sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | clustalx 2.1+lgpl-9 (mips64el) Sun, 06 Dec 2020 04:43:17 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-9 Source Version: 2.1+lgpl-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-4d3c6291-bca2-40ae-be0e-7fb490381053' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-Zp9E9w/resolver-JPjclP' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [150 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [37.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [37.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-05-1412.41.pdiff [17.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-05-2008.41.pdiff [18.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-06-0201.27.pdiff [21.6 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-05-1412.41.pdiff [23.4 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-05-2008.41.pdiff [17.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-06-0201.27.pdiff [27.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-06-0201.27.pdiff [21.6 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-06-0201.27.pdiff [27.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8225 kB] Fetched 8575 kB in 2s (5419 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (dsc) [2084 B] Get:2 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (tar) [342 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (diff) [15.2 kB] Fetched 359 kB in 0s (2301 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-Zp9E9w/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-Zp9E9w' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [422 B] Get:5 copy:/<>/apt_archive ./ Packages [513 B] Fetched 1892 B in 0s (74.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64 gcc-10-mips64el-linux-gnuabi64-base gcc-9-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libavahi-client3 libavahi-client3:mips64el libavahi-common-data libavahi-common-data:mips64el libavahi-common3 libavahi-common3:mips64el libblkid1:mips64el libbrotli1 libbrotli1:mips64el libbsd0 libbsd0:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcap2 libcap2-bin libclang1-11 libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcups2 libcups2:mips64el libdbus-1-3 libdbus-1-3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:mips64el libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:mips64el libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:mips64el libdrm-radeon1 libdrm-radeon1:mips64el libdrm2 libdrm2:mips64el libdw1 libedit2 libedit2:mips64el libegl-dev:mips64el libegl-mesa0 libegl-mesa0:mips64el libegl1 libegl1:mips64el libelf1 libelf1:mips64el libevdev2 libevdev2:mips64el libexpat1 libexpat1:mips64el libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:mips64el libfreetype6 libfreetype6:mips64el libgbm1 libgbm1:mips64el libgcc-10-dev-mips64el-cross libgcc-9-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgcrypt20:mips64el libgl-dev:mips64el libgl1 libgl1:mips64el libgl1-mesa-dri libgl1-mesa-dri:mips64el libglapi-mesa libglapi-mesa:mips64el libglib2.0-0 libglib2.0-0:mips64el libglu1-mesa:mips64el libglu1-mesa-dev:mips64el libglvnd0 libglvnd0:mips64el libglx-dev:mips64el libglx-mesa0 libglx-mesa0:mips64el libglx0 libglx0:mips64el libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgraphite2-3 libgraphite2-3:mips64el libgssapi-krb5-2 libgssapi-krb5-2:mips64el libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:mips64el libharfbuzz0b libharfbuzz0b:mips64el libhogweed6:mips64el libhyphen0 libice6 libice6:mips64el libicu67 libicu67:mips64el libidn2-0:mips64el libinput-bin libinput10 libinput10:mips64el libio-string-perl libisl22 libjpeg62-turbo libjpeg62-turbo:mips64el libk5crypto3 libk5crypto3:mips64el libkeyutils1 libkeyutils1:mips64el libkrb5-3 libkrb5-3:mips64el libkrb5support0 libkrb5support0:mips64el libllvm11 libllvm11:mips64el liblocale-gettext-perl liblz4-1:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libmd4c0 libmd4c0:mips64el libmount1:mips64el libmtdev1 libmtdev1:mips64el libnettle8:mips64el libnsl-dev libnsl-dev:mips64el libnsl2 libnsl2:mips64el liborc-0.4-0 libp11-kit0:mips64el libpciaccess0 libpcre2-16-0 libpcre2-16-0:mips64el libpcre2-8-0:mips64el libpcre3:mips64el libperl5.32 libpipeline1 libpng16-16 libpng16-16:mips64el libpthread-stubs0-dev:mips64el libqt5concurrent5:mips64el libqt5core5a libqt5core5a:mips64el libqt5dbus5 libqt5dbus5:mips64el libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:mips64el libqt5help5 libqt5network5 libqt5network5:mips64el libqt5positioning5 libqt5printsupport5 libqt5printsupport5:mips64el libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:mips64el libqt5sql5-sqlite libqt5test5:mips64el libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:mips64el libqt5xml5 libqt5xml5:mips64el libselinux1:mips64el libsensors-config libsensors5 libsensors5:mips64el libsigsegv2 libsm6 libsm6:mips64el libsqlite3-0 libssl1.1 libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross libstdc++-9-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libsystemd0:mips64el libtasn1-6:mips64el libtinfo6:mips64el libtirpc-common libtirpc-dev libtirpc-dev:mips64el libtirpc3 libtirpc3:mips64el libtool libuchardet0 libudev1:mips64el libunistring2:mips64el libunwind8 libuuid1:mips64el libvulkan-dev:mips64el libvulkan1 libvulkan1:mips64el libwacom-common libwacom2 libwacom2:mips64el libwayland-client0 libwayland-client0:mips64el libwayland-server0 libwayland-server0:mips64el libwebp6 libwoff1 libx11-6 libx11-6:mips64el libx11-data libx11-dev:mips64el libx11-xcb1 libx11-xcb1:mips64el libxau-dev:mips64el libxau6 libxau6:mips64el libxcb-dri2-0 libxcb-dri2-0:mips64el libxcb-dri3-0 libxcb-dri3-0:mips64el libxcb-glx0 libxcb-glx0:mips64el libxcb-icccm4 libxcb-icccm4:mips64el libxcb-image0 libxcb-image0:mips64el libxcb-keysyms1 libxcb-keysyms1:mips64el libxcb-present0 libxcb-present0:mips64el libxcb-randr0 libxcb-randr0:mips64el libxcb-render-util0 libxcb-render-util0:mips64el libxcb-render0 libxcb-render0:mips64el libxcb-shape0 libxcb-shape0:mips64el libxcb-shm0 libxcb-shm0:mips64el libxcb-sync1 libxcb-sync1:mips64el libxcb-util1 libxcb-util1:mips64el libxcb-xfixes0 libxcb-xfixes0:mips64el libxcb-xinerama0 libxcb-xinerama0:mips64el libxcb-xinput0 libxcb-xinput0:mips64el libxcb-xkb1 libxcb-xkb1:mips64el libxcb1 libxcb1:mips64el libxcb1-dev:mips64el libxdamage1 libxdamage1:mips64el libxdmcp-dev:mips64el libxdmcp6 libxdmcp6:mips64el libxext-dev:mips64el libxext6 libxext6:mips64el libxfixes3 libxfixes3:mips64el libxkbcommon-x11-0 libxkbcommon-x11-0:mips64el libxkbcommon0 libxkbcommon0:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxshmfence1 libxshmfence1:mips64el libxslt1.1 libxxf86vm1 libxxf86vm1:mips64el libyaml-perl libz3-4 libz3-4:mips64el libzstd1:mips64el linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:mips64el qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:mips64el qtbase5-dev-tools qtchooser qttools5-dev-tools sensible-utils shared-mime-info ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-mips64el-linux-gnuabi64 gcc-10-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el cups-common cups-common:mips64el gnupg git bzr rng-tools:mips64el gnutls-bin:mips64el krb5-doc krb5-user krb5-doc:mips64el krb5-user:mips64el libvisual-0.4-plugins gstreamer1.0-tools pciutils libthai0 libthai0:mips64el qt5-image-formats-plugins qtwayland5 qt5-image-formats-plugins:mips64el qtwayland5:mips64el qt5-qmltooling-plugins lm-sensors lm-sensors:mips64el libstdc++-10-doc libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:mips64el libxcb-doc:mips64el libxext-doc:mips64el libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl qt5-doc default-libmysqlclient-dev:mips64el firebird-dev:mips64el libpq-dev:mips64el libsqlite3-dev:mips64el unixodbc-dev:mips64el Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libnss-nis:mips64el libnss-nisplus:mips64el libpam-cap dbus dbus:mips64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data xdg-user-dirs libglib2.0-data:mips64el xdg-user-dirs:mips64el libgpg-error-l10n:mips64el gstreamer1.0-plugins-base krb5-locales krb5-locales:mips64el qttranslations5-l10n qttranslations5-l10n:mips64el libqt5svg5 qt5-gtk-platformtheme libqt5svg5:mips64el qt5-gtk-platformtheme:mips64el geoclue-2.0 libqt5sql5-sqlite:mips64el | libqt5sql5-mysql:mips64el | libqt5sql5-odbc:mips64el | libqt5sql5-psql:mips64el | libqt5sql5-tds:mips64el | libqt5sql5-ibase:mips64el libltdl-dev uuid-runtime:mips64el mesa-vulkan-drivers | vulkan-icd mesa-vulkan-drivers:mips64el | vulkan-icd:mips64el libwacom-bin libwacom-bin:mips64el libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl libqt5opengl5-dev:mips64el The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64 gcc-10-mips64el-linux-gnuabi64-base gcc-9-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libavahi-client3 libavahi-client3:mips64el libavahi-common-data libavahi-common-data:mips64el libavahi-common3 libavahi-common3:mips64el libblkid1:mips64el libbrotli1 libbrotli1:mips64el libbsd0 libbsd0:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcap2 libcap2-bin libclang1-11 libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcups2 libcups2:mips64el libdbus-1-3 libdbus-1-3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:mips64el libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:mips64el libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:mips64el libdrm-radeon1 libdrm-radeon1:mips64el libdrm2 libdrm2:mips64el libdw1 libedit2 libedit2:mips64el libegl-dev:mips64el libegl-mesa0 libegl-mesa0:mips64el libegl1 libegl1:mips64el libelf1 libelf1:mips64el libevdev2 libevdev2:mips64el libexpat1 libexpat1:mips64el libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:mips64el libfreetype6 libfreetype6:mips64el libgbm1 libgbm1:mips64el libgcc-10-dev-mips64el-cross libgcc-9-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgcrypt20:mips64el libgl-dev:mips64el libgl1 libgl1:mips64el libgl1-mesa-dri libgl1-mesa-dri:mips64el libglapi-mesa libglapi-mesa:mips64el libglib2.0-0 libglib2.0-0:mips64el libglu1-mesa:mips64el libglu1-mesa-dev:mips64el libglvnd0 libglvnd0:mips64el libglx-dev:mips64el libglx-mesa0 libglx-mesa0:mips64el libglx0 libglx0:mips64el libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgraphite2-3 libgraphite2-3:mips64el libgssapi-krb5-2 libgssapi-krb5-2:mips64el libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:mips64el libharfbuzz0b libharfbuzz0b:mips64el libhogweed6:mips64el libhyphen0 libice6 libice6:mips64el libicu67 libicu67:mips64el libidn2-0:mips64el libinput-bin libinput10 libinput10:mips64el libio-string-perl libisl22 libjpeg62-turbo libjpeg62-turbo:mips64el libk5crypto3 libk5crypto3:mips64el libkeyutils1 libkeyutils1:mips64el libkrb5-3 libkrb5-3:mips64el libkrb5support0 libkrb5support0:mips64el libllvm11 libllvm11:mips64el liblocale-gettext-perl liblz4-1:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libmd4c0 libmd4c0:mips64el libmount1:mips64el libmtdev1 libmtdev1:mips64el libnettle8:mips64el libnsl-dev libnsl-dev:mips64el libnsl2 libnsl2:mips64el liborc-0.4-0 libp11-kit0:mips64el libpciaccess0 libpcre2-16-0 libpcre2-16-0:mips64el libpcre2-8-0:mips64el libpcre3:mips64el libperl5.32 libpipeline1 libpng16-16 libpng16-16:mips64el libpthread-stubs0-dev:mips64el libqt5concurrent5:mips64el libqt5core5a libqt5core5a:mips64el libqt5dbus5 libqt5dbus5:mips64el libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:mips64el libqt5help5 libqt5network5 libqt5network5:mips64el libqt5positioning5 libqt5printsupport5 libqt5printsupport5:mips64el libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:mips64el libqt5sql5-sqlite libqt5test5:mips64el libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:mips64el libqt5xml5 libqt5xml5:mips64el libselinux1:mips64el libsensors-config libsensors5 libsensors5:mips64el libsigsegv2 libsm6 libsm6:mips64el libsqlite3-0 libssl1.1 libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross libstdc++-9-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libsystemd0:mips64el libtasn1-6:mips64el libtinfo6:mips64el libtirpc-common libtirpc-dev libtirpc-dev:mips64el libtirpc3 libtirpc3:mips64el libtool libuchardet0 libudev1:mips64el libunistring2:mips64el libunwind8 libuuid1:mips64el libvulkan-dev:mips64el libvulkan1 libvulkan1:mips64el libwacom-common libwacom2 libwacom2:mips64el libwayland-client0 libwayland-client0:mips64el libwayland-server0 libwayland-server0:mips64el libwebp6 libwoff1 libx11-6 libx11-6:mips64el libx11-data libx11-dev:mips64el libx11-xcb1 libx11-xcb1:mips64el libxau-dev:mips64el libxau6 libxau6:mips64el libxcb-dri2-0 libxcb-dri2-0:mips64el libxcb-dri3-0 libxcb-dri3-0:mips64el libxcb-glx0 libxcb-glx0:mips64el libxcb-icccm4 libxcb-icccm4:mips64el libxcb-image0 libxcb-image0:mips64el libxcb-keysyms1 libxcb-keysyms1:mips64el libxcb-present0 libxcb-present0:mips64el libxcb-randr0 libxcb-randr0:mips64el libxcb-render-util0 libxcb-render-util0:mips64el libxcb-render0 libxcb-render0:mips64el libxcb-shape0 libxcb-shape0:mips64el libxcb-shm0 libxcb-shm0:mips64el libxcb-sync1 libxcb-sync1:mips64el libxcb-util1 libxcb-util1:mips64el libxcb-xfixes0 libxcb-xfixes0:mips64el libxcb-xinerama0 libxcb-xinerama0:mips64el libxcb-xinput0 libxcb-xinput0:mips64el libxcb-xkb1 libxcb-xkb1:mips64el libxcb1 libxcb1:mips64el libxcb1-dev:mips64el libxdamage1 libxdamage1:mips64el libxdmcp-dev:mips64el libxdmcp6 libxdmcp6:mips64el libxext-dev:mips64el libxext6 libxext6:mips64el libxfixes3 libxfixes3:mips64el libxkbcommon-x11-0 libxkbcommon-x11-0:mips64el libxkbcommon0 libxkbcommon0:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxshmfence1 libxshmfence1:mips64el libxslt1.1 libxxf86vm1 libxxf86vm1:mips64el libyaml-perl libz3-4 libz3-4:mips64el libzstd1:mips64el linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.32 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:mips64el qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:mips64el qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-main-dummy:mips64el sensible-utils shared-mime-info ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:mips64el 0 upgraded, 375 newly installed, 0 to remove and 0 not upgraded. Need to get 288 MB of archives. After this operation, 1214 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.3-2 [1366 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libdw1 amd64 0.182-1 [234 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libunwind8 amd64 1.3.2-2 [54.5 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2-bin amd64 1:2.44-1 [32.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.18.1-1 [2224 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 liborc-0.4-0 amd64 1:0.4.32-1 [192 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 iso-codes all 4.5.0-1 [2793 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.18.1-1 [2145 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3 [693 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdouble-conversion3 amd64 3.1.5-6.1 [41.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-16-0 amd64 10.35-2 [229 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5core5a amd64 5.15.1+dfsg-4 [1813 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b1 [282 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.2+dfsg-4 [410 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.103-2 [14.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm2 amd64 2.4.103-2 [41.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-server0 amd64 1.18.0-2~exp1.1 [34.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgbm1 amd64 20.2.3-1 [74.8 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libglapi-mesa amd64 20.2.3-1 [71.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-client0 amd64 1.18.0-2~exp1.1 [26.9 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.12-1 [203 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri2-0 amd64 1.14-2 [103 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri3-0 amd64 1.14-2 [102 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-present0 amd64 1.14-2 [101 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-sync1 amd64 1.14-2 [105 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xfixes0 amd64 1.14-2 [105 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libegl-mesa0 amd64 20.2.3-1 [142 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libegl1 amd64 1.3.2-1 [34.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.12-1 [311 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.12-1 [770 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-glx0 amd64 1.14-2 [118 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.103-2 [28.4 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-intel1 amd64 2.4.103-2 [71.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.103-2 [26.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.103-2 [30.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm11 amd64 1:11.0.0-5+b1 [17.9 MB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.6.0-2 [32.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-2 [53.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libvulkan1 amd64 1.2.154.1-1 [102 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1-mesa-dri amd64 20.2.3-1 [9609 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libglx-mesa0 amd64 20.2.3-1 [186 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.7-1 [1467 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+21 [252 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libevdev2 amd64 1.10.0+dfsg-1 [34.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libgudev-1.0-0 amd64 234-1 [14.7 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom-common all 1.6-1 [48.0 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom2 amd64 1.6-1 [21.6 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libinput-bin amd64 1.16.4-1 [23.0 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libinput10 amd64 1.16.4-1 [117 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libmd4c0 amd64 0.4.6-1 [43.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libdbus-1-3 amd64 1.12.20-1 [217 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5dbus5 amd64 5.15.1+dfsg-4 [226 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1h-1 [1550 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.18.3-4 [65.1 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.18.3-4 [113 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.18.3-4 [362 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.18.3-4 [165 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5network5 amd64 5.15.1+dfsg-4 [654 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-1+b3 [24.3 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-randr0 amd64 1.14-2 [112 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shape0 amd64 1.14-2 [102 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinerama0 amd64 1.14-2 [101 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinput0 amd64 1.14-2 [125 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xkb1 amd64 1.14-2 [126 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 xkb-data all 2.29-2 [655 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon0 amd64 1.0.3-2 [101 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.0.3-2 [16.6 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5gui5 amd64 5.15.1+dfsg-4 [3200 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5positioning5 amd64 5.15.1+dfsg-2 [205 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common-data amd64 0.8-3 [126 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common3 amd64 0.8-3 [58.3 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-client3 amd64 0.8-3 [61.7 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 libcups2 amd64 2.3.3op1-3 [349 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5widgets5 amd64 5.15.1+dfsg-4 [2343 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5printsupport5 amd64 5.15.1+dfsg-4 [219 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qml5 amd64 5.15.1+dfsg-3 [1319 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qmlmodels5 amd64 5.15.1+dfsg-3 [193 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quick5 amd64 5.15.1+dfsg-3 [1557 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sensors5 amd64 5.15.1-2 [112 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webchannel5 amd64 5.15.1-2 [58.2 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.0-1 [796 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 libwoff1 amd64 1.0.2-1+b1 [42.4 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libxslt1.1 amd64 1.1.34-4 [239 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha4-7 [11.7 MB] Get:136 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10.2.0-23 [201 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10.2.0-23 [69.5 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.17-1 [93.1 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.31-5 [2546 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.38-2 [74.2 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.7-2 [502 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main mips64el liblz4-1 mips64el 1.9.2-2 [60.9 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.4-1+b1 [151 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main mips64el libzstd1 mips64el 1.4.5+dfsg-4 [298 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main mips64el libsystemd0 mips64el 247.1-3 [323 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.3.0-19 [198 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-1 [814 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.35.1-2cross2 [2354 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-common all 1.2.6-3 [13.3 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc3 amd64 1.2.6-3 [83.4 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-5 [2342 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-23 [1741 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-23 [44.7 MB] Get:167 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:168 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:171 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64-base amd64 10.2.0-17cross1 [200 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main amd64 libisl22 amd64 0.22.1-1 [612 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mips64el-linux-gnuabi64 amd64 10.2.0-17cross1 [6983 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [16.9 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.0-17cross1 [196 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.31-2cross1 [1336 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 10.2.0-17cross1 [69.7 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 10.2.0-17cross1 [88.3 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 10.2.0-17cross1 [7368 B] Get:181 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mips64el-cross all 10.2.0-17cross1 [270 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64 amd64 10.2.0-17cross1 [13.6 MB] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1480 B] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 10.2.0-17cross1 [393 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.7.10-1cross1 [1237 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.31-2cross1 [2256 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mips64el-cross all 10.2.0-17cross1 [1764 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mips64el-linux-gnuabi64 amd64 10.2.0-17cross1 [7648 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1192 B] Get:190 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:204 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10.2.0-23 [7540 B] Get:218 http://debian.oregonstate.edu/debian unstable/main mips64el libavahi-common-data mips64el 0.8-3 [126 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main mips64el libavahi-common3 mips64el 0.8-3 [55.5 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main mips64el libdbus-1-3 mips64el 1.12.20-1 [193 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main mips64el libavahi-client3 mips64el 0.8-3 [57.2 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main mips64el libblkid1 mips64el 2.36.1-2 [180 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main mips64el libbrotli1 mips64el 1.0.9-2+b1 [277 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main mips64el libbsd0 mips64el 0.10.0-1 [106 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.9.11-1 [1224 kB] Get:226 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.17-1 [115 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.6-1 [71.5 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.18.3-4 [63.2 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.18.3-4 [120 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1h-1 [1147 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.18.3-4 [328 kB] Get:233 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.18.3-4 [150 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc3 mips64el 1.2.6-3 [74.0 kB] Get:235 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc-dev mips64el 1.2.6-3 [200 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.31-5 [2202 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-11 amd64 1:11.0.0-5+b1 [5510 kB] Get:240 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.2.1+dfsg-1 [553 kB] Get:241 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle8 mips64el 3.6-2 [249 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed6 mips64el 3.6-2 [306 kB] Get:243 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-4 [371 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.3.0-4 [85.4 kB] Get:245 http://debian.oregonstate.edu/debian unstable/main mips64el libffi7 mips64el 3.3-5 [22.6 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.21-2 [273 kB] Get:247 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.16.0-2 [52.6 kB] Get:248 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.6.15-4 [1033 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main mips64el libcups2 mips64el 2.3.3op1-3 [318 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10.2.0-23 [433 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main mips64el libdouble-conversion3 mips64el 3.1.5-6.1 [39.2 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main mips64el libdrm2 mips64el 2.4.103-2 [39.1 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main mips64el libdrm-amdgpu1 mips64el 2.4.103-2 [27.3 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main mips64el libdrm-nouveau2 mips64el 2.4.103-2 [25.9 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main mips64el libdrm-radeon1 mips64el 2.4.103-2 [29.7 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main mips64el libtinfo6 mips64el 6.2+20201114-1 [334 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main mips64el libedit2 mips64el 3.1-20191231-1 [88.2 kB] Get:259 http://debian.oregonstate.edu/debian unstable/main mips64el libglvnd0 mips64el 1.3.2-1 [51.6 kB] Get:260 http://debian.oregonstate.edu/debian unstable/main mips64el libexpat1 mips64el 2.2.10-1 [94.0 kB] Get:261 http://debian.oregonstate.edu/debian unstable/main mips64el libwayland-server0 mips64el 1.18.0-2~exp1.1 [31.4 kB] Get:262 http://debian.oregonstate.edu/debian unstable/main mips64el libgbm1 mips64el 20.2.3-1 [72.2 kB] Get:263 http://debian.oregonstate.edu/debian unstable/main mips64el libglapi-mesa mips64el 20.2.3-1 [76.4 kB] Get:264 http://debian.oregonstate.edu/debian unstable/main mips64el libwayland-client0 mips64el 1.18.0-2~exp1.1 [25.0 kB] Get:265 http://debian.oregonstate.edu/debian unstable/main mips64el libx11-xcb1 mips64el 2:1.6.12-1 [203 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main mips64el libxau6 mips64el 1:1.0.8-1+b2 [19.8 kB] Get:267 http://debian.oregonstate.edu/debian unstable/main mips64el libxdmcp6 mips64el 1:1.1.2-3 [26.1 kB] Get:268 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb1 mips64el 1.14-2 [131 kB] Get:269 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-dri2-0 mips64el 1.14-2 [102 kB] Get:270 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-dri3-0 mips64el 1.14-2 [102 kB] Get:271 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-present0 mips64el 1.14-2 [101 kB] Get:272 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-sync1 mips64el 1.14-2 [104 kB] Get:273 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-xfixes0 mips64el 1.14-2 [104 kB] Get:274 http://debian.oregonstate.edu/debian unstable/main mips64el libxshmfence1 mips64el 1.3-1 [8888 B] Get:275 http://debian.oregonstate.edu/debian unstable/main mips64el libegl-mesa0 mips64el 20.2.3-1 [130 kB] Get:276 http://debian.oregonstate.edu/debian unstable/main mips64el libegl1 mips64el 1.3.2-1 [32.9 kB] Get:277 http://debian.oregonstate.edu/debian unstable/main mips64el libx11-6 mips64el 2:1.6.12-1 [726 kB] Get:278 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-glx0 mips64el 1.14-2 [113 kB] Get:279 http://debian.oregonstate.edu/debian unstable/main mips64el libxdamage1 mips64el 1:1.1.5-2 [15.5 kB] Get:280 http://debian.oregonstate.edu/debian unstable/main mips64el libxext6 mips64el 2:1.3.3-1+b2 [49.6 kB] Get:281 http://debian.oregonstate.edu/debian unstable/main mips64el libxfixes3 mips64el 1:5.0.3-2 [21.5 kB] Get:282 http://debian.oregonstate.edu/debian unstable/main mips64el libxxf86vm1 mips64el 1:1.1.4-1+b2 [20.4 kB] Get:283 http://debian.oregonstate.edu/debian unstable/main mips64el libelf1 mips64el 0.182-1 [164 kB] Get:284 http://debian.oregonstate.edu/debian unstable/main mips64el libz3-4 mips64el 4.8.9-1 [5870 kB] Get:285 http://debian.oregonstate.edu/debian unstable/main mips64el libllvm11 mips64el 1:11.0.0-5+b1 [14.4 MB] Get:286 http://debian.oregonstate.edu/debian unstable/main mips64el libsensors5 mips64el 1:3.6.0-2 [51.8 kB] Get:287 http://debian.oregonstate.edu/debian unstable/main mips64el libgl1-mesa-dri mips64el 20.2.3-1 [5499 kB] Get:288 http://debian.oregonstate.edu/debian unstable/main mips64el libglx-mesa0 mips64el 20.2.3-1 [175 kB] Get:289 http://debian.oregonstate.edu/debian unstable/main mips64el libglx0 mips64el 1.3.2-1 [28.1 kB] Get:290 http://debian.oregonstate.edu/debian unstable/main mips64el libgl1 mips64el 1.3.2-1 [90.3 kB] Get:291 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:292 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get:293 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2020.1-1 [3404 B] Get:294 http://debian.oregonstate.edu/debian unstable/main mips64el libxau-dev mips64el 1:1.0.8-1+b2 [23.7 kB] Get:295 http://debian.oregonstate.edu/debian unstable/main mips64el libxdmcp-dev mips64el 1:1.1.2-3 [42.9 kB] Get:296 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:297 http://debian.oregonstate.edu/debian unstable/main mips64el libpthread-stubs0-dev mips64el 0.4-1 [5352 B] Get:298 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb1-dev mips64el 1.14-2 [179 kB] Get:299 http://debian.oregonstate.edu/debian unstable/main mips64el libx11-dev mips64el 2:1.6.12-1 [854 kB] Get:300 http://debian.oregonstate.edu/debian unstable/main mips64el libglx-dev mips64el 1.3.2-1 [16.3 kB] Get:301 http://debian.oregonstate.edu/debian unstable/main mips64el libgl-dev mips64el 1.3.2-1 [100 kB] Get:302 http://debian.oregonstate.edu/debian unstable/main mips64el libegl-dev mips64el 1.3.2-1 [19.6 kB] Get:303 http://debian.oregonstate.edu/debian unstable/main mips64el libevdev2 mips64el 1.10.0+dfsg-1 [29.1 kB] Get:304 http://debian.oregonstate.edu/debian unstable/main mips64el libpng16-16 mips64el 1.6.37-3 [287 kB] Get:305 http://debian.oregonstate.edu/debian unstable/main mips64el libfreetype6 mips64el 2.10.2+dfsg-4 [386 kB] Get:306 http://debian.oregonstate.edu/debian unstable/main mips64el libuuid1 mips64el 2.36.1-2 [82.9 kB] Get:307 http://debian.oregonstate.edu/debian unstable/main mips64el libfontconfig1 mips64el 2.13.1-4.2 [347 kB] Get:308 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10.2.0-23 [90.2 kB] Get:309 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.3.0-19 [248 kB] Get:310 http://debian.oregonstate.edu/debian unstable/main mips64el libpcre2-8-0 mips64el 10.35-2 [156 kB] Get:311 http://debian.oregonstate.edu/debian unstable/main mips64el libselinux1 mips64el 3.1-2+b1 [79.7 kB] Get:312 http://debian.oregonstate.edu/debian unstable/main mips64el libmount1 mips64el 2.36.1-2 [187 kB] Get:313 http://debian.oregonstate.edu/debian unstable/main mips64el libpcre3 mips64el 2:8.39-13 [333 kB] Get:314 http://debian.oregonstate.edu/debian unstable/main mips64el libglib2.0-0 mips64el 2.66.3-2 [1159 kB] Get:315 http://debian.oregonstate.edu/debian unstable/main mips64el libglu1-mesa mips64el 9.0.1-1 [171 kB] Get:316 http://debian.oregonstate.edu/debian unstable/main mips64el libglu1-mesa-dev mips64el 9.0.1-1 [231 kB] Get:317 http://debian.oregonstate.edu/debian unstable/main mips64el libgraphite2-3 mips64el 1.3.14-1 [77.5 kB] Get:318 http://debian.oregonstate.edu/debian unstable/main mips64el libudev1 mips64el 247.1-3 [157 kB] Get:319 http://debian.oregonstate.edu/debian unstable/main mips64el libgudev-1.0-0 mips64el 234-1 [12.3 kB] Get:320 http://debian.oregonstate.edu/debian unstable/main mips64el libharfbuzz0b mips64el 2.6.7-1 [1450 kB] Get:321 http://debian.oregonstate.edu/debian unstable/main mips64el libice6 mips64el 2:1.0.10-1 [53.0 kB] Get:322 http://debian.oregonstate.edu/debian unstable/main mips64el libicu67 mips64el 67.1-4 [8499 kB] Get:323 http://debian.oregonstate.edu/debian unstable/main mips64el libmtdev1 mips64el 1.1.6-1 [23.1 kB] Get:324 http://debian.oregonstate.edu/debian unstable/main mips64el libwacom2 mips64el 1.6-1 [19.5 kB] Get:325 http://debian.oregonstate.edu/debian unstable/main mips64el libinput10 mips64el 1.16.4-1 [106 kB] Get:326 http://debian.oregonstate.edu/debian unstable/main mips64el libjpeg62-turbo mips64el 1:2.0.5-1.1 [138 kB] Get:327 http://debian.oregonstate.edu/debian unstable/main mips64el libmd4c0 mips64el 0.4.6-1 [43.1 kB] Get:328 http://debian.oregonstate.edu/debian unstable/main mips64el libpcre2-16-0 mips64el 10.35-2 [145 kB] Get:329 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5core5a mips64el 5.15.1+dfsg-4 [1697 kB] Get:330 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5concurrent5 mips64el 5.15.1+dfsg-4 [68.8 kB] Get:331 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5dbus5 mips64el 5.15.1+dfsg-4 [203 kB] Get:332 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5xml5 amd64 5.15.1+dfsg-4 [144 kB] Get:333 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designer5 amd64 5.15.1-2+b1 [2705 kB] Get:334 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designercomponents5 amd64 5.15.1-2+b1 [715 kB] Get:335 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5network5 mips64el 5.15.1+dfsg-4 [568 kB] Get:336 http://debian.oregonstate.edu/debian unstable/main mips64el libsm6 mips64el 2:1.2.3-1 [33.6 kB] Get:337 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-icccm4 mips64el 0.4.1-1.1 [26.3 kB] Get:338 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-shm0 mips64el 1.14-2 [101 kB] Get:339 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-util1 mips64el 0.4.0-1+b1 [22.6 kB] Get:340 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-image0 mips64el 0.4.0-1+b3 [24.1 kB] Get:341 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-keysyms1 mips64el 0.4.0-1+b2 [16.2 kB] Get:342 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-randr0 mips64el 1.14-2 [110 kB] Get:343 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-render0 mips64el 1.14-2 [109 kB] Get:344 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-render-util0 mips64el 0.3.9-1+b1 [18.0 kB] Get:345 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-shape0 mips64el 1.14-2 [101 kB] Get:346 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-xinerama0 mips64el 1.14-2 [101 kB] Get:347 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-xinput0 mips64el 1.14-2 [120 kB] Get:348 http://debian.oregonstate.edu/debian unstable/main mips64el libxcb-xkb1 mips64el 1.14-2 [121 kB] Get:349 http://debian.oregonstate.edu/debian unstable/main mips64el libxkbcommon0 mips64el 1.0.3-2 [96.9 kB] Get:350 http://debian.oregonstate.edu/debian unstable/main mips64el libxkbcommon-x11-0 mips64el 1.0.3-2 [16.2 kB] Get:351 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5gui5 mips64el 5.15.1+dfsg-4 [2797 kB] Get:352 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5 amd64 5.15.1+dfsg-4 [141 kB] Get:353 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5help5 amd64 5.15.1-2+b1 [142 kB] Get:354 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5widgets5 mips64el 5.15.1+dfsg-4 [2097 kB] Get:355 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5printsupport5 mips64el 5.15.1+dfsg-4 [204 kB] Get:356 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.15.1+dfsg-3 [48.1 kB] Get:357 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5sql5 mips64el 5.15.1+dfsg-4 [132 kB] Get:358 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.15.1+dfsg-4 [81.2 kB] Get:359 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5test5 mips64el 5.15.1+dfsg-4 [159 kB] Get:360 http://debian.oregonstate.edu/debian unstable/main mips64el libqt5xml5 mips64el 5.15.1+dfsg-4 [138 kB] Get:361 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.3.0-19 [1739 kB] Get:362 http://debian.oregonstate.edu/debian unstable/main mips64el libvulkan1 mips64el 1.2.154.1-1 [83.9 kB] Get:363 http://debian.oregonstate.edu/debian unstable/main mips64el libvulkan-dev mips64el 1.2.154.1-1 [565 kB] Get:364 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2020.1-1 [3404 B] Get:365 http://debian.oregonstate.edu/debian unstable/main mips64el libxext-dev mips64el 2:1.3.3-1+b2 [110 kB] Get:366 http://debian.oregonstate.edu/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:367 http://debian.oregonstate.edu/debian unstable/main amd64 qdoc-qt5 amd64 5.15.1-2+b1 [561 kB] Get:368 http://debian.oregonstate.edu/debian unstable/main amd64 qhelpgenerator-qt5 amd64 5.15.1-2+b1 [58.4 kB] Get:369 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-assistant amd64 5.15.1-2+b1 [345 kB] Get:370 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.1+dfsg-4 [1038 kB] Get:371 http://debian.oregonstate.edu/debian unstable/main mips64el qt5-qmake mips64el 5.15.1+dfsg-4 [246 kB] Get:372 http://debian.oregonstate.edu/debian unstable/main amd64 qtattributionsscanner-qt5 amd64 5.15.1-2+b1 [34.9 kB] Get:373 http://debian.oregonstate.edu/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.1+dfsg-4 [752 kB] Get:374 http://debian.oregonstate.edu/debian unstable/main mips64el qtbase5-dev mips64el 5.15.1+dfsg-4 [1146 kB] Get:375 http://debian.oregonstate.edu/debian unstable/main amd64 qttools5-dev-tools amd64 5.15.1-2+b1 [967 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 288 MB in 3s (113 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10437 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-2_amd64.deb ... Unpacking bsdextrautils (2.36.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-5_all.deb ... Unpacking perl-modules-5.32 (5.32.0-5) ... 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Preparing to unpack .../052-libxcb-sync1_1.14-2_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.14-2) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../053-libxcb-xfixes0_1.14-2_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.14-2) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../054-libxshmfence1_1.3-1_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3-1) ... Selecting previously unselected package libegl-mesa0:amd64. Preparing to unpack .../055-libegl-mesa0_20.2.3-1_amd64.deb ... Unpacking libegl-mesa0:amd64 (20.2.3-1) ... Selecting previously unselected package libegl1:amd64. Preparing to unpack .../056-libegl1_1.3.2-1_amd64.deb ... Unpacking libegl1:amd64 (1.3.2-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../057-libx11-data_2%3a1.6.12-1_all.deb ... Unpacking libx11-data (2:1.6.12-1) ... Selecting previously unselected package libx11-6:amd64. 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Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../064-libdrm-amdgpu1_2.4.103-2_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.103-2) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../065-libpciaccess0_0.16-1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.16-1) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../066-libdrm-intel1_2.4.103-2_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.103-2) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../067-libdrm-nouveau2_2.4.103-2_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.103-2) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../068-libdrm-radeon1_2.4.103-2_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.103-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../069-libedit2_3.1-20191231-1_amd64.deb ... 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Setting up libx11-xcb1:amd64 (2:1.6.12-1) ... Setting up libx11-xcb1:mips64el (2:1.6.12-1) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libxau6:mips64el (1:1.0.8-1+b2) ... Setting up libdouble-conversion3:amd64 (3.1.5-6.1) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libkeyutils1:mips64el (1.6.1-2) ... Setting up bsdextrautils (2.36.1-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libhyphen0:amd64 (2.8.8-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.66.3-2) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.3.2-1) ... Setting up libglvnd0:mips64el (1.3.2-1) ... Setting up libssl1.1:amd64 (1.1.1h-1) ... Setting up libssl1.1:mips64el (1.1.1h-1) ... Setting up libtirpc-common (1.2.6-3) ... Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libbrotli1:amd64 (1.0.9-2+b1) ... Setting up libbrotli1:mips64el (1.0.9-2+b1) ... Setting up libsqlite3-0:amd64 (3.34.0-1) ... Setting up libffi7:mips64el (3.3-5) ... Setting up x11-common (1:7.7+21) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libunistring2:mips64el (0.9.10-4) ... Setting up linux-libc-dev:mips64el (5.9.11-1) ... Setting up libc6-mips64el-cross (2.31-2cross1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up gcc-10-mips64el-linux-gnuabi64-base:amd64 (10.2.0-17cross1) ... Setting up xkb-data (2.29-2) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libidn2-0:mips64el (2.3.0-4) ... Setting up libcom-err2:mips64el (1.45.6-1) ... Setting up file (1:5.39-3) ... Setting up libgomp1:mips64el (10.2.0-23) ... Setting up libunwind8:amd64 (1.3.2-2) ... Setting up binutils-mips64el-linux-gnuabi64 (2.35.1-2cross2) ... Setting up libpthread-stubs0-dev:mips64el (0.4-1) ... Setting up libpcre2-16-0:amd64 (10.35-2) ... Setting up libpcre2-16-0:mips64el (10.35-2) ... Setting up libsystemd0:mips64el (247.1-3) ... Setting up libcap2:amd64 (1:2.44-1) ... Setting up libkrb5support0:amd64 (1.18.3-4) ... Setting up libkrb5support0:mips64el (1.18.3-4) ... Setting up libcap2-bin (1:2.44-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libpcre3:mips64el (2:8.39-13) ... Setting up autotools-dev (20180224.1) ... Setting up libz3-4:amd64 (4.8.9-1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.5-1.1) ... Setting up libjpeg62-turbo:mips64el (1:2.0.5-1.1) ... Setting up gcc-10-cross-base-mipsen (10.2.0-17cross1) ... Setting up qt5-qmake-bin (5.15.1+dfsg-4) ... Setting up libnettle8:mips64el (3.6-2) ... Setting up libx11-data (2:1.6.12-1) ... Setting up libgmp10:mips64el (2:6.2.1+dfsg-1) ... Setting up libavahi-common-data:amd64 (0.8-3) ... Setting up libavahi-common-data:mips64el (0.8-3) ... Setting up libdbus-1-3:amd64 (1.12.20-1) ... Setting up libdbus-1-3:mips64el (1.12.20-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libp11-kit0:mips64el (0.23.21-2) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libpng16-16:mips64el (1.6.37-3) ... Setting up libatomic1:mips64el (10.2.0-23) ... Setting up libuuid1:mips64el (2.36.1-2) ... Setting up liborc-0.4-0:amd64 (1:0.4.32-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:amd64 (0.6.1-2+b1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libsensors5:amd64 (1:3.6.0-2) ... Setting up libsensors5:mips64el (1:3.6.0-2) ... Setting up libpcre2-8-0:mips64el (10.35-2) ... Setting up libk5crypto3:amd64 (1.18.3-4) ... Setting up libk5crypto3:mips64el (1.18.3-4) ... Setting up libperl5.32:amd64 (5.32.0-5) ... Setting up libglapi-mesa:amd64 (20.2.3-1) ... Setting up libglapi-mesa:mips64el (20.2.3-1) ... Setting up libmtdev1:amd64 (1.1.6-1) ... Setting up libmtdev1:mips64el (1.1.6-1) ... Setting up libvulkan1:amd64 (1.2.154.1-1) ... Setting up libvulkan1:mips64el (1.2.154.1-1) ... Setting up libudev1:mips64el (247.1-3) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libxshmfence1:mips64el (1.3-1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libcrypt-dev:mips64el (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libtasn1-6:mips64el (4.16.0-2) ... Setting up libmd4c0:amd64 (0.4.6-1) ... Setting up libmd4c0:mips64el (0.4.6-1) ... Setting up libisl22:amd64 (0.22.1-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up linux-libc-dev-mips64el-cross (5.7.10-1cross1) ... Setting up libkrb5-3:amd64 (1.18.3-4) ... Setting up libkrb5-3:mips64el (1.18.3-4) ... Setting up libgomp1-mips64el-cross (10.2.0-17cross1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libbsd0:mips64el (0.10.0-1) ... Setting up libgcc-s1-mips64el-cross (10.2.0-17cross1) ... Setting up libdrm-common (2.4.103-2) ... Setting up libelf1:amd64 (0.182-1) ... Setting up libelf1:mips64el (0.182-1) ... Setting up libevdev2:amd64 (1.10.0+dfsg-1) ... Setting up libevdev2:mips64el (1.10.0+dfsg-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3) ... Setting up libblkid1:mips64el (2.36.1-2) ... Setting up iso-codes (4.5.0-1) ... Setting up libstdc++6:mips64el (10.2.0-23) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libgudev-1.0-0:amd64 (234-1) ... Setting up qtchooser (66-2) ... Setting up libtinfo6:mips64el (6.2+20201114-1) ... Setting up gcc-9-base:mips64el (9.3.0-19) ... Setting up libwacom-common (1.6-1) ... Setting up libxkbcommon0:amd64 (1.0.3-2) ... Setting up libxkbcommon0:mips64el (1.0.3-2) ... Setting up libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Setting up libwayland-client0:mips64el (1.18.0-2~exp1.1) ... Setting up x11proto-dev (2020.1-1) ... Setting up libwayland-server0:mips64el (1.18.0-2~exp1.1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libice6:mips64el (2:1.0.10-1) ... Setting up libdw1:amd64 (0.182-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxdmcp6:mips64el (1:1.1.2-3) ... Setting up libdouble-conversion3:mips64el (3.1.5-6.1) ... Setting up libvulkan-dev:mips64el (1.2.154.1-1) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up libxcb1:mips64el (1.14-2) ... Setting up libatomic1-mips64el-cross (10.2.0-17cross1) ... Setting up libhogweed6:mips64el (3.6-2) ... Setting up libxcb-xfixes0:amd64 (1.14-2) ... Setting up libxcb-xfixes0:mips64el (1.14-2) ... Setting up libxau-dev:mips64el (1:1.0.8-1+b2) ... Setting up qt5-qmake:mips64el (5.15.1+dfsg-4) ... Setting up libxcb-xinput0:amd64 (1.14-2) ... Setting up libxcb-xinput0:mips64el (1.14-2) ... Setting up libwoff1:amd64 (1.0.2-1+b1) ... Setting up libicu67:mips64el (67.1-4) ... Setting up libxcb-render0:amd64 (1.14-2) ... Setting up libxcb-render0:mips64el (1.14-2) ... Setting up libxcb-glx0:amd64 (1.14-2) ... Setting up libxcb-glx0:mips64el (1.14-2) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libedit2:mips64el (3.1-20191231-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-keysyms1:mips64el (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.14-2) ... Setting up libxcb-shape0:mips64el (1.14-2) ... Setting up libavahi-common3:amd64 (0.8-3) ... Setting up libavahi-common3:mips64el (0.8-3) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-render-util0:mips64el (0.3.9-1+b1) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libxcb-shm0:mips64el (1.14-2) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libxcb-icccm4:mips64el (0.4.1-1.1) ... Setting up cpp-10-mips64el-linux-gnuabi64 (10.2.0-17cross1) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libxcb-util1:mips64el (0.4.0-1+b1) ... Setting up libxcb-xkb1:amd64 (1.14-2) ... Setting up libxcb-xkb1:mips64el (1.14-2) ... Setting up libxcb-image0:amd64 (0.4.0-1+b3) ... Setting up libxcb-image0:mips64el (0.4.0-1+b3) ... Setting up libxcb-present0:amd64 (1.14-2) ... Setting up libxcb-present0:mips64el (1.14-2) ... Setting up libgcc-9-dev:mips64el (9.3.0-19) ... Setting up libselinux1:mips64el (3.1-2+b1) ... Setting up libxdmcp-dev:mips64el (1:1.1.2-3) ... Setting up perl (5.32.0-5) ... Setting up libz3-4:mips64el (4.8.9-1) ... Setting up libxcb-xinerama0:amd64 (1.14-2) ... Setting up libxcb-xinerama0:mips64el (1.14-2) ... Setting up libgnutls30:mips64el (3.6.15-4) ... Setting up libllvm11:amd64 (1:11.0.0-5+b1) ... Setting up libllvm11:mips64el (1:11.0.0-5+b1) ... Setting up libfreetype6:amd64 (2.10.2+dfsg-4) ... Setting up libfreetype6:mips64el (2.10.2+dfsg-4) ... Setting up libc6-dev-mips64el-cross (2.31-2cross1) ... Setting up libxcb-sync1:amd64 (1.14-2) ... Setting up libxcb-sync1:mips64el (1.14-2) ... Setting up x11proto-core-dev (2020.1-1) ... Setting up libgcc-10-dev-mips64el-cross (10.2.0-17cross1) ... Setting up shared-mime-info (2.0-1) ... Setting up libxkbcommon-x11-0:amd64 (1.0.3-2) ... Setting up libxkbcommon-x11-0:mips64el (1.0.3-2) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-4) ... Setting up libgssapi-krb5-2:mips64el (1.18.3-4) ... Setting up libclang1-11 (1:11.0.0-5+b1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up libqt5core5a:amd64 (5.15.1+dfsg-4) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (10.2.0-17cross1) ... Setting up libxcb-dri2-0:amd64 (1.14-2) ... Setting up libxcb-dri2-0:mips64el (1.14-2) ... Setting up libstdc++-10-dev-mips64el-cross (10.2.0-17cross1) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up libdrm2:amd64 (2.4.103-2) ... Setting up libdrm2:mips64el (2.4.103-2) ... Setting up dwz (0.13-5) ... Setting up gcc-10-mips64el-linux-gnuabi64 (10.2.0-17cross1) ... Setting up groff-base (1.22.4-5) ... Setting up libqt5dbus5:amd64 (5.15.1+dfsg-4) ... Setting up libmount1:mips64el (2.36.1-2) ... Setting up libxcb-randr0:amd64 (1.14-2) ... Setting up libxcb-randr0:mips64el (1.14-2) ... Setting up libxslt1.1:amd64 (1.1.34-4) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.12-1) ... Setting up libx11-6:mips64el (2:1.6.12-1) ... Setting up libharfbuzz0b:amd64 (2.6.7-1) ... Setting up libqt5sensors5:amd64 (5.15.1-2) ... Setting up cpp-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up libwacom2:amd64 (1.6-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libsm6:mips64el (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-3) ... Setting up libavahi-client3:mips64el (0.8-3) ... Setting up libgstreamer1.0-0:amd64 (1.18.1-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libdrm-amdgpu1:amd64 (2.4.103-2) ... Setting up libdrm-amdgpu1:mips64el (2.4.103-2) ... Setting up automake (1:1.16.3-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:amd64 (1.2.6-3) ... Setting up libtirpc3:mips64el (1.2.6-3) ... Setting up libxcb-dri3-0:amd64 (1.14-2) ... Setting up libxcb-dri3-0:mips64el (1.14-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libdrm-nouveau2:amd64 (2.4.103-2) ... Setting up libdrm-nouveau2:mips64el (2.4.103-2) ... Setting up gettext (0.19.8.1-10) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up libxdamage1:mips64el (1:1.1.5-2) ... Setting up libxcb1-dev:mips64el (1.14-2) ... Setting up libgbm1:amd64 (20.2.3-1) ... Setting up libgbm1:mips64el (20.2.3-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:mips64el (2.66.3-2) ... /var/lib/dpkg/info/libglib2.0-0:mips64el.postinst: 62: /usr/lib/mips64el-linux-gnuabi64/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:mips64el.postinst: 65: /usr/lib/mips64el-linux-gnuabi64/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.103-2) ... Setting up libdrm-radeon1:mips64el (2.4.103-2) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up qdoc-qt5 (5.15.1-2+b1) ... Setting up g++-10-mips64el-linux-gnuabi64 (10.2.0-17cross1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libqt5positioning5:amd64 (5.15.1+dfsg-2) ... Setting up libdrm-intel1:amd64 (2.4.103-2) ... Setting up libgl1-mesa-dri:amd64 (20.2.3-1) ... Setting up libgl1-mesa-dri:mips64el (20.2.3-1) ... Setting up libx11-dev:mips64el (2:1.6.12-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxext6:mips64el (2:1.3.3-1+b2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libgstreamer-plugins-base1.0-0:amd64 (1.18.1-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libqt5network5:amd64 (5.15.1+dfsg-4) ... Setting up dpkg-dev (1.20.5) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxxf86vm1:mips64el (1:1.1.4-1+b2) ... Setting up libinput-bin (1.16.4-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt5sql5:amd64 (5.15.1+dfsg-4) ... Setting up qtbase5-dev-tools (5.15.1+dfsg-4) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libqt5xml5:amd64 (5.15.1+dfsg-4) ... Setting up libegl-mesa0:amd64 (20.2.3-1) ... Setting up libegl-mesa0:mips64el (20.2.3-1) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up libtirpc-dev:mips64el (1.2.6-3) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libxfixes3:mips64el (1:5.0.3-2) ... Setting up libqt5qml5:amd64 (5.15.1+dfsg-3) ... Setting up qtattributionsscanner-qt5 (5.15.1-2+b1) ... Setting up libqt5webchannel5:amd64 (5.15.1-2) ... Setting up libqt5core5a:mips64el (5.15.1+dfsg-4) ... Setting up gcc-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up libxext-dev:mips64el (2:1.3.3-1+b2) ... Setting up libcups2:amd64 (2.3.3op1-3) ... Setting up libcups2:mips64el (2.3.3op1-3) ... Setting up libqt5dbus5:mips64el (5.15.1+dfsg-4) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl2:mips64el (1.3.0-2) ... Setting up libegl1:amd64 (1.3.2-1) ... Setting up libegl1:mips64el (1.3.2-1) ... Setting up libharfbuzz0b:mips64el (2.6.7-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfontconfig1:mips64el (2.13.1-4.2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libqt5test5:mips64el (5.15.1+dfsg-4) ... Setting up libqt5concurrent5:mips64el (5.15.1+dfsg-4) ... Setting up libgudev-1.0-0:mips64el (234-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:10.2.0-1) ... Setting up libinput10:amd64 (1.16.4-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libqt5qmlmodels5:amd64 (5.15.1+dfsg-3) ... Setting up libglx-mesa0:amd64 (20.2.3-1) ... Setting up libglx-mesa0:mips64el (20.2.3-1) ... Setting up libqt5sql5-sqlite:amd64 (5.15.1+dfsg-4) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up libglx0:mips64el (1.3.2-1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libqt5network5:mips64el (5.15.1+dfsg-4) ... Setting up libqt5sql5:mips64el (5.15.1+dfsg-4) ... Setting up libqt5xml5:mips64el (5.15.1+dfsg-4) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up libgl1:mips64el (1.3.2-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libnsl-dev:mips64el (1.3.0-2) ... Setting up libc6-dev:amd64 (2.31-5) ... Setting up libc6-dev:mips64el (2.31-5) ... Setting up libglx-dev:mips64el (1.3.2-1) ... Setting up libglu1-mesa:mips64el (9.0.1-1) ... Setting up libwacom2:mips64el (1.6-1) ... Setting up libgl-dev:mips64el (1.3.2-1) ... Setting up libinput10:mips64el (1.16.4-1) ... Setting up libstdc++-10-dev:amd64 (10.2.0-23) ... Setting up g++-10 (10.2.0-23) ... Setting up libstdc++-9-dev:mips64el (9.3.0-19) ... Setting up libegl-dev:mips64el (1.3.2-1) ... Setting up libtool (2.4.6-14) ... Setting up libqt5gui5:amd64 (5.15.1+dfsg-4) ... Setting up libqt5gui5:mips64el (5.15.1+dfsg-4) ... Setting up libqt5widgets5:amd64 (5.15.1+dfsg-4) ... Setting up libqt5widgets5:mips64el (5.15.1+dfsg-4) ... Setting up libqt5help5:amd64 (5.15.1-2+b1) ... Setting up libqt5printsupport5:amd64 (5.15.1+dfsg-4) ... Setting up libqt5printsupport5:mips64el (5.15.1+dfsg-4) ... Setting up libglu1-mesa-dev:mips64el (9.0.1-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up qtbase5-dev:mips64el (5.15.1+dfsg-4) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.8) ... Setting up libqt5quick5:amd64 (5.15.1+dfsg-3) ... Setting up libqt5designer5:amd64 (5.15.1-2+b1) ... Setting up qhelpgenerator-qt5 (5.15.1-2+b1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha4-7) ... Setting up libqt5designercomponents5:amd64 (5.15.1-2+b1) ... Setting up libqt5quickwidgets5:amd64 (5.15.1+dfsg-3) ... Setting up qt5-assistant (5.15.1-2+b1) ... Setting up qttools5-dev-tools (5.15.1-2+b1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up debhelper (13.2.1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-5) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-3 dpkg-dev_1.20.5 g++-10_10.2.0-23 gcc-10_10.2.0-23 libc6-dev_2.31-5 libstdc++-10-dev_10.2.0-23 libstdc++-10-dev-mips64el-cross_10.2.0-17cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.0-23 libstdc++6-mips64el-cross_10.2.0-17cross1 linux-libc-dev_5.9.11-1 Package versions: adduser_3.118 apt_2.1.12 autoconf_2.69-11.1 automake_1:1.16.3-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 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2.1+lgpl-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.clustal.org/clustal2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/clustalx Vcs-Git: https://salsa.debian.org/med-team/clustalx.git Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Package-List: clustalx deb science optional arch=any Checksums-Sha1: 63196a4e113a22e5e575f223d76b7406f4f70795 341649 clustalx_2.1+lgpl.orig.tar.gz b7b02b1250b121b5162e6aa0e43a931c1518401e 15224 clustalx_2.1+lgpl-9.debian.tar.xz Checksums-Sha256: e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 341649 clustalx_2.1+lgpl.orig.tar.gz a72891b756770c26939b8dc96afd800dd2156057a47caa5f4085b53d362e8011 15224 clustalx_2.1+lgpl-9.debian.tar.xz Files: 5b1f2f1cc8e939411ab0f934cafa072a 341649 clustalx_2.1+lgpl.orig.tar.gz 6a04d1877358fa582cf4897c5296c45c 15224 clustalx_2.1+lgpl-9.debian.tar.xz -----BEGIN PGP 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made Fri Dec 4 22:20:42 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-9.dsc dpkg-source: info: extracting clustalx in /<> dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-4d3c6291-bca2-40ae-be0e-7fb490381053 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f moc_* dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure mips64el-linux-gnuabi64-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] 48 | void AlignmentParameters::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 588 | for(i = 0; i < len && i < gapMask->size(); i++) | ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 645 | for (i = 0; i < len && i < _secStructMask->size();i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 652 | for(i = 0; i < len && i < ssMask.size(); i++) | ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] 781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) | ~~~~~~~~~~~~~~~^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] 170 | bool blackAndWhite; | ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] 161 | std::vector* selectedColoredRes; | ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] 65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) | ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 225 | for(unsigned int j = 0; j < lengthLongestSeq; j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 235 | if(code >= 0 && code < conservationPixmaps->size()) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 280 | if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) | ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] 215 | int codeForSpace = clustalw::userParameters->resIndex( | ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 333 | if(i < secStructPixmaps->size() && i < secStructInfo.size()) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:344:51: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 344 | fontMetrics.width(secStructInfo[i])/2, | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/QtGui:26, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 569 | if(selectedRes >= selectedColoredRes->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 689 | for(int j = 1; j <= strongGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 693 | for(int j = 1; j <= weakGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 700 | if((i + _fRes - 1 < (*alignment)[j].size()) && | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 701 | (i + _fRes - 1 < (*alignment)[_fSeq].size())) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 725 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 737 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 760 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 771 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 878 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 927 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1039 | for(int j = 0; j < aminoAcid.size(); j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:1051:61: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1051 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/QtGui:26, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1079:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1079 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/QtGui:26, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1089:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1089 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/QtGui:26, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1099:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1099 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/QtGui:26, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1118:42: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1118 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/QtGui:26, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from AlignOutputFileNames.cpp:16: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from BootstrapTreeDialog.cpp:8: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] 74 | // tr("colorrules not found in the parameter file, using\ | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 85 | QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 160 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] 174 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] 157 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] 158 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 197 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] 211 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] 194 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] 195 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 229 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 238 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | if(colorNum > 0 && colorNum - 1 < colorPar.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void ColumnScoreParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function ‘std::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 147 | catch(ifstream::failure e) | ^ HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] 61 | int i, number, nlines; | ^~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 180 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 198 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:208:73: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 208 | (fontMetrics.width(QString::number(rulerNum))) / 2; | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qwidget.h:50, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qframe.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qlabel.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ HistogramWidget.cpp:241:80: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 241 | (fontMetrics.width(QString::number(0))) / 2, yPos, boxWidth, | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qwidget.h:50, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qframe.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qlabel.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void LowScoringSegParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qdebug.h:54, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborcommon.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborvalue.h:45, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qcborarray.h:43, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/QtCore:38, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] 198 | void MainWindow::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] 1454 | void MainWindow::writeViewer1AsPostscript(int type) | ~~~~^~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] 74 | void PairwiseParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(res.isLetter() && resNumber.size() > i - data->firstSeq) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 307 | if(res.isLetter() && resNumber.size() > seq) | ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 421 | if(res.isLetter() && resNumber.size() > i) | ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] 55 | int err; | ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] 73 | int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] 74 | int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 587 | if(data->nameHeader.size() > ix) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 730 | for(i = fr; i <= lr && i < ruler.length(); i++) | ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] 781 | int psX, psY, curveBottom; | ^~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] 375 | QRect redrawRect = event->rect(); | ^~~~~~~~~~ SeqNameWidget.cpp: In member function ‘int SeqNameWidget::setMaxNameLength()’: SeqNameWidget.cpp:443:65: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 443 | int length = fontMetrics.width(QString(name.c_str())); | ^ In file included from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/QtGui:26, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QtWidgets:3, from SeqNameWidget.cpp:58: /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from TreeOutputFileNames.cpp:7: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mips64el-linux-gnuabi64/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qpixmap.h:48, from /usr/include/mips64el-linux-gnuabi64/qt5/QtGui/qicon.h:46, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 162 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 837 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] 1715 | SeqArray::iterator posToAddTo = sectionToRealign.begin(); | ^~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 512 | bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 535 | string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 673 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 868 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1027 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1156 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1445 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1560 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2095 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2102 | catch(exception e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’: clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2351 | catch(VectorOutOfRange e) | ^ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 155 | auto_ptr fileParser; // Means we dont need to delete it! | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 426 | void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)’: clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 555 | catch(exception ex) | ^~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 34 | vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 199 | Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 444 | void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] 446 | int &structPenalties, int length) | ~~~~^~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 240 | void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function ‘std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds] 106 | delim[1] = 0; | ~~~~~~~^ clustalW/general/ClustalWResources.cpp:104:10: note: while referencing ‘delim’ 104 | char delim[1]; | ^~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] 33 | UserParameters::UserParameters(bool log) | ~~~~~^~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 251 | int n; | ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] 519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 221 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’: clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 41 | catch(bad_alloc) | ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] 520 | clustalObj->getHelp('C'); | ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here 521 | case 'Q': | ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1190 | system(lin1.c_str()); | ~~~~~~^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 170 | int count; | ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | tmpnam (buffer); | ~~~~~~~^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] 340 | int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] 359 | string phylipName) | ~~~~~~~^~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1657 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1717 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1103 | return (maxRes); | ^ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | auto_ptr Tree::createSets(int firstSeq, int lastSeq) | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 280 | auto_ptr progAlignSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 31 | auto_ptr | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 103 | auto_ptr | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 195 | auto_ptr | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 200 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 208 | auto_ptr | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 214 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 439 | auto_ptr | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 445 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 485 | auto_ptr | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 490 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 503 | auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 506 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 17 | auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 21 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 27 | auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_conv.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/10/locale:43, from /usr/mips64el-linux-gnuabi64/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -dM -E -o moc_predefs.h /usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:10: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_AlignOutputFileNames.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:10: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_BootstrapTreeDialog.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include FileDialog.h -o moc_FileDialog.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include mainwindow.h -o moc_mainwindow.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include SearchForString.h -o moc_SearchForString.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:10: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_TreeOutputFileNames.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I/usr/mips64el-linux-gnuabi64/include/c++/10 -I/usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64 -I/usr/mips64el-linux-gnuabi64/include/c++/10/backward -I/usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/include -I/usr/mips64el-linux-gnuabi64/include -I/usr/include/mips64el-linux-gnuabi64 -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp mips64el-linux-gnuabi64-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mips64el-linux-gnuabi64/qt5 -I/usr/include/mips64el-linux-gnuabi64/qt5/QtWidgets -I/usr/include/mips64el-linux-gnuabi64/qt5/QtGui -I/usr/include/mips64el-linux-gnuabi64/qt5/QtXml -I/usr/include/mips64el-linux-gnuabi64/qt5/QtCore -I. -I/usr/lib/mips64el-linux-gnuabi64/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:10: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/memory:83, from moc_WritePostscriptFile.cpp:9: /usr/mips64el-linux-gnuabi64/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mips64el-linux-gnuabi64-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o /usr/lib/mips64el-linux-gnuabi64/libQt5Widgets.so /usr/lib/mips64el-linux-gnuabi64/libQt5Gui.so /usr/lib/mips64el-linux-gnuabi64/libQt5Xml.so /usr/lib/mips64el-linux-gnuabi64/libQt5Core.so -lGL -lpthread /usr/lib/gcc-cross/mips64el-linux-gnuabi64/10/../../../../mips64el-linux-gnuabi64/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-9_mips64el.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-9_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../clustalx_2.1+lgpl-9_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-06T04:49:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-9_mips64el.changes: ------------------------------------- Format: 1.8 Date: Fri, 04 Dec 2020 22:57:37 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.1+lgpl-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.1+lgpl-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) * No quotet entry in mailcap Checksums-Sha1: 48343f1e144a680e58b3abe9e04a45ca4b9c9aae 7600952 clustalx-dbgsym_2.1+lgpl-9_mips64el.deb 9af002a4cf8b9a964e8edfb803fd4c61531e6f34 9583 clustalx_2.1+lgpl-9_mips64el.buildinfo 62752c581f09e4baae65c280c738c9967f93c734 395420 clustalx_2.1+lgpl-9_mips64el.deb Checksums-Sha256: c2d129b0561ec824209035eaf9e2e567cdfdfbcd24c569c294ab5c5b5b90cde0 7600952 clustalx-dbgsym_2.1+lgpl-9_mips64el.deb cf2f9096642bf500c3f4c59d27c8dc53b9ef77a9e5176b5825ed0d1b465595f5 9583 clustalx_2.1+lgpl-9_mips64el.buildinfo 3ab4ab2a72880bfab4574170fb386ff6c1f1a883f7db008080c6ad90885f835d 395420 clustalx_2.1+lgpl-9_mips64el.deb Files: aa4a676f642992e69695063acbbde71c 7600952 debug optional clustalx-dbgsym_2.1+lgpl-9_mips64el.deb c9adf2a928a69a4dca5ba39101fac6b6 9583 science optional clustalx_2.1+lgpl-9_mips64el.buildinfo d3e227456febd78cba11dc15a45d0a5b 395420 science optional clustalx_2.1+lgpl-9_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalx Binary: clustalx clustalx-dbgsym Architecture: mips64el Version: 2.1+lgpl-9 Checksums-Md5: aa4a676f642992e69695063acbbde71c 7600952 clustalx-dbgsym_2.1+lgpl-9_mips64el.deb d3e227456febd78cba11dc15a45d0a5b 395420 clustalx_2.1+lgpl-9_mips64el.deb Checksums-Sha1: 48343f1e144a680e58b3abe9e04a45ca4b9c9aae 7600952 clustalx-dbgsym_2.1+lgpl-9_mips64el.deb 62752c581f09e4baae65c280c738c9967f93c734 395420 clustalx_2.1+lgpl-9_mips64el.deb Checksums-Sha256: c2d129b0561ec824209035eaf9e2e567cdfdfbcd24c569c294ab5c5b5b90cde0 7600952 clustalx-dbgsym_2.1+lgpl-9_mips64el.deb 3ab4ab2a72880bfab4574170fb386ff6c1f1a883f7db008080c6ad90885f835d 395420 clustalx_2.1+lgpl-9_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 06 Dec 2020 04:49:30 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.3-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1~rc3-1), binutils (= 2.35.1-3), binutils-common (= 2.35.1-3), binutils-x86-64-linux-gnu (= 2.35.1-3), bsdextrautils (= 2.36.1-2), bsdutils (= 1:2.36.1-2), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.0-23), dash (= 0.5.11+git20200708+dd9ef66-2), debconf (= 1.5.74), debhelper (= 13.2.1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), fontconfig (= 2.13.1-4.2), fontconfig-config (= 2.13.1-4.2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.0-23), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.0-23), gcc-10-base (= 10.2.0-23), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), iso-codes (= 4.5.0-1), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-23), libatomic1 (= 10.2.0-23), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3.1), libaudit1 (= 1:2.8.5-3.1), libavahi-client3 (= 0.8-3), libavahi-common-data (= 0.8-3), libavahi-common3 (= 0.8-3), libbinutils (= 2.35.1-3), libblkid1 (= 2.36.1-2), libbrotli1 (= 1.0.9-2+b1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-5), libc-dev-bin (= 2.31-5), libc6 (= 2.31-5), libc6-dev (= 2.31-5), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcap2-bin (= 1:2.44-1), libcc1-0 (= 10.2.0-23), libclang1-11 (= 1:11.0.0-5+b1), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-3), libctf0 (= 2.35.1-3), libcups2 (= 2.3.3op1-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdbus-1-3 (= 1.12.20-1), libdebconfclient0 (= 0.255), libdebhelper-perl (= 13.2.1), libdouble-conversion3 (= 3.1.5-6.1), libdpkg-perl (= 1.20.5), libdrm-amdgpu1 (= 2.4.103-2), libdrm-common (= 2.4.103-2), libdrm-intel1 (= 2.4.103-2), libdrm-nouveau2 (= 2.4.103-2), libdrm-radeon1 (= 2.4.103-2), libdrm2 (= 2.4.103-2), libdw1 (= 0.182-1), libedit2 (= 3.1-20191231-1), libegl-dev (= 1.3.2-1), libegl-mesa0 (= 20.2.3-1), libegl1 (= 1.3.2-1), libelf1 (= 0.182-1), libevdev2 (= 1.10.0+dfsg-1), libexpat1 (= 2.2.10-1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libfontconfig1 (= 2.13.1-4.2), libfreetype6 (= 2.10.2+dfsg-4), libgbm1 (= 20.2.3-1), libgcc-10-dev (= 10.2.0-23), libgcc-s1 (= 10.2.0-23), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgl-dev (= 1.3.2-1), libgl1 (= 1.3.2-1), libgl1-mesa-dri (= 20.2.3-1), libglapi-mesa (= 20.2.3-1), libglib2.0-0 (= 2.66.3-2), libglu1-mesa (= 9.0.1-1), libglu1-mesa-dev (= 9.0.1-1), libglvnd0 (= 1.3.2-1), libglx-dev (= 1.3.2-1), libglx-mesa0 (= 20.2.3-1), libglx0 (= 1.3.2-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.6.15-4), libgomp1 (= 10.2.0-23), libgpg-error0 (= 1.38-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-4), libgstreamer-plugins-base1.0-0 (= 1.18.1-1), libgstreamer1.0-0 (= 1.18.1-1), libgudev-1.0-0 (= 234-1), libharfbuzz0b (= 2.6.7-1), libhogweed6 (= 3.6-2), libhyphen0 (= 2.8.8-7), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-4), libinput-bin (= 1.16.4-1), libinput10 (= 1.16.4-1), libisl23 (= 0.23-1), libitm1 (= 10.2.0-23), libjpeg62-turbo (= 1:2.0.5-1.1), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libllvm11 (= 1:11.0.0-5+b1), liblsan0 (= 10.2.0-23), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmd4c0 (= 0.4.6-1), libmount1 (= 2.36.1-2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libmtdev1 (= 1.1.6-1), libnettle8 (= 3.6-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), liborc-0.4-0 (= 1:0.4.32-1), libp11-kit0 (= 0.23.21-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpciaccess0 (= 0.16-1), libpcre2-16-0 (= 10.35-2), libpcre2-8-0 (= 10.35-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libpng16-16 (= 1.6.37-3), libpthread-stubs0-dev (= 0.4-1), libqt5concurrent5 (= 5.15.1+dfsg-4), libqt5core5a (= 5.15.1+dfsg-4), libqt5dbus5 (= 5.15.1+dfsg-4), libqt5designer5 (= 5.15.1-2+b1), libqt5designercomponents5 (= 5.15.1-2+b1), libqt5gui5 (= 5.15.1+dfsg-4), libqt5help5 (= 5.15.1-2+b1), libqt5network5 (= 5.15.1+dfsg-4), libqt5positioning5 (= 5.15.1+dfsg-2), libqt5printsupport5 (= 5.15.1+dfsg-4), libqt5qml5 (= 5.15.1+dfsg-3), libqt5qmlmodels5 (= 5.15.1+dfsg-3), libqt5quick5 (= 5.15.1+dfsg-3), libqt5quickwidgets5 (= 5.15.1+dfsg-3), libqt5sensors5 (= 5.15.1-2), libqt5sql5 (= 5.15.1+dfsg-4), libqt5sql5-sqlite (= 5.15.1+dfsg-4), libqt5test5 (= 5.15.1+dfsg-4), libqt5webchannel5 (= 5.15.1-2), libqt5webkit5 (= 5.212.0~alpha4-7), libqt5widgets5 (= 5.15.1+dfsg-4), libqt5xml5 (= 5.15.1+dfsg-4), libquadmath0 (= 10.2.0-23), libseccomp2 (= 2.5.0-3), libselinux1 (= 3.1-2+b1), libsensors-config (= 1:3.6.0-2), libsensors5 (= 1:3.6.0-2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-2), libsqlite3-0 (= 3.34.0-1), libssl1.1 (= 1.1.1h-1), libstdc++-10-dev (= 10.2.0-23), libstdc++6 (= 10.2.0-23), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.1-3), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-23), libubsan1 (= 10.2.0-23), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-3), libunistring2 (= 0.9.10-4), libunwind8 (= 1.3.2-2), libuuid1 (= 2.36.1-2), libvulkan-dev (= 1.2.154.1-1), libvulkan1 (= 1.2.154.1-1), libwacom-common (= 1.6-1), libwacom2 (= 1.6-1), libwayland-client0 (= 1.18.0-2~exp1.1), libwayland-server0 (= 1.18.0-2~exp1.1), libwebp6 (= 0.6.1-2+b1), libwoff1 (= 1.0.2-1+b1), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libx11-dev (= 2:1.6.12-1), libx11-xcb1 (= 2:1.6.12-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-dri2-0 (= 1.14-2), libxcb-dri3-0 (= 1.14-2), libxcb-glx0 (= 1.14-2), libxcb-icccm4 (= 0.4.1-1.1), libxcb-image0 (= 0.4.0-1+b3), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present0 (= 1.14-2), libxcb-randr0 (= 1.14-2), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.14-2), libxcb-shape0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb-sync1 (= 1.14-2), libxcb-util1 (= 0.4.0-1+b1), libxcb-xfixes0 (= 1.14-2), libxcb-xinerama0 (= 1.14-2), libxcb-xinput0 (= 1.14-2), libxcb-xkb1 (= 1.14-2), libxcb1 (= 1.14-2), libxcb1-dev (= 1.14-2), libxdamage1 (= 1:1.1.5-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxfixes3 (= 1:5.0.3-2), libxkbcommon-x11-0 (= 1.0.3-2), libxkbcommon0 (= 1.0.3-2), libxml2 (= 2.9.10+dfsg-6.3), libxshmfence1 (= 1.3-1), libxslt1.1 (= 1.1.34-4), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.9-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.9.11-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), qdoc-qt5 (= 5.15.1-2+b1), qhelpgenerator-qt5 (= 5.15.1-2+b1), qt5-assistant (= 5.15.1-2+b1), qt5-qmake (= 5.15.1+dfsg-4), qt5-qmake-bin (= 5.15.1+dfsg-4), qtattributionsscanner-qt5 (= 5.15.1-2+b1), qtbase5-dev (= 5.15.1+dfsg-4), qtbase5-dev-tools (= 5.15.1+dfsg-4), qtchooser (= 66-2), qttools5-dev-tools (= 5.15.1-2+b1), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), shared-mime-info (= 2.0-1), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), ucf (= 3.0043), util-linux (= 2.36.1-2), x11-common (= 1:7.7+21), x11proto-core-dev (= 2020.1-1), x11proto-dev (= 2020.1-1), x11proto-xext-dev (= 2020.1-1), xkb-data (= 2.29-2), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607119057" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-9_mips64el.deb --------------------------------------- new Debian package, version 2.0. size 7600952 bytes: control archive=540 bytes. 384 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-9 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 7723 Depends: clustalx (= 2.1+lgpl-9) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: 57a43988d026179284df9c007c2701a268e546a5 drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/57/ -rw-r--r-- root/root 7897720 2020-12-04 21:57 ./usr/lib/debug/.build-id/57/a43988d026179284df9c007c2701a268e546a5.debug drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-9_mips64el.deb -------------------------------- new Debian package, version 2.0. size 395420 bytes: control archive=1456 bytes. 1551 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-9 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1617 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/bin/ -rwxr-xr-x root/root 1544448 2020-12-04 21:57 ./usr/bin/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/packages/ -rw-r--r-- root/root 112 2020-12-04 21:57 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/applications/ -rw-r--r-- root/root 876 2020-12-04 21:57 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2020-12-04 21:57 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 4670 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1860 2020-12-04 21:57 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2020-12-04 21:57 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2020-12-04 21:57 ./usr/share/mime/packages/clustalx.xml lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [551 B] Get:5 copy:/<>/apt_archive ./ Packages [643 B] Fetched 2157 B in 0s (96.2 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 6749 kB of archives. After this operation, 20.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1~rc3-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1~rc3-1 [168 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b4 [71.9 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b6 [38.1 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1 [18.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1 [14.2 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b6 [63.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1 [12.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1 [21.8 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6749 kB in 0s (28.8 MB/s) Selecting previously unselected package readline-common. (Reading database ... 28328 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1~rc3-1_all.deb ... Unpacking readline-common (8.1~rc3-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1~rc3-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1~rc3-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package gpg. Preparing to unpack .../05-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../06-libaliased-perl_0.34-1_all.deb ... Unpacking libaliased-perl (0.34-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../07-libapt-pkg-perl_0.1.36+b4_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b4) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../08-libb-hooks-op-check-perl_0.22-1+b3_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../09-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../10-libdevel-callchecker-perl_0.008-1+b2_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../11-libparams-classify-perl_0.015-1+b3_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../12-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../13-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../14-libmodule-implementation-perl_0.09-1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../15-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../16-libvariable-magic-perl_0.62-1+b3_amd64.deb ... Unpacking libvariable-magic-perl (0.62-1+b3) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../17-libb-hooks-endofscope-perl_0.24-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../18-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../19-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../20-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../21-libclass-xsaccessor-perl_1.19-3+b6_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b6) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../22-libclone-perl_0.45-1+b1_amd64.deb ... Unpacking libclone-perl (0.45-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../23-libconfig-tiny-perl_2.24-1_all.deb ... Unpacking libconfig-tiny-perl (2.24-1) ... Selecting previously unselected package libcpanel-json-xs-perl. Preparing to unpack .../24-libcpanel-json-xs-perl_4.25-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl (4.25-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../25-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../26-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../27-libiterator-perl_0.03+ds1-1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../28-libiterator-util-perl_0.02+ds1-1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../29-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../30-liblist-moreutils-perl_0.416-1+b6_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b6) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../31-libparams-util-perl_1.102-1+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-1+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../32-libsub-install-perl_0.928-1_all.deb ... 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Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../49-libipc-run3-perl_0.048-2_all.deb ... Unpacking libipc-run3-perl (0.048-2) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../50-libjson-maybexs-perl_1.004003-1_all.deb ... Unpacking libjson-maybexs-perl (1.004003-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../51-liblist-compare-perl_0.55-1_all.deb ... Unpacking liblist-compare-perl (0.55-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../52-liblist-utilsby-perl_0.11-1_all.deb ... Unpacking liblist-utilsby-perl (0.11-1) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../53-liblzo2-2_2.10-2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-2) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../54-libmarkdown2_2.2.6-1_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.6-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../55-librole-tiny-perl_2.001004-1_all.deb ... Unpacking librole-tiny-perl (2.001004-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../56-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../57-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../58-libmoo-perl_2.004004-1_all.deb ... Unpacking libmoo-perl (2.004004-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../59-libmoox-aliases-perl_0.001006-1_all.deb ... Unpacking libmoox-aliases-perl (0.001006-1) ... Selecting previously unselected package libmouse-perl. 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Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-5) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 169412 Build-Time: 307 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 54 Job: clustalx_2.1+lgpl-9 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 373 Source-Version: 2.1+lgpl-9 Space: 169412 Status: successful Version: 2.1+lgpl-9 -------------------------------------------------------------------------------- Finished at 2020-12-06T04:49:30Z Build needed 00:06:13, 169412k disk space