sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | clustalx 2.1+lgpl-9 (mipsel) Thu, 24 Dec 2020 06:25:30 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-9 Source Version: 2.1+lgpl-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-f6a8f4e8-e729-4cee-9a81-23a15417420d' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-r43Ln0/resolver-RsiC1j' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-23-0800.12.pdiff [4570 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-23-1401.30.pdiff [17.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-23-2000.32.pdiff [20.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-24-0200.31.pdiff [11.4 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-23-0800.12.pdiff [4907 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-23-1401.30.pdiff [35.6 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-23-2000.32.pdiff [18.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-24-0200.31.pdiff [11.4 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-24-0200.31.pdiff [15.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-24-0200.31.pdiff [15.9 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8248 kB] Fetched 8585 kB in 1s (5760 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libctf-nobfd0 libctf0 tzdata 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5102 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 tzdata all 2020e-1 [284 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libctf0 amd64 2.35.1-6 [53.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libctf-nobfd0 amd64 2.35.1-6 [109 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.35.1-6 [1806 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.35.1-6 [571 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.35.1-6 [60.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.35.1-6 [2218 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5102 kB in 3s (1481 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10442 files and directories currently installed.) Preparing to unpack .../0-tzdata_2020e-1_all.deb ... Unpacking tzdata (2020e-1) over (2020d-1) ... Preparing to unpack .../1-libctf0_2.35.1-6_amd64.deb ... Unpacking libctf0:amd64 (2.35.1-6) over (2.35.1-5) ... Preparing to unpack .../2-libctf-nobfd0_2.35.1-6_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.35.1-6) over (2.35.1-5) ... Preparing to unpack .../3-binutils-x86-64-linux-gnu_2.35.1-6_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.35.1-6) over (2.35.1-5) ... Preparing to unpack .../4-libbinutils_2.35.1-6_amd64.deb ... Unpacking libbinutils:amd64 (2.35.1-6) over (2.35.1-5) ... Preparing to unpack .../5-binutils_2.35.1-6_amd64.deb ... Unpacking binutils (2.35.1-6) over (2.35.1-5) ... Preparing to unpack .../6-binutils-common_2.35.1-6_amd64.deb ... Unpacking binutils-common:amd64 (2.35.1-6) over (2.35.1-5) ... Setting up binutils-common:amd64 (2.35.1-6) ... Setting up libctf-nobfd0:amd64 (2.35.1-6) ... Setting up tzdata (2020e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 24 06:25:45 UTC 2020. Universal Time is now: Thu Dec 24 06:25:45 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libbinutils:amd64 (2.35.1-6) ... Setting up libctf0:amd64 (2.35.1-6) ... Setting up binutils-x86-64-linux-gnu (2.35.1-6) ... Setting up binutils (2.35.1-6) ... Processing triggers for libc-bin (2.31-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (dsc) [2084 B] Get:2 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (tar) [342 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-9 (diff) [15.2 kB] Fetched 359 kB in 0s (25.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-r43Ln0/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-r43Ln0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [421 B] Get:5 copy:/<>/apt_archive ./ Packages [508 B] Fetched 1886 B in 0s (77.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-9-base:mipsel gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libavahi-client3 libavahi-client3:mipsel libavahi-common-data libavahi-common-data:mipsel libavahi-common3 libavahi-common3:mipsel libblkid1:mipsel libbrotli1 libbrotli1:mipsel libbsd0 libbsd0:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcap2 libcap2-bin libclang1-11 libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcups2 libcups2:mipsel libdbus-1-3 libdbus-1-3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:mipsel libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:mipsel libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:mipsel libdrm-radeon1 libdrm-radeon1:mipsel libdrm2 libdrm2:mipsel libdw1 libedit2 libedit2:mipsel libegl-dev:mipsel libegl-mesa0 libegl-mesa0:mipsel libegl1 libegl1:mipsel libelf1 libelf1:mipsel libevdev2 libevdev2:mipsel libexpat1 libexpat1:mipsel libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:mipsel libfreetype6 libfreetype6:mipsel libgbm1 libgbm1:mipsel libgcc-10-dev-mipsel-cross libgcc-9-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libgcrypt20:mipsel libgl-dev:mipsel libgl1 libgl1:mipsel libgl1-mesa-dri libgl1-mesa-dri:mipsel libglapi-mesa libglapi-mesa:mipsel libglib2.0-0 libglib2.0-0:mipsel libglu1-mesa:mipsel libglu1-mesa-dev:mipsel libglvnd0 libglvnd0:mipsel libglx-dev:mipsel libglx-mesa0 libglx-mesa0:mipsel libglx0 libglx0:mipsel libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgraphite2-3 libgraphite2-3:mipsel libgssapi-krb5-2 libgssapi-krb5-2:mipsel libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:mipsel libharfbuzz0b libharfbuzz0b:mipsel libhogweed6:mipsel libhyphen0 libice6 libice6:mipsel libicu67 libicu67:mipsel libidn2-0:mipsel libinput-bin libinput10 libinput10:mipsel libio-string-perl libjpeg62-turbo libjpeg62-turbo:mipsel libk5crypto3 libk5crypto3:mipsel libkeyutils1 libkeyutils1:mipsel libkrb5-3 libkrb5-3:mipsel libkrb5support0 libkrb5support0:mipsel libllvm11 libllvm11:mipsel liblocale-gettext-perl liblz4-1:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libmd4c0 libmd4c0:mipsel libmount1:mipsel libmtdev1 libmtdev1:mipsel libnettle8:mipsel libnsl-dev libnsl-dev:mipsel libnsl2 libnsl2:mipsel liborc-0.4-0 libp11-kit0:mipsel libpciaccess0 libpcre2-16-0 libpcre2-16-0:mipsel libpcre2-8-0:mipsel libpcre3:mipsel libperl5.32 libpipeline1 libpng16-16 libpng16-16:mipsel libpthread-stubs0-dev:mipsel libqt5concurrent5:mipsel libqt5core5a libqt5core5a:mipsel libqt5dbus5 libqt5dbus5:mipsel libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:mipsel libqt5help5 libqt5network5 libqt5network5:mipsel libqt5positioning5 libqt5printsupport5 libqt5printsupport5:mipsel libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:mipsel libqt5sql5-sqlite libqt5test5:mipsel libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:mipsel libqt5xml5 libqt5xml5:mipsel libselinux1:mipsel libsensors-config libsensors5 libsensors5:mipsel libsigsegv2 libsm6 libsm6:mipsel libsqlite3-0 libssl1.1 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev-mipsel-cross libstdc++-9-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsystemd0:mipsel libtasn1-6:mipsel libtinfo6:mipsel libtirpc-common libtirpc-dev libtirpc-dev:mipsel libtirpc3 libtirpc3:mipsel libtool libuchardet0 libudev1:mipsel libunistring2:mipsel libunwind8 libuuid1:mipsel libvulkan-dev:mipsel libvulkan1 libvulkan1:mipsel libwacom-common libwacom2 libwacom2:mipsel libwayland-client0 libwayland-client0:mipsel libwayland-server0 libwayland-server0:mipsel libwebp6 libwoff1 libx11-6 libx11-6:mipsel libx11-data libx11-dev:mipsel libx11-xcb1 libx11-xcb1:mipsel libxau-dev:mipsel libxau6 libxau6:mipsel libxcb-dri2-0 libxcb-dri2-0:mipsel libxcb-dri3-0 libxcb-dri3-0:mipsel libxcb-glx0 libxcb-glx0:mipsel libxcb-icccm4 libxcb-icccm4:mipsel libxcb-image0 libxcb-image0:mipsel libxcb-keysyms1 libxcb-keysyms1:mipsel libxcb-present0 libxcb-present0:mipsel libxcb-randr0 libxcb-randr0:mipsel libxcb-render-util0 libxcb-render-util0:mipsel libxcb-render0 libxcb-render0:mipsel libxcb-shape0 libxcb-shape0:mipsel libxcb-shm0 libxcb-shm0:mipsel libxcb-sync1 libxcb-sync1:mipsel libxcb-util1 libxcb-util1:mipsel libxcb-xfixes0 libxcb-xfixes0:mipsel libxcb-xinerama0 libxcb-xinerama0:mipsel libxcb-xinput0 libxcb-xinput0:mipsel libxcb-xkb1 libxcb-xkb1:mipsel libxcb1 libxcb1:mipsel libxcb1-dev:mipsel libxdamage1 libxdamage1:mipsel libxdmcp-dev:mipsel libxdmcp6 libxdmcp6:mipsel libxext-dev:mipsel libxext6 libxext6:mipsel libxfixes3 libxfixes3:mipsel libxkbcommon-x11-0 libxkbcommon-x11-0:mipsel libxkbcommon0 libxkbcommon0:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender1 libxrender1:mipsel libxshmfence1 libxshmfence1:mipsel libxslt1.1 libxxf86vm1 libxxf86vm1:mipsel libyaml-perl libz3-4 libz3-4:mipsel libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:mipsel qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:mipsel qtbase5-dev-tools qtchooser qttools5-dev-tools sensible-utils shared-mime-info ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-mipsel-linux-gnu gcc-10-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel cups-common cups-common:mipsel gnupg git bzr rng-tools:mipsel gnutls-bin:mipsel krb5-doc krb5-user krb5-doc:mipsel krb5-user:mipsel libvisual-0.4-plugins gstreamer1.0-tools pciutils libthai0 libthai0:mipsel qt5-image-formats-plugins qtwayland5 qt5-image-formats-plugins:mipsel qtwayland5:mipsel qt5-qmltooling-plugins lm-sensors lm-sensors:mipsel libstdc++-10-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc:mipsel libxcb-doc:mipsel libxext-doc:mipsel libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl qt5-doc default-libmysqlclient-dev:mipsel firebird-dev:mipsel libpq-dev:mipsel libsqlite3-dev:mipsel unixodbc-dev:mipsel Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libnss-nis:mipsel libnss-nisplus:mipsel libpam-cap dbus dbus:mipsel libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data xdg-user-dirs libglib2.0-data:mipsel xdg-user-dirs:mipsel libgpg-error-l10n:mipsel gstreamer1.0-plugins-base krb5-locales krb5-locales:mipsel qttranslations5-l10n qttranslations5-l10n:mipsel libqt5svg5 qt5-gtk-platformtheme libqt5svg5:mipsel qt5-gtk-platformtheme:mipsel geoclue-2.0 libqt5sql5-sqlite:mipsel | libqt5sql5-mysql:mipsel | libqt5sql5-odbc:mipsel | libqt5sql5-psql:mipsel | libqt5sql5-tds:mipsel | libqt5sql5-ibase:mipsel libltdl-dev uuid-runtime:mipsel mesa-vulkan-drivers | vulkan-icd mesa-vulkan-drivers:mipsel | vulkan-icd:mipsel libwacom-bin libwacom-bin:mipsel libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl libqt5opengl5-dev:mipsel The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-9-base:mipsel gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libavahi-client3 libavahi-client3:mipsel libavahi-common-data libavahi-common-data:mipsel libavahi-common3 libavahi-common3:mipsel libblkid1:mipsel libbrotli1 libbrotli1:mipsel libbsd0 libbsd0:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcap2 libcap2-bin libclang1-11 libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcups2 libcups2:mipsel libdbus-1-3 libdbus-1-3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdouble-conversion3 libdouble-conversion3:mipsel libdpkg-perl libdrm-amdgpu1 libdrm-amdgpu1:mipsel libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:mipsel libdrm-radeon1 libdrm-radeon1:mipsel libdrm2 libdrm2:mipsel libdw1 libedit2 libedit2:mipsel libegl-dev:mipsel libegl-mesa0 libegl-mesa0:mipsel libegl1 libegl1:mipsel libelf1 libelf1:mipsel libevdev2 libevdev2:mipsel libexpat1 libexpat1:mipsel libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:mipsel libfreetype6 libfreetype6:mipsel libgbm1 libgbm1:mipsel libgcc-10-dev-mipsel-cross libgcc-9-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libgcrypt20:mipsel libgl-dev:mipsel libgl1 libgl1:mipsel libgl1-mesa-dri libgl1-mesa-dri:mipsel libglapi-mesa libglapi-mesa:mipsel libglib2.0-0 libglib2.0-0:mipsel libglu1-mesa:mipsel libglu1-mesa-dev:mipsel libglvnd0 libglvnd0:mipsel libglx-dev:mipsel libglx-mesa0 libglx-mesa0:mipsel libglx0 libglx0:mipsel libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgraphite2-3 libgraphite2-3:mipsel libgssapi-krb5-2 libgssapi-krb5-2:mipsel libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:mipsel libharfbuzz0b libharfbuzz0b:mipsel libhogweed6:mipsel libhyphen0 libice6 libice6:mipsel libicu67 libicu67:mipsel libidn2-0:mipsel libinput-bin libinput10 libinput10:mipsel libio-string-perl libjpeg62-turbo libjpeg62-turbo:mipsel libk5crypto3 libk5crypto3:mipsel libkeyutils1 libkeyutils1:mipsel libkrb5-3 libkrb5-3:mipsel libkrb5support0 libkrb5support0:mipsel libllvm11 libllvm11:mipsel liblocale-gettext-perl liblz4-1:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libmd4c0 libmd4c0:mipsel libmount1:mipsel libmtdev1 libmtdev1:mipsel libnettle8:mipsel libnsl-dev libnsl-dev:mipsel libnsl2 libnsl2:mipsel liborc-0.4-0 libp11-kit0:mipsel libpciaccess0 libpcre2-16-0 libpcre2-16-0:mipsel libpcre2-8-0:mipsel libpcre3:mipsel libperl5.32 libpipeline1 libpng16-16 libpng16-16:mipsel libpthread-stubs0-dev:mipsel libqt5concurrent5:mipsel libqt5core5a libqt5core5a:mipsel libqt5dbus5 libqt5dbus5:mipsel libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:mipsel libqt5help5 libqt5network5 libqt5network5:mipsel libqt5positioning5 libqt5printsupport5 libqt5printsupport5:mipsel libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:mipsel libqt5sql5-sqlite libqt5test5:mipsel libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:mipsel libqt5xml5 libqt5xml5:mipsel libselinux1:mipsel libsensors-config libsensors5 libsensors5:mipsel libsigsegv2 libsm6 libsm6:mipsel libsqlite3-0 libssl1.1 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev-mipsel-cross libstdc++-9-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsystemd0:mipsel libtasn1-6:mipsel libtinfo6:mipsel libtirpc-common libtirpc-dev libtirpc-dev:mipsel libtirpc3 libtirpc3:mipsel libtool libuchardet0 libudev1:mipsel libunistring2:mipsel libunwind8 libuuid1:mipsel libvulkan-dev:mipsel libvulkan1 libvulkan1:mipsel libwacom-common libwacom2 libwacom2:mipsel libwayland-client0 libwayland-client0:mipsel libwayland-server0 libwayland-server0:mipsel libwebp6 libwoff1 libx11-6 libx11-6:mipsel libx11-data libx11-dev:mipsel libx11-xcb1 libx11-xcb1:mipsel libxau-dev:mipsel libxau6 libxau6:mipsel libxcb-dri2-0 libxcb-dri2-0:mipsel libxcb-dri3-0 libxcb-dri3-0:mipsel libxcb-glx0 libxcb-glx0:mipsel libxcb-icccm4 libxcb-icccm4:mipsel libxcb-image0 libxcb-image0:mipsel libxcb-keysyms1 libxcb-keysyms1:mipsel libxcb-present0 libxcb-present0:mipsel libxcb-randr0 libxcb-randr0:mipsel libxcb-render-util0 libxcb-render-util0:mipsel libxcb-render0 libxcb-render0:mipsel libxcb-shape0 libxcb-shape0:mipsel libxcb-shm0 libxcb-shm0:mipsel libxcb-sync1 libxcb-sync1:mipsel libxcb-util1 libxcb-util1:mipsel libxcb-xfixes0 libxcb-xfixes0:mipsel libxcb-xinerama0 libxcb-xinerama0:mipsel libxcb-xinput0 libxcb-xinput0:mipsel libxcb-xkb1 libxcb-xkb1:mipsel libxcb1 libxcb1:mipsel libxcb1-dev:mipsel libxdamage1 libxdamage1:mipsel libxdmcp-dev:mipsel libxdmcp6 libxdmcp6:mipsel libxext-dev:mipsel libxext6 libxext6:mipsel libxfixes3 libxfixes3:mipsel libxkbcommon-x11-0 libxkbcommon-x11-0:mipsel libxkbcommon0 libxkbcommon0:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender1 libxrender1:mipsel libxshmfence1 libxshmfence1:mipsel libxslt1.1 libxxf86vm1 libxxf86vm1:mipsel libyaml-perl libz3-4 libz3-4:mipsel libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:mipsel qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:mipsel qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-main-dummy:mipsel sensible-utils shared-mime-info ucf x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:mipsel 0 upgraded, 375 newly installed, 0 to remove and 0 not upgraded. Need to get 288 MB of archives. After this operation, 1177 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-3 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-6 [2820 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-6 [4105 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.4-1 [1367 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libdw1 amd64 0.182-1 [234 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libunwind8 amd64 1.3.2-2 [54.5 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2-bin amd64 1:2.44-1 [32.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.18.2-1 [2227 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 liborc-0.4-0 amd64 1:0.4.32-1 [192 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 iso-codes all 4.5.0-1 [2793 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.18.2-1 [2150 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-5 [8625 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdouble-conversion3 amd64 3.1.5-6.1 [41.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-16-0 amd64 10.36-2 [231 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5core5a amd64 5.15.2+dfsg-2 [1820 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.103-2 [14.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm2 amd64 2.4.103-2 [41.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-server0 amd64 1.18.0-2~exp1.1 [34.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgbm1 amd64 20.2.6-1 [74.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libglapi-mesa amd64 20.2.6-1 [71.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-client0 amd64 1.18.0-2~exp1.1 [26.9 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.12-1 [203 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri2-0 amd64 1.14-2 [103 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri3-0 amd64 1.14-2 [102 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-present0 amd64 1.14-2 [101 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-sync1 amd64 1.14-2 [105 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xfixes0 amd64 1.14-2 [105 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libegl-mesa0 amd64 20.2.6-1 [142 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libegl1 amd64 1.3.2-1 [34.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.12-1 [311 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.12-1 [770 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-glx0 amd64 1.14-2 [118 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.103-2 [28.4 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-intel1 amd64 2.4.103-2 [71.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.103-2 [26.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.103-2 [30.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm11 amd64 1:11.0.1~+rc2-1 [17.9 MB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.6.0-2 [32.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-2 [53.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libvulkan1 amd64 1.2.154.1-1 [102 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1-mesa-dri amd64 20.2.6-1 [9606 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libglx-mesa0 amd64 20.2.6-1 [186 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.7-1 [1467 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+21 [252 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libevdev2 amd64 1.10.0+dfsg-1 [34.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libgudev-1.0-0 amd64 234-1 [14.7 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom-common all 1.7-1 [48.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom2 amd64 1.7-1 [21.9 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libinput-bin amd64 1.16.4-3 [23.0 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libinput10 amd64 1.16.4-3 [118 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libmd4c0 amd64 0.4.6-1 [43.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libdbus-1-3 amd64 1.12.20-1 [217 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5dbus5 amd64 5.15.2+dfsg-2 [228 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1i-1 [1551 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.18.3-4 [65.1 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.18.3-4 [113 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.18.3-4 [362 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.18.3-4 [165 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5network5 amd64 5.15.2+dfsg-2 [657 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-1+b3 [24.3 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-randr0 amd64 1.14-2 [112 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shape0 amd64 1.14-2 [102 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinerama0 amd64 1.14-2 [101 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinput0 amd64 1.14-2 [125 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xkb1 amd64 1.14-2 [126 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 xkb-data all 2.29-2 [655 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon0 amd64 1.0.3-2 [101 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.0.3-2 [16.6 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5gui5 amd64 5.15.2+dfsg-2 [3319 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5positioning5 amd64 5.15.2+dfsg-2 [206 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common-data amd64 0.8-3 [126 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common3 amd64 0.8-3 [58.3 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-client3 amd64 0.8-3 [61.7 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libcups2 amd64 2.3.3op1-4 [349 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5widgets5 amd64 5.15.2+dfsg-2 [2346 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5printsupport5 amd64 5.15.2+dfsg-2 [221 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qml5 amd64 5.15.2+dfsg-2 [1318 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qmlmodels5 amd64 5.15.2+dfsg-2 [193 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quick5 amd64 5.15.2+dfsg-2 [1557 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sensors5 amd64 5.15.2-2 [112 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webchannel5 amd64 5.15.2-2 [58.0 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.0-1 [796 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libwoff1 amd64 1.0.2-1+b1 [42.4 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libxslt1.1 amd64 1.1.34-4 [239 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha4-10 [11.7 MB] Get:137 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.2.1-1 [201 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.2.1-1 [46.3 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.17-1 [111 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.31-6 [2412 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main mipsel libgpg-error0 mipsel 1.38-2 [74.9 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main mipsel libgcrypt20 mipsel 1.8.7-2 [542 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main mipsel liblz4-1 mipsel 1.9.3-1 [58.5 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main mipsel liblzma5 mipsel 5.2.4-1+b1 [153 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main mipsel libzstd1 mipsel 1.4.5+dfsg-4 [308 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main mipsel libsystemd0 mipsel 247.2-2 [335 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-19 [198 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-3 [174 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-3 [33.0 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-13 [313 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-1 [814 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-3 [509 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.35.1-4cross3 [2357 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-common all 1.2.6-3 [13.3 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc3 amd64 1.2.6-3 [83.4 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-6 [2343 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-1 [1741 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-1 [44.7 MB] Get:168 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:169 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:172 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu-base amd64 10.2.1-1cross1 [201 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mipsel-linux-gnu amd64 10.2.1-1cross1 [6985 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:10.2.0-1 [16.9 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.1-1cross1 [197 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.31-2cross1 [1212 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10.2.1-1cross1 [46.6 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10.2.1-1cross1 [91.1 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10.2.1-1cross1 [6648 B] Get:181 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mipsel-cross all 10.2.1-1cross1 [244 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu amd64 10.2.1-1cross1 [13.6 MB] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:10.2.0-1 [1456 B] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10.2.1-1cross1 [397 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.7.10-1cross1 [1237 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.31-2cross1 [2074 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mipsel-cross all 10.2.1-1cross1 [1749 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mipsel-linux-gnu amd64 10.2.1-1cross1 [7654 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:10.2.0-1 [1180 B] Get:190 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:204 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3 [188 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20201015-2 [173 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-3 [1311 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3 [1009 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.2.1-1 [6704 B] Get:217 http://debian.oregonstate.edu/debian unstable/main mipsel libavahi-common-data mipsel 0.8-3 [126 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main mipsel libavahi-common3 mipsel 0.8-3 [56.5 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main mipsel libdbus-1-3 mipsel 1.12.20-1 [193 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main mipsel libavahi-client3 mipsel 0.8-3 [57.4 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main mipsel libblkid1 mipsel 2.36.1-3 [187 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main mipsel libbrotli1 mipsel 1.0.9-2+b2 [282 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main mipsel libbsd0 mipsel 0.10.0-1 [122 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.9.15-1 [1231 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.17-1 [132 kB] Get:226 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.45.6-1 [71.4 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.18.3-4 [64.3 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.18.3-4 [118 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6.1-2 [14.9 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1i-1 [1190 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.18.3-4 [335 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.18.3-4 [149 kB] Get:233 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc3 mipsel 1.2.6-3 [73.7 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:235 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc-dev mipsel 1.2.6-3 [197 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.31-6 [2010 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-11 amd64 1:11.0.1~+rc2-1 [5510 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main mipsel libgmp10 mipsel 2:6.2.1+dfsg-1 [537 kB] Get:240 http://debian.oregonstate.edu/debian unstable/main mipsel libnettle8 mipsel 3.6-2 [260 kB] Get:241 http://debian.oregonstate.edu/debian unstable/main mipsel libhogweed6 mipsel 3.6-2 [305 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main mipsel libunistring2 mipsel 0.9.10-4 [369 kB] Get:243 http://debian.oregonstate.edu/debian unstable/main mipsel libidn2-0 mipsel 2.3.0-4 [84.4 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main mipsel libffi7 mipsel 3.3-5 [20.2 kB] Get:245 http://debian.oregonstate.edu/debian unstable/main mipsel libp11-kit0 mipsel 0.23.22-1 [284 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main mipsel libtasn1-6 mipsel 4.16.0-2 [53.4 kB] Get:247 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls30 mipsel 3.7.0-3 [1196 kB] Get:248 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main mipsel libcups2 mipsel 2.3.3op1-4 [318 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.2.1-1 [436 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main mipsel libdouble-conversion3 mipsel 3.1.5-6.1 [42.4 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main mipsel libdrm2 mipsel 2.4.103-2 [38.4 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main mipsel libdrm-amdgpu1 mipsel 2.4.103-2 [29.0 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main mipsel libdrm-nouveau2 mipsel 2.4.103-2 [26.9 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main mipsel libdrm-radeon1 mipsel 2.4.103-2 [29.9 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main mipsel libtinfo6 mipsel 6.2+20201114-1 [331 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main mipsel libedit2 mipsel 3.1-20191231-2+b1 [87.8 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main mipsel libglvnd0 mipsel 1.3.2-1 [47.5 kB] Get:259 http://debian.oregonstate.edu/debian unstable/main mipsel libexpat1 mipsel 2.2.10-1 [91.8 kB] Get:260 http://debian.oregonstate.edu/debian unstable/main mipsel libwayland-server0 mipsel 1.18.0-2~exp1.1 [30.9 kB] Get:261 http://debian.oregonstate.edu/debian unstable/main mipsel libgbm1 mipsel 20.2.6-1 [72.0 kB] Get:262 http://debian.oregonstate.edu/debian unstable/main mipsel libglapi-mesa mipsel 20.2.6-1 [74.5 kB] Get:263 http://debian.oregonstate.edu/debian unstable/main mipsel libwayland-client0 mipsel 1.18.0-2~exp1.1 [24.3 kB] Get:264 http://debian.oregonstate.edu/debian unstable/main mipsel libx11-xcb1 mipsel 2:1.6.12-1 [203 kB] Get:265 http://debian.oregonstate.edu/debian unstable/main mipsel libxau6 mipsel 1:1.0.8-1+b2 [19.6 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main mipsel libxdmcp6 mipsel 1:1.1.2-3 [25.7 kB] Get:267 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb1 mipsel 1.14-2 [132 kB] Get:268 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-dri2-0 mipsel 1.14-2 [102 kB] Get:269 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-dri3-0 mipsel 1.14-2 [102 kB] Get:270 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-present0 mipsel 1.14-2 [101 kB] Get:271 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-sync1 mipsel 1.14-2 [104 kB] Get:272 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-xfixes0 mipsel 1.14-2 [104 kB] Get:273 http://debian.oregonstate.edu/debian unstable/main mipsel libxshmfence1 mipsel 1.3-1 [8800 B] Get:274 http://debian.oregonstate.edu/debian unstable/main mipsel libegl-mesa0 mipsel 20.2.6-1 [132 kB] Get:275 http://debian.oregonstate.edu/debian unstable/main mipsel libegl1 mipsel 1.3.2-1 [32.1 kB] Get:276 http://debian.oregonstate.edu/debian unstable/main mipsel libx11-6 mipsel 2:1.6.12-1 [722 kB] Get:277 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-glx0 mipsel 1.14-2 [113 kB] Get:278 http://debian.oregonstate.edu/debian unstable/main mipsel libxdamage1 mipsel 1:1.1.5-2 [15.4 kB] Get:279 http://debian.oregonstate.edu/debian unstable/main mipsel libxext6 mipsel 2:1.3.3-1.1 [48.9 kB] Get:280 http://debian.oregonstate.edu/debian unstable/main mipsel libxfixes3 mipsel 1:5.0.3-2 [21.1 kB] Get:281 http://debian.oregonstate.edu/debian unstable/main mipsel libxxf86vm1 mipsel 1:1.1.4-1+b2 [20.3 kB] Get:282 http://debian.oregonstate.edu/debian unstable/main mipsel libelf1 mipsel 0.182-1 [167 kB] Get:283 http://debian.oregonstate.edu/debian unstable/main mipsel libz3-4 mipsel 4.8.9-1 [5862 kB] Get:284 http://debian.oregonstate.edu/debian unstable/main mipsel libllvm11 mipsel 1:11.0.1~+rc2-1 [15.0 MB] Get:285 http://debian.oregonstate.edu/debian unstable/main mipsel libsensors5 mipsel 1:3.6.0-2 [51.2 kB] Get:286 http://debian.oregonstate.edu/debian unstable/main mipsel libgl1-mesa-dri mipsel 20.2.6-1 [5410 kB] Get:287 http://debian.oregonstate.edu/debian unstable/main mipsel libglx-mesa0 mipsel 20.2.6-1 [169 kB] Get:288 http://debian.oregonstate.edu/debian unstable/main mipsel libglx0 mipsel 1.3.2-1 [27.4 kB] Get:289 http://debian.oregonstate.edu/debian unstable/main mipsel libgl1 mipsel 1.3.2-1 [84.5 kB] Get:290 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:291 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get:292 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2020.1-1 [3404 B] Get:293 http://debian.oregonstate.edu/debian unstable/main mipsel libxau-dev mipsel 1:1.0.8-1+b2 [23.5 kB] Get:294 http://debian.oregonstate.edu/debian unstable/main mipsel libxdmcp-dev mipsel 1:1.1.2-3 [42.4 kB] Get:295 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:296 http://debian.oregonstate.edu/debian unstable/main mipsel libpthread-stubs0-dev mipsel 0.4-1 [5340 B] Get:297 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb1-dev mipsel 1.14-2 [178 kB] Get:298 http://debian.oregonstate.edu/debian unstable/main mipsel libx11-dev mipsel 2:1.6.12-1 [840 kB] Get:299 http://debian.oregonstate.edu/debian unstable/main mipsel libglx-dev mipsel 1.3.2-1 [16.3 kB] Get:300 http://debian.oregonstate.edu/debian unstable/main mipsel libgl-dev mipsel 1.3.2-1 [100 kB] Get:301 http://debian.oregonstate.edu/debian unstable/main mipsel libegl-dev mipsel 1.3.2-1 [19.5 kB] Get:302 http://debian.oregonstate.edu/debian unstable/main mipsel libevdev2 mipsel 1.10.0+dfsg-1 [28.7 kB] Get:303 http://debian.oregonstate.edu/debian unstable/main mipsel libpng16-16 mipsel 1.6.37-3 [285 kB] Get:304 http://debian.oregonstate.edu/debian unstable/main mipsel libfreetype6 mipsel 2.10.4+dfsg-1 [387 kB] Get:305 http://debian.oregonstate.edu/debian unstable/main mipsel libuuid1 mipsel 2.36.1-3 [83.7 kB] Get:306 http://debian.oregonstate.edu/debian unstable/main mipsel libfontconfig1 mipsel 2.13.1-4.2 [343 kB] Get:307 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.2.1-1 [92.9 kB] Get:308 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-19 [222 kB] Get:309 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre2-8-0 mipsel 10.36-2 [157 kB] Get:310 http://debian.oregonstate.edu/debian unstable/main mipsel libselinux1 mipsel 3.1-2+b2 [79.2 kB] Get:311 http://debian.oregonstate.edu/debian unstable/main mipsel libmount1 mipsel 2.36.1-3 [189 kB] Get:312 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre3 mipsel 2:8.39-13 [335 kB] Get:313 http://debian.oregonstate.edu/debian unstable/main mipsel libglib2.0-0 mipsel 2.66.4-1 [1175 kB] Get:314 http://debian.oregonstate.edu/debian unstable/main mipsel libglu1-mesa mipsel 9.0.1-1 [171 kB] Get:315 http://debian.oregonstate.edu/debian unstable/main mipsel libglu1-mesa-dev mipsel 9.0.1-1 [226 kB] Get:316 http://debian.oregonstate.edu/debian unstable/main mipsel libgraphite2-3 mipsel 1.3.14-1 [76.9 kB] Get:317 http://debian.oregonstate.edu/debian unstable/main mipsel libudev1 mipsel 247.2-2 [159 kB] Get:318 http://debian.oregonstate.edu/debian unstable/main mipsel libgudev-1.0-0 mipsel 234-1 [12.3 kB] Get:319 http://debian.oregonstate.edu/debian unstable/main mipsel libharfbuzz0b mipsel 2.6.7-1 [1444 kB] Get:320 http://debian.oregonstate.edu/debian unstable/main mipsel libice6 mipsel 2:1.0.10-1 [52.9 kB] Get:321 http://debian.oregonstate.edu/debian unstable/main mipsel libicu67 mipsel 67.1-5 [8508 kB] Get:322 http://debian.oregonstate.edu/debian unstable/main mipsel libmtdev1 mipsel 1.1.6-1 [22.6 kB] Get:323 http://debian.oregonstate.edu/debian unstable/main mipsel libwacom2 mipsel 1.7-1 [19.4 kB] Get:324 http://debian.oregonstate.edu/debian unstable/main mipsel libinput10 mipsel 1.16.4-3 [109 kB] Get:325 http://debian.oregonstate.edu/debian unstable/main mipsel libjpeg62-turbo mipsel 1:2.0.5-1.1 [136 kB] Get:326 http://debian.oregonstate.edu/debian unstable/main mipsel libmd4c0 mipsel 0.4.6-1 [41.6 kB] Get:327 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre2-16-0 mipsel 10.36-2 [144 kB] Get:328 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5core5a mipsel 5.15.2+dfsg-2 [1655 kB] Get:329 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5concurrent5 mipsel 5.15.2+dfsg-2 [70.5 kB] Get:330 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5dbus5 mipsel 5.15.2+dfsg-2 [206 kB] Get:331 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5xml5 amd64 5.15.2+dfsg-2 [147 kB] Get:332 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designer5 amd64 5.15.2-3 [2705 kB] Get:333 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designercomponents5 amd64 5.15.2-3 [715 kB] Get:334 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5network5 mipsel 5.15.2+dfsg-2 [576 kB] Get:335 http://debian.oregonstate.edu/debian unstable/main mipsel libsm6 mipsel 2:1.2.3-1 [33.2 kB] Get:336 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-icccm4 mipsel 0.4.1-1.1 [26.5 kB] Get:337 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-shm0 mipsel 1.14-2 [101 kB] Get:338 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-util1 mipsel 0.4.0-1+b1 [22.5 kB] Get:339 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-image0 mipsel 0.4.0-1+b3 [23.8 kB] Get:340 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-keysyms1 mipsel 0.4.0-1+b2 [16.2 kB] Get:341 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-randr0 mipsel 1.14-2 [110 kB] Get:342 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-render0 mipsel 1.14-2 [109 kB] Get:343 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-render-util0 mipsel 0.3.9-1+b1 [18.0 kB] Get:344 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-shape0 mipsel 1.14-2 [101 kB] Get:345 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-xinerama0 mipsel 1.14-2 [101 kB] Get:346 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-xinput0 mipsel 1.14-2 [121 kB] Get:347 http://debian.oregonstate.edu/debian unstable/main mipsel libxcb-xkb1 mipsel 1.14-2 [121 kB] Get:348 http://debian.oregonstate.edu/debian unstable/main mipsel libxkbcommon0 mipsel 1.0.3-2 [96.0 kB] Get:349 http://debian.oregonstate.edu/debian unstable/main mipsel libxkbcommon-x11-0 mipsel 1.0.3-2 [15.9 kB] Get:350 http://debian.oregonstate.edu/debian unstable/main mipsel libxrender1 mipsel 1:0.9.10-1 [31.2 kB] Get:351 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5gui5 mipsel 5.15.2+dfsg-2 [2890 kB] Get:352 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5 amd64 5.15.2+dfsg-2 [143 kB] Get:353 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5help5 amd64 5.15.2-3 [143 kB] Get:354 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5widgets5 mipsel 5.15.2+dfsg-2 [2111 kB] Get:355 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5printsupport5 mipsel 5.15.2+dfsg-2 [206 kB] Get:356 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.15.2+dfsg-2 [48.6 kB] Get:357 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5sql5 mipsel 5.15.2+dfsg-2 [133 kB] Get:358 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.15.2+dfsg-2 [83.3 kB] Get:359 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5test5 mipsel 5.15.2+dfsg-2 [163 kB] Get:360 http://debian.oregonstate.edu/debian unstable/main mipsel libqt5xml5 mipsel 5.15.2+dfsg-2 [139 kB] Get:361 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-19 [1721 kB] Get:362 http://debian.oregonstate.edu/debian unstable/main mipsel libvulkan1 mipsel 1.2.154.1-1 [83.6 kB] Get:363 http://debian.oregonstate.edu/debian unstable/main mipsel libvulkan-dev mipsel 1.2.154.1-1 [565 kB] Get:364 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2020.1-1 [3404 B] Get:365 http://debian.oregonstate.edu/debian unstable/main mipsel libxext-dev mipsel 2:1.3.3-1.1 [109 kB] Get:366 http://debian.oregonstate.edu/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:367 http://debian.oregonstate.edu/debian unstable/main amd64 qdoc-qt5 amd64 5.15.2-3 [562 kB] Get:368 http://debian.oregonstate.edu/debian unstable/main amd64 qhelpgenerator-qt5 amd64 5.15.2-3 [58.5 kB] Get:369 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-assistant amd64 5.15.2-3 [345 kB] Get:370 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.2+dfsg-2 [1041 kB] Get:371 http://debian.oregonstate.edu/debian unstable/main mipsel qt5-qmake mipsel 5.15.2+dfsg-2 [248 kB] Get:372 http://debian.oregonstate.edu/debian unstable/main amd64 qtattributionsscanner-qt5 amd64 5.15.2-3 [35.1 kB] Get:373 http://debian.oregonstate.edu/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.2+dfsg-2 [755 kB] Get:374 http://debian.oregonstate.edu/debian unstable/main mipsel qtbase5-dev mipsel 5.15.2+dfsg-2 [1149 kB] Get:375 http://debian.oregonstate.edu/debian unstable/main amd64 qttools5-dev-tools amd64 5.15.2-3 [970 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 288 MB in 14s (20.1 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10442 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-3_amd64.deb ... Unpacking bsdextrautils (2.36.1-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-6_all.deb ... Unpacking perl-modules-5.32 (5.32.0-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.0-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-6) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.0-6_amd64.deb ... Unpacking perl (5.32.0-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../009-libglib2.0-0_2.66.4-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.66.4-1) ... Selecting previously unselected package libcap2:amd64. Preparing to unpack .../010-libcap2_1%3a2.44-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../011-libelf1_0.182-1_amd64.deb ... Unpacking libelf1:amd64 (0.182-1) ... Selecting previously unselected package libdw1:amd64. Preparing to unpack .../012-libdw1_0.182-1_amd64.deb ... Unpacking libdw1:amd64 (0.182-1) ... Selecting previously unselected package libunwind8:amd64. Preparing to unpack .../013-libunwind8_1.3.2-2_amd64.deb ... Unpacking libunwind8:amd64 (1.3.2-2) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../014-libcap2-bin_1%3a2.44-1_amd64.deb ... Unpacking libcap2-bin (1:2.44-1) ... Selecting previously unselected package libgstreamer1.0-0:amd64. Preparing to unpack .../015-libgstreamer1.0-0_1.18.2-1_amd64.deb ... Unpacking libgstreamer1.0-0:amd64 (1.18.2-1) ... Selecting previously unselected package liborc-0.4-0:amd64. Preparing to unpack .../016-liborc-0.4-0_1%3a0.4.32-1_amd64.deb ... Unpacking liborc-0.4-0:amd64 (1:0.4.32-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../017-iso-codes_4.5.0-1_all.deb ... Unpacking iso-codes (4.5.0-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. Preparing to unpack .../018-libgstreamer-plugins-base1.0-0_1.18.2-1_amd64.deb ... Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.18.2-1) ... Selecting previously unselected package libhyphen0:amd64. Preparing to unpack .../019-libhyphen0_2.8.8-7_amd64.deb ... Unpacking libhyphen0:amd64 (2.8.8-7) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../020-libicu67_67.1-5_amd64.deb ... Unpacking libicu67:amd64 (67.1-5) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../021-libjpeg62-turbo_1%3a2.0.5-1.1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.5-1.1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../022-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../023-libxml2_2.9.10+dfsg-6.3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../024-shared-mime-info_2.0-1_amd64.deb ... Unpacking shared-mime-info (2.0-1) ... Selecting previously unselected package libdouble-conversion3:amd64. Preparing to unpack .../025-libdouble-conversion3_3.1.5-6.1_amd64.deb ... Unpacking libdouble-conversion3:amd64 (3.1.5-6.1) ... Selecting previously unselected package libpcre2-16-0:amd64. Preparing to unpack .../026-libpcre2-16-0_10.36-2_amd64.deb ... Unpacking libpcre2-16-0:amd64 (10.36-2) ... Selecting previously unselected package libqt5core5a:amd64. Preparing to unpack .../027-libqt5core5a_5.15.2+dfsg-2_amd64.deb ... Unpacking libqt5core5a:amd64 (5.15.2+dfsg-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../028-libexpat1_2.2.10-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../029-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../030-libfreetype6_2.10.4+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../031-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package ucf. Preparing to unpack .../032-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../033-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../034-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../035-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../036-fontconfig_2.13.1-4.2_amd64.deb ... Unpacking fontconfig (2.13.1-4.2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../037-libdrm-common_2.4.103-2_all.deb ... Unpacking libdrm-common (2.4.103-2) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../038-libdrm2_2.4.103-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.103-2) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../039-libglvnd0_1.3.2-1_amd64.deb ... Unpacking libglvnd0:amd64 (1.3.2-1) ... Selecting previously unselected package libwayland-server0:amd64. Preparing to unpack .../040-libwayland-server0_1.18.0-2~exp1.1_amd64.deb ... Unpacking libwayland-server0:amd64 (1.18.0-2~exp1.1) ... Selecting previously unselected package libgbm1:amd64. Preparing to unpack .../041-libgbm1_20.2.6-1_amd64.deb ... Unpacking libgbm1:amd64 (20.2.6-1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../042-libglapi-mesa_20.2.6-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (20.2.6-1) ... Selecting previously unselected package libwayland-client0:amd64. Preparing to unpack .../043-libwayland-client0_1.18.0-2~exp1.1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../044-libx11-xcb1_2%3a1.6.12-1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.12-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../045-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../046-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../047-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../048-libxcb1_1.14-2_amd64.deb ... Unpacking libxcb1:amd64 (1.14-2) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../049-libxcb-dri2-0_1.14-2_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.14-2) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../050-libxcb-dri3-0_1.14-2_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.14-2) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../051-libxcb-present0_1.14-2_amd64.deb ... Unpacking libxcb-present0:amd64 (1.14-2) ... Selecting previously unselected package libxcb-sync1:amd64. 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Setting up libxrender1:mipsel (1:0.9.10-1) ... Setting up libstdc++6-mipsel-cross (10.2.1-1cross1) ... Setting up libgbm1:amd64 (20.2.6-1) ... Setting up libgbm1:mipsel (20.2.6-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:mipsel (2.66.4-1) ... /var/lib/dpkg/info/libglib2.0-0:mipsel.postinst: 62: /usr/lib/mipsel-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:mipsel.postinst: 65: /usr/lib/mipsel-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.103-2) ... Setting up libdrm-radeon1:mipsel (2.4.103-2) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up qdoc-qt5 (5.15.2-3) ... Setting up libdebhelper-perl (13.3) ... Setting up libqt5positioning5:amd64 (5.15.2+dfsg-2) ... Setting up libdrm-intel1:amd64 (2.4.103-2) ... Setting up libgl1-mesa-dri:amd64 (20.2.6-1) ... Setting up libgl1-mesa-dri:mipsel (20.2.6-1) ... Setting up libx11-dev:mipsel (2:1.6.12-1) ... 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Setting up libqt5test5:mipsel (5.15.2+dfsg-2) ... Setting up libqt5concurrent5:mipsel (5.15.2+dfsg-2) ... Setting up libgudev-1.0-0:mipsel (234-1) ... Setting up g++-10-mipsel-linux-gnu (10.2.1-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libinput10:amd64 (1.16.4-3) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libqt5qmlmodels5:amd64 (5.15.2+dfsg-2) ... Setting up libglx-mesa0:amd64 (20.2.6-1) ... Setting up libglx-mesa0:mipsel (20.2.6-1) ... Setting up libqt5sql5-sqlite:amd64 (5.15.2+dfsg-2) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up libglx0:mipsel (1.3.2-1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libqt5network5:mipsel (5.15.2+dfsg-2) ... Setting up libqt5sql5:mipsel (5.15.2+dfsg-2) ... Setting up g++-mipsel-linux-gnu (4:10.2.0-1) ... Setting up libqt5xml5:mipsel (5.15.2+dfsg-2) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up libgl1:mipsel (1.3.2-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:amd64 (2.31-6) ... Setting up libc6-dev:mipsel (2.31-6) ... Setting up libglx-dev:mipsel (1.3.2-1) ... Setting up libglu1-mesa:mipsel (9.0.1-1) ... Setting up libwacom2:mipsel (1.7-1) ... Setting up libgl-dev:mipsel (1.3.2-1) ... Setting up libinput10:mipsel (1.16.4-3) ... Setting up libstdc++-10-dev:amd64 (10.2.1-1) ... Setting up g++-10 (10.2.1-1) ... Setting up libstdc++-9-dev:mipsel (9.3.0-19) ... Setting up libegl-dev:mipsel (1.3.2-1) ... Setting up libtool (2.4.6-14) ... Setting up libqt5gui5:amd64 (5.15.2+dfsg-2) ... Setting up libqt5gui5:mipsel (5.15.2+dfsg-2) ... Setting up libqt5widgets5:amd64 (5.15.2+dfsg-2) ... Setting up libqt5widgets5:mipsel (5.15.2+dfsg-2) ... Setting up libqt5help5:amd64 (5.15.2-3) ... Setting up libqt5printsupport5:amd64 (5.15.2+dfsg-2) ... Setting up libqt5printsupport5:mipsel (5.15.2+dfsg-2) ... Setting up libglu1-mesa-dev:mipsel (9.0.1-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up qtbase5-dev:mipsel (5.15.2+dfsg-2) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.8) ... Setting up libqt5quick5:amd64 (5.15.2+dfsg-2) ... Setting up libqt5designer5:amd64 (5.15.2-3) ... Setting up qhelpgenerator-qt5 (5.15.2-3) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha4-10) ... Setting up libqt5designercomponents5:amd64 (5.15.2-3) ... Setting up libqt5quickwidgets5:amd64 (5.15.2+dfsg-2) ... Setting up qt5-assistant (5.15.2-3) ... Setting up qttools5-dev-tools (5.15.2-3) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.3) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.31-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-6 dpkg-dev_1.20.5 g++-10_10.2.1-1 gcc-10_10.2.1-1 libc6-dev_2.31-6 libstdc++-10-dev_10.2.1-1 libstdc++-10-dev-mipsel-cross_10.2.1-1cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.1-1 libstdc++6-mipsel-cross_10.2.1-1cross1 linux-libc-dev_5.9.15-1 Package versions: adduser_3.118 apt_2.1.14 autoconf_2.69-13 automake_1:1.16.3-1 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11 base-passwd_3.5.48 bash_5.1-1 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qtattributionsscanner-qt5_5.15.2-3 qtbase5-dev_5.15.2+dfsg-2 qtbase5-dev-tools_5.15.2+dfsg-2 qtchooser_66-2 qttools5-dev-tools_5.15.2-3 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 shared-mime-info_2.0-1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1 tzdata_2020e-1 ucf_3.0043 util-linux_2.36.1-3 x11-common_1:7.7+21 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xkb-data_2.29-2 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clustalx Binary: clustalx Architecture: any Version: 2.1+lgpl-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.clustal.org/clustal2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/clustalx Vcs-Git: https://salsa.debian.org/med-team/clustalx.git Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Package-List: clustalx deb science optional arch=any Checksums-Sha1: 63196a4e113a22e5e575f223d76b7406f4f70795 341649 clustalx_2.1+lgpl.orig.tar.gz b7b02b1250b121b5162e6aa0e43a931c1518401e 15224 clustalx_2.1+lgpl-9.debian.tar.xz Checksums-Sha256: e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 341649 clustalx_2.1+lgpl.orig.tar.gz a72891b756770c26939b8dc96afd800dd2156057a47caa5f4085b53d362e8011 15224 clustalx_2.1+lgpl-9.debian.tar.xz Files: 5b1f2f1cc8e939411ab0f934cafa072a 341649 clustalx_2.1+lgpl.orig.tar.gz 6a04d1877358fa582cf4897c5296c45c 15224 clustalx_2.1+lgpl-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/KtjoRHHRpbGxlQGRl 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F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-9.dsc dpkg-source: info: extracting clustalx in /<> dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-f6a8f4e8-e729-4cee-9a81-23a15417420d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f moc_* dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure mipsel-linux-gnu-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] 48 | void AlignmentParameters::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 588 | for(i = 0; i < len && i < gapMask->size(); i++) | ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 645 | for (i = 0; i < len && i < _secStructMask->size();i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 652 | for(i = 0; i < len && i < ssMask.size(); i++) | ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] 781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) | ~~~~~~~~~~~~~~~^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] 170 | bool blackAndWhite; | ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] 161 | std::vector* selectedColoredRes; | ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] 65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) | ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 225 | for(unsigned int j = 0; j < lengthLongestSeq; j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 235 | if(code >= 0 && code < conservationPixmaps->size()) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 268 | if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 280 | if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) | ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] 215 | int codeForSpace = clustalw::userParameters->resIndex( | ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 333 | if(i < secStructPixmaps->size() && i < secStructInfo.size()) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:344:51: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 344 | fontMetrics.width(secStructInfo[i])/2, | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 569 | if(selectedRes >= selectedColoredRes->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 689 | for(int j = 1; j <= strongGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 693 | for(int j = 1; j <= weakGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 700 | if((i + _fRes - 1 < (*alignment)[j].size()) && | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 701 | (i + _fRes - 1 < (*alignment)[_fSeq].size())) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 725 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 737 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 760 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 771 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 878 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 927 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1039 | for(int j = 0; j < aminoAcid.size(); j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:1051:61: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1051 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1079:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1079 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1089:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1089 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1099:57: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1099 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1118:42: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1118 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from AlignOutputFileNames.cpp:16: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from BootstrapTreeDialog.cpp:8: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] 74 | // tr("colorrules not found in the parameter file, using\ | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 85 | QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 160 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] 174 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] 157 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] 158 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 197 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] 211 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] 194 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] 195 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 229 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 238 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 251 | if(colorNum > 0 && colorNum - 1 < colorPar.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void ColumnScoreParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function ‘std::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 147 | catch(ifstream::failure e) | ^ HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] 61 | int i, number, nlines; | ^~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 180 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 198 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:208:73: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 208 | (fontMetrics.width(QString::number(rulerNum))) / 2; | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qlabel.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ HistogramWidget.cpp:241:80: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 241 | (fontMetrics.width(QString::number(0))) / 2, yPos, boxWidth, | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qlabel.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void LowScoringSegParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] 198 | void MainWindow::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] 1454 | void MainWindow::writeViewer1AsPostscript(int type) | ~~~~^~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] 74 | void PairwiseParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(res.isLetter() && resNumber.size() > i - data->firstSeq) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 307 | if(res.isLetter() && resNumber.size() > seq) | ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 421 | if(res.isLetter() && resNumber.size() > i) | ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] 55 | int err; | ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] 73 | int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] 74 | int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 587 | if(data->nameHeader.size() > ix) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 730 | for(i = fr; i <= lr && i < ruler.length(); i++) | ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 789 | for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] 781 | int psX, psY, curveBottom; | ^~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] 375 | QRect redrawRect = event->rect(); | ^~~~~~~~~~ SeqNameWidget.cpp: In member function ‘int SeqNameWidget::setMaxNameLength()’: SeqNameWidget.cpp:443:65: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 443 | int length = fontMetrics.width(QString(name.c_str())); | ^ In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SeqNameWidget.cpp:58: /usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from TreeOutputFileNames.cpp:7: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 162 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 837 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] 1715 | SeqArray::iterator posToAddTo = sectionToRealign.begin(); | ^~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 512 | bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 535 | string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 673 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 868 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1027 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1156 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1445 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1560 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2095 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2102 | catch(exception e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’: clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2351 | catch(VectorOutOfRange e) | ^ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 155 | auto_ptr fileParser; // Means we dont need to delete it! | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 426 | void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)’: clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 555 | catch(exception ex) | ^~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 34 | vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 199 | Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 444 | void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] 446 | int &structPenalties, int length) | ~~~~^~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 240 | void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function ‘std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds] 106 | delim[1] = 0; | ~~~~~~~^ clustalW/general/ClustalWResources.cpp:104:10: note: while referencing ‘delim’ 104 | char delim[1]; | ^~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] 33 | UserParameters::UserParameters(bool log) | ~~~~~^~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 251 | int n; | ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] 519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 221 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’: clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 41 | catch(bad_alloc) | ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] 520 | clustalObj->getHelp('C'); | ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here 521 | case 'Q': | ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1190 | system(lin1.c_str()); | ~~~~~~^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 170 | int count; | ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | tmpnam (buffer); | ~~~~~~~^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] 340 | int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] 359 | string phylipName) | ~~~~~~~^~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1657 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1717 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1103 | return (maxRes); | ^ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 278 | auto_ptr Tree::createSets(int firstSeq, int lastSeq) | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 280 | auto_ptr progAlignSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 31 | auto_ptr | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 103 | auto_ptr | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 195 | auto_ptr | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 200 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 208 | auto_ptr | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 214 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 439 | auto_ptr | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 445 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 485 | auto_ptr | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 490 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 503 | auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 506 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 17 | auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 21 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 27 | auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/bits/locale_conv.h:41, from /usr/mipsel-linux-gnu/include/c++/10/locale:43, from /usr/mipsel-linux-gnu/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -dM -E -o moc_predefs.h /usr/lib/mipsel-linux-gnu/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:10: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_AlignOutputFileNames.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:10: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_BootstrapTreeDialog.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:10: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_TreeOutputFileNames.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/10 -I/usr/mipsel-linux-gnu/include/c++/10/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/10/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/10/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp mipsel-linux-gnu-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:10: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/c++/10/memory:83, from moc_WritePostscriptFile.cpp:9: /usr/mipsel-linux-gnu/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o /usr/lib/mipsel-linux-gnu/libQt5Widgets.so /usr/lib/mipsel-linux-gnu/libQt5Gui.so /usr/lib/mipsel-linux-gnu/libQt5Xml.so /usr/lib/mipsel-linux-gnu/libQt5Core.so -lGL -lpthread -latomic /usr/lib/gcc-cross/mipsel-linux-gnu/10/../../../../mipsel-linux-gnu/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-9_mipsel.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-9_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../clustalx_2.1+lgpl-9_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-24T06:32:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-9_mipsel.changes: ----------------------------------- Format: 1.8 Date: Fri, 04 Dec 2020 22:57:37 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 2.1+lgpl-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.1+lgpl-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) * No quotet entry in mailcap Checksums-Sha1: 50937a0683b6860b4ed93c24b1b1e97300e4c8a7 7452048 clustalx-dbgsym_2.1+lgpl-9_mipsel.deb 7ea9246e7d6b37e91535db6ab278863f42be5b93 9523 clustalx_2.1+lgpl-9_mipsel.buildinfo 041c481232571a9c38c2f5e8d1e65452450ab873 396904 clustalx_2.1+lgpl-9_mipsel.deb Checksums-Sha256: cb3a367e18abf7d7b9187601e68177fd81f3edc3b2a0d60c358eb1bea206648d 7452048 clustalx-dbgsym_2.1+lgpl-9_mipsel.deb 33ab60c7beba716c5cccf18a7ac2d3d764aa7fee24bcd937721d4036b4368b53 9523 clustalx_2.1+lgpl-9_mipsel.buildinfo 8fcfd9444b8de17ae50fce811f4f7392f7f66e1f3b117a8ac7bd4f0b3a73b347 396904 clustalx_2.1+lgpl-9_mipsel.deb Files: f1c407dac60cb7adaede0ed5157c6b5f 7452048 debug optional clustalx-dbgsym_2.1+lgpl-9_mipsel.deb 8bf7a6b2f1bbabdd85292eb82d8cecd8 9523 science optional clustalx_2.1+lgpl-9_mipsel.buildinfo adfa3366c948b5cde3d29a621e265ce2 396904 science optional clustalx_2.1+lgpl-9_mipsel.deb 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(= 2.69-13), automake (= 1:1.16.3-1), autopoint (= 0.21-3), autotools-dev (= 20180224.1+nmu1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1-1), binutils (= 2.35.1-6), binutils-common (= 2.35.1-6), binutils-x86-64-linux-gnu (= 2.35.1-6), bsdextrautils (= 2.36.1-3), bsdutils (= 1:2.36.1-3), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.1-1), dash (= 0.5.11+git20200708+dd9ef66-5), debconf (= 1.5.74), debhelper (= 13.3), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), fontconfig (= 2.13.1-4.2), fontconfig-config (= 2.13.1-4.2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.1-1), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.1-1), gcc-10-base (= 10.2.1-1), gettext (= 0.21-3), gettext-base (= 0.21-3), grep (= 3.6-1), groff-base (= 1.22.4-5), 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(= 13.3), libdouble-conversion3 (= 3.1.5-6.1), libdpkg-perl (= 1.20.5), libdrm-amdgpu1 (= 2.4.103-2), libdrm-common (= 2.4.103-2), libdrm-intel1 (= 2.4.103-2), libdrm-nouveau2 (= 2.4.103-2), libdrm-radeon1 (= 2.4.103-2), libdrm2 (= 2.4.103-2), libdw1 (= 0.182-1), libedit2 (= 3.1-20191231-2+b1), libegl-dev (= 1.3.2-1), libegl-mesa0 (= 20.2.6-1), libegl1 (= 1.3.2-1), libelf1 (= 0.182-1), libevdev2 (= 1.10.0+dfsg-1), libexpat1 (= 2.2.10-1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libfontconfig1 (= 2.13.1-4.2), libfreetype6 (= 2.10.4+dfsg-1), libgbm1 (= 20.2.6-1), libgcc-10-dev (= 10.2.1-1), libgcc-s1 (= 10.2.1-1), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgl-dev (= 1.3.2-1), libgl1 (= 1.3.2-1), libgl1-mesa-dri (= 20.2.6-1), libglapi-mesa (= 20.2.6-1), libglib2.0-0 (= 2.66.4-1), libglu1-mesa (= 9.0.1-1), libglu1-mesa-dev (= 9.0.1-1), libglvnd0 (= 1.3.2-1), libglx-dev (= 1.3.2-1), libglx-mesa0 (= 20.2.6-1), libglx0 (= 1.3.2-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.0-3), libgomp1 (= 10.2.1-1), libgpg-error0 (= 1.38-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-4), libgstreamer-plugins-base1.0-0 (= 1.18.2-1), libgstreamer1.0-0 (= 1.18.2-1), libgudev-1.0-0 (= 234-1), libharfbuzz0b (= 2.6.7-1), libhogweed6 (= 3.6-2), libhyphen0 (= 2.8.8-7), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-5), libidn2-0 (= 2.3.0-4), libinput-bin (= 1.16.4-3), libinput10 (= 1.16.4-3), libisl23 (= 0.23-1), libitm1 (= 10.2.1-1), libjpeg62-turbo (= 1:2.0.5-1.1), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libllvm11 (= 1:11.0.1~+rc2-1), liblsan0 (= 10.2.1-1), liblz4-1 (= 1.9.3-1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmd4c0 (= 0.4.6-1), libmount1 (= 2.36.1-3), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libmtdev1 (= 1.1.6-1), libnettle8 (= 3.6-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), liborc-0.4-0 (= 1:0.4.32-1), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpciaccess0 (= 0.16-1), libpcre2-16-0 (= 10.36-2), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-6), libpipeline1 (= 1.5.3-1), libpng16-16 (= 1.6.37-3), libpthread-stubs0-dev (= 0.4-1), libqt5concurrent5 (= 5.15.2+dfsg-2), libqt5core5a (= 5.15.2+dfsg-2), libqt5dbus5 (= 5.15.2+dfsg-2), libqt5designer5 (= 5.15.2-3), libqt5designercomponents5 (= 5.15.2-3), libqt5gui5 (= 5.15.2+dfsg-2), libqt5help5 (= 5.15.2-3), libqt5network5 (= 5.15.2+dfsg-2), libqt5positioning5 (= 5.15.2+dfsg-2), libqt5printsupport5 (= 5.15.2+dfsg-2), libqt5qml5 (= 5.15.2+dfsg-2), libqt5qmlmodels5 (= 5.15.2+dfsg-2), libqt5quick5 (= 5.15.2+dfsg-2), libqt5quickwidgets5 (= 5.15.2+dfsg-2), libqt5sensors5 (= 5.15.2-2), libqt5sql5 (= 5.15.2+dfsg-2), libqt5sql5-sqlite (= 5.15.2+dfsg-2), libqt5test5 (= 5.15.2+dfsg-2), libqt5webchannel5 (= 5.15.2-2), libqt5webkit5 (= 5.212.0~alpha4-10), libqt5widgets5 (= 5.15.2+dfsg-2), libqt5xml5 (= 5.15.2+dfsg-2), libquadmath0 (= 10.2.1-1), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-2+b2), libsensors-config (= 1:3.6.0-2), libsensors5 (= 1:3.6.0-2), libsigsegv2 (= 2.12-3), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-3), libsqlite3-0 (= 3.34.0-1), libssl1.1 (= 1.1.1i-1), libstdc++-10-dev (= 10.2.1-1), libstdc++6 (= 10.2.1-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.2-2), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.1-1), libubsan1 (= 10.2.1-1), libuchardet0 (= 0.0.7-1), libudev1 (= 247.2-2), libunistring2 (= 0.9.10-4), libunwind8 (= 1.3.2-2), libuuid1 (= 2.36.1-3), libvulkan-dev (= 1.2.154.1-1), libvulkan1 (= 1.2.154.1-1), libwacom-common (= 1.7-1), libwacom2 (= 1.7-1), libwayland-client0 (= 1.18.0-2~exp1.1), libwayland-server0 (= 1.18.0-2~exp1.1), libwebp6 (= 0.6.1-2+b1), libwoff1 (= 1.0.2-1+b1), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libx11-dev (= 2:1.6.12-1), libx11-xcb1 (= 2:1.6.12-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-dri2-0 (= 1.14-2), libxcb-dri3-0 (= 1.14-2), libxcb-glx0 (= 1.14-2), libxcb-icccm4 (= 0.4.1-1.1), libxcb-image0 (= 0.4.0-1+b3), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present0 (= 1.14-2), libxcb-randr0 (= 1.14-2), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.14-2), libxcb-shape0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb-sync1 (= 1.14-2), libxcb-util1 (= 0.4.0-1+b1), libxcb-xfixes0 (= 1.14-2), libxcb-xinerama0 (= 1.14-2), libxcb-xinput0 (= 1.14-2), libxcb-xkb1 (= 1.14-2), libxcb1 (= 1.14-2), libxcb1-dev (= 1.14-2), libxdamage1 (= 1:1.1.5-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1.1), libxext6 (= 2:1.3.3-1.1), libxfixes3 (= 1:5.0.3-2), libxkbcommon-x11-0 (= 1.0.3-2), libxkbcommon0 (= 1.0.3-2), libxml2 (= 2.9.10+dfsg-6.3+b1), libxrender1 (= 1:0.9.10-1), libxshmfence1 (= 1.3-1), libxslt1.1 (= 1.1.34-4), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.9-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.9.15-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), patch (= 2.7.6-6), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), po-debconf (= 1.0.21), qdoc-qt5 (= 5.15.2-3), qhelpgenerator-qt5 (= 5.15.2-3), qt5-assistant (= 5.15.2-3), qt5-qmake (= 5.15.2+dfsg-2), qt5-qmake-bin (= 5.15.2+dfsg-2), qtattributionsscanner-qt5 (= 5.15.2-3), qtbase5-dev (= 5.15.2+dfsg-2), qtbase5-dev-tools (= 5.15.2+dfsg-2), qtchooser (= 66-2), qttools5-dev-tools (= 5.15.2-3), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), shared-mime-info (= 2.0-1), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), ucf (= 3.0043), util-linux (= 2.36.1-3), x11-common (= 1:7.7+21), x11proto-core-dev (= 2020.1-1), x11proto-dev (= 2020.1-1), x11proto-xext-dev (= 2020.1-1), xkb-data (= 2.29-2), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607119057" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-9_mipsel.deb ------------------------------------- new Debian package, version 2.0. size 7452048 bytes: control archive=540 bytes. 382 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-9 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 7521 Depends: clustalx (= 2.1+lgpl-9) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: e4f1c69a31425ea9248df255f2ea3bbafeb2e47f drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/e4/ -rw-r--r-- root/root 7690704 2020-12-04 21:57 ./usr/lib/debug/.build-id/e4/f1c69a31425ea9248df255f2ea3bbafeb2e47f.debug drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-9_mipsel.deb ------------------------------ new Debian package, version 2.0. size 396904 bytes: control archive=1456 bytes. 1549 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-9 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1556 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/bin/ -rwxr-xr-x root/root 1482496 2020-12-04 21:57 ./usr/bin/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/packages/ -rw-r--r-- root/root 112 2020-12-04 21:57 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/applications/ -rw-r--r-- root/root 876 2020-12-04 21:57 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2020-12-04 21:57 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 4670 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1860 2020-12-04 21:57 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2020-12-04 21:57 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2020-12-04 21:57 ./usr/share/mime/packages/clustalx.xml lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [550 B] Get:5 copy:/<>/apt_archive ./ Packages [639 B] Fetched 2152 B in 0s (88.7 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:mipsel t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 6773 kB of archives. After this operation, 20.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b4 [71.9 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:11 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0.82+repack-1+b1 [35.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6773 kB in 0s (29.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 28256 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package gpg. Preparing to unpack .../05-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libaliased-perl. 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Unpacking sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b4) ... Setting up libunicode-utf8-perl (0.62-1+b2) ... Setting up libmouse-perl (2.5.10-1+b1) ... Setting up libdata-messagepack-perl (1.00-4+b1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl (4.25-1+b1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-25) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up lzip (1.21-8) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b6) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1-1) ... Setting up libhtml-html5-entities-perl (0.004-1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.05-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libtype-tiny-perl (1.012000-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-6) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 126048 Build-Time: 308 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 65 Job: clustalx_2.1+lgpl-9 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 390 Source-Version: 2.1+lgpl-9 Space: 126048 Status: successful Version: 2.1+lgpl-9 -------------------------------------------------------------------------------- Finished at 2020-12-24T06:32:00Z Build needed 00:06:30, 126048k disk space