sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | clustalx 2.1+lgpl-9 (armel) Sun, 02 Jan 2022 19:31:46 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-9 Source Version: 2.1+lgpl-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-85a2a63a-2893-4fa7-9c60-8ec0202ea335' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-uakVIz/resolver-9GWuEQ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-01-02-1401.40-F-2022-01-02-0801.33.pdiff [19.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-01-02-1401.40-F-2022-01-02-0801.33.pdiff [20.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-01-02-1401.40-F-2022-01-02-0801.33.pdiff [19.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-01-02-1401.40-F-2022-01-02-0801.33.pdiff [20.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armel Packages [8474 kB] Fetched 8806 kB in 4s (2358 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libctf-nobfd0 libctf0 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5247 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libctf0 amd64 2.37-10.1 [93.7 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libctf-nobfd0 amd64 2.37-10.1 [155 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.37-10.1 [62.3 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.37-10.1 [2070 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.37-10.1 [579 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.37-10.1 [2287 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5247 kB in 0s (101 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10579 files and directories currently installed.) Preparing to unpack .../0-libctf0_2.37-10.1_amd64.deb ... Unpacking libctf0:amd64 (2.37-10.1) over (2.37-10) ... Preparing to unpack .../1-libctf-nobfd0_2.37-10.1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.37-10.1) over (2.37-10) ... Preparing to unpack .../2-binutils_2.37-10.1_amd64.deb ... Unpacking binutils (2.37-10.1) over (2.37-10) ... Preparing to unpack .../3-binutils-x86-64-linux-gnu_2.37-10.1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.37-10.1) over (2.37-10) ... Preparing to unpack .../4-libbinutils_2.37-10.1_amd64.deb ... Unpacking libbinutils:amd64 (2.37-10.1) over (2.37-10) ... Preparing to unpack .../5-binutils-common_2.37-10.1_amd64.deb ... Unpacking binutils-common:amd64 (2.37-10.1) over (2.37-10) ... Setting up binutils-common:amd64 (2.37-10.1) ... Setting up libctf-nobfd0:amd64 (2.37-10.1) ... Setting up libbinutils:amd64 (2.37-10.1) ... Setting up libctf0:amd64 (2.37-10.1) ... Setting up binutils-x86-64-linux-gnu (2.37-10.1) ... Setting up binutils (2.37-10.1) ... Processing triggers for libc-bin (2.33-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (dsc) [2084 B] Get:2 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (tar) [342 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (diff) [15.2 kB] Fetched 359 kB in 0s (4029 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-uakVIz/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-uakVIz' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [417 B] Get:5 copy:/<>/apt_archive ./ Packages [509 B] Fetched 1883 B in 0s (70.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-base:armel gcc-11-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libavahi-client3 libavahi-client3:armel libavahi-common-data libavahi-common-data:armel libavahi-common3 libavahi-common3:armel libblkid1:armel libbrotli1 libbrotli1:armel libbsd0 libbsd0:armel libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcap2:armel libcap2-bin libclang1-13 libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libcups2 libcups2:armel libdbus-1-3 libdbus-1-3:armel libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:armel libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:armel libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:armel libdrm-radeon1 libdrm-radeon1:armel libdrm2 libdrm2:armel libdw1 libedit2 libedit2:armel libegl-dev:armel libegl-mesa0 libegl-mesa0:armel libegl1 libegl1:armel libelf1 libelf1:armel libevdev2 libevdev2:armel libexpat1 libexpat1:armel libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:armel libfreetype6 libfreetype6:armel libgbm1 libgbm1:armel libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgcrypt20:armel libgl-dev:armel libgl1 libgl1:armel libgl1-mesa-dri libgl1-mesa-dri:armel libglapi-mesa libglapi-mesa:armel libgles-dev:armel libgles1:armel libgles2:armel libglib2.0-0 libglib2.0-0:armel libglvnd0 libglvnd0:armel libglx-dev:armel libglx-mesa0 libglx-mesa0:armel libglx0 libglx0:armel libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgpg-error0:armel libgraphite2-3 libgraphite2-3:armel libgssapi-krb5-2:armel libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:armel libharfbuzz0b libharfbuzz0b:armel libhogweed6:armel libhyphen0 libice6 libice6:armel libicu67 libicu67:armel libidn2-0:armel libinput-bin libinput10 libinput10:armel libio-string-perl libjpeg62-turbo libjpeg62-turbo:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libllvm12 libllvm12:armel libllvm13 liblocale-gettext-perl liblz4-1:armel liblzma5:armel libmagic-mgc libmagic1 libmd0 libmd0:armel libmd4c0 libmd4c0:armel libmount1:armel libmtdev1 libmtdev1:armel libnettle8:armel libnsl-dev libnsl-dev:armel libnsl2:armel liborc-0.4-0 libp11-kit0:armel libpciaccess0 libpcre2-16-0 libpcre2-16-0:armel libpcre2-8-0:armel libpcre3:armel libperl5.32 libpipeline1 libpng16-16 libpng16-16:armel libpthread-stubs0-dev:armel libqt5concurrent5:armel libqt5core5a libqt5core5a:armel libqt5dbus5 libqt5dbus5:armel libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:armel libqt5help5 libqt5network5 libqt5network5:armel libqt5positioning5 libqt5printsupport5 libqt5printsupport5:armel libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:armel libqt5sql5-sqlite libqt5test5:armel libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:armel libqt5xml5 libqt5xml5:armel libselinux1:armel libsensors-config libsensors5 libsensors5:armel libsigsegv2 libsm6 libsm6:armel libsqlite3-0 libssl1.1:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsystemd0:armel libtasn1-6:armel libtinfo6:armel libtirpc-dev libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libudev1:armel libunistring2:armel libunwind8 libuuid1:armel libvulkan-dev:armel libvulkan1 libvulkan1:armel libwacom-common libwacom2 libwacom2:armel libwayland-client0 libwayland-client0:armel libwayland-server0 libwayland-server0:armel libwebp6 libwoff1 libx11-6 libx11-6:armel libx11-data libx11-dev:armel libx11-xcb1 libx11-xcb1:armel libxau-dev:armel libxau6 libxau6:armel libxcb-dri2-0 libxcb-dri2-0:armel libxcb-dri3-0 libxcb-dri3-0:armel libxcb-glx0 libxcb-glx0:armel libxcb-icccm4 libxcb-icccm4:armel libxcb-image0 libxcb-image0:armel libxcb-keysyms1 libxcb-keysyms1:armel libxcb-present0 libxcb-present0:armel libxcb-randr0 libxcb-randr0:armel libxcb-render-util0 libxcb-render-util0:armel libxcb-render0 libxcb-render0:armel libxcb-shape0 libxcb-shape0:armel libxcb-shm0 libxcb-shm0:armel libxcb-sync1 libxcb-sync1:armel libxcb-util1 libxcb-util1:armel libxcb-xfixes0 libxcb-xfixes0:armel libxcb-xinerama0 libxcb-xinerama0:armel libxcb-xinput0 libxcb-xinput0:armel libxcb-xkb1 libxcb-xkb1:armel libxcb1 libxcb1:armel libxcb1-dev:armel libxdmcp-dev:armel libxdmcp6 libxdmcp6:armel libxext-dev:armel libxext6 libxext6:armel libxfixes3 libxfixes3:armel libxkbcommon-x11-0 libxkbcommon-x11-0:armel libxkbcommon0 libxkbcommon0:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:armel libxrender1 libxrender1:armel libxshmfence1 libxshmfence1:armel libxslt1.1 libxxf86vm1 libxxf86vm1:armel libyaml-perl libz3-4 libz3-4:armel libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.32 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:armel qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:armel qtbase5-dev-tools qtchooser qttools5-dev-tools rpcsvc-proto sensible-utils shared-mime-info ucf x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel glibc-doc manpages-dev:armel cups-common cups-common:armel gnupg git bzr rng-tools:armel gnutls-bin:armel krb5-doc:armel krb5-user:armel libvisual-0.4-plugins gstreamer1.0-tools cryptsetup-bin:armel pciutils libthai0 libthai0:armel qt5-image-formats-plugins qtwayland5 qt5-image-formats-plugins:armel qtwayland5:armel qt5-qmltooling-plugins lm-sensors lm-sensors:armel libstdc++-11-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:armel libxcb-doc:armel libxext-doc:armel libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl qt5-doc default-libmysqlclient-dev:armel firebird-dev:armel libpq-dev:armel libsqlite3-dev:armel unixodbc-dev:armel Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libpam-cap dbus dbus:armel libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data xdg-user-dirs libglib2.0-data:armel xdg-user-dirs:armel libgpg-error-l10n:armel gstreamer1.0-plugins-base krb5-locales:armel qttranslations5-l10n qttranslations5-l10n:armel libqt5svg5 qt5-gtk-platformtheme libqt5svg5:armel qt5-gtk-platformtheme:armel geoclue-2.0 libqt5sql5-sqlite:armel | libqt5sql5-mysql:armel | libqt5sql5-odbc:armel | libqt5sql5-psql:armel | libqt5sql5-tds:armel | libqt5sql5-ibase:armel libltdl-dev uuid-runtime:armel mesa-vulkan-drivers | vulkan-icd mesa-vulkan-drivers:armel | vulkan-icd:armel libwacom-bin libwacom-bin:armel libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl libqt5opengl5-dev:armel The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-base:armel gcc-11-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libavahi-client3 libavahi-client3:armel libavahi-common-data libavahi-common-data:armel libavahi-common3 libavahi-common3:armel libblkid1:armel libbrotli1 libbrotli1:armel libbsd0 libbsd0:armel libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcap2:armel libcap2-bin libclang1-13 libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libcups2 libcups2:armel libdbus-1-3 libdbus-1-3:armel libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:armel libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:armel libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:armel libdrm-radeon1 libdrm-radeon1:armel libdrm2 libdrm2:armel libdw1 libedit2 libedit2:armel libegl-dev:armel libegl-mesa0 libegl-mesa0:armel libegl1 libegl1:armel libelf1 libelf1:armel libevdev2 libevdev2:armel libexpat1 libexpat1:armel libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:armel libfreetype6 libfreetype6:armel libgbm1 libgbm1:armel libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgcrypt20:armel libgl-dev:armel libgl1 libgl1:armel libgl1-mesa-dri libgl1-mesa-dri:armel libglapi-mesa libglapi-mesa:armel libgles-dev:armel libgles1:armel libgles2:armel libglib2.0-0 libglib2.0-0:armel libglvnd0 libglvnd0:armel libglx-dev:armel libglx-mesa0 libglx-mesa0:armel libglx0 libglx0:armel libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgpg-error0:armel libgraphite2-3 libgraphite2-3:armel libgssapi-krb5-2:armel libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:armel libharfbuzz0b libharfbuzz0b:armel libhogweed6:armel libhyphen0 libice6 libice6:armel libicu67 libicu67:armel libidn2-0:armel libinput-bin libinput10 libinput10:armel libio-string-perl libjpeg62-turbo libjpeg62-turbo:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libllvm12 libllvm12:armel libllvm13 liblocale-gettext-perl liblz4-1:armel liblzma5:armel libmagic-mgc libmagic1 libmd0 libmd0:armel libmd4c0 libmd4c0:armel libmount1:armel libmtdev1 libmtdev1:armel libnettle8:armel libnsl-dev libnsl-dev:armel libnsl2:armel liborc-0.4-0 libp11-kit0:armel libpciaccess0 libpcre2-16-0 libpcre2-16-0:armel libpcre2-8-0:armel libpcre3:armel libperl5.32 libpipeline1 libpng16-16 libpng16-16:armel libpthread-stubs0-dev:armel libqt5concurrent5:armel libqt5core5a libqt5core5a:armel libqt5dbus5 libqt5dbus5:armel libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:armel libqt5help5 libqt5network5 libqt5network5:armel libqt5positioning5 libqt5printsupport5 libqt5printsupport5:armel libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:armel libqt5sql5-sqlite libqt5test5:armel libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:armel libqt5xml5 libqt5xml5:armel libselinux1:armel libsensors-config libsensors5 libsensors5:armel libsigsegv2 libsm6 libsm6:armel libsqlite3-0 libssl1.1:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsystemd0:armel libtasn1-6:armel libtinfo6:armel libtirpc-dev libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libudev1:armel libunistring2:armel libunwind8 libuuid1:armel libvulkan-dev:armel libvulkan1 libvulkan1:armel libwacom-common libwacom2 libwacom2:armel libwayland-client0 libwayland-client0:armel libwayland-server0 libwayland-server0:armel libwebp6 libwoff1 libx11-6 libx11-6:armel libx11-data libx11-dev:armel libx11-xcb1 libx11-xcb1:armel libxau-dev:armel libxau6 libxau6:armel libxcb-dri2-0 libxcb-dri2-0:armel libxcb-dri3-0 libxcb-dri3-0:armel libxcb-glx0 libxcb-glx0:armel libxcb-icccm4 libxcb-icccm4:armel libxcb-image0 libxcb-image0:armel libxcb-keysyms1 libxcb-keysyms1:armel libxcb-present0 libxcb-present0:armel libxcb-randr0 libxcb-randr0:armel libxcb-render-util0 libxcb-render-util0:armel libxcb-render0 libxcb-render0:armel libxcb-shape0 libxcb-shape0:armel libxcb-shm0 libxcb-shm0:armel libxcb-sync1 libxcb-sync1:armel libxcb-util1 libxcb-util1:armel libxcb-xfixes0 libxcb-xfixes0:armel libxcb-xinerama0 libxcb-xinerama0:armel libxcb-xinput0 libxcb-xinput0:armel libxcb-xkb1 libxcb-xkb1:armel libxcb1 libxcb1:armel libxcb1-dev:armel libxdmcp-dev:armel libxdmcp6 libxdmcp6:armel libxext-dev:armel libxext6 libxext6:armel libxfixes3 libxfixes3:armel libxkbcommon-x11-0 libxkbcommon-x11-0:armel libxkbcommon0 libxkbcommon0:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:armel libxrender1 libxrender1:armel libxshmfence1 libxshmfence1:armel libxslt1.1 libxxf86vm1 libxxf86vm1:armel libyaml-perl libz3-4 libz3-4:armel libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.32 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:armel qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:armel qtbase5-dev-tools qtchooser qttools5-dev-tools rpcsvc-proto sbuild-build-depends-main-dummy:armel sensible-utils shared-mime-info ucf x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:armel 0 upgraded, 372 newly installed, 0 to remove and 0 not upgraded. Need to get 414 MB of archives. After this operation, 1588 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.70.2-1 [1403 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libdw1 amd64 0.186-1 [237 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libunwind8 amd64 1.3.2-2 [54.5 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2-bin amd64 1:2.44-1 [32.6 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.18.5-1 [2232 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liborc-0.4-0 amd64 1:0.4.32-1 [192 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 iso-codes all 4.8.0-1 [2778 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.18.5-1 [2159 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5+b1 [701 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdouble-conversion3 amd64 3.1.5-7 [40.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-16-0 amd64 10.39-3 [237 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5core5a amd64 5.15.2+dfsg-14 [1830 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.2-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.11.1+dfsg-1 [400 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.109-2 [15.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm2 amd64 2.4.109-2 [44.6 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libglvnd0 amd64 1.3.4-2+b1 [51.7 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-server0 amd64 1.19.0-2+b1 [34.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgbm1 amd64 21.2.6-1 [76.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libglapi-mesa amd64 21.2.6-1 [75.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-client0 amd64 1.19.0-2+b1 [27.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.7.2-2 [311 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.7.2-2+b1 [772 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-xcb1 amd64 2:1.7.2-2+b1 [203 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libegl-mesa0 amd64 21.2.6-1 [144 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libegl1 amd64 1.3.4-2+b1 [35.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.109-2 [29.1 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-intel1 amd64 2.4.109-2 [72.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.109-2 [27.4 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.109-2 [30.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm12 amd64 1:12.0.1-17+b1 [19.5 MB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libvulkan1 amd64 1.2.189.0-2 [104 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1-mesa-dri amd64 21.2.6-1 [10.3 MB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libglx-mesa0 amd64 21.2.6-1 [184 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libglx0 amd64 1.3.4-2+b1 [36.5 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1 amd64 1.3.4-2+b1 [89.6 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libevdev2 amd64 1.12.0+dfsg-1 [34.4 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libgudev-1.0-0 amd64 237-2 [15.1 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom-common all 1.12-1 [52.9 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom2 amd64 1.12-1 [22.2 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libinput-bin amd64 1.19.2-1 [26.0 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libinput10 amd64 1.19.2-1 [125 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libdbus-1-3 amd64 1.12.20-3 [219 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5dbus5 amd64 5.15.2+dfsg-14 [240 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5network5 amd64 5.15.2+dfsg-14 [699 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-1+b3 [24.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-randr0 amd64 1.14-3 [113 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shape0 amd64 1.14-3 [102 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinerama0 amd64 1.14-3 [101 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinput0 amd64 1.14-3 [126 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xkb1 amd64 1.14-3 [126 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 xkb-data all 2.33-1 [748 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon0 amd64 1.3.1-1 [109 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.3.1-1 [17.5 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5gui5 amd64 5.15.2+dfsg-14 [3412 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5positioning5 amd64 5.15.2+dfsg-3 [208 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libcups2 amd64 2.3.3op2-7 [349 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5widgets5 amd64 5.15.2+dfsg-14 [2394 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5printsupport5 amd64 5.15.2+dfsg-14 [231 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qml5 amd64 5.15.2+dfsg-9 [1348 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qmlmodels5 amd64 5.15.2+dfsg-9 [198 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quick5 amd64 5.15.2+dfsg-9 [1590 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sensors5 amd64 5.15.2-2 [112 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webchannel5 amd64 5.15.2-2 [58.0 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.37.1-1 [819 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libwoff1 amd64 1.0.2-1+b1 [42.4 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 libxslt1.1 amd64 1.1.34-4 [239 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha4-14 [11.7 MB] Get:125 http://debian.oregonstate.edu/debian unstable/main armel gcc-11-base armel 11.2.0-13 [207 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armel libgcc-s1 armel 11.2.0-13 [38.5 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.33-1 [2360 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armel libcap2 armel 1:2.44-1 [21.1 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armel libgpg-error0 armel 1.43-1 [71.2 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armel libgcrypt20 armel 1.9.4-5 [582 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main armel liblz4-1 armel 1.9.3-2 [53.3 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main armel liblzma5 armel 5.2.5-2 [159 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main armel libzstd1 armel 1.4.8+dfsg-3 [273 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main armel libsystemd0 armel 249.7-1 [387 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.4.0-4+b1 [200 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.41-2 [295 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.41-2 [129 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.41-2 [66.9 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-5 [143 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.4-2 [36.2 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-4 [1354 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1.1 [823 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.37-10.1 [3136 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.27-1 [104 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.33-1 [2272 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-13 [1978 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-13 [10.2 MB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.21.1 [1568 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.21.1 [2171 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi-base amd64 11.2.0-9cross1 [206 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [48.3 MB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:11.2.0-2 [17.0 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.33-1cross1 [1130 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armel-cross all 11.2.0-9cross1 [38.5 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 11.2.0-9cross1 [88.5 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 11.2.0-9cross1 [8812 B] Get:172 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armel-cross all 11.2.0-9cross1 [1937 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 11.2.0-9cross1 [426 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 11.2.0-9cross1 [798 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-armel-cross all 11.2.0-9cross1 [703 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [54.8 MB] Get:177 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:11.2.0-2 [1460 B] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.15.5-1cross1 [1541 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.33-1cross1 [1810 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-armel-cross all 11.2.0-9cross1 [1954 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [52.4 MB] Get:182 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:11.2.0-2 [1176 B] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.9 [6704 B] Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.6 [193 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.6 [1054 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.4.0-4+b1 [2703 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 11.2.0-13 [9016 B] Get:211 http://debian.oregonstate.edu/debian unstable/main armel libavahi-common-data armel 0.8-5 [123 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main armel libavahi-common3 armel 0.8-5 [56.2 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main armel libdbus-1-3 armel 1.12.20-3 [194 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main armel libavahi-client3 armel 0.8-5 [58.0 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main armel libblkid1 armel 2.37.2-5 [188 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main armel libbrotli1 armel 1.0.9-2+b3 [278 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main armel libmd0 armel 1.0.4-1 [29.2 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main armel libbsd0 armel 0.11.3-1 [103 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.15.5-2 [1422 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.27-1 [97.2 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.27-1 [113 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.46.5-1 [74.9 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.18.3-7 [62.4 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.18.3-7 [108 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6.1-2 [14.5 kB] Get:226 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1m-1 [1275 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.18.3-7 [315 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.18.3-7 [142 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main armel libtirpc3 armel 1.3.2-2 [71.6 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main armel libtirpc-dev armel 1.3.2-2 [182 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:233 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.33-1 [1857 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm13 amd64 1:13.0.0-9+b2 [20.1 MB] Get:235 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-13 amd64 1:13.0.0-9+b2 [6182 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main armel libgmp10 armel 2:6.2.1+dfsg-3 [506 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main armel libnettle8 armel 3.7.3-1 [281 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main armel libhogweed6 armel 3.7.3-1 [307 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main armel libunistring2 armel 0.9.10-6 [360 kB] Get:240 http://debian.oregonstate.edu/debian unstable/main armel libidn2-0 armel 2.3.2-2 [92.2 kB] Get:241 http://debian.oregonstate.edu/debian unstable/main armel libffi8 armel 3.4.2-3 [21.1 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main armel libp11-kit0 armel 0.24.0-6 [325 kB] Get:243 http://debian.oregonstate.edu/debian unstable/main armel libtasn1-6 armel 4.18.0-4 [50.6 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main armel libgnutls30 armel 3.7.2-4 [1274 kB] Get:245 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-2 [84.7 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main armel libcups2 armel 2.3.3op2-7 [313 kB] Get:247 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 11.2.0-13 [467 kB] Get:248 http://debian.oregonstate.edu/debian unstable/main armel libdouble-conversion3 armel 3.1.5-7 [37.8 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main armel libdrm2 armel 2.4.109-2 [41.7 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main armel libdrm-amdgpu1 armel 2.4.109-2 [28.4 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main armel libdrm-nouveau2 armel 2.4.109-2 [25.9 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main armel libdrm-radeon1 armel 2.4.109-2 [29.9 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main armel libtinfo6 armel 6.3-1 [335 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main armel libedit2 armel 3.1-20210910-1 [81.2 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main armel libglvnd0 armel 1.3.4-2+b1 [53.8 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main armel libexpat1 armel 2.4.2-1 [80.7 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main armel libwayland-server0 armel 1.19.0-2+b1 [29.3 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main armel libgbm1 armel 21.2.6-1 [74.0 kB] Get:259 http://debian.oregonstate.edu/debian unstable/main armel libglapi-mesa armel 21.2.6-1 [82.9 kB] Get:260 http://debian.oregonstate.edu/debian unstable/main armel libwayland-client0 armel 1.19.0-2+b1 [23.5 kB] Get:261 http://debian.oregonstate.edu/debian unstable/main armel libxau6 armel 1:1.0.9-1 [19.0 kB] Get:262 http://debian.oregonstate.edu/debian unstable/main armel libxdmcp6 armel 1:1.1.2-3 [25.0 kB] Get:263 http://debian.oregonstate.edu/debian unstable/main armel libxcb1 armel 1.14-3 [136 kB] Get:264 http://debian.oregonstate.edu/debian unstable/main armel libx11-6 armel 2:1.7.2-2+b1 [711 kB] Get:265 http://debian.oregonstate.edu/debian unstable/main armel libx11-xcb1 armel 2:1.7.2-2+b1 [203 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main armel libxcb-dri2-0 armel 1.14-3 [103 kB] Get:267 http://debian.oregonstate.edu/debian unstable/main armel libxcb-dri3-0 armel 1.14-3 [102 kB] Get:268 http://debian.oregonstate.edu/debian unstable/main armel libxcb-present0 armel 1.14-3 [101 kB] Get:269 http://debian.oregonstate.edu/debian unstable/main armel libxcb-sync1 armel 1.14-3 [104 kB] Get:270 http://debian.oregonstate.edu/debian unstable/main armel libxcb-xfixes0 armel 1.14-3 [105 kB] Get:271 http://debian.oregonstate.edu/debian unstable/main armel libxshmfence1 armel 1.3-1 [9208 B] Get:272 http://debian.oregonstate.edu/debian unstable/main armel libegl-mesa0 armel 21.2.6-1 [125 kB] Get:273 http://debian.oregonstate.edu/debian unstable/main armel libegl1 armel 1.3.4-2+b1 [31.6 kB] Get:274 http://debian.oregonstate.edu/debian unstable/main armel libxcb-glx0 armel 1.14-3 [117 kB] Get:275 http://debian.oregonstate.edu/debian unstable/main armel libxcb-shm0 armel 1.14-3 [101 kB] Get:276 http://debian.oregonstate.edu/debian unstable/main armel libxext6 armel 2:1.3.4-1 [47.9 kB] Get:277 http://debian.oregonstate.edu/debian unstable/main armel libxfixes3 armel 1:5.0.3-2 [20.7 kB] Get:278 http://debian.oregonstate.edu/debian unstable/main armel libxxf86vm1 armel 1:1.1.4-1+b2 [22.2 kB] Get:279 http://debian.oregonstate.edu/debian unstable/main armel libelf1 armel 0.186-1 [174 kB] Get:280 http://debian.oregonstate.edu/debian unstable/main armel libicu67 armel 67.1-7 [8285 kB] Get:281 http://debian.oregonstate.edu/debian unstable/main armel libxml2 armel 2.9.12+dfsg-5+b1 [583 kB] Get:282 http://debian.oregonstate.edu/debian unstable/main armel libz3-4 armel 4.8.12-1+b1 [5745 kB] Get:283 http://debian.oregonstate.edu/debian unstable/main armel libllvm12 armel 1:12.0.1-17+b1 [17.0 MB] Get:284 http://debian.oregonstate.edu/debian unstable/main armel libsensors5 armel 1:3.6.0-7 [50.9 kB] Get:285 http://debian.oregonstate.edu/debian unstable/main armel libvulkan1 armel 1.2.189.0-2 [84.8 kB] Get:286 http://debian.oregonstate.edu/debian unstable/main armel libgl1-mesa-dri armel 21.2.6-1 [5870 kB] Get:287 http://debian.oregonstate.edu/debian unstable/main armel libglx-mesa0 armel 21.2.6-1 [172 kB] Get:288 http://debian.oregonstate.edu/debian unstable/main armel libglx0 armel 1.3.4-2+b1 [27.1 kB] Get:289 http://debian.oregonstate.edu/debian unstable/main armel libgl1 armel 1.3.4-2+b1 [105 kB] Get:290 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:291 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2021.5-1 [599 kB] Get:292 http://debian.oregonstate.edu/debian unstable/main armel libxau-dev armel 1:1.0.9-1 [22.6 kB] Get:293 http://debian.oregonstate.edu/debian unstable/main armel libxdmcp-dev armel 1:1.1.2-3 [41.2 kB] Get:294 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:295 http://debian.oregonstate.edu/debian unstable/main armel libpthread-stubs0-dev armel 0.4-1 [5336 B] Get:296 http://debian.oregonstate.edu/debian unstable/main armel libxcb1-dev armel 1.14-3 [175 kB] Get:297 http://debian.oregonstate.edu/debian unstable/main armel libx11-dev armel 2:1.7.2-2+b1 [786 kB] Get:298 http://debian.oregonstate.edu/debian unstable/main armel libglx-dev armel 1.3.4-2+b1 [16.8 kB] Get:299 http://debian.oregonstate.edu/debian unstable/main armel libgl-dev armel 1.3.4-2+b1 [101 kB] Get:300 http://debian.oregonstate.edu/debian unstable/main armel libegl-dev armel 1.3.4-2+b1 [20.4 kB] Get:301 http://debian.oregonstate.edu/debian unstable/main armel libevdev2 armel 1.12.0+dfsg-1 [27.8 kB] Get:302 http://debian.oregonstate.edu/debian unstable/main armel libpng16-16 armel 1.6.37-3 [278 kB] Get:303 http://debian.oregonstate.edu/debian unstable/main armel libfreetype6 armel 2.11.1+dfsg-1 [338 kB] Get:304 http://debian.oregonstate.edu/debian unstable/main armel libuuid1 armel 2.37.2-5 [83.9 kB] Get:305 http://debian.oregonstate.edu/debian unstable/main armel libfontconfig1 armel 2.13.1-4.2 [330 kB] Get:306 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 11.2.0-13 [91.2 kB] Get:307 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 11.2.0-13 [799 kB] Get:308 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.4.0-4+b1 [640 kB] Get:309 http://debian.oregonstate.edu/debian unstable/main armel libgles1 armel 1.3.4-2+b1 [13.6 kB] Get:310 http://debian.oregonstate.edu/debian unstable/main armel libgles2 armel 1.3.4-2+b1 [20.7 kB] Get:311 http://debian.oregonstate.edu/debian unstable/main armel libgles-dev armel 1.3.4-2+b1 [50.9 kB] Get:312 http://debian.oregonstate.edu/debian unstable/main armel libpcre2-8-0 armel 10.39-3 [215 kB] Get:313 http://debian.oregonstate.edu/debian unstable/main armel libselinux1 armel 3.3-1+b1 [81.1 kB] Get:314 http://debian.oregonstate.edu/debian unstable/main armel libmount1 armel 2.37.2-5 [199 kB] Get:315 http://debian.oregonstate.edu/debian unstable/main armel libpcre3 armel 2:8.39-13 [317 kB] Get:316 http://debian.oregonstate.edu/debian unstable/main armel libglib2.0-0 armel 2.70.2-1 [1212 kB] Get:317 http://debian.oregonstate.edu/debian unstable/main armel libgraphite2-3 armel 1.3.14-1 [71.4 kB] Get:318 http://debian.oregonstate.edu/debian unstable/main armel libudev1 armel 249.7-1 [182 kB] Get:319 http://debian.oregonstate.edu/debian unstable/main armel libgudev-1.0-0 armel 237-2 [13.0 kB] Get:320 http://debian.oregonstate.edu/debian unstable/main armel libharfbuzz0b armel 2.7.4-1 [1435 kB] Get:321 http://debian.oregonstate.edu/debian unstable/main armel libice6 armel 2:1.0.10-1 [51.6 kB] Get:322 http://debian.oregonstate.edu/debian unstable/main armel libmtdev1 armel 1.1.6-1 [21.9 kB] Get:323 http://debian.oregonstate.edu/debian unstable/main armel libwacom2 armel 1.12-1 [19.4 kB] Get:324 http://debian.oregonstate.edu/debian unstable/main armel libinput10 armel 1.19.2-1 [110 kB] Get:325 http://debian.oregonstate.edu/debian unstable/main armel libjpeg62-turbo armel 1:2.1.2-1 [146 kB] Get:326 http://debian.oregonstate.edu/debian unstable/main armel libmd4c0 armel 0.4.8-1 [39.3 kB] Get:327 http://debian.oregonstate.edu/debian unstable/main armel libpcre2-16-0 armel 10.39-3 [202 kB] Get:328 http://debian.oregonstate.edu/debian unstable/main armel libqt5core5a armel 5.15.2+dfsg-14 [1541 kB] Get:329 http://debian.oregonstate.edu/debian unstable/main armel libqt5concurrent5 armel 5.15.2+dfsg-14 [71.2 kB] Get:330 http://debian.oregonstate.edu/debian unstable/main armel libqt5dbus5 armel 5.15.2+dfsg-14 [215 kB] Get:331 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5xml5 amd64 5.15.2+dfsg-14 [151 kB] Get:332 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designer5 amd64 5.15.2-5+b1 [2751 kB] Get:333 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designercomponents5 amd64 5.15.2-5+b1 [733 kB] Get:334 http://debian.oregonstate.edu/debian unstable/main armel libqt5network5 armel 5.15.2+dfsg-14 [610 kB] Get:335 http://debian.oregonstate.edu/debian unstable/main armel libsm6 armel 2:1.2.3-1 [33.1 kB] Get:336 http://debian.oregonstate.edu/debian unstable/main armel libxcb-icccm4 armel 0.4.1-1.1 [26.3 kB] Get:337 http://debian.oregonstate.edu/debian unstable/main armel libxcb-util1 armel 0.4.0-1+b1 [22.3 kB] Get:338 http://debian.oregonstate.edu/debian unstable/main armel libxcb-image0 armel 0.4.0-1+b3 [23.3 kB] Get:339 http://debian.oregonstate.edu/debian unstable/main armel libxcb-keysyms1 armel 0.4.0-1+b2 [15.9 kB] Get:340 http://debian.oregonstate.edu/debian unstable/main armel libxcb-randr0 armel 1.14-3 [112 kB] Get:341 http://debian.oregonstate.edu/debian unstable/main armel libxcb-render0 armel 1.14-3 [110 kB] Get:342 http://debian.oregonstate.edu/debian unstable/main armel libxcb-render-util0 armel 0.3.9-1+b1 [17.4 kB] Get:343 http://debian.oregonstate.edu/debian unstable/main armel libxcb-shape0 armel 1.14-3 [102 kB] Get:344 http://debian.oregonstate.edu/debian unstable/main armel libxcb-xinerama0 armel 1.14-3 [101 kB] Get:345 http://debian.oregonstate.edu/debian unstable/main armel libxcb-xinput0 armel 1.14-3 [123 kB] Get:346 http://debian.oregonstate.edu/debian unstable/main armel libxcb-xkb1 armel 1.14-3 [122 kB] Get:347 http://debian.oregonstate.edu/debian unstable/main armel libxkbcommon0 armel 1.3.1-1 [96.7 kB] Get:348 http://debian.oregonstate.edu/debian unstable/main armel libxkbcommon-x11-0 armel 1.3.1-1 [16.8 kB] Get:349 http://debian.oregonstate.edu/debian unstable/main armel libxrender1 armel 1:0.9.10-1 [31.3 kB] Get:350 http://debian.oregonstate.edu/debian unstable/main armel libqt5gui5 armel 5.15.2+dfsg-14 [2718 kB] Get:351 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5 amd64 5.15.2+dfsg-14 [150 kB] Get:352 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5help5 amd64 5.15.2-5+b1 [155 kB] Get:353 http://debian.oregonstate.edu/debian unstable/main armel libqt5widgets5 armel 5.15.2+dfsg-14 [2118 kB] Get:354 http://debian.oregonstate.edu/debian unstable/main armel libqt5printsupport5 armel 5.15.2+dfsg-14 [213 kB] Get:355 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.15.2+dfsg-9 [49.2 kB] Get:356 http://debian.oregonstate.edu/debian unstable/main armel libqt5sql5 armel 5.15.2+dfsg-14 [137 kB] Get:357 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.15.2+dfsg-14 [86.3 kB] Get:358 http://debian.oregonstate.edu/debian unstable/main armel libqt5test5 armel 5.15.2+dfsg-14 [158 kB] Get:359 http://debian.oregonstate.edu/debian unstable/main armel libqt5xml5 armel 5.15.2+dfsg-14 [137 kB] Get:360 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.4.0-4+b1 [1761 kB] Get:361 http://debian.oregonstate.edu/debian unstable/main armel libvulkan-dev armel 1.2.189.0-2 [783 kB] Get:362 http://debian.oregonstate.edu/debian unstable/main armel libxext-dev armel 2:1.3.4-1 [103 kB] Get:363 http://debian.oregonstate.edu/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:364 http://debian.oregonstate.edu/debian unstable/main amd64 qdoc-qt5 amd64 5.15.2-5+b1 [587 kB] Get:365 http://debian.oregonstate.edu/debian unstable/main amd64 qhelpgenerator-qt5 amd64 5.15.2-5+b1 [64.9 kB] Get:366 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-assistant amd64 5.15.2-5+b1 [358 kB] Get:367 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.2+dfsg-14 [1050 kB] Get:368 http://debian.oregonstate.edu/debian unstable/main armel qt5-qmake armel 5.15.2+dfsg-14 [250 kB] Get:369 http://debian.oregonstate.edu/debian unstable/main amd64 qtattributionsscanner-qt5 amd64 5.15.2-5+b1 [38.2 kB] Get:370 http://debian.oregonstate.edu/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.2+dfsg-14 [775 kB] Get:371 http://debian.oregonstate.edu/debian unstable/main armel qtbase5-dev armel 5.15.2+dfsg-14 [1096 kB] Get:372 http://debian.oregonstate.edu/debian unstable/main amd64 qttools5-dev-tools amd64 5.15.2-5+b1 [1029 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 414 MB in 3s (122 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... 10579 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../001-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../002-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../003-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../004-libglib2.0-0_2.70.2-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.70.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../005-libelf1_0.186-1_amd64.deb ... Unpacking libelf1:amd64 (0.186-1) ... 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No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.3.4-2+b1) ... Setting up libglvnd0:armel (1.3.4-2+b1) ... Setting up libssl1.1:armel (1.1.1m-1) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up libbrotli1:amd64 (1.0.9-2+b3) ... Setting up libbrotli1:armel (1.0.9-2+b3) ... Setting up libsqlite3-0:amd64 (3.37.1-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-7) ... Setting up libmagic1:amd64 (1:5.41-2) ... Setting up libunistring2:armel (0.9.10-6) ... Setting up linux-libc-dev:armel (5.15.5-2) ... Setting up gettext-base (0.21-4) ... Setting up xkb-data (2.33-1) ... Setting up zlib1g:armel (1:1.2.11.dfsg-2) ... Setting up libcrypt1:armel (1:4.4.27-1) ... Setting up libidn2-0:armel (2.3.2-2) ... Setting up libcom-err2:armel (1.46.5-1) ... Setting up file (1:5.41-2) ... Setting up libgomp1:armel (11.2.0-13) ... Setting up libunwind8:amd64 (1.3.2-2) ... Setting up libpthread-stubs0-dev:armel (0.4-1) ... Setting up libpcre2-16-0:amd64 (10.39-3) ... Setting up libpcre2-16-0:armel (10.39-3) ... Setting up libsystemd0:armel (249.7-1) ... Setting up libkrb5support0:armel (1.18.3-7) ... Setting up linux-libc-dev-armel-cross (5.15.5-1cross1) ... Setting up libcap2-bin (1:2.44-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libpcre3:armel (2:8.39-13) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up cpp-arm-linux-gnueabi (4:11.2.0-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libgles2:armel (1.3.4-2+b1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up libjpeg62-turbo:armel (1:2.1.2-1) ... Setting up qt5-qmake-bin (5.15.2+dfsg-14) ... Setting up libnettle8:armel (3.7.3-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up libgmp10:armel (2:6.2.1+dfsg-3) ... Setting up libavahi-common-data:amd64 (0.8-5) ... Setting up libavahi-common-data:armel (0.8-5) ... Setting up libgles1:armel (1.3.4-2+b1) ... Setting up libdbus-1-3:amd64 (1.12.20-3) ... Setting up libdbus-1-3:armel (1.12.20-3) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libpng16-16:armel (1.6.37-3) ... Setting up libatomic1:armel (11.2.0-13) ... Setting up libuuid1:armel (2.37.2-5) ... Setting up liborc-0.4-0:amd64 (1:0.4.32-1) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libsensors5:armel (1:3.6.0-7) ... Setting up libpcre2-8-0:armel (10.39-3) ... Setting up libk5crypto3:armel (1.18.3-7) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libglapi-mesa:amd64 (21.2.6-1) ... Setting up libglapi-mesa:armel (21.2.6-1) ... Setting up libmtdev1:amd64 (1.1.6-1) ... Setting up libmtdev1:armel (1.1.6-1) ... Setting up libvulkan1:amd64 (1.2.189.0-2) ... Setting up libvulkan1:armel (1.2.189.0-2) ... Setting up libc6-armel-cross (2.33-1cross1) ... Setting up libudev1:armel (249.7-1) ... Setting up libffi8:armel (3.4.2-3) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libmd0:armel (1.0.4-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libxshmfence1:armel (1.3-1) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1) ... Setting up libcrypt-dev:armel (1:4.4.27-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libtasn1-6:armel (4.18.0-4) ... Setting up libmd4c0:amd64 (0.4.8-1) ... Setting up libmd4c0:armel (0.4.8-1) ... Setting up libc6-dev:amd64 (2.33-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libkrb5-3:armel (1.18.3-7) ... Setting up libc6-dev-armel-cross (2.33-1cross1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libbsd0:armel (0.11.3-1) ... Setting up libdrm-common (2.4.109-2) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libelf1:armel (0.186-1) ... Setting up libevdev2:amd64 (1.12.0+dfsg-1) ... Setting up libevdev2:armel (1.12.0+dfsg-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ... Setting up libblkid1:armel (2.37.2-5) ... Setting up iso-codes (4.8.0-1) ... Setting up libstdc++6:armel (11.2.0-13) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libgudev-1.0-0:amd64 (237-2) ... Setting up qtchooser (66-2) ... Setting up libtinfo6:armel (6.3-1) ... Setting up gcc-9-base:armel (9.4.0-4+b1) ... Setting up libwacom-common (1.12-1) ... Setting up libxkbcommon0:amd64 (1.3.1-1) ... Setting up libxkbcommon0:armel (1.3.1-1) ... Setting up libwayland-client0:amd64 (1.19.0-2+b1) ... Setting up libwayland-client0:armel (1.19.0-2+b1) ... Setting up x11proto-dev (2021.5-1) ... Setting up libwayland-server0:armel (1.19.0-2+b1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libice6:armel (2:1.0.10-1) ... Setting up libdw1:amd64 (0.186-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxdmcp6:armel (1:1.1.2-3) ... Setting up libdouble-conversion3:armel (3.1.5-7) ... Setting up libvulkan-dev:armel (1.2.189.0-2) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb1:armel (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libhogweed6:armel (3.7.3-1) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libxcb-xfixes0:armel (1.14-3) ... Setting up libxau-dev:armel (1:1.0.9-1) ... Setting up libgomp1-armel-cross (11.2.0-9cross1) ... Setting up qt5-qmake:armel (5.15.2+dfsg-14) ... Setting up libxcb-xinput0:amd64 (1.14-3) ... Setting up libxcb-xinput0:armel (1.14-3) ... Setting up libwoff1:amd64 (1.0.2-1+b1) ... Setting up libicu67:armel (67.1-7) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libxcb-render0:armel (1.14-3) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libxcb-glx0:armel (1.14-3) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libedit2:armel (3.1-20210910-1) ... Setting up libgcc-s1-armel-cross (11.2.0-9cross1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-keysyms1:armel (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.14-3) ... Setting up libxcb-shape0:armel (1.14-3) ... Setting up libavahi-common3:amd64 (0.8-5) ... Setting up libavahi-common3:armel (0.8-5) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-render-util0:armel (0.3.9-1+b1) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libxcb-shm0:armel (1.14-3) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libxcb-icccm4:armel (0.4.1-1.1) ... Setting up libstdc++6-armel-cross (11.2.0-9cross1) ... Setting up libatomic1-armel-cross (11.2.0-9cross1) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libxcb-util1:armel (0.4.0-1+b1) ... Setting up libxcb-xkb1:amd64 (1.14-3) ... Setting up libxcb-xkb1:armel (1.14-3) ... Setting up libxcb-image0:amd64 (0.4.0-1+b3) ... Setting up libxcb-image0:armel (0.4.0-1+b3) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libxcb-present0:armel (1.14-3) ... Setting up libselinux1:armel (3.3-1+b1) ... Setting up libasan5:armel (9.4.0-4+b1) ... Setting up libxdmcp-dev:armel (1:1.1.2-3) ... Setting up perl (5.32.1-6) ... Setting up libz3-4:armel (4.8.12-1+b1) ... Setting up libxcb-xinerama0:amd64 (1.14-3) ... Setting up libxcb-xinerama0:armel (1.14-3) ... Setting up libfreetype6:amd64 (2.11.1+dfsg-1) ... Setting up libfreetype6:armel (2.11.1+dfsg-1) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libxcb-sync1:armel (1.14-3) ... Setting up libllvm12:amd64 (1:12.0.1-17+b1) ... Setting up libubsan1-armel-cross (11.2.0-9cross1) ... Setting up shared-mime-info (2.0-1) ... Setting up libp11-kit0:armel (0.24.0-6) ... Setting up libxkbcommon-x11-0:amd64 (1.3.1-1) ... Setting up libxkbcommon-x11-0:armel (1.3.1-1) ... Setting up libgssapi-krb5-2:armel (1.18.3-7) ... Setting up libllvm13:amd64 (1:13.0.0-9+b2) ... Setting up ucf (3.0043) ... Setting up libqt5core5a:amd64 (5.15.2+dfsg-14) ... Setting up libdpkg-perl (1.21.1) ... Setting up autoconf (2.71-2) ... Setting up libstdc++-11-dev:amd64 (11.2.0-13) ... Setting up libubsan1:armel (11.2.0-13) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up libxcb-dri2-0:armel (1.14-3) ... Setting up libdrm2:amd64 (2.4.109-2) ... Setting up libdrm2:armel (2.4.109-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libqt5dbus5:amd64 (5.15.2+dfsg-14) ... Setting up libmount1:armel (2.37.2-5) ... Setting up libxcb-randr0:amd64 (1.14-3) ... Setting up libxcb-randr0:armel (1.14-3) ... Setting up libxslt1.1:amd64 (1.1.34-4) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.7.2-2+b1) ... Setting up libx11-6:armel (2:1.7.2-2+b1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libqt5sensors5:amd64 (5.15.2-2) ... Setting up libwacom2:amd64 (1.12-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libsm6:armel (2:1.2.3-1) ... Setting up libxml2:armel (2.9.12+dfsg-5+b1) ... Setting up libavahi-client3:amd64 (0.8-5) ... Setting up libavahi-client3:armel (0.8-5) ... Setting up libgstreamer1.0-0:amd64 (1.18.5-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libasan6-armel-cross (11.2.0-9cross1) ... Setting up libdrm-amdgpu1:amd64 (2.4.109-2) ... Setting up libdrm-amdgpu1:armel (2.4.109-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:armel (1.3.2-2) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libxcb-dri3-0:armel (1.14-3) ... Setting up libx11-xcb1:amd64 (2:1.7.2-2+b1) ... Setting up libx11-xcb1:armel (2:1.7.2-2+b1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libdrm-nouveau2:amd64 (2.4.109-2) ... Setting up libdrm-nouveau2:armel (2.4.109-2) ... Setting up libgcc-11-dev-armel-cross (11.2.0-9cross1) ... Setting up libxcb1-dev:armel (1.14-3) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxrender1:armel (1:0.9.10-1) ... Setting up libgbm1:amd64 (21.2.6-1) ... Setting up libgbm1:armel (21.2.6-1) ... Setting up g++-11 (11.2.0-13) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armel (2.70.2-1) ... /var/lib/dpkg/info/libglib2.0-0:armel.postinst: 58: /usr/lib/arm-linux-gnueabi/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:armel.postinst: 59: /usr/lib/arm-linux-gnueabi/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.109-2) ... Setting up libdrm-radeon1:armel (2.4.109-2) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdebhelper-perl (13.6) ... Setting up libqt5positioning5:amd64 (5.15.2+dfsg-3) ... Setting up libdrm-intel1:amd64 (2.4.109-2) ... Setting up libgl1-mesa-dri:amd64 (21.2.6-1) ... Setting up libx11-dev:armel (2:1.7.2-2+b1) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libxext6:armel (2:1.3.4-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up libgstreamer-plugins-base1.0-0:amd64 (1.18.5-1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libqt5network5:amd64 (5.15.2+dfsg-14) ... Setting up dpkg-dev (1.21.1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxxf86vm1:armel (1:1.1.4-1+b2) ... Setting up libinput-bin (1.19.2-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt5sql5:amd64 (5.15.2+dfsg-14) ... Setting up libgcc-9-dev:armel (9.4.0-4+b1) ... Setting up dh-autoreconf (20) ... Setting up qtbase5-dev-tools (5.15.2+dfsg-14) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libclang1-13 (1:13.0.0-9+b2) ... Setting up libqt5xml5:amd64 (5.15.2+dfsg-14) ... Setting up libegl-mesa0:amd64 (21.2.6-1) ... Setting up libegl-mesa0:armel (21.2.6-1) ... Setting up libtirpc-dev:armel (1.3.2-2) ... Setting up libgnutls30:armel (3.7.2-4) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libxfixes3:armel (1:5.0.3-2) ... Setting up libqt5qml5:amd64 (5.15.2+dfsg-9) ... Setting up libllvm12:armel (1:12.0.1-17+b1) ... Setting up qtattributionsscanner-qt5 (5.15.2-5+b1) ... Setting up libqt5webchannel5:amd64 (5.15.2-2) ... Setting up libqt5core5a:armel (5.15.2+dfsg-14) ... Setting up libxext-dev:armel (2:1.3.4-1) ... Setting up libcups2:amd64 (2.3.3op2-7) ... Setting up libcups2:armel (2.3.3op2-7) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libstdc++-11-dev-armel-cross (11.2.0-9cross1) ... Setting up libqt5dbus5:armel (5.15.2+dfsg-14) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libegl1:amd64 (1.3.4-2+b1) ... Setting up libegl1:armel (1.3.4-2+b1) ... Setting up build-essential (12.9) ... Setting up libharfbuzz0b:armel (2.7.4-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfontconfig1:armel (2.13.1-4.2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libqt5test5:armel (5.15.2+dfsg-14) ... Setting up libqt5concurrent5:armel (5.15.2+dfsg-14) ... Setting up libgudev-1.0-0:armel (237-2) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libinput10:amd64 (1.19.2-1) ... Setting up gcc-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libqt5qmlmodels5:amd64 (5.15.2+dfsg-9) ... Setting up libglx-mesa0:amd64 (21.2.6-1) ... Setting up libqt5sql5-sqlite:amd64 (5.15.2+dfsg-14) ... Setting up libglx0:amd64 (1.3.4-2+b1) ... Setting up qdoc-qt5 (5.15.2-5+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libgl1-mesa-dri:armel (21.2.6-1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libqt5network5:armel (5.15.2+dfsg-14) ... Setting up libqt5sql5:armel (5.15.2+dfsg-14) ... Setting up libqt5xml5:armel (5.15.2+dfsg-14) ... Setting up libgl1:amd64 (1.3.4-2+b1) ... Setting up g++-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up gcc-arm-linux-gnueabi (4:11.2.0-2) ... Setting up libc6-dev:armel (2.33-1) ... Setting up libwacom2:armel (1.12-1) ... Setting up libinput10:armel (1.19.2-1) ... Setting up libglx-mesa0:armel (21.2.6-1) ... Setting up libstdc++-9-dev:armel (9.4.0-4+b1) ... Setting up libglx0:armel (1.3.4-2+b1) ... Setting up libqt5gui5:amd64 (5.15.2+dfsg-14) ... Setting up libqt5gui5:armel (5.15.2+dfsg-14) ... Setting up debhelper (13.6) ... Setting up libqt5widgets5:amd64 (5.15.2+dfsg-14) ... Setting up libqt5widgets5:armel (5.15.2+dfsg-14) ... Setting up libqt5help5:amd64 (5.15.2-5+b1) ... Setting up libqt5printsupport5:amd64 (5.15.2+dfsg-14) ... Setting up libqt5printsupport5:armel (5.15.2+dfsg-14) ... Setting up g++-arm-linux-gnueabi (4:11.2.0-2) ... Setting up libgl1:armel (1.3.4-2+b1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libglx-dev:armel (1.3.4-2+b1) ... Setting up libqt5quick5:amd64 (5.15.2+dfsg-9) ... Setting up libgl-dev:armel (1.3.4-2+b1) ... Setting up libqt5designer5:amd64 (5.15.2-5+b1) ... Setting up libegl-dev:armel (1.3.4-2+b1) ... Setting up qhelpgenerator-qt5 (5.15.2-5+b1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha4-14) ... Setting up libqt5designercomponents5:amd64 (5.15.2-5+b1) ... Setting up libqt5quickwidgets5:amd64 (5.15.2+dfsg-9) ... Setting up qt5-assistant (5.15.2-5+b1) ... Setting up qttools5-dev-tools (5.15.2-5+b1) ... Setting up libgles-dev:armel (1.3.4-2+b1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up qtbase5-dev:armel (5.15.2+dfsg-14) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armel (12.9) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.33-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-10.1 dpkg-dev_1.21.1 g++-11_11.2.0-13 gcc-11_11.2.0-13 libc6-dev_2.33-1 libstdc++-11-dev_11.2.0-13 libstdc++-11-dev-armel-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-4+b1 libstdc++6_11.2.0-13 libstdc++6-armel-cross_11.2.0-9cross1 linux-libc-dev_5.15.5-2 Package versions: adduser_3.118 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-5+b1 binutils_2.37-10.1 binutils-arm-linux-gnueabi_2.37-10.1 binutils-common_2.37-10.1 binutils-x86-64-linux-gnu_2.37-10.1 bsdextrautils_2.37.2-5 bsdutils_1:2.37.2-5 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-13 cpp-11-arm-linux-gnueabi_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-arm-linux-gnueabi_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-armel_12.9 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 e2fsprogs_1.46.5-1 fakeroot_1.26-1.1 fdisk_2.37.2-5 file_1:5.41-2 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2 g++-11_11.2.0-13 g++-11-arm-linux-gnueabi_11.2.0-9cross1 g++-arm-linux-gnueabi_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-13 gcc-11_11.2.0-13 gcc-11-arm-linux-gnueabi_11.2.0-9cross1 gcc-11-arm-linux-gnueabi-base_11.2.0-9cross1 gcc-11-base_11.2.0-13 gcc-11-cross-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-4+b1 gcc-arm-linux-gnueabi_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 iso-codes_4.8.0-1 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.13 libarchive-zip-perl_1.68-1 libasan5_9.4.0-4+b1 libasan6_11.2.0-13 libasan6-armel-cross_11.2.0-9cross1 libatomic1_11.2.0-13 libatomic1-armel-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1+b1 libavahi-client3_0.8-5 libavahi-common-data_0.8-5 libavahi-common3_0.8-5 libbinutils_2.37-10.1 libblkid1_2.37.2-5 libbrotli1_1.0.9-2+b3 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-1 libc-dev-bin_2.33-1 libc6_2.33-1 libc6-armel-cross_2.33-1cross1 libc6-dev_2.33-1 libc6-dev-armel-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_11.2.0-13 libclang1-13_1:13.0.0-9+b2 libcom-err2_1.46.5-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libctf-nobfd0_2.37-10.1 libctf0_2.37-10.1 libcups2_2.3.3op2-7 libdb5.3_5.3.28+dfsg1-0.8 libdbus-1-3_1.12.20-3 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdouble-conversion3_3.1.5-7 libdpkg-perl_1.21.1 libdrm-amdgpu1_2.4.109-2 libdrm-common_2.4.109-2 libdrm-intel1_2.4.109-2 libdrm-nouveau2_2.4.109-2 libdrm-radeon1_2.4.109-2 libdrm2_2.4.109-2 libdw1_0.186-1 libedit2_3.1-20210910-1 libegl-dev_1.3.4-2+b1 libegl-mesa0_21.2.6-1 libegl1_1.3.4-2+b1 libelf1_0.186-1 libevdev2_1.12.0+dfsg-1 libexpat1_2.4.2-1 libext2fs2_1.46.5-1 libfakeroot_1.26-1.1 libfdisk1_2.37.2-5 libffi6_3.2.1-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.11.1+dfsg-1 libgbm1_21.2.6-1 libgcc-11-dev_11.2.0-13 libgcc-11-dev-armel-cross_11.2.0-9cross1 libgcc-9-dev_9.4.0-4+b1 libgcc-s1_11.2.0-13 libgcc-s1-armel-cross_11.2.0-9cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgl-dev_1.3.4-2+b1 libgl1_1.3.4-2+b1 libgl1-mesa-dri_21.2.6-1 libglapi-mesa_21.2.6-1 libgles-dev_1.3.4-2+b1 libgles1_1.3.4-2+b1 libgles2_1.3.4-2+b1 libglib2.0-0_2.70.2-1 libglvnd0_1.3.4-2+b1 libglx-dev_1.3.4-2+b1 libglx-mesa0_21.2.6-1 libglx0_1.3.4-2+b1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-4 libgomp1_11.2.0-13 libgomp1-armel-cross_11.2.0-9cross1 libgpg-error0_1.43-1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libgstreamer-plugins-base1.0-0_1.18.5-1 libgstreamer1.0-0_1.18.5-1 libgudev-1.0-0_237-2 libharfbuzz0b_2.7.4-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libhyphen0_2.8.8-7 libice6_2:1.0.10-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libinput-bin_1.19.2-1 libinput10_1.19.2-1 libio-string-perl_1.08-3.1 libisl19_0.20-2 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po-debconf_1.0.21+nmu1 qdoc-qt5_5.15.2-5+b1 qhelpgenerator-qt5_5.15.2-5+b1 qt5-assistant_5.15.2-5+b1 qt5-qmake_5.15.2+dfsg-14 qt5-qmake-bin_5.15.2+dfsg-14 qtattributionsscanner-qt5_5.15.2-5+b1 qtbase5-dev_5.15.2+dfsg-14 qtbase5-dev-tools_5.15.2+dfsg-14 qtchooser_66-2 qttools5-dev-tools_5.15.2-5+b1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 shared-mime-info_2.0-1 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-5 x11-common_1:7.7+23 x11proto-dev_2021.5-1 xkb-data_2.33-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clustalx Binary: clustalx Architecture: any Version: 2.1+lgpl-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.clustal.org/clustal2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/clustalx Vcs-Git: https://salsa.debian.org/med-team/clustalx.git Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Package-List: clustalx deb science optional arch=any Checksums-Sha1: 63196a4e113a22e5e575f223d76b7406f4f70795 341649 clustalx_2.1+lgpl.orig.tar.gz b7b02b1250b121b5162e6aa0e43a931c1518401e 15224 clustalx_2.1+lgpl-9.debian.tar.xz Checksums-Sha256: e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 341649 clustalx_2.1+lgpl.orig.tar.gz a72891b756770c26939b8dc96afd800dd2156057a47caa5f4085b53d362e8011 15224 clustalx_2.1+lgpl-9.debian.tar.xz Files: 5b1f2f1cc8e939411ab0f934cafa072a 341649 clustalx_2.1+lgpl.orig.tar.gz 6a04d1877358fa582cf4897c5296c45c 15224 clustalx_2.1+lgpl-9.debian.tar.xz -----BEGIN PGP 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made Fri Dec 4 22:20:42 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./clustalx_2.1+lgpl-9.dsc dpkg-source: info: extracting clustalx in /<> dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-85a2a63a-2893-4fa7-9c60-8ec0202ea335 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f moc_* dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure arm-linux-gnueabi-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] 48 | void AlignmentParameters::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 588 | for(i = 0; i < len && i < gapMask->size(); i++) | ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 645 | for (i = 0; i < len && i < _secStructMask->size();i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 652 | for(i = 0; i < len && i < ssMask.size(); i++) | ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] 781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) | ~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] 170 | bool blackAndWhite; | ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] 161 | std::vector* selectedColoredRes; | ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] 65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) | ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 225 | for(unsigned int j = 0; j < lengthLongestSeq; j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 235 | if(code >= 0 && code < conservationPixmaps->size()) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 268 | if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 280 | if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) | ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] 215 | int codeForSpace = clustalw::userParameters->resIndex( | ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 333 | if(i < secStructPixmaps->size() && i < secStructInfo.size()) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:344:34: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 344 | fontMetrics.width(secStructInfo[i])/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 569 | if(selectedRes >= selectedColoredRes->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 689 | for(int j = 1; j <= strongGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 693 | for(int j = 1; j <= weakGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 700 | if((i + _fRes - 1 < (*alignment)[j].size()) && | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 701 | (i + _fRes - 1 < (*alignment)[_fSeq].size())) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 725 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 737 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 760 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 771 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 878 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 927 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1039 | for(int j = 0; j < aminoAcid.size(); j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:1051:49: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1051 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1079:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1079 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1089:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1089 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1099:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1099 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1118:30: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1118 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from AlignOutputFileNames.cpp:16: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from BootstrapTreeDialog.cpp:8: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] 74 | // tr("colorrules not found in the parameter file, using\ | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 85 | QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 160 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] 174 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] 157 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] 158 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 197 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] 211 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] 194 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] 195 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 229 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 238 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 251 | if(colorNum > 0 && colorNum - 1 < colorPar.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void ColumnScoreParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function ‘std::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 147 | catch(ifstream::failure e) | ^ HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] 61 | int i, number, nlines; | ^~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 180 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 198 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:208:47: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 208 | (fontMetrics.width(QString::number(rulerNum))) / 2; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qwidget.h:50, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qframe.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qlabel.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ HistogramWidget.cpp:241:61: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 241 | (fontMetrics.width(QString::number(0))) / 2, yPos, boxWidth, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qwidget.h:50, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qframe.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qlabel.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void LowScoringSegParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qdebug.h:54, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborcommon.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborvalue.h:45, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qcborarray.h:43, from /usr/include/arm-linux-gnueabi/qt5/QtCore/QtCore:38, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] 198 | void MainWindow::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] 1454 | void MainWindow::writeViewer1AsPostscript(int type) | ~~~~^~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] 74 | void PairwiseParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(res.isLetter() && resNumber.size() > i - data->firstSeq) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 307 | if(res.isLetter() && resNumber.size() > seq) | ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 421 | if(res.isLetter() && resNumber.size() > i) | ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] 55 | int err; | ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] 73 | int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] 74 | int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 587 | if(data->nameHeader.size() > ix) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 730 | for(i = fr; i <= lr && i < ruler.length(); i++) | ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 789 | for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] 781 | int psX, psY, curveBottom; | ^~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] 375 | QRect redrawRect = event->rect(); | ^~~~~~~~~~ SeqNameWidget.cpp: In member function ‘int SeqNameWidget::setMaxNameLength()’: SeqNameWidget.cpp:443:43: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 443 | int length = fontMetrics.width(QString(name.c_str())); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/arm-linux-gnueabi/qt5/QtGui/QtGui:26, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QtWidgets:3, from SeqNameWidget.cpp:58: /usr/include/arm-linux-gnueabi/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from TreeOutputFileNames.cpp:7: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/arm-linux-gnueabi/qt5/QtCore/qsharedpointer.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qpixmap.h:48, from /usr/include/arm-linux-gnueabi/qt5/QtGui/qicon.h:46, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/arm-linux-gnueabi/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 162 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 837 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetProfile1()’: clustalW/alignment/Alignment.cpp:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 47 | register int sl; /* which have code = gap_pos2 */ | ^~ clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetProfile2()’: clustalW/alignment/Alignment.cpp:122:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 122 | register int sl; /* which have code = gap_pos2 */ | ^~ clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetAlign()’: clustalW/alignment/Alignment.cpp:617:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 617 | register int sl; | ^~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] 1715 | SeqArray::iterator posToAddTo = sectionToRealign.begin(); | ^~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 512 | bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 535 | string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 673 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 868 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1027 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1156 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1445 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1560 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2095 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2102 | catch(exception e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’: clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2351 | catch(VectorOutOfRange e) | ^ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp clustalW/fileInput/FileParser.cpp: In member function ‘void clustalw::FileParser::fillCharTab()’: clustalW/fileInput/FileParser.cpp:37:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 37 | register int i; | ^ clustalW/fileInput/FileParser.cpp:38:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 38 | register char c; | ^ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 155 | auto_ptr fileParser; // Means we dont need to delete it! | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 426 | void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)’: clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 555 | catch(exception ex) | ^~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 34 | vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 199 | Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 444 | void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] 446 | int &structPenalties, int length) | ~~~~^~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 240 | void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function ‘std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds] 106 | delim[1] = 0; | ~~~~~~~^ clustalW/general/ClustalWResources.cpp:104:10: note: while referencing ‘delim’ 104 | char delim[1]; | ^~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:72, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from clustalW/general/Stats.cpp:12: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:67, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from clustalW/general/Stats.cpp:12: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘void clustalw::Stats::logAlignedSeqStats(clustalw::Alignment*)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:72, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from clustalW/general/Stats.cpp:12: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc: In member function ‘void clustalw::Stats::logInputSeqStats(clustalw::Alignment*)’: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] 33 | UserParameters::UserParameters(bool log) | ~~~~~^~~ clustalW/general/UserParameters.cpp: In member function ‘int clustalw::UserParameters::resIndex(std::string, char)’: clustalW/general/UserParameters.cpp:475:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 475 | register int i; | ^ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function ‘char* clustalw::Utility::rTrim(char*)’: clustalW/general/Utility.cpp:53:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | register int p; | ^ clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 251 | int n; | ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] 519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 221 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:62, from clustalW/general/Utility.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/algorithm:62, from clustalW/general/Utility.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In member function ‘double clustalw::Utility::median(std::vector)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’: clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 41 | catch(bad_alloc) | ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] 520 | clustalObj->getHelp('C'); | ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here 521 | case 'Q': | ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1190 | system(lin1.c_str()); | ~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 170 | int count; | ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | tmpnam (buffer); | ~~~~~~~^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] 340 | int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] 359 | string phylipName) | ~~~~~~~^~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function ‘void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)’: clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] 372 | if ((ix < 0) || (ix > _maxAA)) | ~~~^~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1657 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1717 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1103 | return (maxRes); | ^ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp clustalW/tree/NJTree.cpp: In member function ‘virtual void clustalw::NJTree::generateTree(clustalw::PhyloTree*, clustalw::DistMatrix*, clustalw::SeqInfo*, std::ofstream*)’: clustalW/tree/NJTree.cpp:164:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 164 | register int i; | ^ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:72, from clustalW/tree/NJTree.h:9, from clustalW/tree/NJTree.cpp:10: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:67, from clustalW/tree/NJTree.h:9, from clustalW/tree/NJTree.cpp:10: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘virtual void clustalw::NJTree::generateTree(clustalw::PhyloTree*, clustalw::DistMatrix*, clustalw::SeqInfo*, std::ofstream*)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | auto_ptr Tree::createSets(int firstSeq, int lastSeq) | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 280 | auto_ptr progAlignSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 31 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 195 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 200 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 208 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 214 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 439 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 445 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 485 | auto_ptr | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 490 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 503 | auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 506 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17 | auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 21 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27 | auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_conv.h:41, from /usr/arm-linux-gnueabi/include/c++/11/locale:43, from /usr/arm-linux-gnueabi/include/c++/11/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -dM -E -o moc_predefs.h /usr/lib/arm-linux-gnueabi/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:10: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_AlignOutputFileNames.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:10: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_BootstrapTreeDialog.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include FileDialog.h -o moc_FileDialog.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include mainwindow.h -o moc_mainwindow.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include SearchForString.h -o moc_SearchForString.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:10: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_TreeOutputFileNames.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I/usr/arm-linux-gnueabi/include/c++/11 -I/usr/arm-linux-gnueabi/include/c++/11/arm-linux-gnueabi -I/usr/arm-linux-gnueabi/include/c++/11/backward -I/usr/lib/gcc-cross/arm-linux-gnueabi/11/include -I/usr/arm-linux-gnueabi/include -I/usr/include/arm-linux-gnueabi -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp arm-linux-gnueabi-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabi/qt5 -I/usr/include/arm-linux-gnueabi/qt5/QtWidgets -I/usr/include/arm-linux-gnueabi/qt5/QtGui -I/usr/include/arm-linux-gnueabi/qt5/QtXml -I/usr/include/arm-linux-gnueabi/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabi/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:10: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/memory:76, from moc_WritePostscriptFile.cpp:9: /usr/arm-linux-gnueabi/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o /usr/lib/arm-linux-gnueabi/libQt5Widgets.so /usr/lib/arm-linux-gnueabi/libQt5Gui.so /usr/lib/arm-linux-gnueabi/libQt5Xml.so /usr/lib/arm-linux-gnueabi/libQt5Core.so -lGLESv2 -lpthread -latomic /usr/lib/gcc-cross/arm-linux-gnueabi/11/../../../../arm-linux-gnueabi/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/clustalx/ -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/clustalx/usr/bin/clustalx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-9_armel.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-9_armel.deb'. dpkg-genbuildinfo --build=any -O../clustalx_2.1+lgpl-9_armel.buildinfo dpkg-genchanges --build=any -O../clustalx_2.1+lgpl-9_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-02T19:38:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-9_armel.changes: ---------------------------------- Format: 1.8 Date: Fri, 04 Dec 2020 22:57:37 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 2.1+lgpl-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.1+lgpl-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) * No quotet entry in mailcap Checksums-Sha1: 7c5cd5c3ef4a069a55f705ed5d453f4531956e8a 9417396 clustalx-dbgsym_2.1+lgpl-9_armel.deb 04d118375d85bdd96fda003b3ba7097b005cf510 9548 clustalx_2.1+lgpl-9_armel.buildinfo eaf748d6acd6a8bfe2060622beac1e55819a83b9 378944 clustalx_2.1+lgpl-9_armel.deb Checksums-Sha256: 2cae21ccf72c689e89ee255dcf885745c0bd045c1091f10fb709ac32ee2940f0 9417396 clustalx-dbgsym_2.1+lgpl-9_armel.deb 1910c8a2cc1efa365b7f706c94bd6105c288ff1d873e2828b8454b13b4bc3e1d 9548 clustalx_2.1+lgpl-9_armel.buildinfo cf0d2b1ee9a6e5f7c777ab3bb50dad5894eb680ba8d9f4713b3117883f4061ca 378944 clustalx_2.1+lgpl-9_armel.deb Files: cc8fd704fa79588ebda178180ad5b759 9417396 debug optional clustalx-dbgsym_2.1+lgpl-9_armel.deb 388203764c449abbaf9c5f7c07d1145f 9548 science optional clustalx_2.1+lgpl-9_armel.buildinfo 39be9ab46b97939a4648099d3a97aa38 378944 science optional clustalx_2.1+lgpl-9_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalx Binary: clustalx clustalx-dbgsym Architecture: armel Version: 2.1+lgpl-9 Checksums-Md5: cc8fd704fa79588ebda178180ad5b759 9417396 clustalx-dbgsym_2.1+lgpl-9_armel.deb 39be9ab46b97939a4648099d3a97aa38 378944 clustalx_2.1+lgpl-9_armel.deb Checksums-Sha1: 7c5cd5c3ef4a069a55f705ed5d453f4531956e8a 9417396 clustalx-dbgsym_2.1+lgpl-9_armel.deb eaf748d6acd6a8bfe2060622beac1e55819a83b9 378944 clustalx_2.1+lgpl-9_armel.deb Checksums-Sha256: 2cae21ccf72c689e89ee255dcf885745c0bd045c1091f10fb709ac32ee2940f0 9417396 clustalx-dbgsym_2.1+lgpl-9_armel.deb cf0d2b1ee9a6e5f7c777ab3bb50dad5894eb680ba8d9f4713b3117883f4061ca 378944 clustalx_2.1+lgpl-9_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 02 Jan 2022 19:38:40 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-5+b1), binutils (= 2.37-10.1), binutils-common (= 2.37-10.1), binutils-x86-64-linux-gnu (= 2.37-10.1), bsdextrautils (= 2.37.2-5), bsdutils (= 1:2.37.2-5), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-13), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.8.0-1), fontconfig (= 2.13.1-4.2), fontconfig-config (= 2.13.1-4.2), fonts-dejavu-core (= 2.37-2), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-13), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-13), gcc-11-base (= 11.2.0-13), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), iso-codes (= 4.8.0-1), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-13), libatomic1 (= 11.2.0-13), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libavahi-client3 (= 0.8-5), libavahi-common-data (= 0.8-5), libavahi-common3 (= 0.8-5), libbinutils (= 2.37-10.1), libblkid1 (= 2.37.2-5), libbrotli1 (= 1.0.9-2+b3), libbsd0 (= 0.11.3-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-1), libc-dev-bin (= 2.33-1), libc6 (= 2.33-1), libc6-dev (= 2.33-1), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcap2-bin (= 1:2.44-1), libcc1-0 (= 11.2.0-13), libclang1-13 (= 1:13.0.0-9+b2), libcom-err2 (= 1.46.5-1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37-10.1), libctf0 (= 2.37-10.1), libcups2 (= 2.3.3op2-7), libdb5.3 (= 5.3.28+dfsg1-0.8), libdbus-1-3 (= 1.12.20-3), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdouble-conversion3 (= 3.1.5-7), libdpkg-perl (= 1.21.1), libdrm-amdgpu1 (= 2.4.109-2), libdrm-common (= 2.4.109-2), libdrm-intel1 (= 2.4.109-2), libdrm-nouveau2 (= 2.4.109-2), libdrm-radeon1 (= 2.4.109-2), libdrm2 (= 2.4.109-2), libdw1 (= 0.186-1), libedit2 (= 3.1-20210910-1), libegl-dev (= 1.3.4-2+b1), libegl-mesa0 (= 21.2.6-1), libegl1 (= 1.3.4-2+b1), libelf1 (= 0.186-1), libevdev2 (= 1.12.0+dfsg-1), libexpat1 (= 2.4.2-1), libffi8 (= 3.4.2-3), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.2), libfreetype6 (= 2.11.1+dfsg-1), libgbm1 (= 21.2.6-1), libgcc-11-dev (= 11.2.0-13), libgcc-s1 (= 11.2.0-13), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgl-dev (= 1.3.4-2+b1), libgl1 (= 1.3.4-2+b1), libgl1-mesa-dri (= 21.2.6-1), libglapi-mesa (= 21.2.6-1), libgles-dev (= 1.3.4-2+b1), libgles1 (= 1.3.4-2+b1), libgles2 (= 1.3.4-2+b1), libglib2.0-0 (= 2.70.2-1), libglvnd0 (= 1.3.4-2+b1), libglx-dev (= 1.3.4-2+b1), libglx-mesa0 (= 21.2.6-1), libglx0 (= 1.3.4-2+b1), libgmp10 (= 2:6.2.1+dfsg-3), libgnutls30 (= 3.7.2-4), libgomp1 (= 11.2.0-13), libgpg-error0 (= 1.43-1), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-7), libgstreamer-plugins-base1.0-0 (= 1.18.5-1), libgstreamer1.0-0 (= 1.18.5-1), libgudev-1.0-0 (= 237-2), libharfbuzz0b (= 2.7.4-1), libhogweed6 (= 3.7.3-1), libhyphen0 (= 2.8.8-7), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libinput-bin (= 1.19.2-1), libinput10 (= 1.19.2-1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-13), libjpeg62-turbo (= 1:2.1.2-1), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), libllvm12 (= 1:12.0.1-17+b1), libllvm13 (= 1:13.0.0-9+b2), liblsan0 (= 11.2.0-13), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmd4c0 (= 0.4.8-1), libmount1 (= 2.37.2-5), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libmtdev1 (= 1.1.6-1), libnettle8 (= 3.7.3-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), liborc-0.4-0 (= 1:0.4.32-1), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpciaccess0 (= 0.16-1), libpcre2-16-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.4-2), libpng16-16 (= 1.6.37-3), libpthread-stubs0-dev (= 0.4-1), libqt5concurrent5 (= 5.15.2+dfsg-14), libqt5core5a (= 5.15.2+dfsg-14), libqt5dbus5 (= 5.15.2+dfsg-14), libqt5designer5 (= 5.15.2-5+b1), libqt5designercomponents5 (= 5.15.2-5+b1), libqt5gui5 (= 5.15.2+dfsg-14), libqt5help5 (= 5.15.2-5+b1), libqt5network5 (= 5.15.2+dfsg-14), libqt5positioning5 (= 5.15.2+dfsg-3), libqt5printsupport5 (= 5.15.2+dfsg-14), libqt5qml5 (= 5.15.2+dfsg-9), libqt5qmlmodels5 (= 5.15.2+dfsg-9), libqt5quick5 (= 5.15.2+dfsg-9), libqt5quickwidgets5 (= 5.15.2+dfsg-9), libqt5sensors5 (= 5.15.2-2), libqt5sql5 (= 5.15.2+dfsg-14), libqt5sql5-sqlite (= 5.15.2+dfsg-14), libqt5test5 (= 5.15.2+dfsg-14), libqt5webchannel5 (= 5.15.2-2), libqt5webkit5 (= 5.212.0~alpha4-14), libqt5widgets5 (= 5.15.2+dfsg-14), libqt5xml5 (= 5.15.2+dfsg-14), libquadmath0 (= 11.2.0-13), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsensors-config (= 1:3.6.0-7), libsensors5 (= 1:3.6.0-7), libsigsegv2 (= 2.13-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.37.2-5), libsqlite3-0 (= 3.37.1-1), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-13), libstdc++6 (= 11.2.0-13), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.7-1), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-13), libubsan1 (= 11.2.0-13), libuchardet0 (= 0.0.7-1), libudev1 (= 249.7-1), libunistring2 (= 0.9.10-6), libunwind8 (= 1.3.2-2), libuuid1 (= 2.37.2-5), libvulkan-dev (= 1.2.189.0-2), libvulkan1 (= 1.2.189.0-2), libwacom-common (= 1.12-1), libwacom2 (= 1.12-1), libwayland-client0 (= 1.19.0-2+b1), libwayland-server0 (= 1.19.0-2+b1), libwebp6 (= 0.6.1-2.1), libwoff1 (= 1.0.2-1+b1), libx11-6 (= 2:1.7.2-2+b1), libx11-data (= 2:1.7.2-2), libx11-dev (= 2:1.7.2-2+b1), libx11-xcb1 (= 2:1.7.2-2+b1), libxau-dev (= 1:1.0.9-1), libxau6 (= 1:1.0.9-1), libxcb-dri2-0 (= 1.14-3), libxcb-dri3-0 (= 1.14-3), libxcb-glx0 (= 1.14-3), libxcb-icccm4 (= 0.4.1-1.1), libxcb-image0 (= 0.4.0-1+b3), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present0 (= 1.14-3), libxcb-randr0 (= 1.14-3), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.14-3), libxcb-shape0 (= 1.14-3), libxcb-shm0 (= 1.14-3), libxcb-sync1 (= 1.14-3), libxcb-util1 (= 0.4.0-1+b1), libxcb-xfixes0 (= 1.14-3), libxcb-xinerama0 (= 1.14-3), libxcb-xinput0 (= 1.14-3), libxcb-xkb1 (= 1.14-3), libxcb1 (= 1.14-3), libxcb1-dev (= 1.14-3), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.4-1), libxext6 (= 2:1.3.4-1), libxfixes3 (= 1:5.0.3-2), libxkbcommon-x11-0 (= 1.3.1-1), libxkbcommon0 (= 1.3.1-1), libxml2 (= 2.9.12+dfsg-5+b1), libxrender1 (= 1:0.9.10-1), libxshmfence1 (= 1.3-1), libxslt1.1 (= 1.1.34-4), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.12-1+b1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.5-2), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), qdoc-qt5 (= 5.15.2-5+b1), qhelpgenerator-qt5 (= 5.15.2-5+b1), qt5-assistant (= 5.15.2-5+b1), qt5-qmake (= 5.15.2+dfsg-14), qt5-qmake-bin (= 5.15.2+dfsg-14), qtattributionsscanner-qt5 (= 5.15.2-5+b1), qtbase5-dev (= 5.15.2+dfsg-14), qtbase5-dev-tools (= 5.15.2+dfsg-14), qtchooser (= 66-2), qttools5-dev-tools (= 5.15.2-5+b1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), shared-mime-info (= 2.0-1), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), ucf (= 3.0043), util-linux (= 2.37.2-5), x11-common (= 1:7.7+23), x11proto-dev (= 2021.5-1), xkb-data (= 2.33-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607119057" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-9_armel.deb ------------------------------------ new Debian package, version 2.0. size 9417396 bytes: control archive=540 bytes. 381 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-9 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 9400 Depends: clustalx (= 2.1+lgpl-9) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: b0dd579491b9a2c4b641f345626f139b57d44b00 drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/b0/ -rw-r--r-- root/root 9614764 2020-12-04 21:57 ./usr/lib/debug/.build-id/b0/dd579491b9a2c4b641f345626f139b57d44b00.debug drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-9_armel.deb ----------------------------- new Debian package, version 2.0. size 378944 bytes: control archive=1456 bytes. 1547 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-9 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1205 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 11) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/bin/ -rwxr-xr-x root/root 1122428 2020-12-04 21:57 ./usr/bin/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/packages/ -rw-r--r-- root/root 112 2020-12-04 21:57 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/applications/ -rw-r--r-- root/root 876 2020-12-04 21:57 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2020-12-04 21:57 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 4670 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1860 2020-12-04 21:57 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2020-12-04 21:57 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2020-12-04 21:57 ./usr/share/mime/packages/clustalx.xml lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [548 B] Get:5 copy:/<>/apt_archive ./ Packages [637 B] Fetched 2148 B in 0s (79.9 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 6749 kB of archives. After this operation, 20.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-3 [548 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-3 [927 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.25-1 [19.5 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.27-1 [17.1 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.27-1 [129 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-1+b5 [104 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-1 [10.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-2 [7448 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-2 [8992 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.120-1 [54.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.21-1 [50.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.26-1 [28.7 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-1 [197 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.10-1 [91.0 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-5 [88.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6749 kB in 0s (24.3 MB/s) Selecting previously unselected package diffstat. (Reading database ... 28501 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-3_amd64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.27-3_amd64.deb ... Unpacking gpg (2.2.27-3) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.40_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. 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Setting up lzip (1.22-5) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libsyntax-keyword-try-perl (0.26-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 129088 Build-Time: 333 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 69 Job: clustalx_2.1+lgpl-9 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 415 Source-Version: 2.1+lgpl-9 Space: 129088 Status: successful Version: 2.1+lgpl-9 -------------------------------------------------------------------------------- Finished at 2022-01-02T19:38:41Z Build needed 00:06:55, 129088k disk space