sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | clustalx 2.1+lgpl-8 (armhf) Mon, 14 Sep 2020 18:58:39 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-8 Source Version: 2.1+lgpl-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-c5ff4ad8-68ba-458f-aabe-44fd8a61a9f2' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-WPffo1/resolver-drJzzM' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-14-0801.17.pdiff [5128 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-14-1405.41.pdiff [18.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-14-1405.41.pdiff [18.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-14-0801.17.pdiff [5384 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-14-1405.41.pdiff [13.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-14-1405.41.pdiff [13.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8111 kB] Fetched 8355 kB in 2s (5135 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libsystemd0 libudev1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 531 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libsystemd0 amd64 246.5-1 [369 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libudev1 amd64 246.5-1 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 531 kB in 0s (8835 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10442 files and directories currently installed.) Preparing to unpack .../libsystemd0_246.5-1_amd64.deb ... Unpacking libsystemd0:amd64 (246.5-1) over (246.4-1) ... Setting up libsystemd0:amd64 (246.5-1) ... (Reading database ... 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Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (dsc) [2079 B] Get:2 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (tar) [342 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (diff) [14.9 kB] Fetched 359 kB in 0s (4150 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-WPffo1/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-WPffo1' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [418 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1885 B in 0s (77.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libavahi-client3 libavahi-client3:armhf libavahi-common-data libavahi-common-data:armhf libavahi-common3 libavahi-common3:armhf libblkid1:armhf libbrotli1 libbrotli1:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcap2 libcap2-bin libclang1-9 libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libcups2 libcups2:armhf libdbus-1-3 libdbus-1-3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:armhf libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:armhf libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:armhf libdrm-radeon1 libdrm-radeon1:armhf libdrm2 libdrm2:armhf libdw1 libedit2 libedit2:armhf libegl-dev:armhf libegl-mesa0 libegl-mesa0:armhf libegl1 libegl1:armhf libelf1 libelf1:armhf libevdev2 libevdev2:armhf libexpat1 libexpat1:armhf libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:armhf libfreetype6 libfreetype6:armhf libgbm1 libgbm1:armhf libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgcrypt20:armhf libgl-dev:armhf libgl1 libgl1:armhf libgl1-mesa-dri libgl1-mesa-dri:armhf libglapi-mesa libglapi-mesa:armhf libgles-dev:armhf libgles1:armhf libgles2:armhf libglib2.0-0 libglib2.0-0:armhf libglvnd0 libglvnd0:armhf libglx-dev:armhf libglx-mesa0 libglx-mesa0:armhf libglx0 libglx0:armhf libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgpg-error0:armhf libgraphite2-3 libgraphite2-3:armhf libgssapi-krb5-2 libgssapi-krb5-2:armhf libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:armhf libharfbuzz0b libharfbuzz0b:armhf libhogweed6:armhf libhyphen0 libice6 libice6:armhf libicu67 libicu67:armhf libidn2-0:armhf libinput-bin libinput10 libinput10:armhf libio-string-perl libjpeg62-turbo libjpeg62-turbo:armhf libk5crypto3 libk5crypto3:armhf libkeyutils1 libkeyutils1:armhf libkrb5-3 libkrb5-3:armhf libkrb5support0 libkrb5support0:armhf libllvm10 libllvm10:armhf libllvm9 liblocale-gettext-perl liblz4-1:armhf liblzma5:armhf libmagic-mgc libmagic1 libmd4c0 libmd4c0:armhf libmount1:armhf libmtdev1 libmtdev1:armhf libnettle8:armhf liborc-0.4-0 libp11-kit0:armhf libpciaccess0 libpcre2-16-0 libpcre2-16-0:armhf libpcre2-8-0:armhf libpcre3:armhf libperl5.30 libpipeline1 libpng16-16 libpng16-16:armhf libpthread-stubs0-dev:armhf libqt5concurrent5:armhf libqt5core5a libqt5core5a:armhf libqt5dbus5 libqt5dbus5:armhf libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:armhf libqt5help5 libqt5network5 libqt5network5:armhf libqt5positioning5 libqt5printsupport5 libqt5printsupport5:armhf libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:armhf libqt5sql5-sqlite libqt5test5:armhf libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:armhf libqt5xml5 libqt5xml5:armhf libselinux1:armhf libsensors-config libsensors5 libsensors5:armhf libsigsegv2 libsm6 libsm6:armhf libsqlite3-0 libssl1.1 libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd0:armhf libtasn1-6:armhf libtinfo6:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libudev1:armhf libunistring2:armhf libunwind8 libuuid1:armhf libvulkan-dev:armhf libvulkan1 libvulkan1:armhf libwacom-common libwacom2 libwacom2:armhf libwayland-client0 libwayland-client0:armhf libwayland-server0 libwayland-server0:armhf libwebp6 libwoff1 libx11-6 libx11-6:armhf libx11-data libx11-dev:armhf libx11-xcb1 libx11-xcb1:armhf libxau-dev:armhf libxau6 libxau6:armhf libxcb-dri2-0 libxcb-dri2-0:armhf libxcb-dri3-0 libxcb-dri3-0:armhf libxcb-glx0 libxcb-glx0:armhf libxcb-icccm4 libxcb-icccm4:armhf libxcb-image0 libxcb-image0:armhf libxcb-keysyms1 libxcb-keysyms1:armhf libxcb-present0 libxcb-present0:armhf libxcb-randr0 libxcb-randr0:armhf libxcb-render-util0 libxcb-render-util0:armhf libxcb-render0 libxcb-render0:armhf libxcb-shape0 libxcb-shape0:armhf libxcb-shm0 libxcb-shm0:armhf libxcb-sync1 libxcb-sync1:armhf libxcb-util0 libxcb-util0:armhf libxcb-xfixes0 libxcb-xfixes0:armhf libxcb-xinerama0 libxcb-xinerama0:armhf libxcb-xinput0 libxcb-xinput0:armhf libxcb-xkb1 libxcb-xkb1:armhf libxcb1 libxcb1:armhf libxcb1-dev:armhf libxdamage1 libxdamage1:armhf libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxfixes3 libxfixes3:armhf libxkbcommon-x11-0 libxkbcommon-x11-0:armhf libxkbcommon0 libxkbcommon0:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxshmfence1 libxshmfence1:armhf libxslt1.1 libxxf86vm1 libxxf86vm1:armhf libyaml-perl libz3-4 libz3-4:armhf libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.30 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:armhf qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:armhf qtbase5-dev-tools qtchooser qttools5-dev-tools sensible-utils shared-mime-info ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf cups-common cups-common:armhf gnupg git bzr rng-tools:armhf gnutls-bin:armhf krb5-doc krb5-user krb5-doc:armhf krb5-user:armhf libvisual-0.4-plugins gstreamer1.0-tools pciutils libthai0 libthai0:armhf qt5-image-formats-plugins qtwayland5 qt5-image-formats-plugins:armhf qtwayland5:armhf qt5-qmltooling-plugins lm-sensors lm-sensors:armhf libstdc++-10-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:armhf libxcb-doc:armhf libxext-doc:armhf libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl qt5-doc default-libmysqlclient-dev:armhf firebird-dev:armhf libpq-dev:armhf libsqlite3-dev:armhf unixodbc-dev:armhf Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libpam-cap dbus dbus:armhf libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data xdg-user-dirs libglib2.0-data:armhf xdg-user-dirs:armhf libgpg-error-l10n:armhf gstreamer1.0-plugins-base krb5-locales krb5-locales:armhf qttranslations5-l10n qttranslations5-l10n:armhf libqt5svg5 qt5-gtk-platformtheme libqt5svg5:armhf qt5-gtk-platformtheme:armhf geoclue-2.0 libqt5sql5-sqlite:armhf | libqt5sql5-mysql:armhf | libqt5sql5-odbc:armhf | libqt5sql5-psql:armhf | libqt5sql5-tds:armhf | libqt5sql5-ibase:armhf libltdl-dev uuid-runtime:armhf mesa-vulkan-drivers | vulkan-icd mesa-vulkan-drivers:armhf | vulkan-icd:armhf libwacom-bin libwacom-bin:armhf libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl libqt5opengl5-dev:armhf The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libavahi-client3 libavahi-client3:armhf libavahi-common-data libavahi-common-data:armhf libavahi-common3 libavahi-common3:armhf libblkid1:armhf libbrotli1 libbrotli1:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcap2 libcap2-bin libclang1-9 libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libcups2 libcups2:armhf libdbus-1-3 libdbus-1-3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:armhf libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:armhf libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:armhf libdrm-radeon1 libdrm-radeon1:armhf libdrm2 libdrm2:armhf libdw1 libedit2 libedit2:armhf libegl-dev:armhf libegl-mesa0 libegl-mesa0:armhf libegl1 libegl1:armhf libelf1 libelf1:armhf libevdev2 libevdev2:armhf libexpat1 libexpat1:armhf libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:armhf libfreetype6 libfreetype6:armhf libgbm1 libgbm1:armhf libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgcrypt20:armhf libgl-dev:armhf libgl1 libgl1:armhf libgl1-mesa-dri libgl1-mesa-dri:armhf libglapi-mesa libglapi-mesa:armhf libgles-dev:armhf libgles1:armhf libgles2:armhf libglib2.0-0 libglib2.0-0:armhf libglvnd0 libglvnd0:armhf libglx-dev:armhf libglx-mesa0 libglx-mesa0:armhf libglx0 libglx0:armhf libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgpg-error0:armhf libgraphite2-3 libgraphite2-3:armhf libgssapi-krb5-2 libgssapi-krb5-2:armhf libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:armhf libharfbuzz0b libharfbuzz0b:armhf libhogweed6:armhf libhyphen0 libice6 libice6:armhf libicu67 libicu67:armhf libidn2-0:armhf libinput-bin libinput10 libinput10:armhf libio-string-perl libjpeg62-turbo libjpeg62-turbo:armhf libk5crypto3 libk5crypto3:armhf libkeyutils1 libkeyutils1:armhf libkrb5-3 libkrb5-3:armhf libkrb5support0 libkrb5support0:armhf libllvm10 libllvm10:armhf libllvm9 liblocale-gettext-perl liblz4-1:armhf liblzma5:armhf libmagic-mgc libmagic1 libmd4c0 libmd4c0:armhf libmount1:armhf libmtdev1 libmtdev1:armhf libnettle8:armhf liborc-0.4-0 libp11-kit0:armhf libpciaccess0 libpcre2-16-0 libpcre2-16-0:armhf libpcre2-8-0:armhf libpcre3:armhf libperl5.30 libpipeline1 libpng16-16 libpng16-16:armhf libpthread-stubs0-dev:armhf libqt5concurrent5:armhf libqt5core5a libqt5core5a:armhf libqt5dbus5 libqt5dbus5:armhf libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:armhf libqt5help5 libqt5network5 libqt5network5:armhf libqt5positioning5 libqt5printsupport5 libqt5printsupport5:armhf libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:armhf libqt5sql5-sqlite libqt5test5:armhf libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:armhf libqt5xml5 libqt5xml5:armhf libselinux1:armhf libsensors-config libsensors5 libsensors5:armhf libsigsegv2 libsm6 libsm6:armhf libsqlite3-0 libssl1.1 libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd0:armhf libtasn1-6:armhf libtinfo6:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libudev1:armhf libunistring2:armhf libunwind8 libuuid1:armhf libvulkan-dev:armhf libvulkan1 libvulkan1:armhf libwacom-common libwacom2 libwacom2:armhf libwayland-client0 libwayland-client0:armhf libwayland-server0 libwayland-server0:armhf libwebp6 libwoff1 libx11-6 libx11-6:armhf libx11-data libx11-dev:armhf libx11-xcb1 libx11-xcb1:armhf libxau-dev:armhf libxau6 libxau6:armhf libxcb-dri2-0 libxcb-dri2-0:armhf libxcb-dri3-0 libxcb-dri3-0:armhf libxcb-glx0 libxcb-glx0:armhf libxcb-icccm4 libxcb-icccm4:armhf libxcb-image0 libxcb-image0:armhf libxcb-keysyms1 libxcb-keysyms1:armhf libxcb-present0 libxcb-present0:armhf libxcb-randr0 libxcb-randr0:armhf libxcb-render-util0 libxcb-render-util0:armhf libxcb-render0 libxcb-render0:armhf libxcb-shape0 libxcb-shape0:armhf libxcb-shm0 libxcb-shm0:armhf libxcb-sync1 libxcb-sync1:armhf libxcb-util0 libxcb-util0:armhf libxcb-xfixes0 libxcb-xfixes0:armhf libxcb-xinerama0 libxcb-xinerama0:armhf libxcb-xinput0 libxcb-xinput0:armhf libxcb-xkb1 libxcb-xkb1:armhf libxcb1 libxcb1:armhf libxcb1-dev:armhf libxdamage1 libxdamage1:armhf libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxfixes3 libxfixes3:armhf libxkbcommon-x11-0 libxkbcommon-x11-0:armhf libxkbcommon0 libxkbcommon0:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxshmfence1 libxshmfence1:armhf libxslt1.1 libxxf86vm1 libxxf86vm1:armhf libyaml-perl libz3-4 libz3-4:armhf libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.30 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:armhf qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:armhf qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-main-dummy:armhf sensible-utils shared-mime-info ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:armhf 0 upgraded, 371 newly installed, 0 to remove and 0 not upgraded. Need to get 269 MB of archives. After this operation, 1040 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-3 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.0-1 [1361 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2 amd64 1:2.43-1 [23.5 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.180-1+b1 [165 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libdw1 amd64 0.180-1+b1 [234 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libunwind8 amd64 1.3.2-2 [54.5 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2-bin amd64 1:2.43-1 [32.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.18.0-3 [2221 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 liborc-0.4-0 amd64 1:0.4.32-1 [192 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 iso-codes all 4.5.0-1 [2793 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.18.0-2 [2141 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-2 [292 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6 [692 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 shared-mime-info amd64 1.15-1 [789 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdouble-conversion3 amd64 3.1.5-5 [40.4 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-16-0 amd64 10.34-7 [219 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5core5a amd64 5.14.2+dfsg-6 [1784 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2 [287 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.2+dfsg-3 [409 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.102-1 [14.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm2 amd64 2.4.102-1 [41.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-server0 amd64 1.18.0-2~exp1.1 [34.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgbm1 amd64 20.1.7-1 [76.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libglapi-mesa amd64 20.1.7-1 [70.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-client0 amd64 1.18.0-2~exp1.1 [26.9 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.10-3 [203 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri2-0 amd64 1.14-2 [103 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri3-0 amd64 1.14-2 [102 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-present0 amd64 1.14-2 [101 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-sync1 amd64 1.14-2 [105 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xfixes0 amd64 1.14-2 [105 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libegl-mesa0 amd64 20.1.7-1 [144 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libegl1 amd64 1.3.2-1 [34.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.10-3 [311 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.10-3 [770 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-glx0 amd64 1.14-2 [118 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.102-1 [28.2 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-intel1 amd64 2.4.102-1 [70.4 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.102-1 [26.5 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.102-1 [29.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.8-1 [7303 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm10 amd64 1:10.0.1-5 [16.6 MB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.6.0-2 [32.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-2 [53.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libvulkan1 amd64 1.2.148.1-1 [102 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1-mesa-dri amd64 20.1.7-1 [9540 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libglx-mesa0 amd64 20.1.7-1 [187 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.7-1 [1467 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libevdev2 amd64 1.9.1+dfsg-1 [33.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libgudev-1.0-0 amd64 233-1 [13.8 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom-common all 1.5-1 [47.8 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom2 amd64 1.5-1 [21.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libinput-bin amd64 1.16.1-1 [22.9 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libinput10 amd64 1.16.1-1 [118 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libmd4c0 amd64 0.4.5-1 [43.0 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libdbus-1-3 amd64 1.12.20-1 [217 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5dbus5 amd64 5.14.2+dfsg-6 [224 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-10 [64.6 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-10 [115 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-10 [366 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-10 [156 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5network5 amd64 5.14.2+dfsg-6 [651 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-randr0 amd64 1.14-2 [112 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shape0 amd64 1.14-2 [102 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinerama0 amd64 1.14-2 [101 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinput0 amd64 1.14-2 [125 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xkb1 amd64 1.14-2 [126 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 xkb-data all 2.29-2 [655 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon0 amd64 0.10.0-1 [123 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [39.4 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5gui5 amd64 5.14.2+dfsg-6 [3148 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5positioning5 amd64 5.14.2+dfsg-2 [212 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common-data amd64 0.8-3 [126 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common3 amd64 0.8-3 [58.3 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-client3 amd64 0.8-3 [61.7 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 libcups2 amd64 2.3.3-3 [348 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5widgets5 amd64 5.14.2+dfsg-6 [2336 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5printsupport5 amd64 5.14.2+dfsg-6 [218 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qml5 amd64 5.14.2+dfsg-3 [1264 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qmlmodels5 amd64 5.14.2+dfsg-3 [216 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quick5 amd64 5.14.2+dfsg-3 [1558 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sensors5 amd64 5.14.2-2 [117 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webchannel5 amd64 5.14.2-2 [56.3 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 libwoff1 amd64 1.0.2-1+b1 [42.4 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libxslt1.1 amd64 1.1.34-4 [239 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha4-5 [11.7 MB] Get:136 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10.2.0-7 [199 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10.2.0-7 [36.2 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.17-1 [94.9 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.31-3 [2350 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main armhf libgpg-error0 armhf 1.38-2 [69.0 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main armhf libgcrypt20 armhf 1.8.6-2 [505 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main armhf liblz4-1 armhf 1.9.2-2 [52.6 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main armhf liblzma5 armhf 5.2.4-1+b1 [145 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main armhf libzstd1 armhf 1.4.5+dfsg-4 [268 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main armhf libsystemd0 armhf 246.5-1 [344 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.3.0-18 [197 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.35-3 [2771 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-7 [1737 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-7 [8664 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.1.0-1 [1644 B] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:166 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf-base amd64 10.2.0-3cross2 [198 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabihf amd64 10.2.0-3cross2 [7518 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:10.1.0-1 [16.8 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-3cross2 [195 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.31-1cross2 [1115 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 10.2.0-3cross2 [36.3 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 10.2.0-3cross2 [82.9 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 10.2.0-3cross2 [6644 B] Get:175 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armhf-cross all 10.2.0-3cross2 [303 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 10.2.0-3cross2 [380 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 10.2.0-3cross2 [115 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armhf-cross all 10.2.0-3cross2 [693 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf amd64 10.2.0-3cross2 [14.9 MB] Get:180 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:10.1.0-1 [1476 B] Get:181 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.7.6-1cross2 [1198 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.31-1cross2 [1901 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armhf-cross all 10.2.0-3cross2 [1751 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabihf amd64 10.2.0-3cross2 [8181 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:10.1.0-1 [1184 B] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.3.0-18 [370 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10.2.0-7 [6884 B] Get:215 http://debian.oregonstate.edu/debian unstable/main armhf libavahi-common-data armhf 0.8-3 [126 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main armhf libavahi-common3 armhf 0.8-3 [54.9 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main armhf libdbus-1-3 armhf 1.12.20-1 [194 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main armhf libavahi-client3 armhf 0.8-3 [58.2 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main armhf libblkid1 armhf 2.36-3 [181 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main armhf libbrotli1 armhf 1.0.9-2 [274 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main armhf libbsd0 armhf 0.10.0-1 [111 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.8.7-1 [1144 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.17-1 [113 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.31-3 [1924 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm9 amd64 1:9.0.1-14 [15.0 MB] Get:226 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-9 amd64 1:9.0.1-14 [6722 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.45.6-1 [70.9 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main armhf libgmp10 armhf 2:6.2.0+dfsg-6 [206 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main armhf libnettle8 armhf 3.6-2 [256 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main armhf libhogweed6 armhf 3.6-2 [302 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main armhf libunistring2 armhf 0.9.10-4 [374 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main armhf libidn2-0 armhf 2.3.0-1 [83.2 kB] Get:233 http://debian.oregonstate.edu/debian unstable/main armhf libffi7 armhf 3.3-4 [20.0 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main armhf libp11-kit0 armhf 0.23.21-2 [312 kB] Get:235 http://debian.oregonstate.edu/debian unstable/main armhf libtasn1-6 armhf 4.16.0-2 [50.2 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls30 armhf 3.6.15-2 [1131 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.17-10 [61.8 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.17-10 [114 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6.1-2 [14.4 kB] Get:240 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1g-1 [1308 kB] Get:241 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.17-10 [324 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.17-10 [136 kB] Get:243 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-2 [85.4 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main armhf libcups2 armhf 2.3.3-3 [315 kB] Get:245 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10.2.0-7 [420 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main armhf libdouble-conversion3 armhf 3.1.5-5 [39.3 kB] Get:247 http://debian.oregonstate.edu/debian unstable/main armhf libdrm2 armhf 2.4.102-1 [37.9 kB] Get:248 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.102-1 [26.9 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-nouveau2 armhf 2.4.102-1 [24.6 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-radeon1 armhf 2.4.102-1 [27.8 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main armhf libtinfo6 armhf 6.2-1 [322 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main armhf libedit2 armhf 3.1-20191231-1 [80.1 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main armhf libglvnd0 armhf 1.3.2-1 [51.8 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main armhf libexpat1 armhf 2.2.9-1 [73.3 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-server0 armhf 1.18.0-2~exp1.1 [28.1 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main armhf libgbm1 armhf 20.1.7-1 [72.1 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main armhf libglapi-mesa armhf 20.1.7-1 [76.1 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-client0 armhf 1.18.0-2~exp1.1 [22.1 kB] Get:259 http://debian.oregonstate.edu/debian unstable/main armhf libx11-xcb1 armhf 2:1.6.10-3 [203 kB] Get:260 http://debian.oregonstate.edu/debian unstable/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get:261 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get:262 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1 armhf 1.14-2 [136 kB] Get:263 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri2-0 armhf 1.14-2 [103 kB] Get:264 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri3-0 armhf 1.14-2 [102 kB] Get:265 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-present0 armhf 1.14-2 [101 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-sync1 armhf 1.14-2 [104 kB] Get:267 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xfixes0 armhf 1.14-2 [105 kB] Get:268 http://debian.oregonstate.edu/debian unstable/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get:269 http://debian.oregonstate.edu/debian unstable/main armhf libegl-mesa0 armhf 20.1.7-1 [125 kB] Get:270 http://debian.oregonstate.edu/debian unstable/main armhf libegl1 armhf 1.3.2-1 [29.5 kB] Get:271 http://debian.oregonstate.edu/debian unstable/main armhf libx11-6 armhf 2:1.6.10-3 [711 kB] Get:272 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-glx0 armhf 1.14-2 [117 kB] Get:273 http://debian.oregonstate.edu/debian unstable/main armhf libxdamage1 armhf 1:1.1.5-2 [15.1 kB] Get:274 http://debian.oregonstate.edu/debian unstable/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get:275 http://debian.oregonstate.edu/debian unstable/main armhf libxfixes3 armhf 1:5.0.3-2 [20.6 kB] Get:276 http://debian.oregonstate.edu/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get:277 http://debian.oregonstate.edu/debian unstable/main armhf libelf1 armhf 0.180-1+b1 [160 kB] Get:278 http://debian.oregonstate.edu/debian unstable/main armhf libz3-4 armhf 4.8.8-1 [6286 kB] Get:279 http://debian.oregonstate.edu/debian unstable/main armhf libllvm10 armhf 1:10.0.1-5 [14.5 MB] Get:280 http://debian.oregonstate.edu/debian unstable/main armhf libsensors5 armhf 1:3.6.0-2 [50.3 kB] Get:281 http://debian.oregonstate.edu/debian unstable/main armhf libgl1-mesa-dri armhf 20.1.7-1 [5901 kB] Get:282 http://debian.oregonstate.edu/debian unstable/main armhf libglx-mesa0 armhf 20.1.7-1 [168 kB] Get:283 http://debian.oregonstate.edu/debian unstable/main armhf libglx0 armhf 1.3.2-1 [32.8 kB] Get:284 http://debian.oregonstate.edu/debian unstable/main armhf libgl1 armhf 1.3.2-1 [94.3 kB] Get:285 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:286 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get:287 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2020.1-1 [3404 B] Get:288 http://debian.oregonstate.edu/debian unstable/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.5 kB] Get:289 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get:290 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:291 http://debian.oregonstate.edu/debian unstable/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get:292 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1-dev armhf 1.14-2 [175 kB] Get:293 http://debian.oregonstate.edu/debian unstable/main armhf libx11-dev armhf 2:1.6.10-3 [785 kB] Get:294 http://debian.oregonstate.edu/debian unstable/main armhf libglx-dev armhf 1.3.2-1 [16.3 kB] Get:295 http://debian.oregonstate.edu/debian unstable/main armhf libgl-dev armhf 1.3.2-1 [100 kB] Get:296 http://debian.oregonstate.edu/debian unstable/main armhf libegl-dev armhf 1.3.2-1 [19.6 kB] Get:297 http://debian.oregonstate.edu/debian unstable/main armhf libevdev2 armhf 1.9.1+dfsg-1 [27.8 kB] Get:298 http://debian.oregonstate.edu/debian unstable/main armhf libpng16-16 armhf 1.6.37-2 [276 kB] Get:299 http://debian.oregonstate.edu/debian unstable/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [350 kB] Get:300 http://debian.oregonstate.edu/debian unstable/main armhf libuuid1 armhf 2.36-3 [81.3 kB] Get:301 http://debian.oregonstate.edu/debian unstable/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get:302 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10.2.0-7 [84.6 kB] Get:303 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10.2.0-7 [116 kB] Get:304 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.3.0-18 [662 kB] Get:305 http://debian.oregonstate.edu/debian unstable/main armhf libgles1 armhf 1.3.2-1 [12.6 kB] Get:306 http://debian.oregonstate.edu/debian unstable/main armhf libgles2 armhf 1.3.2-1 [18.2 kB] Get:307 http://debian.oregonstate.edu/debian unstable/main armhf libgles-dev armhf 1.3.2-1 [50.3 kB] Get:308 http://debian.oregonstate.edu/debian unstable/main armhf libpcre2-8-0 armhf 10.34-7 [211 kB] Get:309 http://debian.oregonstate.edu/debian unstable/main armhf libselinux1 armhf 3.1-2 [78.9 kB] Get:310 http://debian.oregonstate.edu/debian unstable/main armhf libmount1 armhf 2.36-3 [196 kB] Get:311 http://debian.oregonstate.edu/debian unstable/main armhf libpcre3 armhf 2:8.39-13 [322 kB] Get:312 http://debian.oregonstate.edu/debian unstable/main armhf libglib2.0-0 armhf 2.66.0-1 [1197 kB] Get:313 http://debian.oregonstate.edu/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get:314 http://debian.oregonstate.edu/debian unstable/main armhf libudev1 armhf 246.5-1 [156 kB] Get:315 http://debian.oregonstate.edu/debian unstable/main armhf libgudev-1.0-0 armhf 233-1 [11.9 kB] Get:316 http://debian.oregonstate.edu/debian unstable/main armhf libharfbuzz0b armhf 2.6.7-1 [1425 kB] Get:317 http://debian.oregonstate.edu/debian unstable/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get:318 http://debian.oregonstate.edu/debian unstable/main armhf libicu67 armhf 67.1-4 [8316 kB] Get:319 http://debian.oregonstate.edu/debian unstable/main armhf libmtdev1 armhf 1.1.6-1 [21.9 kB] Get:320 http://debian.oregonstate.edu/debian unstable/main armhf libwacom2 armhf 1.5-1 [18.7 kB] Get:321 http://debian.oregonstate.edu/debian unstable/main armhf libinput10 armhf 1.16.1-1 [101 kB] Get:322 http://debian.oregonstate.edu/debian unstable/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [120 kB] Get:323 http://debian.oregonstate.edu/debian unstable/main armhf libmd4c0 armhf 0.4.5-1 [38.8 kB] Get:324 http://debian.oregonstate.edu/debian unstable/main armhf libpcre2-16-0 armhf 10.34-7 [194 kB] Get:325 http://debian.oregonstate.edu/debian unstable/main armhf libqt5core5a armhf 5.14.2+dfsg-6 [1525 kB] Get:326 http://debian.oregonstate.edu/debian unstable/main armhf libqt5concurrent5 armhf 5.14.2+dfsg-6 [65.2 kB] Get:327 http://debian.oregonstate.edu/debian unstable/main armhf libqt5dbus5 armhf 5.14.2+dfsg-6 [213 kB] Get:328 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5xml5 amd64 5.14.2+dfsg-6 [137 kB] Get:329 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designer5 amd64 5.14.2-3 [2700 kB] Get:330 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designercomponents5 amd64 5.14.2-3 [711 kB] Get:331 http://debian.oregonstate.edu/debian unstable/main armhf libqt5network5 armhf 5.14.2+dfsg-6 [610 kB] Get:332 http://debian.oregonstate.edu/debian unstable/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get:333 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB] Get:334 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shm0 armhf 1.14-2 [101 kB] Get:335 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-util0 armhf 0.3.8-3+b2 [21.9 kB] Get:336 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-image0 armhf 0.4.0-1+b2 [23.3 kB] Get:337 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.8 kB] Get:338 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-randr0 armhf 1.14-2 [112 kB] Get:339 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-render0 armhf 1.14-2 [110 kB] Get:340 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.4 kB] Get:341 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shape0 armhf 1.14-2 [102 kB] Get:342 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xinerama0 armhf 1.14-2 [101 kB] Get:343 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xinput0 armhf 1.14-2 [124 kB] Get:344 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xkb1 armhf 1.14-2 [123 kB] Get:345 http://debian.oregonstate.edu/debian unstable/main armhf libxkbcommon0 armhf 0.10.0-1 [113 kB] Get:346 http://debian.oregonstate.edu/debian unstable/main armhf libxkbcommon-x11-0 armhf 0.10.0-1 [38.1 kB] Get:347 http://debian.oregonstate.edu/debian unstable/main armhf libqt5gui5 armhf 5.14.2+dfsg-6 [2533 kB] Get:348 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5 amd64 5.14.2+dfsg-6 [139 kB] Get:349 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5help5 amd64 5.14.2-3 [121 kB] Get:350 http://debian.oregonstate.edu/debian unstable/main armhf libqt5widgets5 armhf 5.14.2+dfsg-6 [2108 kB] Get:351 http://debian.oregonstate.edu/debian unstable/main armhf libqt5printsupport5 armhf 5.14.2+dfsg-6 [210 kB] Get:352 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.14.2+dfsg-3 [47.5 kB] Get:353 http://debian.oregonstate.edu/debian unstable/main armhf libqt5sql5 armhf 5.14.2+dfsg-6 [133 kB] Get:354 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.14.2+dfsg-6 [79.6 kB] Get:355 http://debian.oregonstate.edu/debian unstable/main armhf libqt5test5 armhf 5.14.2+dfsg-6 [154 kB] Get:356 http://debian.oregonstate.edu/debian unstable/main armhf libqt5xml5 armhf 5.14.2+dfsg-6 [127 kB] Get:357 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.3.0-18 [1757 kB] Get:358 http://debian.oregonstate.edu/debian unstable/main armhf libvulkan1 armhf 1.2.148.1-1 [84.2 kB] Get:359 http://debian.oregonstate.edu/debian unstable/main armhf libvulkan-dev armhf 1.2.148.1-1 [556 kB] Get:360 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2020.1-1 [3404 B] Get:361 http://debian.oregonstate.edu/debian unstable/main armhf libxext-dev armhf 2:1.3.3-1+b2 [103 kB] Get:362 http://debian.oregonstate.edu/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:363 http://debian.oregonstate.edu/debian unstable/main amd64 qdoc-qt5 amd64 5.14.2-3 [512 kB] Get:364 http://debian.oregonstate.edu/debian unstable/main amd64 qhelpgenerator-qt5 amd64 5.14.2-3 [58.0 kB] Get:365 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-assistant amd64 5.14.2-3 [359 kB] Get:366 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-qmake-bin amd64 5.14.2+dfsg-6 [1035 kB] Get:367 http://debian.oregonstate.edu/debian unstable/main armhf qt5-qmake armhf 5.14.2+dfsg-6 [242 kB] Get:368 http://debian.oregonstate.edu/debian unstable/main amd64 qtattributionsscanner-qt5 amd64 5.14.2-3 [34.5 kB] Get:369 http://debian.oregonstate.edu/debian unstable/main amd64 qtbase5-dev-tools amd64 5.14.2+dfsg-6 [731 kB] Get:370 http://debian.oregonstate.edu/debian unstable/main armhf qtbase5-dev armhf 5.14.2+dfsg-6 [1017 kB] Get:371 http://debian.oregonstate.edu/debian unstable/main amd64 qttools5-dev-tools amd64 5.14.2-3 [972 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 269 MB in 2s (110 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up libfreetype6:armhf (2.10.2+dfsg-3) ... Setting up libxcb-sync1:amd64 (1.14-2) ... Setting up libxcb-sync1:armhf (1.14-2) ... Setting up x11proto-core-dev (2020.1-1) ... Setting up libasan6-armhf-cross (10.2.0-3cross2) ... Setting up shared-mime-info (1.15-1) ... Setting up libxkbcommon-x11-0:amd64 (0.10.0-1) ... Setting up libxkbcommon-x11-0:armhf (0.10.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-10) ... Setting up libgssapi-krb5-2:armhf (1.17-10) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up cpp-10-arm-linux-gnueabihf (10.2.0-3cross2) ... Setting up libubsan1-armhf-cross (10.2.0-3cross2) ... Setting up ucf (3.0043) ... Setting up libqt5core5a:amd64 (5.14.2+dfsg-6) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up libubsan1:armhf (10.2.0-7) ... Setting up libxcb-dri2-0:amd64 (1.14-2) ... Setting up libxcb-dri2-0:armhf (1.14-2) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up libdrm2:amd64 (2.4.102-1) ... Setting up libdrm2:armhf (2.4.102-1) ... Setting up g++ (4:10.1.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libqt5dbus5:amd64 (5.14.2+dfsg-6) ... Setting up libmount1:armhf (2.36-3) ... Setting up libxcb-randr0:amd64 (1.14-2) ... Setting up libxcb-randr0:armhf (1.14-2) ... Setting up libxslt1.1:amd64 (1.1.34-4) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.10-3) ... Setting up libx11-6:armhf (2:1.6.10-3) ... Setting up libharfbuzz0b:amd64 (2.6.7-1) ... Setting up libqt5sensors5:amd64 (5.14.2-2) ... Setting up libgcc-10-dev-armhf-cross (10.2.0-3cross2) ... Setting up libwacom2:amd64 (1.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-3) ... Setting up libavahi-client3:armhf (0.8-3) ... Setting up libllvm9:amd64 (1:9.0.1-14) ... Setting up cpp-arm-linux-gnueabihf (4:10.1.0-1) ... Setting up libgstreamer1.0-0:amd64 (1.18.0-3) ... Setcap worked! gst-ptp-helper is not suid! Setting up libdrm-amdgpu1:amd64 (2.4.102-1) ... Setting up libdrm-amdgpu1:armhf (2.4.102-1) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.14-2) ... Setting up libxcb-dri3-0:armhf (1.14-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libdrm-nouveau2:amd64 (2.4.102-1) ... Setting up libdrm-nouveau2:armhf (2.4.102-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up libxdamage1:armhf (1:1.1.5-2) ... Setting up libxcb1-dev:armhf (1.14-2) ... Setting up libgbm1:amd64 (20.1.7-1) ... Setting up libgbm1:armhf (20.1.7-1) ... Setting up gcc-10-arm-linux-gnueabihf (10.2.0-3cross2) ... Setting up libstdc++-10-dev-armhf-cross (10.2.0-3cross2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.66.0-1) ... /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 47: /usr/lib/arm-linux-gnueabihf/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 50: /usr/lib/arm-linux-gnueabihf/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.102-1) ... Setting up libdrm-radeon1:armhf (2.4.102-1) ... Setting up libclang1-9 (1:9.0.1-14) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up qdoc-qt5 (5.14.2-3) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libqt5positioning5:amd64 (5.14.2+dfsg-2) ... Setting up libdrm-intel1:amd64 (2.4.102-1) ... Setting up libgl1-mesa-dri:amd64 (20.1.7-1) ... Setting up libx11-dev:armhf (2:1.6.10-3) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libgstreamer-plugins-base1.0-0:amd64 (1.18.0-2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libqt5network5:amd64 (5.14.2+dfsg-6) ... Setting up dpkg-dev (1.20.5) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libinput-bin (1.16.1-1) ... Setting up g++-10-arm-linux-gnueabihf (10.2.0-3cross2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libllvm10:armhf (1:10.0.1-5) ... Setting up libqt5sql5:amd64 (5.14.2+dfsg-6) ... Setting up libgcc-9-dev:armhf (9.3.0-18) ... Setting up qtbase5-dev-tools (5.14.2+dfsg-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libqt5xml5:amd64 (5.14.2+dfsg-6) ... Setting up libegl-mesa0:amd64 (20.1.7-1) ... Setting up libegl-mesa0:armhf (20.1.7-1) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libxfixes3:armhf (1:5.0.3-2) ... Setting up libqt5qml5:amd64 (5.14.2+dfsg-3) ... Setting up qtattributionsscanner-qt5 (5.14.2-3) ... Setting up libqt5webchannel5:amd64 (5.14.2-2) ... Setting up libqt5core5a:armhf (5.14.2+dfsg-6) ... Setting up libxext-dev:armhf (2:1.3.3-1+b2) ... Setting up libcups2:amd64 (2.3.3-3) ... Setting up libcups2:armhf (2.3.3-3) ... Setting up libqt5dbus5:armhf (5.14.2+dfsg-6) ... Setting up libegl1:amd64 (1.3.2-1) ... Setting up libegl1:armhf (1.3.2-1) ... Setting up build-essential (12.8) ... Setting up libharfbuzz0b:armhf (2.6.7-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libqt5test5:armhf (5.14.2+dfsg-6) ... Setting up libqt5concurrent5:armhf (5.14.2+dfsg-6) ... Setting up libgudev-1.0-0:armhf (233-1) ... Setting up gcc-arm-linux-gnueabihf (4:10.1.0-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up g++-arm-linux-gnueabihf (4:10.1.0-1) ... Setting up libinput10:amd64 (1.16.1-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libqt5qmlmodels5:amd64 (5.14.2+dfsg-3) ... Setting up libglx-mesa0:amd64 (20.1.7-1) ... Setting up libqt5sql5-sqlite:amd64 (5.14.2+dfsg-6) ... Setting up libstdc++-9-dev:armhf (9.3.0-18) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up po-debconf (1.0.21) ... Setting up libgl1-mesa-dri:armhf (20.1.7-1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libqt5network5:armhf (5.14.2+dfsg-6) ... Setting up libqt5sql5:armhf (5.14.2+dfsg-6) ... Setting up libqt5xml5:armhf (5.14.2+dfsg-6) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libwacom2:armhf (1.5-1) ... Setting up libinput10:armhf (1.16.1-1) ... Setting up libglx-mesa0:armhf (20.1.7-1) ... Setting up libglx0:armhf (1.3.2-1) ... Setting up libqt5gui5:amd64 (5.14.2+dfsg-6) ... Setting up libqt5gui5:armhf (5.14.2+dfsg-6) ... Setting up libqt5widgets5:amd64 (5.14.2+dfsg-6) ... Setting up libqt5widgets5:armhf (5.14.2+dfsg-6) ... Setting up libqt5help5:amd64 (5.14.2-3) ... Setting up libqt5printsupport5:amd64 (5.14.2+dfsg-6) ... Setting up libqt5printsupport5:armhf (5.14.2+dfsg-6) ... Setting up libgl1:armhf (1.3.2-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libglx-dev:armhf (1.3.2-1) ... Setting up libqt5quick5:amd64 (5.14.2+dfsg-3) ... Setting up libgl-dev:armhf (1.3.2-1) ... Setting up libqt5designer5:amd64 (5.14.2-3) ... Setting up libegl-dev:armhf (1.3.2-1) ... Setting up qhelpgenerator-qt5 (5.14.2-3) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha4-5) ... Setting up libqt5designercomponents5:amd64 (5.14.2-3) ... Setting up libqt5quickwidgets5:amd64 (5.14.2+dfsg-3) ... Setting up qt5-assistant (5.14.2-3) ... Setting up qttools5-dev-tools (5.14.2-3) ... Setting up libgles-dev:armhf (1.3.2-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up qtbase5-dev:armhf (5.14.2+dfsg-6) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-10-amd64 #1 SMP Debian 4.19.132-1 (2020-07-24) amd64 (x86_64) Toolchain package versions: binutils_2.35-3 dpkg-dev_1.20.5 g++-10_10.2.0-7 gcc-10_10.2.0-7 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-7 libstdc++-10-dev-armhf-cross_10.2.0-3cross2 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-7 libstdc++6-armhf-cross_10.2.0-3cross2 linux-libc-dev_5.8.7-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-3 binutils-arm-linux-gnueabihf_2.35-3 binutils-common_2.35-3 binutils-x86-64-linux-gnu_2.35-3 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-3 cpp_4:10.1.0-1 cpp-10_10.2.0-7 cpp-10-arm-linux-gnueabihf_10.2.0-3cross2 cpp-8_8.4.0-4 cpp-arm-linux-gnueabihf_4:10.1.0-1 cross-config_2.6.15-3.1 crossbuild-essential-armhf_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.1.0-1 g++-10_10.2.0-7 g++-10-arm-linux-gnueabihf_10.2.0-3cross2 g++-arm-linux-gnueabihf_4:10.1.0-1 gcc_4:10.1.0-1 gcc-10_10.2.0-7 gcc-10-arm-linux-gnueabihf_10.2.0-3cross2 gcc-10-arm-linux-gnueabihf-base_10.2.0-3cross2 gcc-10-base_10.2.0-7 gcc-10-cross-base_10.2.0-3cross2 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-18 gcc-arm-linux-gnueabihf_4:10.1.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iso-codes_4.5.0-1 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan5_9.3.0-18 libasan6_10.2.0-7 libasan6-armhf-cross_10.2.0-3cross2 libatomic1_10.2.0-7 libatomic1-armhf-cross_10.2.0-3cross2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libavahi-client3_0.8-3 libavahi-common-data_0.8-3 libavahi-common3_0.8-3 libbinutils_2.35-3 libblkid1_2.36-3 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3 libc-dev-bin_2.31-3 libc6_2.31-3 libc6-armhf-cross_2.31-1cross2 libc6-dev_2.31-3 libc6-dev-armhf-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcap2-bin_1:2.43-1 libcc1-0_10.2.0-7 libclang1-9_1:9.0.1-14 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35-3 libctf0_2.35-3 libcups2_2.3.3-3 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.20-1 libdebconfclient0_0.253 libdebhelper-perl_13.2.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdouble-conversion3_3.1.5-5 libdpkg-perl_1.20.5 libdrm-amdgpu1_2.4.102-1 libdrm-common_2.4.102-1 libdrm-intel1_2.4.102-1 libdrm-nouveau2_2.4.102-1 libdrm-radeon1_2.4.102-1 libdrm2_2.4.102-1 libdw1_0.180-1+b1 libedit2_3.1-20191231-1 libegl-dev_1.3.2-1 libegl-mesa0_20.1.7-1 libegl1_1.3.2-1 libelf1_0.180-1+b1 libevdev2_1.9.1+dfsg-1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-3 libgbm1_20.1.7-1 libgcc-10-dev_10.2.0-7 libgcc-10-dev-armhf-cross_10.2.0-3cross2 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-7 libgcc-s1-armhf-cross_10.2.0-3cross2 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgl-dev_1.3.2-1 libgl1_1.3.2-1 libgl1-mesa-dri_20.1.7-1 libglapi-mesa_20.1.7-1 libgles-dev_1.3.2-1 libgles1_1.3.2-1 libgles2_1.3.2-1 libglib2.0-0_2.66.0-1 libglvnd0_1.3.2-1 libglx-dev_1.3.2-1 libglx-mesa0_20.1.7-1 libglx0_1.3.2-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-2 libgomp1_10.2.0-7 libgomp1-armhf-cross_10.2.0-3cross2 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.17-10 libgstreamer-plugins-base1.0-0_1.18.0-2 libgstreamer1.0-0_1.18.0-3 libgudev-1.0-0_233-1 libharfbuzz0b_2.6.7-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libhyphen0_2.8.8-7 libice6_2:1.0.9-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libinput-bin_1.16.1-1 libinput10_1.16.1-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-7 libjpeg62-turbo_1:2.0.5-1.1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 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libqt5qml5_5.14.2+dfsg-3 libqt5qmlmodels5_5.14.2+dfsg-3 libqt5quick5_5.14.2+dfsg-3 libqt5quickwidgets5_5.14.2+dfsg-3 libqt5sensors5_5.14.2-2 libqt5sql5_5.14.2+dfsg-6 libqt5sql5-sqlite_5.14.2+dfsg-6 libqt5test5_5.14.2+dfsg-6 libqt5webchannel5_5.14.2-2 libqt5webkit5_5.212.0~alpha4-5 libqt5widgets5_5.14.2+dfsg-6 libqt5xml5_5.14.2+dfsg-6 libquadmath0_10.2.0-7 libseccomp2_2.4.3-1+b1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsensors-config_1:3.6.0-2 libsensors5_1:3.6.0-2 libsepol1_3.1-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-7 libstdc++-10-dev-armhf-cross_10.2.0-3cross2 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-7 libstdc++6-armhf-cross_10.2.0-3cross2 libsub-override-perl_0.09-2 libsystemd0_246.5-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.2.0-7 libubsan1_10.2.0-7 libubsan1-armhf-cross_10.2.0-3cross2 libuchardet0_0.0.7-1 libudev1_246.5-1 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libxkbcommon0_0.10.0-1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6 libxshmfence1_1.3-1 libxslt1.1_1.1.34-4 libxxf86vm1_1:1.1.4-1+b2 libyaml-perl_1.30-1 libz3-4_4.8.8-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.7-1 linux-libc-dev-armhf-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 qdoc-qt5_5.14.2-3 qhelpgenerator-qt5_5.14.2-3 qt5-assistant_5.14.2-3 qt5-qmake_5.14.2+dfsg-6 qt5-qmake-bin_5.14.2+dfsg-6 qtattributionsscanner-qt5_5.14.2-3 qtbase5-dev_5.14.2+dfsg-6 qtbase5-dev-tools_5.14.2+dfsg-6 qtchooser_66-2 qttools5-dev-tools_5.14.2-3 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 shared-mime-info_1.15-1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-3 x11-common_1:7.7+20 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xkb-data_2.29-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clustalx Binary: clustalx Architecture: any Version: 2.1+lgpl-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.clustal.org/clustal2/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/clustalx Vcs-Git: https://salsa.debian.org/med-team/clustalx.git Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Package-List: clustalx deb science optional arch=any Checksums-Sha1: 63196a4e113a22e5e575f223d76b7406f4f70795 341649 clustalx_2.1+lgpl.orig.tar.gz d44f5076a1045f934c8186b52f55f50659882736 14908 clustalx_2.1+lgpl-8.debian.tar.xz Checksums-Sha256: e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 341649 clustalx_2.1+lgpl.orig.tar.gz cd42104fc76a3722f447927cf3f76eab0c82dae85db390994c3b98807cff6c29 14908 clustalx_2.1+lgpl-8.debian.tar.xz Files: 5b1f2f1cc8e939411ab0f934cafa072a 341649 clustalx_2.1+lgpl.orig.tar.gz d325a98eef7ecd7ac616d7d5045ef7d6 14908 clustalx_2.1+lgpl-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxy7eoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFzzA/+LzlrjGK5noZ8NwEOOZhabzxW3g4yY9Lb nmArwOrGvM+LI09bOJ/DfL8lGqDSJ5CMpcM1zuFmDbXEOQ+zxW6eK6ZoHrBGefWS fjJc79wyNkAh2OroGeTkpLt0woycp6DwQX1MXARIZEq8xTDKZ0Z7GSgCn32ut63M 2nOCHE4y2eo31U4jpYZzQNDH/8UABen1hpty2QdfUCLoWQ2NfYnUW81vLKZNOziW 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clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-c5ff4ad8-68ba-458f-aabe-44fd8a61a9f2 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f moc_* dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure arm-linux-gnueabihf-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] 48 | void AlignmentParameters::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 588 | for(i = 0; i < len && i < gapMask->size(); i++) | ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 645 | for (i = 0; i < len && i < _secStructMask->size();i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 652 | for(i = 0; i < len && i < ssMask.size(); i++) | ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] 781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) | ~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] 170 | bool blackAndWhite; | ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] 161 | std::vector* selectedColoredRes; | ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] 65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) | ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 225 | for(unsigned int j = 0; j < lengthLongestSeq; j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 235 | if(code >= 0 && code < conservationPixmaps->size()) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 268 | if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 280 | if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) | ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] 215 | int codeForSpace = clustalw::userParameters->resIndex( | ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 333 | if(i < secStructPixmaps->size() && i < secStructInfo.size()) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:344:51: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 344 | fontMetrics.width(secStructInfo[i])/2, | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 569 | if(selectedRes >= selectedColoredRes->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 689 | for(int j = 1; j <= strongGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 693 | for(int j = 1; j <= weakGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 700 | if((i + _fRes - 1 < (*alignment)[j].size()) && | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 701 | (i + _fRes - 1 < (*alignment)[_fSeq].size())) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 725 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 737 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 760 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 771 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 878 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 927 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1039 | for(int j = 0; j < aminoAcid.size(); j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:1051:61: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1051 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1079:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1079 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1089:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1089 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1099:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1099 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1118:42: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1118 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from AlignOutputFileNames.cpp:16: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from BootstrapTreeDialog.cpp:8: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] 74 | // tr("colorrules not found in the parameter file, using\ | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 85 | QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 160 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] 174 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] 157 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] 158 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 197 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] 211 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] 194 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] 195 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 229 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 238 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 251 | if(colorNum > 0 && colorNum - 1 < colorPar.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void ColumnScoreParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function ‘std::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 147 | catch(ifstream::failure e) | ^ HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] 61 | int i, number, nlines; | ^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 180 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 198 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:208:73: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 208 | (fontMetrics.width(QString::number(rulerNum))) / 2; | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qwidget.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qframe.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qlabel.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ HistogramWidget.cpp:241:80: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 241 | (fontMetrics.width(QString::number(0))) / 2, yPos, boxWidth, | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qwidget.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qframe.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qlabel.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void LowScoringSegParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] 198 | void MainWindow::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] 1454 | void MainWindow::writeViewer1AsPostscript(int type) | ~~~~^~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] 74 | void PairwiseParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(res.isLetter() && resNumber.size() > i - data->firstSeq) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 307 | if(res.isLetter() && resNumber.size() > seq) | ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 421 | if(res.isLetter() && resNumber.size() > i) | ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] 55 | int err; | ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] 73 | int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] 74 | int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 587 | if(data->nameHeader.size() > ix) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 730 | for(i = fr; i <= lr && i < ruler.length(); i++) | ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 789 | for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] 781 | int psX, psY, curveBottom; | ^~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] 375 | QRect redrawRect = event->rect(); | ^~~~~~~~~~ SeqNameWidget.cpp: In member function ‘int SeqNameWidget::setMaxNameLength()’: SeqNameWidget.cpp:443:65: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 443 | int length = fontMetrics.width(QString(name.c_str())); | ^ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SeqNameWidget.cpp:58: /usr/include/arm-linux-gnueabihf/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from TreeOutputFileNames.cpp:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer_impl.h:70, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 162 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 837 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] 1715 | SeqArray::iterator posToAddTo = sectionToRealign.begin(); | ^~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 512 | bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 535 | string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 673 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 868 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1027 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1156 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1445 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1560 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2095 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2102 | catch(exception e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’: clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2351 | catch(VectorOutOfRange e) | ^ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 155 | auto_ptr fileParser; // Means we dont need to delete it! | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 426 | void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)’: clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 555 | catch(exception ex) | ^~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 34 | vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 199 | Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 444 | void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] 446 | int &structPenalties, int length) | ~~~~^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 240 | void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function ‘std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds] 106 | delim[1] = 0; | ~~~~~~~^ clustalW/general/ClustalWResources.cpp:104:10: note: while referencing ‘delim’ 104 | char delim[1]; | ^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:72, from clustalW/general/../alignment/Alignment.h:36, from clustalW/general/Stats.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:67, from clustalW/general/../alignment/Alignment.h:36, from clustalW/general/Stats.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h: In member function ‘void clustalw::Stats::logAlignedSeqStats(clustalw::Alignment*)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:72, from clustalW/general/../alignment/Alignment.h:36, from clustalW/general/Stats.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc: In member function ‘void clustalw::Stats::logInputSeqStats(clustalw::Alignment*)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] 33 | UserParameters::UserParameters(bool log) | ~~~~~^~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 251 | int n; | ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] 519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 221 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from clustalW/general/Utility.cpp:18: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from clustalW/general/Utility.cpp:18: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In member function ‘double clustalw::Utility::median(std::vector)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’: clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 41 | catch(bad_alloc) | ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] 520 | clustalObj->getHelp('C'); | ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here 521 | case 'Q': | ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1190 | system(lin1.c_str()); | ~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 170 | int count; | ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | tmpnam (buffer); | ~~~~~~~^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] 340 | int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] 359 | string phylipName) | ~~~~~~~^~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function ‘void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)’: clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] 372 | if ((ix < 0) || (ix > _maxAA)) | ~~~^~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1657 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1717 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1103 | return (maxRes); | ^ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:72, from clustalW/tree/NJTree.h:9, from clustalW/tree/NJTree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:67, from clustalW/tree/NJTree.h:9, from clustalW/tree/NJTree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h: In member function ‘virtual void clustalw::NJTree::generateTree(clustalw::PhyloTree*, clustalw::DistMatrix*, clustalw::SeqInfo*, std::ofstream*)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | auto_ptr Tree::createSets(int firstSeq, int lastSeq) | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 280 | auto_ptr progAlignSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 31 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 103 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 195 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 200 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 208 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 214 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 439 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 445 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 485 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 490 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 503 | auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 506 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 17 | auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 21 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 27 | auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/10/locale:43, from /usr/arm-linux-gnueabihf/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -dM -E -o moc_predefs.h /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:10: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_AlignOutputFileNames.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:10: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_BootstrapTreeDialog.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include FileDialog.h -o moc_FileDialog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include mainwindow.h -o moc_mainwindow.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SearchForString.h -o moc_SearchForString.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:10: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_TreeOutputFileNames.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/10 -I/usr/arm-linux-gnueabihf/include/c++/10/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/10/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/10/include -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:10: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/memory:83, from moc_WritePostscriptFile.cpp:9: /usr/arm-linux-gnueabihf/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o /usr/lib/arm-linux-gnueabihf/libQt5Widgets.so /usr/lib/arm-linux-gnueabihf/libQt5Gui.so /usr/lib/arm-linux-gnueabihf/libQt5Xml.so /usr/lib/arm-linux-gnueabihf/libQt5Core.so -lGLESv2 -lpthread /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/clustalx/usr/bin/clustalx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-8_armhf.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-8_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../clustalx_2.1+lgpl-8_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-09-14T19:04:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-8_armhf.changes: ---------------------------------- Format: 1.8 Date: Sun, 24 Feb 2019 20:04:40 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 2.1+lgpl-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Closes: 923120 Changes: clustalx (2.1+lgpl-8) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. . [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_configure pass cross flags to qmake. Closes: #923120 . [ Andreas Tille ] * Standards-Version: 4.3.0 Checksums-Sha1: e603710d6321dd2b2a3d19b00b9f85426384c9a4 12948664 clustalx-dbgsym_2.1+lgpl-8_armhf.deb a168d3a458f2d74ada1e2fda548020a1d4e8e39a 9328 clustalx_2.1+lgpl-8_armhf.buildinfo 64123816354a78077f3e183f55754de29ac81f66 393716 clustalx_2.1+lgpl-8_armhf.deb Checksums-Sha256: 776f58f9c2cfd9e3a730327271b9cc7db60e4473da10fccb182f521a14b8a589 12948664 clustalx-dbgsym_2.1+lgpl-8_armhf.deb 8d0550dc85f710c73f4acbadd4b0d9ceff0b6dde6d0d75e17150fc0effa04cb8 9328 clustalx_2.1+lgpl-8_armhf.buildinfo df95003dd7e1299c1a82625468d02bc09178cf1fcef279533f3ea29744d29ea8 393716 clustalx_2.1+lgpl-8_armhf.deb Files: 58f7600daa1074b60c0ca863ad269c6f 12948664 debug optional clustalx-dbgsym_2.1+lgpl-8_armhf.deb bed41463f40c396c4299fa7e1e238422 9328 science optional clustalx_2.1+lgpl-8_armhf.buildinfo 650d5f6472e7b9ef37741d8b62788d7c 393716 science optional clustalx_2.1+lgpl-8_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalx Binary: clustalx clustalx-dbgsym Architecture: armhf Version: 2.1+lgpl-8 Checksums-Md5: 58f7600daa1074b60c0ca863ad269c6f 12948664 clustalx-dbgsym_2.1+lgpl-8_armhf.deb 650d5f6472e7b9ef37741d8b62788d7c 393716 clustalx_2.1+lgpl-8_armhf.deb Checksums-Sha1: e603710d6321dd2b2a3d19b00b9f85426384c9a4 12948664 clustalx-dbgsym_2.1+lgpl-8_armhf.deb 64123816354a78077f3e183f55754de29ac81f66 393716 clustalx_2.1+lgpl-8_armhf.deb Checksums-Sha256: 776f58f9c2cfd9e3a730327271b9cc7db60e4473da10fccb182f521a14b8a589 12948664 clustalx-dbgsym_2.1+lgpl-8_armhf.deb df95003dd7e1299c1a82625468d02bc09178cf1fcef279533f3ea29744d29ea8 393716 clustalx_2.1+lgpl-8_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 14 Sep 2020 19:04:37 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-7), binutils (= 2.35-3), binutils-common (= 2.35-3), binutils-x86-64-linux-gnu (= 2.35-3), bsdextrautils (= 2.36-3), bsdutils (= 1:2.36-3), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-3), cpp (= 4:10.1.0-1), cpp-10 (= 10.2.0-7), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1), debianutils (= 4.11.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), fontconfig (= 2.13.1-4.2), fontconfig-config (= 2.13.1-4.2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.1.0-1), g++-10 (= 10.2.0-7), gcc (= 4:10.1.0-1), gcc-10 (= 10.2.0-7), gcc-10-base (= 10.2.0-7), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), iso-codes (= 4.5.0-1), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-7), libatomic1 (= 10.2.0-7), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libavahi-client3 (= 0.8-3), libavahi-common-data (= 0.8-3), libavahi-common3 (= 0.8-3), libbinutils (= 2.35-3), libblkid1 (= 2.36-3), libbrotli1 (= 1.0.9-2), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-3), libc-dev-bin (= 2.31-3), libc6 (= 2.31-3), libc6-dev (= 2.31-3), libcap-ng0 (= 0.7.9-2.2), libcap2 (= 1:2.43-1), libcap2-bin (= 1:2.43-1), libcc1-0 (= 10.2.0-7), libclang1-9 (= 1:9.0.1-14), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35-3), libctf0 (= 2.35-3), libcups2 (= 2.3.3-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdbus-1-3 (= 1.12.20-1), libdebconfclient0 (= 0.253), libdebhelper-perl (= 13.2.1), libdouble-conversion3 (= 3.1.5-5), libdpkg-perl (= 1.20.5), libdrm-amdgpu1 (= 2.4.102-1), libdrm-common (= 2.4.102-1), libdrm-intel1 (= 2.4.102-1), libdrm-nouveau2 (= 2.4.102-1), libdrm-radeon1 (= 2.4.102-1), libdrm2 (= 2.4.102-1), libdw1 (= 0.180-1+b1), libedit2 (= 3.1-20191231-1), libegl-dev (= 1.3.2-1), libegl-mesa0 (= 20.1.7-1), libegl1 (= 1.3.2-1), libelf1 (= 0.180-1+b1), libevdev2 (= 1.9.1+dfsg-1), libexpat1 (= 2.2.9-1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libfontconfig1 (= 2.13.1-4.2), libfreetype6 (= 2.10.2+dfsg-3), libgbm1 (= 20.1.7-1), libgcc-10-dev (= 10.2.0-7), libgcc-s1 (= 10.2.0-7), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgl-dev (= 1.3.2-1), libgl1 (= 1.3.2-1), libgl1-mesa-dri (= 20.1.7-1), libglapi-mesa (= 20.1.7-1), libgles-dev (= 1.3.2-1), libgles1 (= 1.3.2-1), libgles2 (= 1.3.2-1), libglib2.0-0 (= 2.66.0-1), libglvnd0 (= 1.3.2-1), libglx-dev (= 1.3.2-1), libglx-mesa0 (= 20.1.7-1), libglx0 (= 1.3.2-1), libgmp10 (= 2:6.2.0+dfsg-6), libgnutls30 (= 3.6.15-2), libgomp1 (= 10.2.0-7), libgpg-error0 (= 1.38-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.17-10), libgstreamer-plugins-base1.0-0 (= 1.18.0-2), libgstreamer1.0-0 (= 1.18.0-3), libgudev-1.0-0 (= 233-1), libharfbuzz0b (= 2.6.7-1), libhogweed6 (= 3.6-2), libhyphen0 (= 2.8.8-7), libice6 (= 2:1.0.9-2), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-1), libinput-bin (= 1.16.1-1), libinput10 (= 1.16.1-1), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-7), libjpeg62-turbo (= 1:2.0.5-1.1), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), libllvm10 (= 1:10.0.1-5), libllvm9 (= 1:9.0.1-14), liblsan0 (= 10.2.0-7), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmd4c0 (= 0.4.5-1), libmount1 (= 2.36-3), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libmtdev1 (= 1.1.6-1), libnettle8 (= 3.6-2), liborc-0.4-0 (= 1:0.4.32-1), libp11-kit0 (= 0.23.21-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpciaccess0 (= 0.16-1), libpcre2-16-0 (= 10.34-7), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpng16-16 (= 1.6.37-2), libpthread-stubs0-dev (= 0.4-1), libqt5concurrent5 (= 5.14.2+dfsg-6), libqt5core5a (= 5.14.2+dfsg-6), libqt5dbus5 (= 5.14.2+dfsg-6), libqt5designer5 (= 5.14.2-3), libqt5designercomponents5 (= 5.14.2-3), libqt5gui5 (= 5.14.2+dfsg-6), libqt5help5 (= 5.14.2-3), libqt5network5 (= 5.14.2+dfsg-6), libqt5positioning5 (= 5.14.2+dfsg-2), libqt5printsupport5 (= 5.14.2+dfsg-6), libqt5qml5 (= 5.14.2+dfsg-3), libqt5qmlmodels5 (= 5.14.2+dfsg-3), libqt5quick5 (= 5.14.2+dfsg-3), libqt5quickwidgets5 (= 5.14.2+dfsg-3), libqt5sensors5 (= 5.14.2-2), libqt5sql5 (= 5.14.2+dfsg-6), libqt5sql5-sqlite (= 5.14.2+dfsg-6), libqt5test5 (= 5.14.2+dfsg-6), libqt5webchannel5 (= 5.14.2-2), libqt5webkit5 (= 5.212.0~alpha4-5), libqt5widgets5 (= 5.14.2+dfsg-6), libqt5xml5 (= 5.14.2+dfsg-6), libquadmath0 (= 10.2.0-7), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.1-2), libsensors-config (= 1:3.6.0-2), libsensors5 (= 1:3.6.0-2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36-3), libsqlite3-0 (= 3.33.0-1), libssl1.1 (= 1.1.1g-1), libstdc++-10-dev (= 10.2.0-7), libstdc++6 (= 10.2.0-7), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.5-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-7), libubsan1 (= 10.2.0-7), libuchardet0 (= 0.0.7-1), libudev1 (= 246.5-1), libunistring2 (= 0.9.10-4), libunwind8 (= 1.3.2-2), libuuid1 (= 2.36-3), libvulkan-dev (= 1.2.148.1-1), libvulkan1 (= 1.2.148.1-1), libwacom-common (= 1.5-1), libwacom2 (= 1.5-1), libwayland-client0 (= 1.18.0-2~exp1.1), libwayland-server0 (= 1.18.0-2~exp1.1), libwebp6 (= 0.6.1-2+b1), libwoff1 (= 1.0.2-1+b1), libx11-6 (= 2:1.6.10-3), libx11-data (= 2:1.6.10-3), libx11-dev (= 2:1.6.10-3), libx11-xcb1 (= 2:1.6.10-3), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-dri2-0 (= 1.14-2), libxcb-dri3-0 (= 1.14-2), libxcb-glx0 (= 1.14-2), libxcb-icccm4 (= 0.4.1-1.1), libxcb-image0 (= 0.4.0-1+b2), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present0 (= 1.14-2), libxcb-randr0 (= 1.14-2), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.14-2), libxcb-shape0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb-sync1 (= 1.14-2), libxcb-util0 (= 0.3.8-3+b2), libxcb-xfixes0 (= 1.14-2), libxcb-xinerama0 (= 1.14-2), libxcb-xinput0 (= 1.14-2), libxcb-xkb1 (= 1.14-2), libxcb1 (= 1.14-2), libxcb1-dev (= 1.14-2), libxdamage1 (= 1:1.1.5-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxfixes3 (= 1:5.0.3-2), libxkbcommon-x11-0 (= 0.10.0-1), libxkbcommon0 (= 0.10.0-1), libxml2 (= 2.9.10+dfsg-6), libxshmfence1 (= 1.3-1), libxslt1.1 (= 1.1.34-4), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.8-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.7-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), qdoc-qt5 (= 5.14.2-3), qhelpgenerator-qt5 (= 5.14.2-3), qt5-assistant (= 5.14.2-3), qt5-qmake (= 5.14.2+dfsg-6), qt5-qmake-bin (= 5.14.2+dfsg-6), qtattributionsscanner-qt5 (= 5.14.2-3), qtbase5-dev (= 5.14.2+dfsg-6), qtbase5-dev-tools (= 5.14.2+dfsg-6), qtchooser (= 66-2), qttools5-dev-tools (= 5.14.2-3), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), shared-mime-info (= 1.15-1), sysvinit-utils (= 2.96-5), tar (= 1.30+dfsg-7), ucf (= 3.0043), util-linux (= 2.36-3), x11-common (= 1:7.7+20), x11proto-core-dev (= 2020.1-1), x11proto-dev (= 2020.1-1), x11proto-xext-dev (= 2020.1-1), xkb-data (= 2.29-2), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1551035080" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-8_armhf.deb ------------------------------------ new Debian package, version 2.0. size 12948664 bytes: control archive=540 bytes. 382 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-8 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 12899 Depends: clustalx (= 2.1+lgpl-8) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: 7935f265165f95a7220321c9f1644e0b65321942 drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/79/ -rw-r--r-- root/root 13198080 2019-02-24 19:04 ./usr/lib/debug/.build-id/79/35f265165f95a7220321c9f1644e0b65321942.debug drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-8_armhf.deb ----------------------------- new Debian package, version 2.0. size 393716 bytes: control archive=1452 bytes. 1547 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-8 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 925 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/bin/ -rwxr-xr-x root/root 835716 2019-02-24 19:04 ./usr/bin/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2019-02-24 19:04 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/applications/ -rw-r--r-- root/root 876 2019-02-24 19:04 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2019-02-24 19:04 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 4511 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1826 2019-02-24 19:04 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2019-02-24 19:04 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2019-02-24 19:04 ./usr/share/mime/packages/clustalx.xml lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [549 B] Get:5 copy:/<>/apt_archive ./ Packages [636 B] Fetched 2148 B in 0s (85.1 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 6738 kB of archives. After this operation, 20.5 MB of additional disk space will be used. 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http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-1 [83.4 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.94.0 [1281 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6738 kB in 0s (30.0 MB/s) Selecting previously unselected package readline-common. (Reading database ... 28101 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package gpg. Preparing to unpack .../05-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libaliased-perl. 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Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libcpanel-json-xs-perl (4.23-1) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up unzip (6.0-25) ... Setting up libyaml-libyaml-perl (0.82+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b2) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.018+ds-1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004002-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up lzip (1.21-8) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libparams-util-perl (1.07-3+b5) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libdata-validate-domain-perl (0.10-1) ... Setting up libproc-processtable-perl (0.59-2) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up lzop (1.04-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b5) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b7) ... Setting up libperlio-gzip-perl (0.19-1+b6) ... Setting up readline-common (8.0-4) ... Setting up libhtml-html5-entities-perl (0.004-1) ... Setting up libsereal-decoder-perl (4.018+ds-1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (1.76-2) ... Setting up libemail-address-xs-perl (1.04-1+b2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.010006-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.94.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-3) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 134672 Build-Time: 297 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 50 Job: clustalx_2.1+lgpl-8 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 358 Source-Version: 2.1+lgpl-8 Space: 134672 Status: successful Version: 2.1+lgpl-8 -------------------------------------------------------------------------------- Finished at 2020-09-14T19:04:37Z Build needed 00:05:58, 134672k disk space