sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | clustalx 2.1+lgpl-8 (armhf) Wed, 01 May 2019 08:36:36 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-8 Source Version: 2.1+lgpl-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-ef186276-8aac-4d3a-a6f4-7c4d948fe44f' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8064 kB] Fetched 8064 kB in 2s (3813 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (dsc) [2079 B] Get:2 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (tar) [342 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main clustalx 2.1+lgpl-8 (diff) [14.9 kB] Fetched 359 kB in 0s (7794 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-FPKeyO/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-FPKeyO' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-AZwgUB/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-AZwgUB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AZwgUB/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-AZwgUB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AZwgUB/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-AZwgUB/apt_archive ./ Packages [451 B] Fetched 1771 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libmpx2-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabihf gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sbuild-build-depends-core-dummy:armhf sensible-utils ucf 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 152 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AZwgUB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.31.1-16 [2834 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabihf amd64 8.3.0-7cross1 [6545 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.28-9cross1 [1172 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:8.3.0-7cross1 [37.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 8.3.0-7cross1 [63.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 8.3.0-7cross1 [6564 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 8.3.0-7cross1 [301 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 8.3.0-7cross1 [329 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 8.3.0-7cross1 [103 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armhf-cross all 8.3.0-7cross1 [612 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf amd64 8.3.0-7cross1 [6973 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:8.3.0-1 [1456 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 4.19.28-2cross1 [1228 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.28-9cross1 [2150 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armhf-cross all 8.3.0-7cross1 [1556 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabihf amd64 8.3.0-7cross1 [7126 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:8.3.0-1 [1180 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (59.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11942 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Preparing to unpack .../31-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../32-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../33-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../34-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../35-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../36-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... 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Unpacking crossbuild-essential-armhf (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armhf. Preparing to unpack .../43-sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libc6-armhf-cross (2.28-9cross1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libatomic1-armhf-cross (8.3.0-7cross1) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libgcc1-armhf-cross (1:8.3.0-7cross1) ... Setting up gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-7cross1) ... Setting up linux-libc-dev-armhf-cross (4.19.28-2cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-16) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up cpp-8-arm-linux-gnueabihf (8.3.0-7cross1) ... Setting up libgomp1-armhf-cross (8.3.0-7cross1) ... Setting up libc6-dev-armhf-cross (2.28-9cross1) ... Setting up libstdc++6-armhf-cross (8.3.0-7cross1) ... Setting up libubsan1-armhf-cross (8.3.0-7cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up cpp-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (8.3.0-7cross1) ... Setting up libgcc-8-dev-armhf-cross (8.3.0-7cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-armhf-cross (8.3.0-7cross1) ... Setting up gcc-8-arm-linux-gnueabihf (8.3.0-7cross1) ... Setting up gcc-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up g++-8-arm-linux-gnueabihf (8.3.0-7cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-armhf (12.6) ... Setting up sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-AZwgUB/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-AZwgUB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AZwgUB/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-AZwgUB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AZwgUB/apt_archive ./ Sources [485 B] Get:5 copy:/<>/resolver-AZwgUB/apt_archive ./ Packages [570 B] Fetched 2018 B in 0s (113 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armhf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-AZwgUB/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armhf. (Reading database ... 14988 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools dpkg-deb: building package 'sbuild-build-depends-clustalx-dummy' in '/<>/resolver-AZwgUB/apt_archive/sbuild-build-depends-clustalx-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-clustalx-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-AZwgUB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AZwgUB/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-AZwgUB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AZwgUB/apt_archive ./ Sources [651 B] Get:5 copy:/<>/resolver-AZwgUB/apt_archive ./ Packages [732 B] Fetched 2346 B in 0s (139 kB/s) Reading package lists... Reading package lists... Install clustalx build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig fontconfig-config fonts-dejavu-core gcc-8-base:armhf gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:armhf libatomic1:armhf libavahi-client3 libavahi-client3:armhf libavahi-common-data libavahi-common-data:armhf libavahi-common3 libavahi-common3:armhf libblkid1:armhf libbrotli1 libbsd0 libbsd0:armhf libc6:armhf libc6-dev:armhf libcap2 libcap2-bin libclang1-7 libcom-err2:armhf libcroco3 libcups2 libcups2:armhf libdbus-1-3 libdbus-1-3:armhf libdouble-conversion1 libdouble-conversion1:armhf libdrm-amdgpu1 libdrm-amdgpu1:armhf libdrm-common libdrm-dev:armhf libdrm-etnaviv1:armhf libdrm-exynos1:armhf libdrm-freedreno1:armhf libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:armhf libdrm-omap1:armhf libdrm-radeon1 libdrm-radeon1:armhf libdrm-tegra0:armhf libdrm2 libdrm2:armhf libedit2 libedit2:armhf libegl-mesa0 libegl-mesa0:armhf libegl1 libegl1:armhf libegl1-mesa-dev:armhf libelf1 libelf1:armhf libevdev2 libevdev2:armhf libexpat1 libexpat1:armhf libffi6:armhf libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:armhf libfreetype6 libfreetype6:armhf libgbm1 libgbm1:armhf libgcc-8-dev:armhf libgcc1:armhf libgcrypt20:armhf libgl1 libgl1:armhf libgl1-mesa-dri libgl1-mesa-dri:armhf libglapi-mesa libglapi-mesa:armhf libgles1:armhf libgles2:armhf libgles2-mesa-dev:armhf libglib2.0-0 libglib2.0-0:armhf libglvnd-core-dev:armhf libglvnd-dev:armhf libglvnd0 libglvnd0:armhf libglx-mesa0 libglx-mesa0:armhf libglx0 libglx0:armhf libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgpg-error0:armhf libgraphite2-3 libgraphite2-3:armhf libgssapi-krb5-2 libgssapi-krb5-2:armhf libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:armhf libharfbuzz0b libharfbuzz0b:armhf libhogweed4:armhf libhyphen0 libice6 libice6:armhf libicu63:armhf libidn2-0:armhf libinput-bin libinput10 libinput10:armhf libjpeg62-turbo libjpeg62-turbo:armhf libk5crypto3 libk5crypto3:armhf libkeyutils1 libkeyutils1:armhf libkrb5-3 libkrb5-3:armhf libkrb5support0 libkrb5support0:armhf libllvm7 libllvm7:armhf liblz4-1:armhf liblzma5:armhf libmount1:armhf libmtdev1 libmtdev1:armhf libncurses6 libnettle6:armhf libopengl0:armhf liborc-0.4-0 libp11-kit0:armhf libpciaccess0 libpcre2-16-0 libpcre2-16-0:armhf libpcre3:armhf libpipeline1 libpng16-16 libpng16-16:armhf libpthread-stubs0-dev:armhf libqt5concurrent5:armhf libqt5core5a libqt5core5a:armhf libqt5dbus5 libqt5dbus5:armhf libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:armhf libqt5help5 libqt5network5 libqt5network5:armhf libqt5positioning5 libqt5printsupport5 libqt5printsupport5:armhf libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:armhf libqt5sql5-sqlite libqt5test5:armhf libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:armhf libqt5xml5 libqt5xml5:armhf libselinux1:armhf libsensors-config libsensors5 libsensors5:armhf libsigsegv2 libsm6 libsm6:armhf libsqlite3-0 libssl1.1 libssl1.1:armhf libstdc++-8-dev:armhf libstdc++6:armhf libsystemd0:armhf libtasn1-6:armhf libtinfo6:armhf libtool libubsan1:armhf libuchardet0 libudev1:armhf libunistring2:armhf libuuid1:armhf libvulkan-dev:armhf libvulkan1:armhf libwacom-common libwacom2 libwacom2:armhf libwayland-bin libwayland-client0 libwayland-client0:armhf libwayland-cursor0:armhf libwayland-dev:armhf libwayland-egl1:armhf libwayland-server0 libwayland-server0:armhf libwebp6 libwoff1 libx11-6 libx11-6:armhf libx11-data libx11-dev:armhf libx11-xcb-dev:armhf libx11-xcb1 libx11-xcb1:armhf libxau-dev:armhf libxau6 libxau6:armhf libxcb-dri2-0 libxcb-dri2-0:armhf libxcb-dri2-0-dev:armhf libxcb-dri3-0 libxcb-dri3-0:armhf libxcb-dri3-dev:armhf libxcb-glx0 libxcb-glx0:armhf libxcb-glx0-dev:armhf libxcb-icccm4 libxcb-icccm4:armhf libxcb-image0 libxcb-image0:armhf libxcb-keysyms1 libxcb-keysyms1:armhf libxcb-present-dev:armhf libxcb-present0 libxcb-present0:armhf libxcb-randr0 libxcb-randr0:armhf libxcb-randr0-dev:armhf libxcb-render-util0 libxcb-render-util0:armhf libxcb-render0 libxcb-render0:armhf libxcb-render0-dev:armhf libxcb-shape0 libxcb-shape0:armhf libxcb-shape0-dev:armhf libxcb-shm0 libxcb-shm0:armhf libxcb-sync-dev:armhf libxcb-sync1 libxcb-sync1:armhf libxcb-util0 libxcb-util0:armhf libxcb-xfixes0 libxcb-xfixes0:armhf libxcb-xfixes0-dev:armhf libxcb-xinerama0 libxcb-xinerama0:armhf libxcb-xkb1 libxcb-xkb1:armhf libxcb1 libxcb1:armhf libxcb1-dev:armhf libxdamage-dev:armhf libxdamage1 libxdamage1:armhf libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxfixes-dev:armhf libxfixes3 libxfixes3:armhf libxi6 libxi6:armhf libxkbcommon-x11-0 libxkbcommon-x11-0:armhf libxkbcommon0 libxkbcommon0:armhf libxrender1 libxrender1:armhf libxshmfence-dev:armhf libxshmfence1 libxshmfence1:armhf libxslt1.1 libxxf86vm-dev:armhf libxxf86vm1 libxxf86vm1:armhf linux-libc-dev:armhf lsb-base m4 man-db mesa-common-dev:armhf po-debconf qdoc-qt5 qt5-assistant qt5-qmake:armhf qt5-qmake-bin qtbase5-dev:armhf qtbase5-dev-tools qtchooser qttools5-dev-tools x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf cups-common cups-common:armhf rng-tools:armhf gnutls-bin:armhf krb5-doc krb5-user krb5-doc:armhf krb5-user:armhf libvisual-0.4-plugins gstreamer1.0-tools pciutils libthai0 libthai0:armhf qt5-image-formats-plugins qtwayland5 qt5-image-formats-plugins:armhf qtwayland5:armhf qt5-qmltooling-plugins lm-sensors lm-sensors:armhf libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libwayland-doc:armhf libx11-doc:armhf libxcb-doc:armhf libxext-doc:armhf m4-doc apparmor less www-browser libmail-box-perl qt5-doc default-libmysqlclient-dev:armhf firebird-dev:armhf libgl1-mesa-dev:armhf libpq-dev:armhf libsqlite3-dev:armhf unixodbc-dev:armhf Recommended packages: curl | wget | lynx libpam-cap dbus dbus:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libglib2.0-data:armhf shared-mime-info:armhf xdg-user-dirs:armhf libgpg-error-l10n:armhf gstreamer1.0-plugins-base krb5-locales krb5-locales:armhf libgpm2 qttranslations5-l10n qttranslations5-l10n:armhf libqt5svg5 qt5-gtk-platformtheme libqt5svg5:armhf qt5-gtk-platformtheme:armhf geoclue-2.0 libqt5sql5-sqlite:armhf | libqt5sql5-mysql:armhf | libqt5sql5-odbc:armhf | libqt5sql5-psql:armhf | libqt5sql5-tds:armhf | libqt5sql5-ibase:armhf libltdl-dev uuid-runtime:armhf libwacom-bin libwacom-bin:armhf libmail-sendmail-perl libqt5opengl5-dev:armhf The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig fontconfig-config fonts-dejavu-core gcc-8-base:armhf gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libasan5:armhf libatomic1:armhf libavahi-client3 libavahi-client3:armhf libavahi-common-data libavahi-common-data:armhf libavahi-common3 libavahi-common3:armhf libblkid1:armhf libbrotli1 libbsd0 libbsd0:armhf libc6:armhf libc6-dev:armhf libcap2 libcap2-bin libclang1-7 libcom-err2:armhf libcroco3 libcups2 libcups2:armhf libdbus-1-3 libdbus-1-3:armhf libdouble-conversion1 libdouble-conversion1:armhf libdrm-amdgpu1 libdrm-amdgpu1:armhf libdrm-common libdrm-dev:armhf libdrm-etnaviv1:armhf libdrm-exynos1:armhf libdrm-freedreno1:armhf libdrm-intel1 libdrm-nouveau2 libdrm-nouveau2:armhf libdrm-omap1:armhf libdrm-radeon1 libdrm-radeon1:armhf libdrm-tegra0:armhf libdrm2 libdrm2:armhf libedit2 libedit2:armhf libegl-mesa0 libegl-mesa0:armhf libegl1 libegl1:armhf libegl1-mesa-dev:armhf libelf1 libelf1:armhf libevdev2 libevdev2:armhf libexpat1 libexpat1:armhf libffi6:armhf libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:armhf libfreetype6 libfreetype6:armhf libgbm1 libgbm1:armhf libgcc-8-dev:armhf libgcc1:armhf libgcrypt20:armhf libgl1 libgl1:armhf libgl1-mesa-dri libgl1-mesa-dri:armhf libglapi-mesa libglapi-mesa:armhf libgles1:armhf libgles2:armhf libgles2-mesa-dev:armhf libglib2.0-0 libglib2.0-0:armhf libglvnd-core-dev:armhf libglvnd-dev:armhf libglvnd0 libglvnd0:armhf libglx-mesa0 libglx-mesa0:armhf libglx0 libglx0:armhf libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgpg-error0:armhf libgraphite2-3 libgraphite2-3:armhf libgssapi-krb5-2 libgssapi-krb5-2:armhf libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:armhf libharfbuzz0b libharfbuzz0b:armhf libhogweed4:armhf libhyphen0 libice6 libice6:armhf libicu63:armhf libidn2-0:armhf libinput-bin libinput10 libinput10:armhf libjpeg62-turbo libjpeg62-turbo:armhf libk5crypto3 libk5crypto3:armhf libkeyutils1 libkeyutils1:armhf libkrb5-3 libkrb5-3:armhf libkrb5support0 libkrb5support0:armhf libllvm7 libllvm7:armhf liblz4-1:armhf liblzma5:armhf libmount1:armhf libmtdev1 libmtdev1:armhf libncurses6 libnettle6:armhf libopengl0:armhf liborc-0.4-0 libp11-kit0:armhf libpciaccess0 libpcre2-16-0 libpcre2-16-0:armhf libpcre3:armhf libpipeline1 libpng16-16 libpng16-16:armhf libpthread-stubs0-dev:armhf libqt5concurrent5:armhf libqt5core5a libqt5core5a:armhf libqt5dbus5 libqt5dbus5:armhf libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5gui5:armhf libqt5help5 libqt5network5 libqt5network5:armhf libqt5positioning5 libqt5printsupport5 libqt5printsupport5:armhf libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:armhf libqt5sql5-sqlite libqt5test5:armhf libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5widgets5:armhf libqt5xml5 libqt5xml5:armhf libselinux1:armhf libsensors-config libsensors5 libsensors5:armhf libsigsegv2 libsm6 libsm6:armhf libsqlite3-0 libssl1.1 libssl1.1:armhf libstdc++-8-dev:armhf libstdc++6:armhf libsystemd0:armhf libtasn1-6:armhf libtinfo6:armhf libtool libubsan1:armhf libuchardet0 libudev1:armhf libunistring2:armhf libuuid1:armhf libvulkan-dev:armhf libvulkan1:armhf libwacom-common libwacom2 libwacom2:armhf libwayland-bin libwayland-client0 libwayland-client0:armhf libwayland-cursor0:armhf libwayland-dev:armhf libwayland-egl1:armhf libwayland-server0 libwayland-server0:armhf libwebp6 libwoff1 libx11-6 libx11-6:armhf libx11-data libx11-dev:armhf libx11-xcb-dev:armhf libx11-xcb1 libx11-xcb1:armhf libxau-dev:armhf libxau6 libxau6:armhf libxcb-dri2-0 libxcb-dri2-0:armhf libxcb-dri2-0-dev:armhf libxcb-dri3-0 libxcb-dri3-0:armhf libxcb-dri3-dev:armhf libxcb-glx0 libxcb-glx0:armhf libxcb-glx0-dev:armhf libxcb-icccm4 libxcb-icccm4:armhf libxcb-image0 libxcb-image0:armhf libxcb-keysyms1 libxcb-keysyms1:armhf libxcb-present-dev:armhf libxcb-present0 libxcb-present0:armhf libxcb-randr0 libxcb-randr0:armhf libxcb-randr0-dev:armhf libxcb-render-util0 libxcb-render-util0:armhf libxcb-render0 libxcb-render0:armhf libxcb-render0-dev:armhf libxcb-shape0 libxcb-shape0:armhf libxcb-shape0-dev:armhf libxcb-shm0 libxcb-shm0:armhf libxcb-sync-dev:armhf libxcb-sync1 libxcb-sync1:armhf libxcb-util0 libxcb-util0:armhf libxcb-xfixes0 libxcb-xfixes0:armhf libxcb-xfixes0-dev:armhf libxcb-xinerama0 libxcb-xinerama0:armhf libxcb-xkb1 libxcb-xkb1:armhf libxcb1 libxcb1:armhf libxcb1-dev:armhf libxdamage-dev:armhf libxdamage1 libxdamage1:armhf libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxfixes-dev:armhf libxfixes3 libxfixes3:armhf libxi6 libxi6:armhf libxkbcommon-x11-0 libxkbcommon-x11-0:armhf libxkbcommon0 libxkbcommon0:armhf libxrender1 libxrender1:armhf libxshmfence-dev:armhf libxshmfence1 libxshmfence1:armhf libxslt1.1 libxxf86vm-dev:armhf libxxf86vm1 libxxf86vm1:armhf linux-libc-dev:armhf lsb-base m4 man-db mesa-common-dev:armhf po-debconf qdoc-qt5 qt5-assistant qt5-qmake:armhf qt5-qmake-bin qtbase5-dev:armhf qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-clustalx-dummy:armhf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:armhf 0 upgraded, 330 newly installed, 0 to remove and 0 not upgraded. Need to get 149 MB of archives. After this operation, 798 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AZwgUB/apt_archive ./ sbuild-build-depends-clustalx-dummy 0.invalid.0 [888 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2 amd64 1:2.25-2 [17.6 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libcap2-bin amd64 1:2.25-2 [28.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.14.4-1 [2103 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liborc-0.4-0 amd64 1:0.4.28-3.1 [141 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 iso-codes all 4.2-1 [2713 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.14.4-1 [1936 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libdouble-conversion1 amd64 3.1.0-3 [39.4 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libpcre2-16-0 amd64 10.32-5 [202 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5core5a amd64 5.11.3+dfsg1-1 [1943 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.9.1-3 [379 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libgbm1 amd64 18.3.6-1 [67.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libglapi-mesa amd64 18.3.6-1 [65.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.7-1 [190 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libegl-mesa0 amd64 18.3.6-1 [135 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm7 amd64 1:7.0.1-8 [13.0 MB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1-mesa-dri amd64 18.3.6-1 [6684 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libglx-mesa0 amd64 18.3.6-1 [180 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019031300 [28.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libevdev2 amd64 1.6.0+dfsg-1 [31.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libmtdev1 amd64 1.1.5-1+b1 [22.3 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libgudev-1.0-0 amd64 232-2 [13.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom-common all 0.32-1 [39.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libwacom2 amd64 0.32-1 [18.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libinput-bin amd64 1.12.6-2 [16.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libinput10 amd64 1.12.6-2 [107 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libdbus-1-3 amd64 1.12.12-1 [212 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5dbus5 amd64 5.11.3+dfsg1-1 [230 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-2 [1530 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5network5 amd64 5.11.3+dfsg1-1 [671 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-randr0 amd64 1.13.1-2 [110 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xinerama0 amd64 1.13.1-2 [98.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-xkb1 amd64 1.13.1-2 [123 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 xkb-data all 2.26-2 [681 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon0 amd64 0.8.2-1 [123 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxkbcommon-x11-0 amd64 0.8.2-1 [39.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5gui5 amd64 5.11.3+dfsg1-1 [2843 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5positioning5 amd64 5.11.3+dfsg-2 [191 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common-data amd64 0.7-4+b1 [122 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-common3 amd64 0.7-4+b1 [54.6 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libavahi-client3 amd64 0.7-4+b1 [58.1 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-2 [65.6 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-2 [121 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-2 [368 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-2 [158 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libcups2 amd64 2.2.10-6 [324 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5widgets5 amd64 5.11.3+dfsg1-1 [2263 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5printsupport5 amd64 5.11.3+dfsg1-1 [216 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5qml5 amd64 5.11.3-4 [1222 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quick5 amd64 5.11.3-4 [1278 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sensors5 amd64 5.11.3-2 [116 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webchannel5 amd64 5.11.3-2 [48.8 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-2 [270 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libwoff1 amd64 1.0.2-1 [43.2 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libxslt1.1 amd64 1.1.32-2 [236 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha2-21 [11.7 MB] Get:123 http://debian.oregonstate.edu/debian unstable/main armhf gcc-8-base armhf 8.3.0-7 [191 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:8.3.0-7 [37.1 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.28-9 [2386 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armhf libgpg-error0 armhf 1.35-1 [62.6 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armhf libgcrypt20 armhf 1.8.4-5 [501 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armhf liblz4-1 armhf 1.8.3-1 [51.2 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armhf liblzma5 armhf 5.2.4-1 [145 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armhf libsystemd0 armhf 241-3 [305 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 8.3.0-7 [339 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 8.3.0-7 [336 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 8.3.0-7 [6740 B] Get:153 http://debian.oregonstate.edu/debian unstable/main armhf libavahi-common-data armhf 0.7-4+b1 [122 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main armhf libavahi-common3 armhf 0.7-4+b1 [51.1 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main armhf libdbus-1-3 armhf 1.12.12-1 [189 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main armhf libavahi-client3 armhf 0.7-4+b1 [54.5 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main armhf libuuid1 armhf 2.33.1-0.1 [77.5 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main armhf libblkid1 armhf 2.33.1-0.1 [179 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 4.19.28-2 [1140 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.28-9 [2151 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-7 amd64 1:7.0.1-8 [5993 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.45.0-1 [68.1 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main armhf libgmp10 armhf 2:6.1.2+dfsg-4 [205 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main armhf libnettle6 armhf 3.4.1-1 [227 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main armhf libhogweed4 armhf 3.4.1-1 [130 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main armhf libunistring2 armhf 0.9.10-1 [368 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main armhf libidn2-0 armhf 2.0.5-1 [73.7 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main armhf libffi6 armhf 3.2.1-9 [18.9 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main armhf libp11-kit0 armhf 0.23.15-2 [292 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main armhf libtasn1-6 armhf 4.13-3 [46.8 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls30 armhf 3.6.7-2 [1065 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.17-2 [62.2 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.17-2 [119 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1b-2 [1293 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.17-2 [322 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.17-2 [137 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1 [87.9 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main armhf libcups2 armhf 2.2.10-6 [291 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main armhf libdouble-conversion1 armhf 3.1.0-3 [39.0 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main armhf libdrm2 armhf 2.4.97-1 [35.7 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.97-1 [25.8 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-radeon1 armhf 2.4.97-1 [28.7 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-nouveau2 armhf 2.4.97-1 [24.2 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-omap1 armhf 2.4.97-1 [16.0 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-freedreno1 armhf 2.4.97-1 [26.5 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-exynos1 armhf 2.4.97-1 [19.0 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-tegra0 armhf 2.4.97-1 [15.3 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-etnaviv1 armhf 2.4.97-1 [19.7 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-dev armhf 2.4.97-1 [139 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main armhf libtinfo6 armhf 6.1+20181013-2 [312 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main armhf libedit2 armhf 3.1-20181209-1 [79.5 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main armhf libexpat1 armhf 2.2.6-1 [77.6 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-server0 armhf 1.16.0-1 [26.5 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main armhf libgbm1 armhf 18.3.6-1 [64.2 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main armhf libglapi-mesa armhf 18.3.6-1 [71.4 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-client0 armhf 1.16.0-1 [21.6 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main armhf libx11-xcb1 armhf 2:1.6.7-1 [190 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri2-0 armhf 1.13.1-2 [100 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri3-0 armhf 1.13.1-2 [100.0 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-present0 armhf 1.13.1-2 [99.0 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-sync1 armhf 1.13.1-2 [102 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xfixes0 armhf 1.13.1-2 [103 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get:209 http://debian.oregonstate.edu/debian unstable/main armhf libegl-mesa0 armhf 18.3.6-1 [117 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main armhf libx11-6 armhf 2:1.6.7-1 [698 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:214 http://debian.oregonstate.edu/debian unstable/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.5 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get:218 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1-dev armhf 1.13.1-2 [171 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main armhf libx11-dev armhf 2:1.6.7-1 [771 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main armhf mesa-common-dev armhf 18.3.6-1 [611 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main armhf libglvnd0 armhf 1.1.0-1 [49.1 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main armhf libglvnd-core-dev armhf 1.1.0-1 [13.2 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main armhf libegl1 armhf 1.1.0-1 [28.1 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main armhf libgles1 armhf 1.1.0-1 [13.4 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main armhf libgles2 armhf 1.1.0-1 [19.9 kB] Get:226 http://debian.oregonstate.edu/debian unstable/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-glx0 armhf 1.13.1-2 [114 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main armhf libxdamage1 armhf 1:1.1.4-3+b3 [14.2 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main armhf libelf1 armhf 0.176-1 [158 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main armhf libllvm7 armhf 1:7.0.1-8 [11.3 MB] Get:233 http://debian.oregonstate.edu/debian unstable/main armhf libsensors5 armhf 1:3.5.0-3 [49.7 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main armhf libgl1-mesa-dri armhf 18.3.6-1 [4103 kB] Get:235 http://debian.oregonstate.edu/debian unstable/main armhf libglx-mesa0 armhf 18.3.6-1 [162 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main armhf libglx0 armhf 1.1.0-1 [25.5 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main armhf libgl1 armhf 1.1.0-1 [105 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main armhf libopengl0 armhf 1.1.0-1 [37.7 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main armhf libglvnd-dev armhf 1.1.0-1 [5132 B] Get:240 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get:241 http://debian.oregonstate.edu/debian unstable/main armhf libxext-dev armhf 2:1.3.3-1+b2 [103 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get:243 http://debian.oregonstate.edu/debian unstable/main armhf libxxf86vm-dev armhf 1:1.1.4-1+b2 [25.1 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get:245 http://debian.oregonstate.edu/debian unstable/main armhf libxfixes-dev armhf 1:5.0.3-1 [22.7 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get:247 http://debian.oregonstate.edu/debian unstable/main armhf libxdamage-dev armhf 1:1.1.4-3+b3 [14.2 kB] Get:248 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-glx0-dev armhf 1.13.1-2 [121 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri2-0-dev armhf 1.13.1-2 [102 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri3-dev armhf 1.13.1-2 [101 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-randr0 armhf 1.13.1-2 [109 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-render0-dev armhf 1.13.1-2 [112 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-randr0-dev armhf 1.13.1-2 [114 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shape0 armhf 1.13.1-2 [99.3 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shape0-dev armhf 1.13.1-2 [101 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xfixes0-dev armhf 1.13.1-2 [106 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-sync-dev armhf 1.13.1-2 [104 kB] Get:259 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-present-dev armhf 1.13.1-2 [101 kB] Get:260 http://debian.oregonstate.edu/debian unstable/main armhf libxshmfence-dev armhf 1.3-1 [8216 B] Get:261 http://debian.oregonstate.edu/debian unstable/main armhf libx11-xcb-dev armhf 2:1.6.7-1 [192 kB] Get:262 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-cursor0 armhf 1.16.0-1 [13.0 kB] Get:263 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-egl1 armhf 1.16.0-1 [7980 B] Get:264 http://debian.oregonstate.edu/debian unstable/main amd64 libwayland-bin amd64 1.16.0-1 [22.6 kB] Get:265 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-dev armhf 1.16.0-1 [66.8 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main armhf libegl1-mesa-dev armhf 18.3.6-1 [61.6 kB] Get:267 http://debian.oregonstate.edu/debian unstable/main armhf libevdev2 armhf 1.6.0+dfsg-1 [25.3 kB] Get:268 http://debian.oregonstate.edu/debian unstable/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get:269 http://debian.oregonstate.edu/debian unstable/main armhf libfreetype6 armhf 2.9.1-3 [322 kB] Get:270 http://debian.oregonstate.edu/debian unstable/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get:271 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 8.3.0-7 [64.8 kB] Get:272 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 8.3.0-7 [103 kB] Get:273 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-8-dev armhf 8.3.0-7 [611 kB] Get:274 http://debian.oregonstate.edu/debian unstable/main armhf libgles2-mesa-dev armhf 18.3.6-1 [85.3 kB] Get:275 http://debian.oregonstate.edu/debian unstable/main armhf libpcre3 armhf 2:8.39-12 [317 kB] Get:276 http://debian.oregonstate.edu/debian unstable/main armhf libselinux1 armhf 2.8-1+b1 [77.4 kB] Get:277 http://debian.oregonstate.edu/debian unstable/main armhf libmount1 armhf 2.33.1-0.1 [191 kB] Get:278 http://debian.oregonstate.edu/debian unstable/main armhf libglib2.0-0 armhf 2.58.3-1 [1100 kB] Get:279 http://debian.oregonstate.edu/debian unstable/main armhf libgraphite2-3 armhf 1.3.13-7 [70.3 kB] Get:280 http://debian.oregonstate.edu/debian unstable/main armhf libudev1 armhf 241-3 [141 kB] Get:281 http://debian.oregonstate.edu/debian unstable/main armhf libgudev-1.0-0 armhf 232-2 [11.7 kB] Get:282 http://debian.oregonstate.edu/debian unstable/main armhf libharfbuzz0b armhf 2.3.1-1 [1151 kB] Get:283 http://debian.oregonstate.edu/debian unstable/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get:284 http://debian.oregonstate.edu/debian unstable/main armhf libicu63 armhf 63.1-6 [8000 kB] Get:285 http://debian.oregonstate.edu/debian unstable/main armhf libmtdev1 armhf 1.1.5-1+b1 [21.2 kB] Get:286 http://debian.oregonstate.edu/debian unstable/main armhf libwacom2 armhf 0.32-1 [16.1 kB] Get:287 http://debian.oregonstate.edu/debian unstable/main armhf libinput10 armhf 1.12.6-2 [92.2 kB] Get:288 http://debian.oregonstate.edu/debian unstable/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [112 kB] Get:289 http://debian.oregonstate.edu/debian unstable/main armhf libpcre2-16-0 armhf 10.32-5 [179 kB] Get:290 http://debian.oregonstate.edu/debian unstable/main armhf libqt5core5a armhf 5.11.3+dfsg1-1 [1683 kB] Get:291 http://debian.oregonstate.edu/debian unstable/main armhf libqt5concurrent5 armhf 5.11.3+dfsg1-1 [55.5 kB] Get:292 http://debian.oregonstate.edu/debian unstable/main armhf libqt5dbus5 armhf 5.11.3+dfsg1-1 [204 kB] Get:293 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5xml5 amd64 5.11.3+dfsg1-1 [127 kB] Get:294 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designer5 amd64 5.11.3-4 [2783 kB] Get:295 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5designercomponents5 amd64 5.11.3-4 [711 kB] Get:296 http://debian.oregonstate.edu/debian unstable/main armhf libqt5network5 armhf 5.11.3+dfsg1-1 [586 kB] Get:297 http://debian.oregonstate.edu/debian unstable/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get:298 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB] Get:299 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get:300 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-util0 armhf 0.3.8-3+b2 [21.9 kB] Get:301 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-image0 armhf 0.4.0-1+b2 [23.3 kB] Get:302 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.8 kB] Get:303 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.4 kB] Get:304 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xinerama0 armhf 1.13.1-2 [98.7 kB] Get:305 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xkb1 armhf 1.13.1-2 [120 kB] Get:306 http://debian.oregonstate.edu/debian unstable/main armhf libxi6 armhf 2:1.7.9-1 [78.4 kB] Get:307 http://debian.oregonstate.edu/debian unstable/main armhf libxkbcommon0 armhf 0.8.2-1 [111 kB] Get:308 http://debian.oregonstate.edu/debian unstable/main armhf libxkbcommon-x11-0 armhf 0.8.2-1 [37.9 kB] Get:309 http://debian.oregonstate.edu/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get:310 http://debian.oregonstate.edu/debian unstable/main armhf libqt5gui5 armhf 5.11.3+dfsg1-1 [2281 kB] Get:311 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5 amd64 5.11.3+dfsg1-1 [144 kB] Get:312 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5help5 amd64 5.11.3-4 [149 kB] Get:313 http://debian.oregonstate.edu/debian unstable/main armhf libqt5widgets5 armhf 5.11.3+dfsg1-1 [1998 kB] Get:314 http://debian.oregonstate.edu/debian unstable/main armhf libqt5printsupport5 armhf 5.11.3+dfsg1-1 [200 kB] Get:315 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.11.3-4 [50.6 kB] Get:316 http://debian.oregonstate.edu/debian unstable/main armhf libqt5sql5 armhf 5.11.3+dfsg1-1 [129 kB] Get:317 http://debian.oregonstate.edu/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.11.3+dfsg1-1 [71.4 kB] Get:318 http://debian.oregonstate.edu/debian unstable/main armhf libqt5test5 armhf 5.11.3+dfsg1-1 [135 kB] Get:319 http://debian.oregonstate.edu/debian unstable/main armhf libqt5xml5 armhf 5.11.3+dfsg1-1 [114 kB] Get:320 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-8-dev armhf 8.3.0-7 [1585 kB] Get:321 http://debian.oregonstate.edu/debian unstable/main armhf libvulkan1 armhf 1.1.101.0-2 [80.2 kB] Get:322 http://debian.oregonstate.edu/debian unstable/main armhf libvulkan-dev armhf 1.1.101.0-2 [391 kB] Get:323 http://debian.oregonstate.edu/debian unstable/main amd64 qtchooser amd64 66-1 [26.3 kB] Get:324 http://debian.oregonstate.edu/debian unstable/main amd64 qdoc-qt5 amd64 5.11.3-4 [467 kB] Get:325 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-assistant amd64 5.11.3-4 [758 kB] Get:326 http://debian.oregonstate.edu/debian unstable/main amd64 qt5-qmake-bin amd64 5.11.3+dfsg1-1 [1002 kB] Get:327 http://debian.oregonstate.edu/debian unstable/main armhf qt5-qmake armhf 5.11.3+dfsg1-1 [212 kB] Get:328 http://debian.oregonstate.edu/debian unstable/main amd64 qtbase5-dev-tools amd64 5.11.3+dfsg1-1 [769 kB] Get:329 http://debian.oregonstate.edu/debian unstable/main armhf qtbase5-dev armhf 5.11.3+dfsg1-1 [960 kB] Get:330 http://debian.oregonstate.edu/debian unstable/main amd64 qttools5-dev-tools amd64 5.11.3-4 [1069 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 149 MB in 2s (60.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14988 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../006-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcap2:amd64. Preparing to unpack .../007-libcap2_1%3a2.25-2_amd64.deb ... Unpacking libcap2:amd64 (1:2.25-2) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../008-libcap2-bin_1%3a2.25-2_amd64.deb ... Unpacking libcap2-bin (1:2.25-2) ... Selecting previously unselected package libgstreamer1.0-0:amd64. Preparing to unpack .../009-libgstreamer1.0-0_1.14.4-1_amd64.deb ... Unpacking libgstreamer1.0-0:amd64 (1.14.4-1) ... Selecting previously unselected package liborc-0.4-0:amd64. Preparing to unpack .../010-liborc-0.4-0_1%3a0.4.28-3.1_amd64.deb ... Unpacking liborc-0.4-0:amd64 (1:0.4.28-3.1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../011-iso-codes_4.2-1_all.deb ... Unpacking iso-codes (4.2-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. Preparing to unpack .../012-libgstreamer-plugins-base1.0-0_1.14.4-1_amd64.deb ... Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.14.4-1) ... Selecting previously unselected package libhyphen0:amd64. Preparing to unpack .../013-libhyphen0_2.8.8-7_amd64.deb ... Unpacking libhyphen0:amd64 (2.8.8-7) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../014-libjpeg62-turbo_1%3a1.5.2-2+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../015-libpng16-16_1.6.36-6_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-6) ... Selecting previously unselected package libdouble-conversion1:amd64. Preparing to unpack .../016-libdouble-conversion1_3.1.0-3_amd64.deb ... Unpacking libdouble-conversion1:amd64 (3.1.0-3) ... Selecting previously unselected package libpcre2-16-0:amd64. 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Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.26-2) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1) ... Setting up libffi6:armhf (3.2.1-9) ... Setting up libidn2-0:armhf (2.0.5-1) ... Setting up libcom-err2:armhf (1.45.0-1) ... Setting up libgomp1:armhf (8.3.0-7) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libpcre2-16-0:amd64 (10.32-5) ... Setting up libpcre2-16-0:armhf (10.32-5) ... Setting up libsystemd0:armhf (241-3) ... Setting up libcap2:amd64 (1:2.25-2) ... Setting up libopengl0:armhf (1.1.0-1) ... Setting up libkrb5support0:amd64 (1.17-2) ... Setting up libkrb5support0:armhf (1.17-2) ... Setting up libcap2-bin (1:2.25-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libpcre3:armhf (2:8.39-12) ... Setting up libwayland-bin (1.16.0-1) ... Setting up autotools-dev (20180224.1) ... Setting up libgles2:armhf (1.1.0-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Setting up qt5-qmake-bin (5.11.3+dfsg1-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libgmp10:armhf (2:6.1.2+dfsg-4) ... Setting up libavahi-common-data:amd64 (0.7-4+b1) ... Setting up libavahi-common-data:armhf (0.7-4+b1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libgles1:armhf (1.1.0-1) ... Setting up libdbus-1-3:amd64 (1.12.12-1) ... Setting up libdbus-1-3:armhf (1.12.12-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libp11-kit0:armhf (0.23.15-2) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libpng16-16:armhf (1.6.36-6) ... Setting up libatomic1:armhf (8.3.0-7) ... Setting up libuuid1:armhf (2.33.1-0.1) ... Setting up liborc-0.4-0:amd64 (1:0.4.28-3.1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libsensors5:armhf (1:3.5.0-3) ... Setting up libk5crypto3:amd64 (1.17-2) ... Setting up libk5crypto3:armhf (1.17-2) ... Setting up libnettle6:armhf (3.4.1-1) ... Setting up libglapi-mesa:amd64 (18.3.6-1) ... Setting up libglapi-mesa:armhf (18.3.6-1) ... Setting up libmtdev1:amd64 (1.1.5-1+b1) ... Setting up libmtdev1:armhf (1.1.5-1+b1) ... Setting up libvulkan1:armhf (1.1.101.0-2) ... Setting up libudev1:armhf (241-3) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libxslt1.1:amd64 (1.1.32-2) ... Setting up libtasn1-6:armhf (4.13-3) ... Setting up libc6-dev:armhf (2.28-9) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libkrb5-3:amd64 (1.17-2) ... Setting up libkrb5-3:armhf (1.17-2) ... Setting up libwayland-egl1:armhf (1.16.0-1) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libelf1:armhf (0.176-1) ... Setting up libevdev2:amd64 (1.6.0+dfsg-1) ... Setting up libevdev2:armhf (1.6.0+dfsg-1) ... Setting up libdouble-conversion1:amd64 (3.1.0-3) ... Setting up libblkid1:armhf (2.33.1-0.1) ... Setting up iso-codes (4.2-1) ... Setting up libstdc++6:armhf (8.3.0-7) ... Setting up libgudev-1.0-0:amd64 (232-2) ... Setting up qtchooser (66-1) ... Setting up libgstreamer1.0-0:amd64 (1.14.4-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libtinfo6:armhf (6.1+20181013-2) ... Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:amd64 (0.8.2-1) ... Setting up libxkbcommon0:armhf (0.8.2-1) ... Setting up libwayland-client0:amd64 (1.16.0-1) ... Setting up libwayland-client0:armhf (1.16.0-1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libwayland-server0:armhf (1.16.0-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libvulkan-dev:armhf (1.1.101.0-2) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libxcb-xfixes0:amd64 (1.13.1-2) ... Setting up libxcb-xfixes0:armhf (1.13.1-2) ... Setting up libxau-dev:armhf (1:1.0.8-1+b2) ... Setting up qt5-qmake:armhf (5.11.3+dfsg1-1) ... Setting up libwoff1:amd64 (1.0.2-1) ... Setting up libtool (2.4.6-10) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libxshmfence-dev:armhf (1.3-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhogweed4:armhf (3.4.1-1) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libxcb-glx0:armhf (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libedit2:armhf (3.1-20181209-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.13.1-2) ... Setting up libxcb-shape0:armhf (1.13.1-2) ... Setting up libavahi-common3:amd64 (0.7-4+b1) ... Setting up libavahi-common3:armhf (0.7-4+b1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ... Setting up libgstreamer-plugins-base1.0-0:amd64 (1.14.4-1) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libxcb-icccm4:armhf (0.4.1-1.1) ... Setting up libxcb-util0:amd64 (0.3.8-3+b2) ... Setting up libxcb-util0:armhf (0.3.8-3+b2) ... Setting up libicu63:armhf (63.1-6) ... Setting up libxcb-xkb1:amd64 (1.13.1-2) ... Setting up libxcb-xkb1:armhf (1.13.1-2) ... Setting up libxcb-image0:amd64 (0.4.0-1+b2) ... Setting up libxcb-image0:armhf (0.4.0-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libxcb-present0:armhf (1.13.1-2) ... Setting up libselinux1:armhf (2.8-1+b1) ... Setting up libasan5:armhf (8.3.0-7) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libxcb-xinerama0:amd64 (1.13.1-2) ... Setting up libxcb-xinerama0:armhf (1.13.1-2) ... Setting up libgnutls30:armhf (3.6.7-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libfreetype6:amd64 (2.9.1-3) ... Setting up libfreetype6:armhf (2.9.1-3) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up libxcb-sync1:armhf (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:amd64 (0.8.2-1) ... Setting up libxkbcommon-x11-0:armhf (0.8.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-2) ... Setting up libgssapi-krb5-2:armhf (1.17-2) ... Setting up libqt5core5a:amd64 (5.11.3+dfsg1-1) ... Setting up autoconf (2.69-11) ... Setting up libubsan1:armhf (8.3.0-7) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libxcb-dri2-0:armhf (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up libdrm2:armhf (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:amd64 (5.11.3+dfsg1-1) ... Setting up libmount1:armhf (2.33.1-0.1) ... Setting up libwayland-cursor0:armhf (1.16.0-1) ... Setting up libxcb-randr0:amd64 (1.13.1-2) ... Setting up libxcb-randr0:armhf (1.13.1-2) ... Setting up libllvm7:amd64 (1:7.0.1-8) ... Setting up libllvm7:armhf (1:7.0.1-8) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up libclang1-7 (1:7.0.1-8) ... Setting up libdrm-omap1:armhf (2.4.97-1) ... Setting up libqt5sensors5:amd64 (5.11.3-2) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libwacom2:amd64 (0.32-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-4+b1) ... Setting up libavahi-client3:armhf (0.7-4+b1) ... Setting up libdrm-exynos1:armhf (2.4.97-1) ... Setting up libdouble-conversion1:armhf (3.1.0-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up libdrm-amdgpu1:armhf (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libxcb-dri3-0:armhf (1.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up libdrm-nouveau2:armhf (2.4.97-1) ... Setting up libdrm-etnaviv1:armhf (2.4.97-1) ... Setting up libxcb1-dev:armhf (1.13.1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libgbm1:amd64 (18.3.6-1) ... Setting up libgbm1:armhf (18.3.6-1) ... Setting up libglib2.0-0:armhf (2.58.3-1) ... /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 47: /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: /usr/lib/arm-linux-gnueabihf/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 50: /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: /usr/lib/arm-linux-gnueabihf/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up libdrm-radeon1:armhf (2.4.97-1) ... Setting up qdoc-qt5 (5.11.3-4) ... Setting up po-debconf (1.0.21) ... Setting up libqt5positioning5:amd64 (5.11.3+dfsg-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-1) ... Setting up libgl1-mesa-dri:armhf (18.3.6-1) ... Setting up libx11-dev:armhf (2:1.6.7-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:armhf (1.13.1-2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libwayland-dev:armhf (1.16.0-1) ... Setting up libqt5network5:amd64 (5.11.3+dfsg1-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2) ... Setting up libqt5sql5:amd64 (5.11.3+dfsg1-1) ... Setting up qtbase5-dev-tools (5.11.3+dfsg1-1) ... Setting up libqt5xml5:amd64 (5.11.3+dfsg1-1) ... Setting up libegl-mesa0:amd64 (18.3.6-1) ... Setting up libegl-mesa0:armhf (18.3.6-1) ... Setting up libxcb-dri2-0-dev:armhf (1.13.1-2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libxfixes3:armhf (1:5.0.3-1) ... Setting up libqt5qml5:amd64 (5.11.3-4) ... Setting up libdrm-freedreno1:armhf (2.4.97-1) ... Setting up libqt5webchannel5:amd64 (5.11.3-2) ... Setting up libxcb-render0-dev:armhf (1.13.1-2) ... Setting up libxcb-glx0-dev:armhf (1.13.1-2) ... Setting up libdrm-tegra0:armhf (2.4.97-1) ... Setting up libqt5core5a:armhf (5.11.3+dfsg1-1) ... Setting up libgcc-8-dev:armhf (8.3.0-7) ... Setting up libxcb-shape0-dev:armhf (1.13.1-2) ... Setting up libxext-dev:armhf (2:1.3.3-1+b2) ... Setting up libcups2:amd64 (2.2.10-6) ... Setting up libcups2:armhf (2.2.10-6) ... Setting up libqt5dbus5:armhf (5.11.3+dfsg1-1) ... Setting up libegl1:amd64 (1.1.0-1) ... Setting up libegl1:armhf (1.1.0-1) ... Setting up libxcb-sync-dev:armhf (1.13.1-2) ... Setting up libharfbuzz0b:armhf (2.3.1-1) ... Setting up libxcb-xfixes0-dev:armhf (1.13.1-2) ... Setting up libqt5test5:armhf (5.11.3+dfsg1-1) ... Setting up libqt5concurrent5:armhf (5.11.3+dfsg1-1) ... Setting up libgudev-1.0-0:armhf (232-2) ... Setting up libstdc++-8-dev:armhf (8.3.0-7) ... Setting up libinput10:amd64 (1.12.6-2) ... Setting up libx11-xcb-dev:armhf (2:1.6.7-1) ... Setting up libdrm-dev:armhf (2.4.97-1) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxdamage1:armhf (1:1.1.4-3+b3) ... Setting up libqt5sql5-sqlite:amd64 (5.11.3+dfsg1-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxi6:armhf (2:1.7.9-1) ... Setting up libxxf86vm-dev:armhf (1:1.1.4-1+b2) ... Setting up libqt5network5:armhf (5.11.3+dfsg1-1) ... Setting up libqt5sql5:armhf (5.11.3+dfsg1-1) ... Setting up libxfixes-dev:armhf (1:5.0.3-1) ... Setting up libqt5xml5:armhf (5.11.3+dfsg1-1) ... Setting up libxcb-randr0-dev:armhf (1.13.1-2) ... Setting up libxcb-present-dev:armhf (1.13.1-2) ... Setting up mesa-common-dev:armhf (18.3.6-1) ... Setting up libwacom2:armhf (0.32-1) ... Setting up libxdamage-dev:armhf (1:1.1.4-3+b3) ... Setting up libinput10:armhf (1.12.6-2) ... Setting up libglx-mesa0:amd64 (18.3.6-1) ... Setting up libglx-mesa0:armhf (18.3.6-1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libglx0:armhf (1.1.0-1) ... Setting up libqt5gui5:armhf (5.11.3+dfsg1-1) ... Setting up libqt5widgets5:armhf (5.11.3+dfsg1-1) ... Setting up libqt5printsupport5:armhf (5.11.3+dfsg1-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up libgl1:armhf (1.1.0-1) ... Setting up libqt5gui5:amd64 (5.11.3+dfsg1-1) ... Setting up libglvnd-dev:armhf (1.1.0-1) ... Setting up libqt5widgets5:amd64 (5.11.3+dfsg1-1) ... Setting up libqt5help5:amd64 (5.11.3-4) ... Setting up libqt5printsupport5:amd64 (5.11.3+dfsg1-1) ... Setting up libqt5quick5:amd64 (5.11.3-4) ... Setting up libegl1-mesa-dev:armhf (18.3.6-1) ... Setting up libgles2-mesa-dev:armhf (18.3.6-1) ... Setting up libqt5designer5:amd64 (5.11.3-4) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha2-21) ... Setting up libqt5designercomponents5:amd64 (5.11.3-4) ... Setting up libqt5quickwidgets5:amd64 (5.11.3-4) ... Setting up qtbase5-dev:armhf (5.11.3+dfsg1-1) ... Setting up qt5-assistant (5.11.3-4) ... Setting up qttools5-dev-tools (5.11.3-4) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up sbuild-build-depends-clustalx-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-9 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armhf-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armhf-cross_8.3.0-7cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-arm-linux-gnueabihf_2.31.1-16 binutils-common_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-arm-linux-gnueabihf_8.3.0-7cross1 cpp-arm-linux-gnueabihf_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-armhf_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-arm-linux-gnueabihf_8.3.0-7cross1 g++-arm-linux-gnueabihf_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-arm-linux-gnueabihf_8.3.0-7cross1 gcc-8-arm-linux-gnueabihf-base_8.3.0-7cross1 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-arm-linux-gnueabihf_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 iso-codes_4.2-1 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libasan5-armhf-cross_8.3.0-7cross1 libatomic1_8.3.0-7 libatomic1-armhf-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libavahi-client3_0.7-4+b1 libavahi-common-data_0.7-4+b1 libavahi-common3_0.7-4+b1 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbrotli1_1.0.7-2 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-9 libc-dev-bin_2.28-9 libc6_2.28-9 libc6-armhf-cross_2.28-9cross1 libc6-dev_2.28-9 libc6-dev-armhf-cross_2.28-9cross1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcap2-bin_1:2.25-2 libcc1-0_8.3.0-7 libclang1-7_1:7.0.1-8 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcups2_2.2.10-6 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.12-1 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdouble-conversion1_3.1.0-3 libdpkg-perl_1.19.6 libdrm-amdgpu1_2.4.97-1 libdrm-common_2.4.97-1 libdrm-dev_2.4.97-1 libdrm-etnaviv1_2.4.97-1 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libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-16-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.36-6 libpthread-stubs0-dev_0.4-1 libqt5concurrent5_5.11.3+dfsg1-1 libqt5core5a_5.11.3+dfsg1-1 libqt5dbus5_5.11.3+dfsg1-1 libqt5designer5_5.11.3-4 libqt5designercomponents5_5.11.3-4 libqt5gui5_5.11.3+dfsg1-1 libqt5help5_5.11.3-4 libqt5network5_5.11.3+dfsg1-1 libqt5positioning5_5.11.3+dfsg-2 libqt5printsupport5_5.11.3+dfsg1-1 libqt5qml5_5.11.3-4 libqt5quick5_5.11.3-4 libqt5quickwidgets5_5.11.3-4 libqt5sensors5_5.11.3-2 libqt5sql5_5.11.3+dfsg1-1 libqt5sql5-sqlite_5.11.3+dfsg1-1 libqt5test5_5.11.3+dfsg1-1 libqt5webchannel5_5.11.3-2 libqt5webkit5_5.212.0~alpha2-21 libqt5widgets5_5.11.3+dfsg1-1 libqt5xml5_5.11.3+dfsg1-1 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsensors-config_1:3.5.0-3 libsensors5_1:3.5.0-3 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-2 libss2_1.45.0-1 libssl1.1_1.1.1b-2 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armhf-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armhf-cross_8.3.0-7cross1 libsystemd0_241-3 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libubsan1-armhf-cross_8.3.0-7cross1 libuchardet0_0.0.6-3 libudev1_241-3 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libvulkan-dev_1.1.101.0-2 libvulkan1_1.1.101.0-2 libwacom-common_0.32-1 libwacom2_0.32-1 libwayland-bin_1.16.0-1 libwayland-client0_1.16.0-1 libwayland-cursor0_1.16.0-1 libwayland-dev_1.16.0-1 libwayland-egl1_1.16.0-1 libwayland-server0_1.16.0-1 libwebp6_0.6.1-2 libwoff1_1.0.2-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1+b2 libxcb-keysyms1_0.4.0-1+b2 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-util0_0.3.8-3+b2 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb-xinerama0_1.13.1-2 libxcb-xkb1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdamage-dev_1:1.1.4-3+b3 libxdamage1_1:1.1.4-3+b3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxkbcommon-x11-0_0.8.2-1 libxkbcommon0_0.8.2-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxslt1.1_1.1.32-2 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-armhf-cross_4.19.28-2cross1 login_1:4.5-1.1 lsb-base_10.2019031300 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mesa-common-dev_18.3.6-1 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 qdoc-qt5_5.11.3-4 qt5-assistant_5.11.3-4 qt5-qmake_5.11.3+dfsg1-1 qt5-qmake-bin_5.11.3+dfsg1-1 qtbase5-dev_5.11.3+dfsg1-1 qtbase5-dev-tools_5.11.3+dfsg1-1 qtchooser_66-1 qttools5-dev-tools_5.11.3-4 sbuild-build-depends-clustalx-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xkb-data_2.26-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 24 19:18:02 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-8.dsc dpkg-source: info: extracting clustalx in /<>/clustalx-2.1+lgpl dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-ef186276-8aac-4d3a-a6f4-7c4d948fe44f SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>/clustalx-2.1+lgpl' rm -f moc_* dh_clean make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/clustalx-2.1+lgpl' dh_auto_configure arm-linux-gnueabihf-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/clustalx-2.1+lgpl/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_build -a make -j1 make[1]: Entering directory '/<>/clustalx-2.1+lgpl' arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function 'virtual void AlignmentParameters::showEvent(QShowEvent*)': AlignmentParameters.cpp:48:49: warning: unused parameter 'event' [-Wunused-parameter] void AlignmentParameters::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeGapPenaltyData()': AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i = 0; i < len && i < gapMask->size(); i++) ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeSecStructData()': AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i = 0; i < len && i < _secStructMask->size();i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i = 0; i < len && i < ssMask.size(); i++) ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function 'virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)': AlignmentViewerWidget.cpp:781:58: warning: unused parameter 'event' [-Wunused-parameter] void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) ~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor 'AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)': AlignmentWidget.h:170:10: warning: 'AlignmentWidget::blackAndWhite' will be initialized after [-Wreorder] bool blackAndWhite; ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: 'std::vector >* AlignmentWidget::selectedColoredRes' [-Wreorder] std::vector* selectedColoredRes; ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calculatePixMaps()': AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned int j = 0; j < lengthLongestSeq; j++) ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(code >= 0 && code < conservationPixmaps->size()) ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable 'codeForSpace' [-Wunused-variable] int codeForSpace = clustalw::userParameters->resIndex( ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generateSecStructurePixmaps()': AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(i < secStructPixmaps->size() && i < secStructInfo.size()) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::drawContents(QPainter*, int, int, int, int)': AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(selectedRes >= selectedColoredRes->size()) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calcConserveInfo()': AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int j = 1; j <= strongGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int j = 1; j <= weakGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if((i + _fRes - 1 < (*alignment)[j].size()) && ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] (i + _fRes - 1 < (*alignment)[_fSeq].size())) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)': AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'QString AlignmentWidget::initConsensus()': AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generatePixMaps()': AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int j = 0; j < aminoAcid.size(); j++) ~~^~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from AlignOutputFileNames.cpp:23: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from BootstrapTreeDialog.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] // tr("colorrules not found in the parameter file, using\ ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:85:46: warning: unused parameter 'parentItem' [-Wunused-parameter] QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:138:86: warning: unused parameter 'parentItem' [-Wunused-parameter] void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:175:85: warning: unused parameter 'parentItem' [-Wunused-parameter] int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'QColor ColorParameters::getResidueColor(QChar, QChar)': ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable 'temp' [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:157:10: warning: unused variable 'showRes' [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable 'showCon' [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function 'int ColorParameters::getResidueColorNum(QChar, QChar)': ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable 'temp' [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:194:10: warning: unused variable 'showRes' [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable 'showCon' [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function 'void ColorParameters::printColorInfo()': ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'int ColorParameters::getIndexOfColor(QColor)': ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'QColor ColorParameters::getColorFromNum(int)': ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if(colorNum > 0 && colorNum - 1 < colorPar.size()) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function 'virtual void ColumnScoreParams::showEvent(QShowEvent*)': ColumnScoreParams.cpp:51:47: warning: unused parameter 'event' [-Wunused-parameter] void ColumnScoreParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function 'std::__cxx11::string* HelpDisplayWidget::loadHelpInformation(char)': HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=] catch(ifstream::failure e) ^ HelpDisplayWidget.cpp:61:13: warning: variable 'number' set but not used [-Wunused-but-set-variable] int i, number, nlines; ^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function 'void HistogramWidget::drawContents(QPainter*, int, int, int, int)': HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function 'virtual void LowScoringSegParams::showEvent(QShowEvent*)': LowScoringSegParams.cpp:51:49: warning: unused parameter 'event' [-Wunused-parameter] void LowScoringSegParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ mainwindow.cpp: In member function 'virtual void MainWindow::showEvent(QShowEvent*)': mainwindow.cpp:198:40: warning: unused parameter 'event' [-Wunused-parameter] void MainWindow::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function 'void MainWindow::writeViewer1AsPostscript(int)': mainwindow.cpp:1454:47: warning: unused parameter 'type' [-Wunused-parameter] void MainWindow::writeViewer1AsPostscript(int type) ~~~~^~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function 'virtual void PairwiseParams::showEvent(QShowEvent*)': PairwiseParams.cpp:74:44: warning: unused parameter 'event' [-Wunused-parameter] void PairwiseParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::writePSFile(PostscriptFileParams*)': PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(res.isLetter() && resNumber.size() > i - data->firstSeq) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(res.isLetter() && resNumber.size() > seq) ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(res.isLetter() && resNumber.size() > i) ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable 'err' [-Wunused-variable] int err; ^~~ PSPrinter.cpp:73:9: warning: unused variable 'gapPos1' [-Wunused-variable] int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable 'gapPos2' [-Wunused-variable] int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local ^~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)': PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(data->nameHeader.size() > ix) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function 'void PSPrinter::printFooterLine(std::ofstream*, int, int)': PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i = fr; i <= lr && i < ruler.length(); i++) ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)': PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable 'psY' [-Wunused-variable] int psX, psY, curveBottom; ^~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function 'virtual void SeqNameWidget::paintEvent(QPaintEvent*)': SeqNameWidget.cpp:375:11: warning: variable 'redrawRect' set but not used [-Wunused-but-set-variable] QRect redrawRect = event->rect(); ^~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from TreeOutputFileNames.cpp:14: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from /usr/arm-linux-gnueabihf/include/c++/8/thread:39, from /usr/arm-linux-gnueabihf/include/c++/8/future:39, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/qthread.h:50, from /usr/include/arm-linux-gnueabihf/qt5/QtCore/QtCore:223, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function 'void clustalw::Clustal::align(std::__cxx11::string*, bool)': clustalW/Clustal.cpp:162:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function 'void clustalw::Clustal::doAlignUseOldTree(std::__cxx11::string*)': clustalW/Clustal.cpp:837:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function 'bool clustalw::Alignment::keepPortionOfSeqArray(int, int)': clustalW/alignment/Alignment.cpp:1715:24: warning: variable 'posToAddTo' set but not used [-Wunused-but-set-variable] SeqArray::iterator posToAddTo = sectionToRealign.begin(); ^~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] catch(exception e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)': clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function 'int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::__cxx11::string*)': clustalW/fileInput/FileReader.cpp:155:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fileParser; // Means we dont need to delete it! ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function 'void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)': clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] catch(exception ex) ^~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function 'virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::__cxx11::string*)': clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter 'offendingSeq' [-Wunused-parameter] vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function 'virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter 'secStructName' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter 'length' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function 'virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::__cxx11::string*)': clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter 'offendingSeq' [-Wunused-parameter] Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function 'virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter 'secStructMask' [-Wunused-parameter] vector& secStructMask, string& secStructName, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter 'secStructName' [-Wunused-parameter] vector& secStructMask, string& secStructName, ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter 'length' [-Wunused-parameter] int &structPenalties, int length) ~~~~^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function 'virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter 'secStructName' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter 'length' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~^~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function 'virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)': clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function 'std::__cxx11::string clustalw::ClustalWResources::findFile(std::__cxx11::string, clustalw::ClustalWResourcePathType) const': clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds] delim[1] = 0; ~~~~~~~^ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor 'clustalw::UserParameters::UserParameters(bool)': clustalW/general/UserParameters.cpp:33:37: warning: unused parameter 'log' [-Wunused-parameter] UserParameters::UserParameters(bool log) ~~~~~^~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function 'bool clustalw::Utility::lineType(char*, const char*)': clustalW/general/Utility.cpp:251:8: warning: variable 'n' set but not used [-Wunused-but-set-variable] int n; ^ clustalW/general/Utility.cpp: In member function 'virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)': clustalW/general/Utility.cpp:519:39: warning: unused parameter 'ptrToLabelObj' [-Wunused-parameter] void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': clustalW/general/Utility.cpp:183:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': clustalW/general/Utility.cpp:221:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from clustalW/general/Utility.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from clustalW/general/Utility.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62, from clustalW/general/Utility.cpp:18: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In member function 'double clustalw::Utility::median(std::vector)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor 'clustalw::InteractiveMenu::InteractiveMenu()': clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] catch(bad_alloc) ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function 'int clustalw::InteractiveMenu::secStrOutputOptions()': clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] clustalObj->getHelp('C'); ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here case 'Q': ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ~~~~~~~^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)': clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable 'alignmentScore' [-Wunused-variable] int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::__cxx11::string)': clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter 'phylipName' [-Wunused-parameter] string phylipName) ~~~~~~~^~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function 'void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)': clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] if ((ix < 0) || (ix > _maxAA)) ~~~^~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::tempInterface(int, int)': clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter 'alignResidueType' [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter 'alignType' [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)': clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized] return (maxRes); ^ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function 'void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)': clustalW/tree/ClusterTree.cpp:580:9: warning: variable 'rs' set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable 'rl' set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69, from clustalW/tree/NJTree.h:9, from clustalW/tree/NJTree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64, from clustalW/tree/NJTree.h:9, from clustalW/tree/NJTree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'virtual void clustalw::NJTree::generateTree(clustalw::PhyloTree*, clustalw::DistMatrix*, clustalw::SeqInfo*, std::ofstream*)': /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr Tree::createSets(int firstSeq, int lastSeq) ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp: In member function 'std::auto_ptr clustalw::Tree::createSets(int, int)': clustalW/tree/Tree.cpp:280:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progAlignSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)': clustalW/tree/TreeInterface.cpp:200:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::__cxx11::string*, std::vector*, int, int, bool*)': clustalW/tree/TreeInterface.cpp:214:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::__cxx11::string*, std::vector*, int, int, bool*)': clustalW/tree/TreeInterface.cpp:445:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)': clustalW/tree/TreeInterface.cpp:490:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)': clustalW/tree/TreeInterface.cpp:506:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function 'std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string&)': clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -dM -E -o moc_predefs.h /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:9: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from AlignOutputFileNames.h:9, from moc_AlignOutputFileNames.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:9: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from BootstrapTreeDialog.h:10, from moc_BootstrapTreeDialog.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include FileDialog.h -o moc_FileDialog.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include mainwindow.h -o moc_mainwindow.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/locale_conv.h:41, from /usr/arm-linux-gnueabihf/include/c++/8/locale:43, from /usr/arm-linux-gnueabihf/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SearchForString.h -o moc_SearchForString.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:9: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from TreeOutputFileNames.h:9, from moc_TreeOutputFileNames.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtXml -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/arm-linux-gnueabihf/include/c++/8 -I/usr/arm-linux-gnueabihf/include/c++/8/arm-linux-gnueabihf -I/usr/arm-linux-gnueabihf/include/c++/8/backward -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include -I/usr/lib/gcc-cross/arm-linux-gnueabihf/8/include-fixed -I/usr/arm-linux-gnueabihf/include -I/usr/include/arm-linux-gnueabihf -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp arm-linux-gnueabihf-g++ -c -pipe -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -I. -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:9: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/8/memory:80, from WritePostscriptFile.h:9, from moc_WritePostscriptFile.cpp:9: /usr/arm-linux-gnueabihf/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o -lQt5Widgets -lQt5Gui -lQt5Xml -lQt5Core -lGLESv2 -lpthread /usr/lib/gcc-cross/arm-linux-gnueabihf/8/../../../../arm-linux-gnueabihf/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/clustalx-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/clustalx/usr/bin/clustalx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clustalx/usr/bin/clustalx was not linked against libGLESv2.so.2 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-8_armhf.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-8_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../clustalx_2.1+lgpl-8_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-05-01T08:42:18Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-AZwgUB/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-clustalx-dummy sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-AZwgUB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AZwgUB/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-AZwgUB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AZwgUB/apt_archive ./ Sources [774 B] Get:5 copy:/<>/resolver-AZwgUB/apt_archive ./ Packages [849 B] Fetched 2586 B in 0s (149 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 5592 kB of archives. After this operation, 15.2 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AZwgUB/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.13.0 [1175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5592 kB in 0s (28.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 25088 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package gpg. 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Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-9) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-8_armhf.changes: ---------------------------------- Format: 1.8 Date: Sun, 24 Feb 2019 20:04:40 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 2.1+lgpl-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Closes: 923120 Changes: clustalx (2.1+lgpl-8) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. . [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_configure pass cross flags to qmake. Closes: #923120 . [ Andreas Tille ] * Standards-Version: 4.3.0 Checksums-Sha1: 8cf26be166544dbd0b40f224a2114d559630661b 12607320 clustalx-dbgsym_2.1+lgpl-8_armhf.deb 7b057dc07dc745c0ad31f75908c36a0a7b3525b5 9971 clustalx_2.1+lgpl-8_armhf.buildinfo aad5c0abff3f055cf94409a1652e2db636b00901 381356 clustalx_2.1+lgpl-8_armhf.deb Checksums-Sha256: 39205cfb8ef404825da2289246e0b224111724ad05a638a20398ca88436a1489 12607320 clustalx-dbgsym_2.1+lgpl-8_armhf.deb 183b639025a3ab214d7c738fb2d219b183b11ec340ff65a268525a7379fa1c72 9971 clustalx_2.1+lgpl-8_armhf.buildinfo 0e86cedb3ff32db4565a430a0bff20d3f4e467479f8e87c12221b1fab2a18a68 381356 clustalx_2.1+lgpl-8_armhf.deb Files: 7d78b8bd2eafa2b6f0e2d4b873f8b35c 12607320 debug optional clustalx-dbgsym_2.1+lgpl-8_armhf.deb b4dee75e218fc776cf39b9cb23a93975 9971 science optional clustalx_2.1+lgpl-8_armhf.buildinfo fbff299003349984d2e3fa4e1596000f 381356 science optional clustalx_2.1+lgpl-8_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalx Binary: clustalx Architecture: armhf Version: 2.1+lgpl-8 Checksums-Md5: 7d78b8bd2eafa2b6f0e2d4b873f8b35c 12607320 clustalx-dbgsym_2.1+lgpl-8_armhf.deb fbff299003349984d2e3fa4e1596000f 381356 clustalx_2.1+lgpl-8_armhf.deb Checksums-Sha1: 8cf26be166544dbd0b40f224a2114d559630661b 12607320 clustalx-dbgsym_2.1+lgpl-8_armhf.deb aad5c0abff3f055cf94409a1652e2db636b00901 381356 clustalx_2.1+lgpl-8_armhf.deb Checksums-Sha256: 39205cfb8ef404825da2289246e0b224111724ad05a638a20398ca88436a1489 12607320 clustalx-dbgsym_2.1+lgpl-8_armhf.deb 0e86cedb3ff32db4565a430a0bff20d3f4e467479f8e87c12221b1fab2a18a68 381356 clustalx_2.1+lgpl-8_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 01 May 2019 08:42:18 +0000 Build-Path: /<>/clustalx-2.1+lgpl Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.2), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-7), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.6), dpkg-dev (= 1.19.6), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), fontconfig (= 2.13.1-2), fontconfig-config (= 2.13.1-2), fonts-dejavu-core (= 2.37-1), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-7), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-7), gcc-8-base (= 8.3.0-7), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), iso-codes (= 4.2-1), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-7), libatomic1 (= 8.3.0-7), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-3), libaudit1 (= 1:2.8.4-3), libavahi-client3 (= 0.7-4+b1), libavahi-common-data (= 0.7-4+b1), libavahi-common3 (= 0.7-4+b1), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libbrotli1 (= 1.0.7-2), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-9), libc-dev-bin (= 2.28-9), libc6 (= 2.28-9), libc6-dev (= 2.28-9), libcap-ng0 (= 0.7.9-2), libcap2 (= 1:2.25-2), libcap2-bin (= 1:2.25-2), libcc1-0 (= 8.3.0-7), libclang1-7 (= 1:7.0.1-8), libcom-err2 (= 1.45.0-1), libcroco3 (= 0.6.12-3), libcups2 (= 2.2.10-6), libdb5.3 (= 5.3.28+dfsg1-0.6), libdbus-1-3 (= 1.12.12-1), libdebconfclient0 (= 0.249), libdouble-conversion1 (= 3.1.0-3), libdpkg-perl (= 1.19.6), libdrm-amdgpu1 (= 2.4.97-1), libdrm-common (= 2.4.97-1), libdrm-dev (= 2.4.97-1), libdrm-etnaviv1 (= 2.4.97-1), libdrm-exynos1 (= 2.4.97-1), libdrm-freedreno1 (= 2.4.97-1), libdrm-intel1 (= 2.4.97-1), libdrm-nouveau2 (= 2.4.97-1), libdrm-omap1 (= 2.4.97-1), libdrm-radeon1 (= 2.4.97-1), libdrm-tegra0 (= 2.4.97-1), libdrm2 (= 2.4.97-1), libedit2 (= 3.1-20181209-1), libegl-mesa0 (= 18.3.6-1), libegl1 (= 1.1.0-1), libegl1-mesa-dev (= 18.3.6-1), libelf1 (= 0.176-1), libevdev2 (= 1.6.0+dfsg-1), libexpat1 (= 2.2.6-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libfontconfig1 (= 2.13.1-2), libfreetype6 (= 2.9.1-3), libgbm1 (= 18.3.6-1), libgcc-8-dev (= 8.3.0-7), libgcc1 (= 1:8.3.0-7), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libgl1 (= 1.1.0-1), libgl1-mesa-dri (= 18.3.6-1), libglapi-mesa (= 18.3.6-1), libgles1 (= 1.1.0-1), libgles2 (= 1.1.0-1), libgles2-mesa-dev (= 18.3.6-1), libglib2.0-0 (= 2.58.3-1), libglvnd-core-dev (= 1.1.0-1), libglvnd-dev (= 1.1.0-1), libglvnd0 (= 1.1.0-1), libglx-mesa0 (= 18.3.6-1), libglx0 (= 1.1.0-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.7-2), libgomp1 (= 8.3.0-7), libgpg-error0 (= 1.35-1), libgraphite2-3 (= 1.3.13-7), libgssapi-krb5-2 (= 1.17-2), libgstreamer-plugins-base1.0-0 (= 1.14.4-1), libgstreamer1.0-0 (= 1.14.4-1), libgudev-1.0-0 (= 232-2), libharfbuzz0b (= 2.3.1-1), libhogweed4 (= 3.4.1-1), libhyphen0 (= 2.8.8-7), libice6 (= 2:1.0.9-2), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libinput-bin (= 1.12.6-2), libinput10 (= 1.12.6-2), libisl19 (= 0.20-2), libitm1 (= 8.3.0-7), libjpeg62-turbo (= 1:1.5.2-2+b1), libk5crypto3 (= 1.17-2), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-2), libkrb5support0 (= 1.17-2), libllvm7 (= 1:7.0.1-8), liblsan0 (= 8.3.0-7), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-7), libmtdev1 (= 1.1.5-1+b1), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libopengl0 (= 1.1.0-1), liborc-0.4-0 (= 1:0.4.28-3.1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpciaccess0 (= 0.14-1), libpcre2-16-0 (= 10.32-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libpng16-16 (= 1.6.36-6), libpthread-stubs0-dev (= 0.4-1), libqt5concurrent5 (= 5.11.3+dfsg1-1), libqt5core5a (= 5.11.3+dfsg1-1), libqt5dbus5 (= 5.11.3+dfsg1-1), libqt5designer5 (= 5.11.3-4), libqt5designercomponents5 (= 5.11.3-4), libqt5gui5 (= 5.11.3+dfsg1-1), libqt5help5 (= 5.11.3-4), libqt5network5 (= 5.11.3+dfsg1-1), libqt5positioning5 (= 5.11.3+dfsg-2), libqt5printsupport5 (= 5.11.3+dfsg1-1), libqt5qml5 (= 5.11.3-4), libqt5quick5 (= 5.11.3-4), libqt5quickwidgets5 (= 5.11.3-4), libqt5sensors5 (= 5.11.3-2), libqt5sql5 (= 5.11.3+dfsg1-1), libqt5sql5-sqlite (= 5.11.3+dfsg1-1), libqt5test5 (= 5.11.3+dfsg1-1), libqt5webchannel5 (= 5.11.3-2), libqt5webkit5 (= 5.212.0~alpha2-21), libqt5widgets5 (= 5.11.3+dfsg1-1), libqt5xml5 (= 5.11.3+dfsg1-1), libquadmath0 (= 8.3.0-7), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsensors-config (= 1:3.5.0-3), libsensors5 (= 1:3.5.0-3), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.33.1-0.1), libsqlite3-0 (= 3.27.2-2), libssl1.1 (= 1.1.1b-2), libstdc++-8-dev (= 8.3.0-7), libstdc++6 (= 8.3.0-7), libsystemd0 (= 241-3), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-7), libubsan1 (= 8.3.0-7), libuchardet0 (= 0.0.6-3), libudev1 (= 241-3), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libvulkan-dev (= 1.1.101.0-2), libvulkan1 (= 1.1.101.0-2), libwacom-common (= 0.32-1), libwacom2 (= 0.32-1), libwayland-bin (= 1.16.0-1), libwayland-client0 (= 1.16.0-1), libwayland-cursor0 (= 1.16.0-1), libwayland-dev (= 1.16.0-1), libwayland-egl1 (= 1.16.0-1), libwayland-server0 (= 1.16.0-1), libwebp6 (= 0.6.1-2), libwoff1 (= 1.0.2-1), libx11-6 (= 2:1.6.7-1), libx11-data (= 2:1.6.7-1), libx11-dev (= 2:1.6.7-1), libx11-xcb-dev (= 2:1.6.7-1), libx11-xcb1 (= 2:1.6.7-1), libxau-dev (= 1:1.0.8-1+b2), libxau6 (= 1:1.0.8-1+b2), libxcb-dri2-0 (= 1.13.1-2), libxcb-dri2-0-dev (= 1.13.1-2), libxcb-dri3-0 (= 1.13.1-2), libxcb-dri3-dev (= 1.13.1-2), libxcb-glx0 (= 1.13.1-2), libxcb-glx0-dev (= 1.13.1-2), libxcb-icccm4 (= 0.4.1-1.1), libxcb-image0 (= 0.4.0-1+b2), libxcb-keysyms1 (= 0.4.0-1+b2), libxcb-present-dev (= 1.13.1-2), libxcb-present0 (= 1.13.1-2), libxcb-randr0 (= 1.13.1-2), libxcb-randr0-dev (= 1.13.1-2), libxcb-render-util0 (= 0.3.9-1+b1), libxcb-render0 (= 1.13.1-2), libxcb-render0-dev (= 1.13.1-2), libxcb-shape0 (= 1.13.1-2), libxcb-shape0-dev (= 1.13.1-2), libxcb-shm0 (= 1.13.1-2), libxcb-sync-dev (= 1.13.1-2), libxcb-sync1 (= 1.13.1-2), libxcb-util0 (= 0.3.8-3+b2), libxcb-xfixes0 (= 1.13.1-2), libxcb-xfixes0-dev (= 1.13.1-2), libxcb-xinerama0 (= 1.13.1-2), libxcb-xkb1 (= 1.13.1-2), libxcb1 (= 1.13.1-2), libxcb1-dev (= 1.13.1-2), libxdamage-dev (= 1:1.1.4-3+b3), libxdamage1 (= 1:1.1.4-3+b3), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1+b2), libxext6 (= 2:1.3.3-1+b2), libxfixes-dev (= 1:5.0.3-1), libxfixes3 (= 1:5.0.3-1), libxi6 (= 2:1.7.9-1), libxkbcommon-x11-0 (= 0.8.2-1), libxkbcommon0 (= 0.8.2-1), libxml2 (= 2.9.4+dfsg1-7+b3), libxrender1 (= 1:0.9.10-1), libxshmfence-dev (= 1.3-1), libxshmfence1 (= 1.3-1), libxslt1.1 (= 1.1.32-2), libxxf86vm-dev (= 1:1.1.4-1+b2), libxxf86vm1 (= 1:1.1.4-1+b2), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), lsb-base (= 10.2019031300), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), mesa-common-dev (= 18.3.6-1), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), qdoc-qt5 (= 5.11.3-4), qt5-assistant (= 5.11.3-4), qt5-qmake (= 5.11.3+dfsg1-1), qt5-qmake-bin (= 5.11.3+dfsg1-1), qtbase5-dev (= 5.11.3+dfsg1-1), qtbase5-dev-tools (= 5.11.3+dfsg1-1), qtchooser (= 66-1), qttools5-dev-tools (= 5.11.3-4), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-6), ucf (= 3.0038+nmu1), util-linux (= 2.33.1-0.1), x11-common (= 1:7.7+19), x11proto-core-dev (= 2018.4-4), x11proto-damage-dev (= 1:2018.4-4), x11proto-dev (= 2018.4-4), x11proto-fixes-dev (= 1:2018.4-4), x11proto-xext-dev (= 2018.4-4), x11proto-xf86vidmode-dev (= 2018.4-4), xkb-data (= 2.26-2), xorg-sgml-doctools (= 1:1.11-1), xtrans-dev (= 1.3.5-1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1551035080" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-8_armhf.deb ------------------------------------ new Debian package, version 2.0. size 12607320 bytes: control archive=540 bytes. 382 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-8 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 12571 Depends: clustalx (= 2.1+lgpl-8) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: 8aec0182624b2dbe744350777997cb991cbfbbe9 drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 12862388 2019-02-24 19:04 ./usr/lib/debug/.build-id/8a/ec0182624b2dbe744350777997cb991cbfbbe9.debug drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-8_armhf.deb ----------------------------- new Debian package, version 2.0. size 381356 bytes: control archive=1440 bytes. 1527 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-8 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 885 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgles2, libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/bin/ -rwxr-xr-x root/root 794756 2019-02-24 19:04 ./usr/bin/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2019-02-24 19:04 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/applications/ -rw-r--r-- root/root 876 2019-02-24 19:04 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2019-02-24 19:04 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 4511 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1826 2019-02-24 19:04 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2019-02-24 19:04 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2019-02-24 19:04 ./usr/share/mime/packages/clustalx.xml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 132760 Build-Time: 278 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 53 Job: clustalx_2.1+lgpl-8 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 342 Source-Version: 2.1+lgpl-8 Space: 132760 Status: successful Version: 2.1+lgpl-8 -------------------------------------------------------------------------------- Finished at 2019-05-01T08:42:18Z Build needed 00:05:42, 132760k disk space