-1+b1 [1236 kB] Get:303 http://debian.oregonstate.edu/debian unstable/main arm64 libglu1-mesa arm64 9.0.1-1 [146 kB] Get:304 http://debian.oregonstate.edu/debian unstable/main arm64 libglu1-mesa-dev arm64 9.0.1-1 [186 kB] Get:305 http://debian.oregonstate.edu/debian unstable/main arm64 libgraphite2-3 arm64 1.3.13-11 [75.3 kB] Get:306 http://debian.oregonstate.edu/debian unstable/main arm64 libudev1 arm64 244.1-1 [156 kB] Get:307 http://debian.oregonstate.edu/debian unstable/main arm64 libgudev-1.0-0 arm64 233-1 [13.1 kB] Get:308 http://debian.oregonstate.edu/debian unstable/main arm64 libharfbuzz0b arm64 2.6.4-1 [1323 kB] Get:309 http://debian.oregonstate.edu/debian unstable/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get:310 http://debian.oregonstate.edu/debian unstable/main arm64 libicu63 arm64 63.2-2 [8157 kB] Get:311 http://debian.oregonstate.edu/debian unstable/main arm64 libmtdev1 arm64 1.1.5-1.1 [22.1 kB] Get:312 http://debian.oregonstate.edu/debian unstable/main arm64 libwacom2 arm64 1.1-2 [19.1 kB] Get:313 http://debian.oregonstate.edu/debian unstable/main arm64 libinput10 arm64 1.14.3-1 [104 kB] Get:314 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get:315 http://debian.oregonstate.edu/debian unstable/main arm64 libpcre2-16-0 arm64 10.34-7 [195 kB] Get:316 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5core5a arm64 5.12.5+dfsg-7 [1878 kB] Get:317 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5concurrent5 arm64 5.12.5+dfsg-7 [63.7 kB] Get:318 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5dbus5 arm64 5.12.5+dfsg-7 [227 kB] Get:319 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5xml5 amd64 5.12.5+dfsg-7 [136 kB] Get:320 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designer5 amd64 5.12.5-2+b1 [2785 kB] Get:321 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designercomponents5 amd64 5.12.5-2+b1 [725 kB] Get:322 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5network5 arm64 5.12.5+dfsg-7 [661 kB] Get:323 http://debian.oregonstate.edu/debian unstable/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get:324 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-icccm4 arm64 0.4.1-1.1 [26.9 kB] Get:325 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-shm0 arm64 1.13.1-3 [99.4 kB] Get:326 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-util0 arm64 0.3.8-3+b2 [22.5 kB] Get:327 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-image0 arm64 0.4.0-1+b2 [23.2 kB] Get:328 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b2 [16.0 kB] Get:329 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-randr0 arm64 1.13.1-3 [110 kB] Get:330 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-render0 arm64 1.13.1-3 [109 kB] Get:331 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-render-util0 arm64 0.3.9-1+b1 [17.5 kB] Get:332 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-shape0 arm64 1.13.1-3 [99.6 kB] Get:333 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xinerama0 arm64 1.13.1-3 [99.0 kB] Get:334 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xinput0 arm64 1.13.1-3 [124 kB] Get:335 http://debian.oregonstate.edu/debian unstable/main arm64 libxcb-xkb1 arm64 1.13.1-3 [123 kB] Get:336 http://debian.oregonstate.edu/debian unstable/main arm64 libxkbcommon0 arm64 0.9.1-1 [117 kB] Get:337 http://debian.oregonstate.edu/debian unstable/main arm64 libxkbcommon-x11-0 arm64 0.9.1-1 [39.0 kB] Get:338 http://debian.oregonstate.edu/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get:339 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5gui5 arm64 5.12.5+dfsg-7 [2705 kB] Get:340 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5 amd64 5.12.5+dfsg-7 [152 kB] Get:341 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5help5 amd64 5.12.5-2+b1 [141 kB] Get:342 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5widgets5 arm64 5.12.5+dfsg-7 [2200 kB] Get:343 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5printsupport5 arm64 5.12.5+dfsg-7 [216 kB] Get:344 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.12.5-5 [52.1 kB] Get:345 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5sql5 arm64 5.12.5+dfsg-7 [146 kB] Get:346 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.12.5+dfsg-7 [78.1 kB] Get:347 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5test5 arm64 5.12.5+dfsg-7 [151 kB] Get:348 http://debian.oregonstate.edu/debian unstable/main arm64 libqt5xml5 arm64 5.12.5+dfsg-7 [132 kB] Get:349 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-25 [1635 kB] Get:350 http://debian.oregonstate.edu/debian unstable/main arm64 libvulkan1 arm64 1.1.126.0-2 [90.5 kB] Get:351 http://debian.oregonstate.edu/debian unstable/main arm64 libvulkan-dev arm64 1.1.126.0-2 [472 kB] Get:352 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get:353 http://debian.oregonstate.edu/debian unstable/main arm64 libxext-dev arm64 2:1.3.3-1+b2 [104 kB] Get:354 http://debian.oregonstate.edu/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:355 http://debian.oregonstate.edu/debian unstable/main amd64 qdoc-qt5 amd64 5.12.5-2+b1 [513 kB] Get:356 http://debian.oregonstate.edu/debian unstable/main amd64 qhelpgenerator-qt5 amd64 5.12.5-2+b1 [72.8 kB] Get:357 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-assistant amd64 5.12.5-2+b1 [375 kB] Get:358 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-qmake-bin amd64 5.12.5+dfsg-7 [1014 kB] Get:359 http://debian.oregonstate.edu/debian unstable/main arm64 qt5-qmake arm64 5.12.5+dfsg-7 [228 kB] Get:360 http://debian.oregonstate.edu/debian unstable/main amd64 qtattributionsscanner-qt5 amd64 5.12.5-2+b1 [33.3 kB] Get:361 http://debian.oregonstate.edu/debian unstable/main amd64 qtbase5-dev-tools amd64 5.12.5+dfsg-7 [729 kB] Get:362 http://debian.oregonstate.edu/debian unstable/main arm64 qtbase5-dev arm64 5.12.5+dfsg-7 [1036 kB] Get:363 http://debian.oregonstate.edu/debian unstable/main amd64 qttools5-dev-tools amd64 5.12.5-2+b1 [1031 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 244 MB in 3s (73.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12778 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Setting up libdrm2:arm64 (2.4.100-4) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libmount1:arm64 (2.34-0.1) ... Setting up libxcb-randr0:amd64 (1.13.1-3) ... Setting up libxcb-randr0:arm64 (1.13.1-3) ... Setting up libxslt1.1:amd64 (1.1.32-2.2) ... Setting up build-essential (12.8) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libx11-6:arm64 (2:1.6.8-1) ... Setting up libharfbuzz0b:amd64 (2.6.4-1) ... Setting up libwacom2:amd64 (1.1-2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-5) ... Setting up libavahi-client3:arm64 (0.7-5) ... Setting up libllvm9:amd64 (1:9.0.1-8) ... Setting up libllvm9:arm64 (1:9.0.1-8) ... Setting up libdrm-amdgpu1:amd64 (2.4.100-4) ... Setting up libdrm-amdgpu1:arm64 (2.4.100-4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libllvm8:amd64 (1:8.0.1-7) ... Setting up libxcb-dri3-0:amd64 (1.13.1-3) ... Setting up libxcb-dri3-0:arm64 (1.13.1-3) ... Setting up libdrm-nouveau2:amd64 (2.4.100-4) ... Setting up libdrm-nouveau2:arm64 (2.4.100-4) ... Setting up gettext (0.19.8.1-10) ... Setting up libxcb1-dev:arm64 (1.13.1-3) ... Setting up libqt5sql5-sqlite:amd64 (5.12.5+dfsg-7) ... Setting up libubsan1-arm64-cross (9.2.1-21cross1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libgbm1:amd64 (19.3.2-1) ... Setting up libgbm1:arm64 (19.3.2-1) ... Setting up libglib2.0-0:arm64 (2.62.4-1+b1) ... /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: 47: /usr/lib/aarch64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:arm64.postinst: 50: /usr/lib/aarch64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.100-4) ... Setting up libdrm-radeon1:arm64 (2.4.100-4) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.100-4) ... Setting up libgl1-mesa-dri:amd64 (19.3.2-1) ... Setting up libgl1-mesa-dri:arm64 (19.3.2-1) ... Setting up libclang1-8 (1:8.0.1-7) ... Setting up libx11-dev:arm64 (2:1.6.8-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxext6:arm64 (2:1.3.3-1+b2) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-21cross1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.14.3-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-9-dev:arm64 (9.2.1-25) ... Setting up libegl-mesa0:amd64 (19.3.2-1) ... Setting up libegl-mesa0:arm64 (19.3.2-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up gcc-9-aarch64-linux-gnu (9.2.1-21cross1) ... Setting up libqt5core5a:arm64 (5.12.5+dfsg-7) ... Setting up libxext-dev:arm64 (2:1.3.3-1+b2) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcups2:amd64 (2.3.1-2) ... Setting up libcups2:arm64 (2.3.1-2) ... Setting up libqt5dbus5:arm64 (5.12.5+dfsg-7) ... Setting up libegl1:amd64 (1.3.0-7) ... Setting up libegl1:arm64 (1.3.0-7) ... Setting up libharfbuzz0b:arm64 (2.6.4-1) ... Setting up libstdc++-9-dev-arm64-cross (9.2.1-21cross1) ... Setting up libfontconfig1:amd64 (2.13.1-2+b1) ... Setting up libfontconfig1:arm64 (2.13.1-2+b1) ... Setting up libqt5test5:arm64 (5.12.5+dfsg-7) ... Setting up libqt5concurrent5:arm64 (5.12.5+dfsg-7) ... Setting up libgudev-1.0-0:arm64 (233-1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libinput10:amd64 (1.14.3-1) ... Setting up fontconfig (2.13.1-2+b1) ... Regenerating fonts cache... done. Setting up libxdamage1:amd64 (1:1.1.5-1) ... Setting up libxdamage1:arm64 (1:1.1.5-1) ... Setting up libstdc++-9-dev:arm64 (9.2.1-25) ... Setting up qdoc-qt5 (5.12.5-2+b1) ... Setting up po-debconf (1.0.21) ... Setting up libqt5network5:arm64 (5.12.5+dfsg-7) ... Setting up libqt5sql5:arm64 (5.12.5+dfsg-7) ... Setting up libqt5xml5:arm64 (5.12.5+dfsg-7) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-21cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libwacom2:arm64 (1.1-2) ... Setting up libinput10:arm64 (1.14.3-1) ... Setting up libglx-mesa0:amd64 (19.3.2-1) ... Setting up libglx-mesa0:arm64 (19.3.2-1) ... Setting up libglx0:amd64 (1.3.0-7) ... Setting up libglx0:arm64 (1.3.0-7) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libgl1:amd64 (1.3.0-7) ... Setting up libgl1:arm64 (1.3.0-7) ... Setting up libglx-dev:arm64 (1.3.0-7) ... Setting up libglu1-mesa:arm64 (9.0.1-1) ... Setting up libgl-dev:arm64 (1.3.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up libegl-dev:arm64 (1.3.0-7) ... Setting up libqt5gui5:amd64 (5.12.5+dfsg-7) ... Setting up libqt5gui5:arm64 (5.12.5+dfsg-7) ... Setting up libqt5widgets5:amd64 (5.12.5+dfsg-7) ... Setting up libqt5widgets5:arm64 (5.12.5+dfsg-7) ... Setting up libqt5help5:amd64 (5.12.5-2+b1) ... Setting up libqt5printsupport5:amd64 (5.12.5+dfsg-7) ... Setting up libqt5printsupport5:arm64 (5.12.5+dfsg-7) ... Setting up libglu1-mesa-dev:arm64 (9.0.1-1) ... Setting up qtbase5-dev:arm64 (5.12.5+dfsg-7) ... Setting up libqt5quick5:amd64 (5.12.5-5) ... Setting up dpkg-cross (2.6.15-3) ... Setting up libqt5designer5:amd64 (5.12.5-2+b1) ... Setting up qhelpgenerator-qt5 (5.12.5-2+b1) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha3-6) ... Setting up libqt5designercomponents5:amd64 (5.12.5-2+b1) ... Setting up libqt5quickwidgets5:amd64 (5.12.5-5) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up qt5-assistant (5.12.5-2+b1) ... Setting up qttools5-dev-tools (5.12.5-2+b1) ... Setting up debhelper (12.9) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.29-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.90.20200122-2 dpkg-dev_1.19.7 g++-9_9.2.1-25 gcc-8_8.3.0-26 gcc-9_9.2.1-25 libc6-dev_2.29-9 libstdc++-9-dev_9.2.1-25 libstdc++-9-dev-arm64-cross_9.2.1-21cross1 libstdc++6_9.2.1-25 libstdc++6-arm64-cross_9.2.1-21cross1 linux-libc-dev_5.4.13-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.90.20200122-2 binutils-aarch64-linux-gnu_2.33.90.20200122-2 binutils-common_2.33.90.20200122-2 binutils-x86-64-linux-gnu_2.33.90.20200122-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-26 cpp-9_9.2.1-25 cpp-9-aarch64-linux-gnu_9.2.1-21cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig_2.13.1-2+b1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1 g++-9_9.2.1-25 g++-9-aarch64-linux-gnu_9.2.1-21cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-26 gcc-8-base_8.3.0-26 gcc-9_9.2.1-25 gcc-9-aarch64-linux-gnu_9.2.1-21cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-21cross1 gcc-9-base_9.2.1-25 gcc-9-cross-base_9.2.1-21cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iso-codes_4.4-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-25 libasan5-arm64-cross_9.2.1-21cross1 libatomic1_9.2.1-25 libatomic1-arm64-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libavahi-client3_0.7-5 libavahi-common-data_0.7-5 libavahi-common3_0.7-5 libbinutils_2.33.90.20200122-2 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-9 libc-dev-bin_2.29-9 libc6_2.29-9 libc6-arm64-cross_2.29-9cross1 libc6-dev_2.29-9 libc6-dev-arm64-cross_2.29-9cross1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-25 libclang1-8_1:8.0.1-7 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.33.90.20200122-2 libctf0_2.33.90.20200122-2 libcups2_2.3.1-2 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.16-2 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdouble-conversion3_3.1.5-5 libdpkg-perl_1.19.7 libdrm-amdgpu1_2.4.100-4 libdrm-common_2.4.100-4 libdrm-intel1_2.4.100-4 libdrm-nouveau2_2.4.100-4 libdrm-radeon1_2.4.100-4 libdrm2_2.4.100-4 libedit2_3.1-20191231-1 libegl-dev_1.3.0-7 libegl-mesa0_19.3.2-1 libegl1_1.3.0-7 libelf1_0.176-1.1 libevdev2_1.8.0+dfsg-2 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2+b1 libfreetype6_2.10.1-2 libgbm1_19.3.2-1 libgcc-8-dev_8.3.0-26 libgcc-9-dev_9.2.1-25 libgcc-9-dev-arm64-cross_9.2.1-21cross1 libgcc1_1:9.2.1-25 libgcc1-arm64-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgl-dev_1.3.0-7 libgl1_1.3.0-7 libgl1-mesa-dri_19.3.2-1 libglapi-mesa_19.3.2-1 libglib2.0-0_2.62.4-1+b1 libglu1-mesa_9.0.1-1 libglu1-mesa-dev_9.0.1-1 libglvnd0_1.3.0-7 libglx-dev_1.3.0-7 libglx-mesa0_19.3.2-1 libglx0_1.3.0-7 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-25 libgomp1-arm64-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-11 libgssapi-krb5-2_1.17-6 libgstreamer-plugins-base1.0-0_1.16.2-2 libgstreamer1.0-0_1.16.2-2 libgudev-1.0-0_233-1 libharfbuzz0b_2.6.4-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhyphen0_2.8.8-7 libice6_2:1.0.9-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libinput-bin_1.14.3-1 libinput10_1.14.3-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_9.2.1-25 libitm1-arm64-cross_9.2.1-21cross1 libjpeg62-turbo_1:1.5.2-2+b1 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libllvm8_1:8.0.1-7 libllvm9_1:9.0.1-8 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-25 liblsan0-arm64-cross_9.2.1-21cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-26 libmtdev1_1.1.5-1.1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 liborc-0.4-0_1:0.4.31-1 libp11-kit0_0.23.19-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-16-0_10.34-7 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libpthread-stubs0-dev_0.4-1 libqt5concurrent5_5.12.5+dfsg-7 libqt5core5a_5.12.5+dfsg-7 libqt5dbus5_5.12.5+dfsg-7 libqt5designer5_5.12.5-2+b1 libqt5designercomponents5_5.12.5-2+b1 libqt5gui5_5.12.5+dfsg-7 libqt5help5_5.12.5-2+b1 libqt5network5_5.12.5+dfsg-7 libqt5positioning5_5.12.5+dfsg-2+b1 libqt5printsupport5_5.12.5+dfsg-7 libqt5qml5_5.12.5-5 libqt5quick5_5.12.5-5 libqt5quickwidgets5_5.12.5-5 libqt5sensors5_5.12.5-2+b1 libqt5sql5_5.12.5+dfsg-7 libqt5sql5-sqlite_5.12.5+dfsg-7 libqt5test5_5.12.5+dfsg-7 libqt5webchannel5_5.12.5-2 libqt5webkit5_5.212.0~alpha3-6 libqt5widgets5_5.12.5+dfsg-7 libqt5xml5_5.12.5+dfsg-7 libquadmath0_9.2.1-25 libseccomp2_2.4.2-2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsensors-config_1:3.6.0-2 libsensors5_1:3.6.0-2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.0+really3.30.1+fossil191229-1 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-25 libstdc++-9-dev-arm64-cross_9.2.1-21cross1 libstdc++6_9.2.1-25 libstdc++6-arm64-cross_9.2.1-21cross1 libsub-override-perl_0.09-2 libsystemd0_244.1-1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-25 libtsan0-arm64-cross_9.2.1-21cross1 libubsan1_9.2.1-25 libubsan1-arm64-cross_9.2.1-21cross1 libuchardet0_0.0.6-3 libudev1_244.1-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libvulkan-dev_1.1.126.0-2 libvulkan1_1.1.126.0-2 libwacom-common_1.1-2 libwacom2_1.1-2 libwayland-client0_1.17.0-1+b1 libwayland-server0_1.17.0-1+b1 libwebp6_0.6.1-2+b1 libwoff1_1.0.2-1+b1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libx11-dev_2:1.6.8-1 libx11-xcb1_2:1.6.8-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13.1-3 libxcb-dri3-0_1.13.1-3 libxcb-glx0_1.13.1-3 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1+b2 libxcb-keysyms1_0.4.0-1+b2 libxcb-present0_1.13.1-3 libxcb-randr0_1.13.1-3 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.13.1-3 libxcb-shape0_1.13.1-3 libxcb-shm0_1.13.1-3 libxcb-sync1_1.13.1-3 libxcb-util0_0.3.8-3+b2 libxcb-xfixes0_1.13.1-3 libxcb-xinerama0_1.13.1-3 libxcb-xinput0_1.13.1-3 libxcb-xkb1_1.13.1-3 libxcb1_1.13.1-3 libxcb1-dev_1.13.1-3 libxdamage1_1:1.1.5-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-1 libxkbcommon-x11-0_0.9.1-1 libxkbcommon0_0.9.1-1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxslt1.1_1.1.32-2.2 libxxf86vm1_1:1.1.4-1+b2 libyaml-perl_1.29-1 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.13-1 linux-libc-dev-arm64-cross_5.4.8-1cross1 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-20 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 qdoc-qt5_5.12.5-2+b1 qhelpgenerator-qt5_5.12.5-2+b1 qt5-assistant_5.12.5-2+b1 qt5-qmake_5.12.5+dfsg-7 qt5-qmake-bin_5.12.5+dfsg-7 qtattributionsscanner-qt5_5.12.5-2+b1 qtbase5-dev_5.12.5+dfsg-7 qtbase5-dev-tools_5.12.5+dfsg-7 qtchooser_66-2 qttools5-dev-tools_5.12.5-2+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 x11-common_1:7.7+20 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xkb-data_2.26-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clustalx Binary: clustalx Architecture: any Version: 2.1+lgpl-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.clustal.org/clustal2/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/clustalx Vcs-Git: https://salsa.debian.org/med-team/clustalx.git Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Package-List: clustalx deb science optional arch=any Checksums-Sha1: 63196a4e113a22e5e575f223d76b7406f4f70795 341649 clustalx_2.1+lgpl.orig.tar.gz d44f5076a1045f934c8186b52f55f50659882736 14908 clustalx_2.1+lgpl-8.debian.tar.xz Checksums-Sha256: e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 341649 clustalx_2.1+lgpl.orig.tar.gz cd42104fc76a3722f447927cf3f76eab0c82dae85db390994c3b98807cff6c29 14908 clustalx_2.1+lgpl-8.debian.tar.xz Files: 5b1f2f1cc8e939411ab0f934cafa072a 341649 clustalx_2.1+lgpl.orig.tar.gz d325a98eef7ecd7ac616d7d5045ef7d6 14908 clustalx_2.1+lgpl-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxy7eoRHHRpbGxlQGRl 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F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-8.dsc dpkg-source: info: extracting clustalx in /<> dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-0fe985f3-0197-411b-befe-84b0830509bd SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f moc_* dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure aarch64-linux-gnu-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] 48 | void AlignmentParameters::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 588 | for(i = 0; i < len && i < gapMask->size(); i++) | ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 645 | for (i = 0; i < len && i < _secStructMask->size();i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 652 | for(i = 0; i < len && i < ssMask.size(); i++) | ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] 781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) | ~~~~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] 170 | bool blackAndWhite; | ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] 161 | std::vector* selectedColoredRes; | ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] 65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) | ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 225 | for(unsigned int j = 0; j < lengthLongestSeq; j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 235 | if(code >= 0 && code < conservationPixmaps->size()) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 280 | if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) | ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] 215 | int codeForSpace = clustalw::userParameters->resIndex( | ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 333 | if(i < secStructPixmaps->size() && i < secStructInfo.size()) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 569 | if(selectedRes >= selectedColoredRes->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 689 | for(int j = 1; j <= strongGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 693 | for(int j = 1; j <= weakGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 700 | if((i + _fRes - 1 < (*alignment)[j].size()) && | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 701 | (i + _fRes - 1 < (*alignment)[_fSeq].size())) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 725 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 737 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 760 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 771 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 878 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 927 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1039 | for(int j = 0; j < aminoAcid.size(); j++) | ~~^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignOutputFileNames.cpp:23: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from BootstrapTreeDialog.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] 74 | // tr("colorrules not found in the parameter file, using\ | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 85 | QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 160 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] 174 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] 157 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] 158 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 197 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] 211 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] 194 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] 195 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 229 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 238 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | if(colorNum > 0 && colorNum - 1 < colorPar.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void ColumnScoreParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function ‘std::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 147 | catch(ifstream::failure e) | ^ HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] 61 | int i, number, nlines; | ^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 180 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 198 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void LowScoringSegParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] 198 | void MainWindow::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] 1454 | void MainWindow::writeViewer1AsPostscript(int type) | ~~~~^~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] 74 | void PairwiseParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(res.isLetter() && resNumber.size() > i - data->firstSeq) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 307 | if(res.isLetter() && resNumber.size() > seq) | ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 421 | if(res.isLetter() && resNumber.size() > i) | ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] 55 | int err; | ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] 73 | int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] 74 | int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 587 | if(data->nameHeader.size() > ix) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 730 | for(i = fr; i <= lr && i < ruler.length(); i++) | ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] 781 | int psX, psY, curveBottom; | ^~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] 375 | QRect redrawRect = event->rect(); | ^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from TreeOutputFileNames.cpp:14: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from /usr/aarch64-linux-gnu/include/c++/9/thread:39, from /usr/aarch64-linux-gnu/include/c++/9/future:39, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 162 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 837 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] 1715 | SeqArray::iterator posToAddTo = sectionToRealign.begin(); | ^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 512 | bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 535 | string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 673 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 868 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1027 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1156 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1445 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1560 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2095 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2102 | catch(exception e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’: clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2351 | catch(VectorOutOfRange e) | ^ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 155 | auto_ptr fileParser; // Means we dont need to delete it! | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 426 | void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)’: clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 555 | catch(exception ex) | ^~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 34 | vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 199 | Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 444 | void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] 446 | int &structPenalties, int length) | ~~~~^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 240 | void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function ‘std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds] 106 | delim[1] = 0; | ~~~~~~~^ clustalW/general/ClustalWResources.cpp:104:10: note: while referencing ‘delim’ 104 | char delim[1]; | ^~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] 33 | UserParameters::UserParameters(bool log) | ~~~~~^~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 251 | int n; | ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] 519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 183 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 221 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’: clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 41 | catch(bad_alloc) | ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] 520 | clustalObj->getHelp('C'); | ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here 521 | case 'Q': | ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1190 | system(lin1.c_str()); | ~~~~~~^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 170 | int count; | ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] 231 | tmpnam (buffer); | ~~~~~~~^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] 340 | int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] 359 | string phylipName) | ~~~~~~~^~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function ‘void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)’: clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] 372 | if ((ix < 0) || (ix > _maxAA)) | ~~~^~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1657 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1717 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1103 | return (maxRes); | ^ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | auto_ptr Tree::createSets(int firstSeq, int lastSeq) | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 280 | auto_ptr progAlignSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 31 | auto_ptr | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 103 | auto_ptr | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 195 | auto_ptr | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 200 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 208 | auto_ptr | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 214 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 439 | auto_ptr | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 445 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 485 | auto_ptr | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 490 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 503 | auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 506 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 17 | auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 21 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 27 | auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -dM -E -o moc_predefs.h /usr/lib/aarch64-linux-gnu/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:9: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from AlignOutputFileNames.h:9, from moc_AlignOutputFileNames.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:9: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from BootstrapTreeDialog.h:10, from moc_BootstrapTreeDialog.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/bits/locale_conv.h:41, from /usr/aarch64-linux-gnu/include/c++/9/locale:43, from /usr/aarch64-linux-gnu/include/c++/9/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:9: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from TreeOutputFileNames.h:9, from moc_TreeOutputFileNames.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtXml -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/aarch64-linux-gnu/include/c++/9 -I/usr/aarch64-linux-gnu/include/c++/9/aarch64-linux-gnu -I/usr/aarch64-linux-gnu/include/c++/9/backward -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include -I/usr/lib/gcc-cross/aarch64-linux-gnu/9/include-fixed -I/usr/aarch64-linux-gnu/include -I/usr/include/aarch64-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp aarch64-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:9: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/9/memory:80, from WritePostscriptFile.h:9, from moc_WritePostscriptFile.cpp:9: /usr/aarch64-linux-gnu/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o /usr/lib/aarch64-linux-gnu/libQt5Widgets.so /usr/lib/aarch64-linux-gnu/libQt5Gui.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so /usr/lib/aarch64-linux-gnu/libQt5Core.so /usr/lib/aarch64-linux-gnu/libGL.so -lpthread /usr/lib/gcc-cross/aarch64-linux-gnu/9/../../../../aarch64-linux-gnu/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-8_arm64.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-8_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../clustalx_2.1+lgpl-8_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-01-28T12:06:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-8_arm64.changes: ---------------------------------- Format: 1.8 Date: Sun, 24 Feb 2019 20:04:40 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.1+lgpl-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Closes: 923120 Changes: clustalx (2.1+lgpl-8) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. . [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_configure pass cross flags to qmake. Closes: #923120 . [ Andreas Tille ] * Standards-Version: 4.3.0 Checksums-Sha1: b90828f841636bc4352b27df9785499d9fff2449 13073920 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 13eebe0ec1e31895ab3aab9858e53b3cfa7a2dd0 9554 clustalx_2.1+lgpl-8_arm64.buildinfo 65dedab862178a42c5860a006e1abb91bd4d05c3 390888 clustalx_2.1+lgpl-8_arm64.deb Checksums-Sha256: 092d0c8f843df92592923612c54eea80b1f725616ccbba8e79fb65958417ac65 13073920 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 2852c589b3f0fe5f29c03d2d6be478804ff03b590fe79cb192f6d0a879bad57b 9554 clustalx_2.1+lgpl-8_arm64.buildinfo 062704966d0fa948455c302571968ba899411e19578bf3e8e798ace0dddab819 390888 clustalx_2.1+lgpl-8_arm64.deb Files: 747f27a5e530ce5db1bd1aa729ed6c47 13073920 debug optional clustalx-dbgsym_2.1+lgpl-8_arm64.deb 22104d60386a781d3f7d2d8bd7052c60 9554 science optional clustalx_2.1+lgpl-8_arm64.buildinfo 6de9c9fbbe49274541239418c7bc8be1 390888 science optional clustalx_2.1+lgpl-8_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalx Binary: clustalx Architecture: arm64 Version: 2.1+lgpl-8 Checksums-Md5: 747f27a5e530ce5db1bd1aa729ed6c47 13073920 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 6de9c9fbbe49274541239418c7bc8be1 390888 clustalx_2.1+lgpl-8_arm64.deb Checksums-Sha1: b90828f841636bc4352b27df9785499d9fff2449 13073920 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 65dedab862178a42c5860a006e1abb91bd4d05c3 390888 clustalx_2.1+lgpl-8_arm64.deb Checksums-Sha256: 092d0c8f843df92592923612c54eea80b1f725616ccbba8e79fb65958417ac65 13073920 clustalx-dbgsym_2.1+lgpl-8_arm64.deb 062704966d0fa948455c302571968ba899411e19578bf3e8e798ace0dddab819 390888 clustalx_2.1+lgpl-8_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 28 Jan 2020 12:06:27 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-5), binutils (= 2.33.90.20200122-2), binutils-common (= 2.33.90.20200122-2), binutils-x86-64-linux-gnu (= 2.33.90.20200122-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-26), cpp-9 (= 9.2.1-25), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.9), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), fontconfig (= 2.13.1-2+b1), fontconfig-config (= 2.13.1-2), fonts-dejavu-core (= 2.37-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-25), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-26), gcc-8-base (= 8.3.0-26), gcc-9 (= 9.2.1-25), gcc-9-base (= 9.2.1-25), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.3-1), groff-base (= 1.22.4-4), gzip (= 1.9-3+b1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), iso-codes (= 4.4-1), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-25), libatomic1 (= 9.2.1-25), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libavahi-client3 (= 0.7-5), libavahi-common-data (= 0.7-5), libavahi-common3 (= 0.7-5), libbinutils (= 2.33.90.20200122-2), libblkid1 (= 2.34-0.1), libbrotli1 (= 1.0.7-6), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-9), libc-dev-bin (= 2.29-9), libc6 (= 2.29-9), libc6-dev (= 2.29-9), libcap-ng0 (= 0.7.9-2.1+b1), libcap2 (= 1:2.27-1), libcap2-bin (= 1:2.27-1), libcc1-0 (= 9.2.1-25), libclang1-8 (= 1:8.0.1-7), libcom-err2 (= 1.45.5-2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10), libcrypt1 (= 1:4.4.10-10), libctf-nobfd0 (= 2.33.90.20200122-2), libctf0 (= 2.33.90.20200122-2), libcups2 (= 2.3.1-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdbus-1-3 (= 1.12.16-2), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.9), libdouble-conversion3 (= 3.1.5-5), libdpkg-perl (= 1.19.7), libdrm-amdgpu1 (= 2.4.100-4), libdrm-common (= 2.4.100-4), libdrm-intel1 (= 2.4.100-4), libdrm-nouveau2 (= 2.4.100-4), libdrm-radeon1 (= 2.4.100-4), libdrm2 (= 2.4.100-4), libedit2 (= 3.1-20191231-1), libegl-dev (= 1.3.0-7), libegl-mesa0 (= 19.3.2-1), libegl1 (= 1.3.0-7), libelf1 (= 0.176-1.1), libevdev2 (= 1.8.0+dfsg-2), libexpat1 (= 2.2.9-1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-3), libfile-stripnondeterminism-perl (= 1.6.3-2), libfontconfig1 (= 2.13.1-2+b1), libfreetype6 (= 2.10.1-2), libgbm1 (= 19.3.2-1), libgcc-8-dev (= 8.3.0-26), libgcc-9-dev (= 9.2.1-25), libgcc1 (= 1:9.2.1-25), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgl-dev (= 1.3.0-7), libgl1 (= 1.3.0-7), libgl1-mesa-dri (= 19.3.2-1), libglapi-mesa (= 19.3.2-1), libglib2.0-0 (= 2.62.4-1+b1), libglu1-mesa (= 9.0.1-1), libglu1-mesa-dev (= 9.0.1-1), libglvnd0 (= 1.3.0-7), libglx-dev (= 1.3.0-7), libglx-mesa0 (= 19.3.2-1), libglx0 (= 1.3.0-7), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.11.1-2), libgomp1 (= 9.2.1-25), libgpg-error0 (= 1.36-7), libgraphite2-3 (= 1.3.13-11), libgssapi-krb5-2 (= 1.17-6), libgstreamer-plugins-base1.0-0 (= 1.16.2-2), libgstreamer1.0-0 (= 1.16.2-2), libgudev-1.0-0 (= 233-1), libharfbuzz0b (= 2.6.4-1), libhogweed5 (= 3.5.1+really3.5.1-2), libhyphen0 (= 2.8.8-7), libice6 (= 2:1.0.9-2), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-2), libinput-bin (= 1.14.3-1), libinput10 (= 1.14.3-1), libisl22 (= 0.22-2), libitm1 (= 9.2.1-25), libjpeg62-turbo (= 1:1.5.2-2+b1), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libllvm8 (= 1:8.0.1-7), libllvm9 (= 1:9.0.1-8), liblsan0 (= 9.2.1-25), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-26), libmtdev1 (= 1.1.5-1.1), libncursesw6 (= 6.1+20191019-1), libnettle7 (= 3.5.1+really3.5.1-2), liborc-0.4-0 (= 1:0.4.31-1), libp11-kit0 (= 0.23.19-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpciaccess0 (= 0.14-1), libpcre2-16-0 (= 10.34-7), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libpng16-16 (= 1.6.37-1), libpthread-stubs0-dev (= 0.4-1), libqt5concurrent5 (= 5.12.5+dfsg-7), libqt5core5a (= 5.12.5+dfsg-7), libqt5dbus5 (= 5.12.5+dfsg-7), libqt5designer5 (= 5.12.5-2+b1), libqt5designercomponents5 (= 5.12.5-2+b1), libqt5gui5 (= 5.12.5+dfsg-7), libqt5help5 (= 5.12.5-2+b1), libqt5network5 (= 5.12.5+dfsg-7), libqt5positioning5 (= 5.12.5+dfsg-2+b1), libqt5printsupport5 (= 5.12.5+dfsg-7), libqt5qml5 (= 5.12.5-5), libqt5quick5 (= 5.12.5-5), libqt5quickwidgets5 (= 5.12.5-5), libqt5sensors5 (= 5.12.5-2+b1), libqt5sql5 (= 5.12.5+dfsg-7), libqt5sql5-sqlite (= 5.12.5+dfsg-7), libqt5test5 (= 5.12.5+dfsg-7), libqt5webchannel5 (= 5.12.5-2), libqt5webkit5 (= 5.212.0~alpha3-6), libqt5widgets5 (= 5.12.5+dfsg-7), libqt5xml5 (= 5.12.5+dfsg-7), libquadmath0 (= 9.2.1-25), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1), libsensors-config (= 1:3.6.0-2), libsensors5 (= 1:3.6.0-2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.34-0.1), libsqlite3-0 (= 3.31.0+really3.30.1+fossil191229-1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-25), libstdc++6 (= 9.2.1-25), libsub-override-perl (= 0.09-2), libsystemd0 (= 244.1-1), libtasn1-6 (= 4.15.0-2), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-25), libubsan1 (= 9.2.1-25), libuchardet0 (= 0.0.6-3), libudev1 (= 244.1-1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libvulkan-dev (= 1.1.126.0-2), libvulkan1 (= 1.1.126.0-2), libwacom-common (= 1.1-2), libwacom2 (= 1.1-2), libwayland-client0 (= 1.17.0-1+b1), libwayland-server0 (= 1.17.0-1+b1), libwebp6 (= 0.6.1-2+b1), libwoff1 (= 1.0.2-1+b1), libx11-6 (= 2:1.6.8-1), libx11-data (= 2:1.6.8-1), libx11-dev (= 2:1.6.8-1), libx11-xcb1 (= 2:1.6.8-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-dri2-0 (= 1.13.1-3), libxcb-dri3-0 (= 1.13.1-3), libxcb-glx0 (= 1.13.1-3), libxcb-icccm4 (= 0.4.1-1.1), libxcb-image0 (= 0.4.0-1+b2), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present0 (= 1.13.1-3), libxcb-randr0 (= 1.13.1-3), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.13.1-3), libxcb-shape0 (= 1.13.1-3), libxcb-shm0 (= 1.13.1-3), libxcb-sync1 (= 1.13.1-3), libxcb-util0 (= 0.3.8-3+b2), libxcb-xfixes0 (= 1.13.1-3), libxcb-xinerama0 (= 1.13.1-3), libxcb-xinput0 (= 1.13.1-3), libxcb-xkb1 (= 1.13.1-3), libxcb1 (= 1.13.1-3), libxcb1-dev (= 1.13.1-3), libxdamage1 (= 1:1.1.5-1), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxfixes3 (= 1:5.0.3-1), libxkbcommon-x11-0 (= 0.9.1-1), libxkbcommon0 (= 0.9.1-1), libxml2 (= 2.9.4+dfsg1-8), libxrender1 (= 1:0.9.10-1), libxshmfence1 (= 1.3-1), libxslt1.1 (= 1.1.32-2.2), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.7-4), linux-libc-dev (= 5.4.13-1), login (= 1:4.8-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.3-20), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), qdoc-qt5 (= 5.12.5-2+b1), qhelpgenerator-qt5 (= 5.12.5-2+b1), qt5-assistant (= 5.12.5-2+b1), qt5-qmake (= 5.12.5+dfsg-7), qt5-qmake-bin (= 5.12.5+dfsg-7), qtattributionsscanner-qt5 (= 5.12.5-2+b1), qtbase5-dev (= 5.12.5+dfsg-7), qtbase5-dev-tools (= 5.12.5+dfsg-7), qtchooser (= 66-2), qttools5-dev-tools (= 5.12.5-2+b1), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1), tar (= 1.30+dfsg-6+b1), ucf (= 3.0038+nmu1), util-linux (= 2.34-0.1), x11-common (= 1:7.7+20), x11proto-core-dev (= 2018.4-4), x11proto-dev (= 2018.4-4), x11proto-xext-dev (= 2018.4-4), xkb-data (= 2.26-2), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.3.5-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1551035080" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-8_arm64.deb ------------------------------------ new Debian package, version 2.0. size 13073920 bytes: control archive=540 bytes. 382 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-8 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 13038 Depends: clustalx (= 2.1+lgpl-8) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: 97ee5ff06a380322615ee4b006acadae21f5d7c4 drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/97/ -rw-r--r-- root/root 13340672 2019-02-24 19:04 ./usr/lib/debug/.build-id/97/ee5ff06a380322615ee4b006acadae21f5d7c4.debug drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-8_arm64.deb ----------------------------- new Debian package, version 2.0. size 390888 bytes: control archive=1452 bytes. 1548 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-8 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1265 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.0), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/bin/ -rwxr-xr-x root/root 1184512 2019-02-24 19:04 ./usr/bin/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2019-02-24 19:04 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/applications/ -rw-r--r-- root/root 876 2019-02-24 19:04 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2019-02-24 19:04 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 4511 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1826 2019-02-24 19:04 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2019-02-24 19:04 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2019-02-24 19:04 ./usr/share/mime/packages/clustalx.xml lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [549 B] Get:5 copy:/<>/apt_archive ./ Packages [635 B] Fetched 2147 B in 0s (140 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 7113 kB of archives. After this operation, 21.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.0 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.19-1 [529 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.19-1 [889 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libberkeleydb-perl amd64 0.62-1+b1 [124 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.45-1 [223 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3100-1 [39.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.21-1 [368 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-5 [26.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.43-1 [83.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008001-2 [331 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.47.0 [1309 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7113 kB in 0s (26.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 27281 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.0_all.deb ... Unpacking netbase (6.0) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.19-1_amd64.deb ... Unpacking gpgconf (2.2.19-1) ... Selecting previously unselected package gpg. Preparing to unpack .../06-gpg_2.2.19-1_amd64.deb ... Unpacking gpg (2.2.19-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../07-libapt-pkg-perl_0.1.36+b2_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b2) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../08-libb-hooks-op-check-perl_0.22-1+b2_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../09-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../10-libdevel-callchecker-perl_0.008-1+b1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../11-libparams-classify-perl_0.015-1+b2_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b2) ... 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Preparing to unpack .../73-lintian_2.47.0_all.deb ... Unpacking lintian (2.47.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:arm64. Preparing to unpack .../74-sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b2) ... Setting up libberkeleydb-perl:amd64 (0.62-1+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.12-1) ... Setting up libclone-perl (0.43-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libfuture-perl (0.43-1) ... Setting up libyaml-libyaml-perl (0.80+repack-2+b1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 188276 Build-Time: 304 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 51 Job: clustalx_2.1+lgpl-8 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 366 Source-Version: 2.1+lgpl-8 Space: 188276 Status: successful Version: 2.1+lgpl-8 -------------------------------------------------------------------------------- Finished at 2020-01-28T12:06:28Z Build needed 00:06:06, 188276k disk space