sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley

+==============================================================================+
| clustalx 2.1+lgpl-9 (mipsel)                 Mon, 22 May 2023 12:44:23 +0000 |
+==============================================================================+

Package: clustalx
Version: 2.1+lgpl-9
Source Version: 2.1+lgpl-9
Distribution: unstable
Machine Architecture: amd64
Host Architecture: mipsel
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-2208c7d7-f47a-4c21-9772-175756fd1ad9' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/clustalx-g2B1nU/resolver-4uvc2x' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian sid InRelease [192 kB]
Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian sid/main Sources T-2023-05-22-0802.59-F-2023-05-22-0203.06.pdiff [4549 B]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-05-22-0802.59-F-2023-05-22-0203.06.pdiff [2873 B]
Get:4 http://localhost:3142/debian sid/main Sources T-2023-05-22-0802.59-F-2023-05-22-0203.06.pdiff [4549 B]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-05-22-0802.59-F-2023-05-22-0203.06.pdiff [2873 B]
Get:6 http://localhost:3142/debian sid/main mipsel Packages [9037 kB]
Fetched 9363 kB in 2s (3943 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/clustalx.git
Please use:
git clone https://salsa.debian.org/med-team/clustalx.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 359 kB of source archives.
Get:1 http://localhost:3142/debian sid/main clustalx 2.1+lgpl-9 (dsc) [2084 B]
Get:2 http://localhost:3142/debian sid/main clustalx 2.1+lgpl-9 (tar) [342 kB]
Get:3 http://localhost:3142/debian sid/main clustalx 2.1+lgpl-9 (diff) [15.2 kB]
Fetched 359 kB in 0s (7282 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/clustalx-g2B1nU/clustalx-2.1+lgpl' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/clustalx-g2B1nU' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel
Filtered Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [421 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [511 B]
Fetched 1889 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu
  bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config
  crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism
  dpkg-cross dwz file fontconfig fontconfig-config fonts-dejavu-core
  g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel
  gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu
  gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base
  groff-base intltool-debian iso-codes libarchive-zip-perl libatomic1:mipsel
  libatomic1-mipsel-cross libavahi-client3 libavahi-client3:mipsel
  libavahi-common-data libavahi-common-data:mipsel libavahi-common3
  libavahi-common3:mipsel libblkid1:mipsel libbrotli1 libbrotli1:mipsel
  libbsd0 libbsd0:mipsel libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross
  libc6-mipsel-cross libcap2:mipsel libcap2-bin libclang1-14
  libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl
  libcrypt-dev:mipsel libcrypt1:mipsel libcups2 libcups2:mipsel libdbus-1-3
  libdbus-1-3:mipsel libdebhelper-perl libdebian-dpkgcross-perl
  libdouble-conversion3 libdouble-conversion3:mipsel libdrm-amdgpu1
  libdrm-amdgpu1:mipsel libdrm-common libdrm-intel1 libdrm-nouveau2
  libdrm-nouveau2:mipsel libdrm-radeon1 libdrm-radeon1:mipsel libdrm2
  libdrm2:mipsel libdw1 libedit2 libedit2:mipsel libegl-dev:mipsel
  libegl-mesa0 libegl-mesa0:mipsel libegl1 libegl1:mipsel libelf1
  libelf1:mipsel libevdev2 libevdev2:mipsel libexpat1 libexpat1:mipsel
  libffi8:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfontconfig1:mipsel libfreetype6
  libfreetype6:mipsel libgbm1 libgbm1:mipsel libgcc-11-dev:mipsel
  libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross
  libgcrypt20:mipsel libgl-dev:mipsel libgl1 libgl1:mipsel libgl1-mesa-dri
  libgl1-mesa-dri:mipsel libglapi-mesa libglapi-mesa:mipsel libglib2.0-0
  libglib2.0-0:mipsel libglu1-mesa:mipsel libglu1-mesa-dev:mipsel libglvnd0
  libglvnd0:mipsel libglx-dev:mipsel libglx-mesa0 libglx-mesa0:mipsel libglx0
  libglx0:mipsel libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel
  libgomp1-mipsel-cross libgpg-error0:mipsel libgraphite2-3
  libgraphite2-3:mipsel libgssapi-krb5-2:mipsel libgstreamer-plugins-base1.0-0
  libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:mipsel libharfbuzz0b
  libharfbuzz0b:mipsel libhogweed6:mipsel libhyphen0 libice6 libice6:mipsel
  libicu72 libicu72:mipsel libidn2-0:mipsel libinput-bin libinput10
  libinput10:mipsel libio-string-perl libjpeg62-turbo libjpeg62-turbo:mipsel
  libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel
  libkrb5support0:mipsel libllvm14 libllvm15 libllvm15:mipsel
  liblocale-gettext-perl liblz4-1:mipsel liblzma5:mipsel libmagic-mgc
  libmagic1 libmd0:mipsel libmd4c0 libmd4c0:mipsel libmount1:mipsel libmtdev1
  libmtdev1:mipsel libncursesw6 libnettle8:mipsel libnsl-dev:mipsel
  libnsl2:mipsel libopengl-dev:mipsel libopengl0:mipsel liborc-0.4-0
  libp11-kit0:mipsel libpciaccess0 libpcre2-16-0 libpcre2-16-0:mipsel
  libpcre2-8-0:mipsel libpipeline1 libpng16-16 libpng16-16:mipsel
  libpthread-stubs0-dev:mipsel libpython3-stdlib libpython3.11-minimal
  libpython3.11-stdlib libqt5concurrent5:mipsel libqt5core5a
  libqt5core5a:mipsel libqt5dbus5 libqt5dbus5:mipsel libqt5designer5
  libqt5designercomponents5 libqt5gui5 libqt5gui5:mipsel libqt5help5
  libqt5network5 libqt5network5:mipsel libqt5positioning5 libqt5printsupport5
  libqt5printsupport5:mipsel libqt5qml5 libqt5qmlmodels5 libqt5quick5
  libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:mipsel
  libqt5sql5-sqlite libqt5test5:mipsel libqt5webchannel5 libqt5webkit5
  libqt5widgets5 libqt5widgets5:mipsel libqt5xml5 libqt5xml5:mipsel
  libreadline8 libselinux1:mipsel libsensors-config libsensors5
  libsensors5:mipsel libsm6 libsm6:mipsel libsqlite3-0 libssl3:mipsel
  libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel
  libstdc++6-mipsel-cross libsub-override-perl libsystemd0:mipsel
  libtasn1-6:mipsel libtinfo6:mipsel libtirpc-dev:mipsel libtirpc3:mipsel
  libtool libuchardet0 libudev1:mipsel libunistring2:mipsel libunwind8
  libuuid1:mipsel libvulkan-dev:mipsel libvulkan1:mipsel libwacom-common
  libwacom9 libwacom9:mipsel libwayland-client0 libwayland-client0:mipsel
  libwayland-server0 libwayland-server0:mipsel libwebp7 libwoff1 libx11-6
  libx11-6:mipsel libx11-data libx11-dev:mipsel libx11-xcb1 libx11-xcb1:mipsel
  libxau-dev:mipsel libxau6 libxau6:mipsel libxcb-dri2-0 libxcb-dri2-0:mipsel
  libxcb-dri3-0 libxcb-dri3-0:mipsel libxcb-glx0 libxcb-glx0:mipsel
  libxcb-icccm4 libxcb-icccm4:mipsel libxcb-image0 libxcb-image0:mipsel
  libxcb-keysyms1 libxcb-keysyms1:mipsel libxcb-present0
  libxcb-present0:mipsel libxcb-randr0 libxcb-randr0:mipsel
  libxcb-render-util0 libxcb-render-util0:mipsel libxcb-render0
  libxcb-render0:mipsel libxcb-shape0 libxcb-shape0:mipsel libxcb-shm0
  libxcb-shm0:mipsel libxcb-sync1 libxcb-sync1:mipsel libxcb-util1
  libxcb-util1:mipsel libxcb-xfixes0 libxcb-xfixes0:mipsel libxcb-xinerama0
  libxcb-xinerama0:mipsel libxcb-xinput0 libxcb-xinput0:mipsel libxcb-xkb1
  libxcb-xkb1:mipsel libxcb1 libxcb1:mipsel libxcb1-dev:mipsel
  libxdmcp-dev:mipsel libxdmcp6 libxdmcp6:mipsel libxext-dev:mipsel libxext6
  libxext6:mipsel libxfixes3 libxfixes3:mipsel libxkbcommon-x11-0
  libxkbcommon-x11-0:mipsel libxkbcommon0 libxkbcommon0:mipsel
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libxml2:mipsel libxrender1
  libxrender1:mipsel libxshmfence1 libxshmfence1:mipsel libxslt1.1 libxxf86vm1
  libxxf86vm1:mipsel libyaml-perl libz3-4 libz3-4:mipsel libzstd1:mipsel
  linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db media-types
  po-debconf python3 python3-minimal python3.11 python3.11-minimal qdoc-qt5
  qhelpgenerator-qt5 qt5-assistant qt5-qmake:mipsel qt5-qmake-bin
  qtattributionsscanner-qt5 qtbase5-dev:mipsel qtbase5-dev-tools qtchooser
  qttools5-dev-tools readline-common sensible-utils shared-mime-info ucf
  x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:mipsel
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales
  cpp-12-doc cpp-doc dh-make binutils-multiarch
  g++-12-multilib-mipsel-linux-gnu gcc-12-doc gcc-12-multilib-mipsel-linux-gnu
  manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc
  libasprintf-dev libgettextpo-dev groff isoquery glibc-doc:mipsel
  libc-l10n:mipsel locales:mipsel libnss-nis:mipsel libnss-nisplus:mipsel
  manpages-dev:mipsel cups-common cups-common:mipsel rng-tools:mipsel
  low-memory-monitor low-memory-monitor:mipsel gnutls-bin:mipsel
  krb5-doc:mipsel krb5-user:mipsel libvisual-0.4-plugins gstreamer1.0-tools
  cryptsetup-bin:mipsel pciutils libthai0 libthai0:mipsel qgnomeplatform-qt5
  qt5-image-formats-plugins qgnomeplatform-qt5:mipsel
  qt5-image-formats-plugins:mipsel qt5-qmltooling-plugins lm-sensors
  lm-sensors:mipsel libstdc++-11-doc:mipsel libtool-doc gfortran
  | fortran95-compiler gcj-jdk libwacom-bin libwacom-bin:mipsel
  libx11-doc:mipsel libxcb-doc:mipsel libxext-doc:mipsel libyaml-shell-perl
  m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python3.11-venv python3.11-doc binfmt-support qt5-doc
  default-libmysqlclient-dev:mipsel firebird-dev:mipsel libpq-dev:mipsel
  libsqlite3-dev:mipsel unixodbc-dev:mipsel readline-doc
Recommended packages:
  curl | wget | lynx libpam-cap dbus dbus:mipsel libarchive-cpio-perl
  libglib2.0-data xdg-user-dirs libglib2.0-data:mipsel xdg-user-dirs:mipsel
  libgpg-error-l10n:mipsel gstreamer1.0-plugins-base krb5-locales:mipsel
  libgpm2 qttranslations5-l10n qttranslations5-l10n:mipsel libqt5svg5
  qt5-gtk-platformtheme qtwayland5 libqt5svg5:mipsel
  qt5-gtk-platformtheme:mipsel qtwayland5:mipsel geoclue-2.0
  libqt5sql5-sqlite:mipsel | libqt5sql5-mysql:mipsel | libqt5sql5-odbc:mipsel
  | libqt5sql5-psql:mipsel | libqt5sql5-tds:mipsel | libqt5sql5-ibase:mipsel
  libltdl-dev uuid-runtime:mipsel mesa-vulkan-drivers:mipsel
  | vulkan-icd:mipsel libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl
  | libyaml-syck-perl libmail-sendmail-perl ca-certificates
  libqt5opengl5-dev:mipsel
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu
  bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config
  crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism
  dpkg-cross dwz file fontconfig fontconfig-config fonts-dejavu-core
  g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel
  gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu
  gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base
  groff-base intltool-debian iso-codes libarchive-zip-perl libatomic1:mipsel
  libatomic1-mipsel-cross libavahi-client3 libavahi-client3:mipsel
  libavahi-common-data libavahi-common-data:mipsel libavahi-common3
  libavahi-common3:mipsel libblkid1:mipsel libbrotli1 libbrotli1:mipsel
  libbsd0 libbsd0:mipsel libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross
  libc6-mipsel-cross libcap2:mipsel libcap2-bin libclang1-14
  libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl
  libcrypt-dev:mipsel libcrypt1:mipsel libcups2 libcups2:mipsel libdbus-1-3
  libdbus-1-3:mipsel libdebhelper-perl libdebian-dpkgcross-perl
  libdouble-conversion3 libdouble-conversion3:mipsel libdrm-amdgpu1
  libdrm-amdgpu1:mipsel libdrm-common libdrm-intel1 libdrm-nouveau2
  libdrm-nouveau2:mipsel libdrm-radeon1 libdrm-radeon1:mipsel libdrm2
  libdrm2:mipsel libdw1 libedit2 libedit2:mipsel libegl-dev:mipsel
  libegl-mesa0 libegl-mesa0:mipsel libegl1 libegl1:mipsel libelf1
  libelf1:mipsel libevdev2 libevdev2:mipsel libexpat1 libexpat1:mipsel
  libffi8:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfontconfig1:mipsel libfreetype6
  libfreetype6:mipsel libgbm1 libgbm1:mipsel libgcc-11-dev:mipsel
  libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross
  libgcrypt20:mipsel libgl-dev:mipsel libgl1 libgl1:mipsel libgl1-mesa-dri
  libgl1-mesa-dri:mipsel libglapi-mesa libglapi-mesa:mipsel libglib2.0-0
  libglib2.0-0:mipsel libglu1-mesa:mipsel libglu1-mesa-dev:mipsel libglvnd0
  libglvnd0:mipsel libglx-dev:mipsel libglx-mesa0 libglx-mesa0:mipsel libglx0
  libglx0:mipsel libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel
  libgomp1-mipsel-cross libgpg-error0:mipsel libgraphite2-3
  libgraphite2-3:mipsel libgssapi-krb5-2:mipsel libgstreamer-plugins-base1.0-0
  libgstreamer1.0-0 libgudev-1.0-0 libgudev-1.0-0:mipsel libharfbuzz0b
  libharfbuzz0b:mipsel libhogweed6:mipsel libhyphen0 libice6 libice6:mipsel
  libicu72 libicu72:mipsel libidn2-0:mipsel libinput-bin libinput10
  libinput10:mipsel libio-string-perl libjpeg62-turbo libjpeg62-turbo:mipsel
  libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel
  libkrb5support0:mipsel libllvm14 libllvm15 libllvm15:mipsel
  liblocale-gettext-perl liblz4-1:mipsel liblzma5:mipsel libmagic-mgc
  libmagic1 libmd0:mipsel libmd4c0 libmd4c0:mipsel libmount1:mipsel libmtdev1
  libmtdev1:mipsel libncursesw6 libnettle8:mipsel libnsl-dev:mipsel
  libnsl2:mipsel libopengl-dev:mipsel libopengl0:mipsel liborc-0.4-0
  libp11-kit0:mipsel libpciaccess0 libpcre2-16-0 libpcre2-16-0:mipsel
  libpcre2-8-0:mipsel libpipeline1 libpng16-16 libpng16-16:mipsel
  libpthread-stubs0-dev:mipsel libpython3-stdlib libpython3.11-minimal
  libpython3.11-stdlib libqt5concurrent5:mipsel libqt5core5a
  libqt5core5a:mipsel libqt5dbus5 libqt5dbus5:mipsel libqt5designer5
  libqt5designercomponents5 libqt5gui5 libqt5gui5:mipsel libqt5help5
  libqt5network5 libqt5network5:mipsel libqt5positioning5 libqt5printsupport5
  libqt5printsupport5:mipsel libqt5qml5 libqt5qmlmodels5 libqt5quick5
  libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5:mipsel
  libqt5sql5-sqlite libqt5test5:mipsel libqt5webchannel5 libqt5webkit5
  libqt5widgets5 libqt5widgets5:mipsel libqt5xml5 libqt5xml5:mipsel
  libreadline8 libselinux1:mipsel libsensors-config libsensors5
  libsensors5:mipsel libsm6 libsm6:mipsel libsqlite3-0 libssl3:mipsel
  libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel
  libstdc++6-mipsel-cross libsub-override-perl libsystemd0:mipsel
  libtasn1-6:mipsel libtinfo6:mipsel libtirpc-dev:mipsel libtirpc3:mipsel
  libtool libuchardet0 libudev1:mipsel libunistring2:mipsel libunwind8
  libuuid1:mipsel libvulkan-dev:mipsel libvulkan1:mipsel libwacom-common
  libwacom9 libwacom9:mipsel libwayland-client0 libwayland-client0:mipsel
  libwayland-server0 libwayland-server0:mipsel libwebp7 libwoff1 libx11-6
  libx11-6:mipsel libx11-data libx11-dev:mipsel libx11-xcb1 libx11-xcb1:mipsel
  libxau-dev:mipsel libxau6 libxau6:mipsel libxcb-dri2-0 libxcb-dri2-0:mipsel
  libxcb-dri3-0 libxcb-dri3-0:mipsel libxcb-glx0 libxcb-glx0:mipsel
  libxcb-icccm4 libxcb-icccm4:mipsel libxcb-image0 libxcb-image0:mipsel
  libxcb-keysyms1 libxcb-keysyms1:mipsel libxcb-present0
  libxcb-present0:mipsel libxcb-randr0 libxcb-randr0:mipsel
  libxcb-render-util0 libxcb-render-util0:mipsel libxcb-render0
  libxcb-render0:mipsel libxcb-shape0 libxcb-shape0:mipsel libxcb-shm0
  libxcb-shm0:mipsel libxcb-sync1 libxcb-sync1:mipsel libxcb-util1
  libxcb-util1:mipsel libxcb-xfixes0 libxcb-xfixes0:mipsel libxcb-xinerama0
  libxcb-xinerama0:mipsel libxcb-xinput0 libxcb-xinput0:mipsel libxcb-xkb1
  libxcb-xkb1:mipsel libxcb1 libxcb1:mipsel libxcb1-dev:mipsel
  libxdmcp-dev:mipsel libxdmcp6 libxdmcp6:mipsel libxext-dev:mipsel libxext6
  libxext6:mipsel libxfixes3 libxfixes3:mipsel libxkbcommon-x11-0
  libxkbcommon-x11-0:mipsel libxkbcommon0 libxkbcommon0:mipsel
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libxml2:mipsel libxrender1
  libxrender1:mipsel libxshmfence1 libxshmfence1:mipsel libxslt1.1 libxxf86vm1
  libxxf86vm1:mipsel libyaml-perl libz3-4 libz3-4:mipsel libzstd1:mipsel
  linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db media-types
  po-debconf python3 python3-minimal python3.11 python3.11-minimal qdoc-qt5
  qhelpgenerator-qt5 qt5-assistant qt5-qmake:mipsel qt5-qmake-bin
  qtattributionsscanner-qt5 qtbase5-dev:mipsel qtbase5-dev-tools qtchooser
  qttools5-dev-tools readline-common sbuild-build-depends-main-dummy:mipsel
  sensible-utils shared-mime-info ucf x11-common x11proto-dev xkb-data
  xorg-sgml-doctools xtrans-dev zlib1g:mipsel
0 upgraded, 362 newly installed, 0 to remove and 0 not upgraded.
Need to get 268 MB of archives.
After this operation, 1162 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB]
Get:3 http://localhost:3142/debian sid/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB]
Get:4 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get:5 http://localhost:3142/debian sid/main amd64 libdw1 amd64 0.188-2.1 [235 kB]
Get:6 http://localhost:3142/debian sid/main amd64 libunwind8 amd64 1.6.2-3 [51.2 kB]
Get:7 http://localhost:3142/debian sid/main amd64 libcap2-bin amd64 1:2.66-4 [34.7 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libgstreamer1.0-0 amd64 1.22.0-2 [1169 kB]
Get:9 http://localhost:3142/debian sid/main amd64 liborc-0.4-0 amd64 1:0.4.33-2 [164 kB]
Get:10 http://localhost:3142/debian sid/main amd64 iso-codes all 4.15.0-1 [2906 kB]
Get:11 http://localhost:3142/debian sid/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.22.0-3 [933 kB]
Get:12 http://localhost:3142/debian sid/main amd64 libhyphen0 amd64 2.8.8-7 [32.5 kB]
Get:13 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get:14 http://localhost:3142/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB]
Get:15 http://localhost:3142/debian sid/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB]
Get:16 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get:17 http://localhost:3142/debian sid/main amd64 shared-mime-info amd64 2.2-1 [729 kB]
Get:18 http://localhost:3142/debian sid/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB]
Get:19 http://localhost:3142/debian sid/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB]
Get:20 http://localhost:3142/debian sid/main amd64 libqt5core5a amd64 5.15.8+dfsg-9 [1808 kB]
Get:21 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
Get:22 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get:23 http://localhost:3142/debian sid/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB]
Get:24 http://localhost:3142/debian sid/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB]
Get:25 http://localhost:3142/debian sid/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB]
Get:27 http://localhost:3142/debian sid/main amd64 fontconfig amd64 2.14.1-4 [449 kB]
Get:28 http://localhost:3142/debian sid/main amd64 libdrm-common all 2.4.114-1 [7112 B]
Get:29 http://localhost:3142/debian sid/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB]
Get:30 http://localhost:3142/debian sid/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB]
Get:31 http://localhost:3142/debian sid/main amd64 libwayland-server0 amd64 1.21.0-1 [35.9 kB]
Get:32 http://localhost:3142/debian sid/main amd64 libgbm1 amd64 22.3.6-1+deb12u1 [38.0 kB]
Get:33 http://localhost:3142/debian sid/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB]
Get:34 http://localhost:3142/debian sid/main amd64 libwayland-client0 amd64 1.21.0-1 [28.3 kB]
Get:35 http://localhost:3142/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libbsd0 amd64 0.11.7-4 [115 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get:38 http://localhost:3142/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB]
Get:39 http://localhost:3142/debian sid/main amd64 libx11-data all 2:1.8.4-2 [292 kB]
Get:40 http://localhost:3142/debian sid/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.4-2 [192 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libxcb-present0 amd64 1.15-1 [105 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB]
Get:47 http://localhost:3142/debian sid/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB]
Get:48 http://localhost:3142/debian sid/main amd64 libxshmfence1 amd64 1.3-1 [8820 B]
Get:49 http://localhost:3142/debian sid/main amd64 libegl-mesa0 amd64 22.3.6-1+deb12u1 [114 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libegl1 amd64 1.6.0-1 [33.7 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB]
Get:52 http://localhost:3142/debian sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB]
Get:53 http://localhost:3142/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get:54 http://localhost:3142/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB]
Get:55 http://localhost:3142/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB]
Get:56 http://localhost:3142/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB]
Get:58 http://localhost:3142/debian sid/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB]
Get:61 http://localhost:3142/debian sid/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB]
Get:62 http://localhost:3142/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB]
Get:63 http://localhost:3142/debian sid/main amd64 libllvm15 amd64 1:15.0.7-4 [23.1 MB]
Get:64 http://localhost:3142/debian sid/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB]
Get:65 http://localhost:3142/debian sid/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB]
Get:66 http://localhost:3142/debian sid/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB]
Get:67 http://localhost:3142/debian sid/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB]
Get:68 http://localhost:3142/debian sid/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB]
Get:69 http://localhost:3142/debian sid/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB]
Get:70 http://localhost:3142/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB]
Get:71 http://localhost:3142/debian sid/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB]
Get:72 http://localhost:3142/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB]
Get:73 http://localhost:3142/debian sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB]
Get:74 http://localhost:3142/debian sid/main amd64 libevdev2 amd64 1.13.0+dfsg-1 [34.0 kB]
Get:75 http://localhost:3142/debian sid/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB]
Get:76 http://localhost:3142/debian sid/main amd64 libgudev-1.0-0 amd64 237-2 [15.1 kB]
Get:77 http://localhost:3142/debian sid/main amd64 libwacom-common all 2.6.0-1 [58.4 kB]
Get:78 http://localhost:3142/debian sid/main amd64 libwacom9 amd64 2.6.0-1 [21.5 kB]
Get:79 http://localhost:3142/debian sid/main amd64 libinput-bin amd64 1.22.1-1 [23.2 kB]
Get:80 http://localhost:3142/debian sid/main amd64 libinput10 amd64 1.22.1-1 [125 kB]
Get:81 http://localhost:3142/debian sid/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB]
Get:82 http://localhost:3142/debian sid/main amd64 libdbus-1-3 amd64 1.14.6-1 [200 kB]
Get:83 http://localhost:3142/debian sid/main amd64 libqt5dbus5 amd64 5.15.8+dfsg-9 [211 kB]
Get:84 http://localhost:3142/debian sid/main amd64 libqt5network5 amd64 5.15.8+dfsg-9 [674 kB]
Get:85 http://localhost:3142/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB]
Get:86 http://localhost:3142/debian sid/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB]
Get:87 http://localhost:3142/debian sid/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB]
Get:88 http://localhost:3142/debian sid/main amd64 libxcb-image0 amd64 0.4.0-2 [22.9 kB]
Get:89 http://localhost:3142/debian sid/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB]
Get:90 http://localhost:3142/debian sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB]
Get:91 http://localhost:3142/debian sid/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB]
Get:92 http://localhost:3142/debian sid/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB]
Get:93 http://localhost:3142/debian sid/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB]
Get:94 http://localhost:3142/debian sid/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB]
Get:95 http://localhost:3142/debian sid/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB]
Get:96 http://localhost:3142/debian sid/main amd64 xkb-data all 2.35.1-1 [764 kB]
Get:97 http://localhost:3142/debian sid/main amd64 libxkbcommon0 amd64 1.5.0-1 [106 kB]
Get:98 http://localhost:3142/debian sid/main amd64 libxkbcommon-x11-0 amd64 1.5.0-1 [15.6 kB]
Get:99 http://localhost:3142/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB]
Get:100 http://localhost:3142/debian sid/main amd64 libqt5gui5 amd64 5.15.8+dfsg-9 [3407 kB]
Get:101 http://localhost:3142/debian sid/main amd64 libqt5positioning5 amd64 5.15.8+dfsg-3 [203 kB]
Get:102 http://localhost:3142/debian sid/main amd64 libavahi-common-data amd64 0.8-10 [107 kB]
Get:103 http://localhost:3142/debian sid/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB]
Get:104 http://localhost:3142/debian sid/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB]
Get:105 http://localhost:3142/debian sid/main amd64 libcups2 amd64 2.4.2-3 [244 kB]
Get:106 http://localhost:3142/debian sid/main amd64 libqt5widgets5 amd64 5.15.8+dfsg-9 [2381 kB]
Get:107 http://localhost:3142/debian sid/main amd64 libqt5printsupport5 amd64 5.15.8+dfsg-9 [201 kB]
Get:108 http://localhost:3142/debian sid/main amd64 libqt5qml5 amd64 5.15.8+dfsg-3 [1356 kB]
Get:109 http://localhost:3142/debian sid/main amd64 libqt5qmlmodels5 amd64 5.15.8+dfsg-3 [189 kB]
Get:110 http://localhost:3142/debian sid/main amd64 libqt5quick5 amd64 5.15.8+dfsg-3 [1592 kB]
Get:111 http://localhost:3142/debian sid/main amd64 libqt5sensors5 amd64 5.15.8-2 [112 kB]
Get:112 http://localhost:3142/debian sid/main amd64 libqt5webchannel5 amd64 5.15.8-2 [58.2 kB]
Get:113 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB]
Get:114 http://localhost:3142/debian sid/main amd64 libwebp7 amd64 1.2.4-0.2 [285 kB]
Get:115 http://localhost:3142/debian sid/main amd64 libwoff1 amd64 1.0.2-2 [43.0 kB]
Get:116 http://localhost:3142/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB]
Get:117 http://localhost:3142/debian sid/main amd64 libqt5webkit5 amd64 5.212.0~alpha4-30 [11.9 MB]
Get:118 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB]
Get:119 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB]
Get:120 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB]
Get:121 http://localhost:3142/debian sid/main amd64 media-types all 10.0.0 [26.1 kB]
Get:122 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4-4 [134 kB]
Get:123 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB]
Get:124 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB]
Get:125 http://localhost:3142/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB]
Get:126 http://localhost:3142/debian sid/main amd64 python3.11 amd64 3.11.2-6 [572 kB]
Get:127 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B]
Get:128 http://localhost:3142/debian sid/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB]
Get:129 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get:130 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get:131 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get:132 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get:133 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get:134 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:135 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get:136 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get:137 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get:138 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get:139 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get:140 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get:141 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB]
Get:142 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:143 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:144 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-12 [495 kB]
Get:145 http://localhost:3142/debian sid/main amd64 binutils-mipsel-linux-gnu amd64 2.40-2cross2 [2795 kB]
Get:146 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu-base amd64 12.2.0-14cross5 [37.7 kB]
Get:147 http://localhost:3142/debian sid/main amd64 cpp-12-mipsel-linux-gnu amd64 12.2.0-14cross5 [8083 kB]
Get:148 http://localhost:3142/debian sid/main amd64 cpp-mipsel-linux-gnu amd64 4:12.2.0-4 [3284 B]
Get:149 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB]
Get:150 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.2.0-14cross5 [33.3 kB]
Get:151 http://localhost:3142/debian sid/main amd64 libc6-mipsel-cross all 2.36-8cross2 [950 kB]
Get:152 http://localhost:3142/debian sid/main amd64 libgcc-s1-mipsel-cross all 12.2.0-14cross5 [46.0 kB]
Get:153 http://localhost:3142/debian sid/main amd64 libgomp1-mipsel-cross all 12.2.0-14cross5 [105 kB]
Get:154 http://localhost:3142/debian sid/main amd64 libatomic1-mipsel-cross all 12.2.0-14cross5 [6476 B]
Get:155 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mipsel-cross all 12.2.0-14cross5 [267 kB]
Get:156 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu amd64 12.2.0-14cross5 [15.9 MB]
Get:157 http://localhost:3142/debian sid/main amd64 gcc-mipsel-linux-gnu amd64 4:12.2.0-4 [1452 B]
Get:158 http://localhost:3142/debian sid/main amd64 libstdc++6-mipsel-cross all 12.2.0-14cross5 [498 kB]
Get:159 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mipsel-cross all 6.1.8-1cross2 [1837 kB]
Get:160 http://localhost:3142/debian sid/main amd64 libc6-dev-mipsel-cross all 2.36-8cross2 [1417 kB]
Get:161 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mipsel-cross all 12.2.0-14cross5 [2033 kB]
Get:162 http://localhost:3142/debian sid/main amd64 g++-12-mipsel-linux-gnu amd64 12.2.0-14cross5 [9009 kB]
Get:163 http://localhost:3142/debian sid/main amd64 g++-mipsel-linux-gnu amd64 4:12.2.0-4 [1176 B]
Get:164 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB]
Get:165 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:166 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:167 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:168 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:169 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB]
Get:170 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB]
Get:171 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB]
Get:172 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB]
Get:173 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:174 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get:175 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB]
Get:176 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB]
Get:177 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B]
Get:178 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get:179 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB]
Get:180 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:181 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:182 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get:183 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:184 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:185 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB]
Get:186 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-12 [1300 kB]
Get:187 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:188 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:189 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB]
Get:190 http://localhost:3142/debian sid/main mipsel gcc-11-base mipsel 11.3.0-14 [39.0 kB]
Get:191 http://localhost:3142/debian sid/main mipsel gcc-12-base mipsel 12.2.0-14 [37.5 kB]
Get:192 http://localhost:3142/debian sid/main mipsel libgcc-s1 mipsel 12.2.0-14 [45.7 kB]
Get:193 http://localhost:3142/debian sid/main mipsel libc6 mipsel 2.36-9 [2266 kB]
Get:194 http://localhost:3142/debian sid/main mipsel libatomic1 mipsel 12.2.0-14 [6700 B]
Get:195 http://localhost:3142/debian sid/main mipsel libavahi-common-data mipsel 0.8-10 [107 kB]
Get:196 http://localhost:3142/debian sid/main mipsel libavahi-common3 mipsel 0.8-10 [40.1 kB]
Get:197 http://localhost:3142/debian sid/main mipsel libcap2 mipsel 1:2.66-4 [25.8 kB]
Get:198 http://localhost:3142/debian sid/main mipsel libgpg-error0 mipsel 1.46-1 [71.9 kB]
Get:199 http://localhost:3142/debian sid/main mipsel libgcrypt20 mipsel 1.10.1-3 [670 kB]
Get:200 http://localhost:3142/debian sid/main mipsel liblz4-1 mipsel 1.9.4-1 [66.6 kB]
Get:201 http://localhost:3142/debian sid/main mipsel liblzma5 mipsel 5.4.1-0.2 [204 kB]
Get:202 http://localhost:3142/debian sid/main mipsel libzstd1 mipsel 1.5.4+dfsg2-5 [284 kB]
Get:203 http://localhost:3142/debian sid/main mipsel libsystemd0 mipsel 252.6-1 [287 kB]
Get:204 http://localhost:3142/debian sid/main mipsel libdbus-1-3 mipsel 1.14.6-1 [176 kB]
Get:205 http://localhost:3142/debian sid/main mipsel libavahi-client3 mipsel 0.8-10 [40.7 kB]
Get:206 http://localhost:3142/debian sid/main mipsel libblkid1 mipsel 2.38.1-5+b1 [139 kB]
Get:207 http://localhost:3142/debian sid/main mipsel libbrotli1 mipsel 1.0.9-2+b6 [295 kB]
Get:208 http://localhost:3142/debian sid/main mipsel libmd0 mipsel 1.0.4-2 [29.9 kB]
Get:209 http://localhost:3142/debian sid/main mipsel libbsd0 mipsel 0.11.7-4 [115 kB]
Get:210 http://localhost:3142/debian sid/main mipsel linux-libc-dev mipsel 6.1.27-1 [1764 kB]
Get:211 http://localhost:3142/debian sid/main mipsel libcrypt1 mipsel 1:4.4.33-2 [113 kB]
Get:212 http://localhost:3142/debian sid/main mipsel libcrypt-dev mipsel 1:4.4.33-2 [144 kB]
Get:213 http://localhost:3142/debian sid/main mipsel libcom-err2 mipsel 1.47.0-2 [19.4 kB]
Get:214 http://localhost:3142/debian sid/main mipsel libkrb5support0 mipsel 1.20.1-2 [31.4 kB]
Get:215 http://localhost:3142/debian sid/main mipsel libk5crypto3 mipsel 1.20.1-2 [83.8 kB]
Get:216 http://localhost:3142/debian sid/main mipsel libkeyutils1 mipsel 1.6.3-2 [8288 B]
Get:217 http://localhost:3142/debian sid/main mipsel libssl3 mipsel 3.0.8-1 [1523 kB]
Get:218 http://localhost:3142/debian sid/main mipsel libkrb5-3 mipsel 1.20.1-2 [303 kB]
Get:219 http://localhost:3142/debian sid/main mipsel libgssapi-krb5-2 mipsel 1.20.1-2 [117 kB]
Get:220 http://localhost:3142/debian sid/main mipsel libtirpc3 mipsel 1.3.3+ds-1 [74.3 kB]
Get:221 http://localhost:3142/debian sid/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB]
Get:222 http://localhost:3142/debian sid/main mipsel libtirpc-dev mipsel 1.3.3+ds-1 [197 kB]
Get:223 http://localhost:3142/debian sid/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB]
Get:224 http://localhost:3142/debian sid/main mipsel libc6-dev mipsel 2.36-9 [1421 kB]
Get:225 http://localhost:3142/debian sid/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB]
Get:226 http://localhost:3142/debian sid/main amd64 libclang1-14 amd64 1:14.0.6-12 [6157 kB]
Get:227 http://localhost:3142/debian sid/main mipsel libgmp10 mipsel 2:6.2.1+dfsg1-1.1 [534 kB]
Get:228 http://localhost:3142/debian sid/main mipsel libnettle8 mipsel 3.8.1-2 [306 kB]
Get:229 http://localhost:3142/debian sid/main mipsel libhogweed6 mipsel 3.8.1-2 [319 kB]
Get:230 http://localhost:3142/debian sid/main mipsel libunistring2 mipsel 1.0-2 [413 kB]
Get:231 http://localhost:3142/debian sid/main mipsel libidn2-0 mipsel 2.3.3-1+b1 [122 kB]
Get:232 http://localhost:3142/debian sid/main mipsel libffi8 mipsel 3.4.4-1 [20.2 kB]
Get:233 http://localhost:3142/debian sid/main mipsel libp11-kit0 mipsel 0.24.1-2 [290 kB]
Get:234 http://localhost:3142/debian sid/main mipsel libtasn1-6 mipsel 4.19.0-2 [53.9 kB]
Get:235 http://localhost:3142/debian sid/main mipsel libgnutls30 mipsel 3.7.9-2 [1231 kB]
Get:236 http://localhost:3142/debian sid/main mipsel zlib1g mipsel 1:1.2.13.dfsg-1 [77.8 kB]
Get:237 http://localhost:3142/debian sid/main mipsel libcups2 mipsel 2.4.2-3 [212 kB]
Get:238 http://localhost:3142/debian sid/main mipsel libstdc++6 mipsel 12.2.0-14 [541 kB]
Get:239 http://localhost:3142/debian sid/main mipsel libdouble-conversion3 mipsel 3.2.1-1 [43.0 kB]
Get:240 http://localhost:3142/debian sid/main mipsel libdrm2 mipsel 2.4.114-1+b1 [34.1 kB]
Get:241 http://localhost:3142/debian sid/main mipsel libdrm-amdgpu1 mipsel 2.4.114-1+b1 [21.3 kB]
Get:242 http://localhost:3142/debian sid/main mipsel libdrm-nouveau2 mipsel 2.4.114-1+b1 [18.9 kB]
Get:243 http://localhost:3142/debian sid/main mipsel libdrm-radeon1 mipsel 2.4.114-1+b1 [21.3 kB]
Get:244 http://localhost:3142/debian sid/main mipsel libtinfo6 mipsel 6.4-4 [321 kB]
Get:245 http://localhost:3142/debian sid/main mipsel libedit2 mipsel 3.1-20221030-2 [83.8 kB]
Get:246 http://localhost:3142/debian sid/main mipsel libglvnd0 mipsel 1.6.0-1 [48.4 kB]
Get:247 http://localhost:3142/debian sid/main mipsel libexpat1 mipsel 2.5.0-1 [94.4 kB]
Get:248 http://localhost:3142/debian sid/main mipsel libwayland-server0 mipsel 1.21.0-1 [32.0 kB]
Get:249 http://localhost:3142/debian sid/main mipsel libgbm1 mipsel 22.3.6-1+deb12u1 [35.4 kB]
Get:250 http://localhost:3142/debian sid/main mipsel libglapi-mesa mipsel 22.3.6-1+deb12u1 [38.5 kB]
Get:251 http://localhost:3142/debian sid/main mipsel libwayland-client0 mipsel 1.21.0-1 [25.7 kB]
Get:252 http://localhost:3142/debian sid/main mipsel libxau6 mipsel 1:1.0.9-1 [19.4 kB]
Get:253 http://localhost:3142/debian sid/main mipsel libxdmcp6 mipsel 1:1.1.2-3 [25.7 kB]
Get:254 http://localhost:3142/debian sid/main mipsel libxcb1 mipsel 1.15-1 [138 kB]
Get:255 http://localhost:3142/debian sid/main mipsel libx11-6 mipsel 2:1.8.4-2 [708 kB]
Get:256 http://localhost:3142/debian sid/main mipsel libx11-xcb1 mipsel 2:1.8.4-2 [192 kB]
Get:257 http://localhost:3142/debian sid/main mipsel libxcb-dri2-0 mipsel 1.15-1 [106 kB]
Get:258 http://localhost:3142/debian sid/main mipsel libxcb-dri3-0 mipsel 1.15-1 [106 kB]
Get:259 http://localhost:3142/debian sid/main mipsel libxcb-present0 mipsel 1.15-1 [105 kB]
Get:260 http://localhost:3142/debian sid/main mipsel libxcb-randr0 mipsel 1.15-1 [114 kB]
Get:261 http://localhost:3142/debian sid/main mipsel libxcb-sync1 mipsel 1.15-1 [108 kB]
Get:262 http://localhost:3142/debian sid/main mipsel libxcb-xfixes0 mipsel 1.15-1 [108 kB]
Get:263 http://localhost:3142/debian sid/main mipsel libxshmfence1 mipsel 1.3-1 [8800 B]
Get:264 http://localhost:3142/debian sid/main mipsel libegl-mesa0 mipsel 22.3.6-1+deb12u1 [101 kB]
Get:265 http://localhost:3142/debian sid/main mipsel libegl1 mipsel 1.6.0-1 [30.9 kB]
Get:266 http://localhost:3142/debian sid/main mipsel libxcb-glx0 mipsel 1.15-1 [118 kB]
Get:267 http://localhost:3142/debian sid/main mipsel libxcb-shm0 mipsel 1.15-1 [105 kB]
Get:268 http://localhost:3142/debian sid/main mipsel libxext6 mipsel 2:1.3.4-1+b1 [49.1 kB]
Get:269 http://localhost:3142/debian sid/main mipsel libxfixes3 mipsel 1:6.0.0-2 [21.6 kB]
Get:270 http://localhost:3142/debian sid/main mipsel libxxf86vm1 mipsel 1:1.1.4-1+b2 [20.3 kB]
Get:271 http://localhost:3142/debian sid/main mipsel libelf1 mipsel 0.188-2.1 [176 kB]
Get:272 http://localhost:3142/debian sid/main mipsel libicu72 mipsel 72.1-3 [9245 kB]
Get:273 http://localhost:3142/debian sid/main mipsel libxml2 mipsel 2.9.14+dfsg-1.2 [599 kB]
Get:274 http://localhost:3142/debian sid/main mipsel libz3-4 mipsel 4.8.12-3.1 [6109 kB]
Get:275 http://localhost:3142/debian sid/main mipsel libllvm15 mipsel 1:15.0.7-4 [20.1 MB]
Get:276 http://localhost:3142/debian sid/main mipsel libsensors5 mipsel 1:3.6.0-7.1 [32.4 kB]
Get:277 http://localhost:3142/debian sid/main mipsel libgl1-mesa-dri mipsel 22.3.6-1+deb12u1 [4734 kB]
Get:278 http://localhost:3142/debian sid/main mipsel libglx-mesa0 mipsel 22.3.6-1+deb12u1 [130 kB]
Get:279 http://localhost:3142/debian sid/main mipsel libglx0 mipsel 1.6.0-1 [26.0 kB]
Get:280 http://localhost:3142/debian sid/main mipsel libgl1 mipsel 1.6.0-1 [84.7 kB]
Get:281 http://localhost:3142/debian sid/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:282 http://localhost:3142/debian sid/main amd64 x11proto-dev all 2022.1-1 [599 kB]
Get:283 http://localhost:3142/debian sid/main mipsel libxau-dev mipsel 1:1.0.9-1 [23.3 kB]
Get:284 http://localhost:3142/debian sid/main mipsel libxdmcp-dev mipsel 1:1.1.2-3 [42.4 kB]
Get:285 http://localhost:3142/debian sid/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get:286 http://localhost:3142/debian sid/main mipsel libpthread-stubs0-dev mipsel 0.4-1 [5340 B]
Get:287 http://localhost:3142/debian sid/main mipsel libxcb1-dev mipsel 1.15-1 [184 kB]
Get:288 http://localhost:3142/debian sid/main mipsel libx11-dev mipsel 2:1.8.4-2 [830 kB]
Get:289 http://localhost:3142/debian sid/main mipsel libglx-dev mipsel 1.6.0-1 [15.3 kB]
Get:290 http://localhost:3142/debian sid/main mipsel libgl-dev mipsel 1.6.0-1 [100 kB]
Get:291 http://localhost:3142/debian sid/main mipsel libegl-dev mipsel 1.6.0-1 [19.1 kB]
Get:292 http://localhost:3142/debian sid/main mipsel libevdev2 mipsel 1.13.0+dfsg-1 [28.8 kB]
Get:293 http://localhost:3142/debian sid/main mipsel libpng16-16 mipsel 1.6.39-2 [267 kB]
Get:294 http://localhost:3142/debian sid/main mipsel libfreetype6 mipsel 2.12.1+dfsg-5 [366 kB]
Get:295 http://localhost:3142/debian sid/main mipsel libfontconfig1 mipsel 2.14.1-4 [381 kB]
Get:296 http://localhost:3142/debian sid/main mipsel libgomp1 mipsel 12.2.0-14 [107 kB]
Get:297 http://localhost:3142/debian sid/main mipsel libgcc-11-dev mipsel 11.3.0-14 [254 kB]
Get:298 http://localhost:3142/debian sid/main mipsel libpcre2-8-0 mipsel 10.42-1 [252 kB]
Get:299 http://localhost:3142/debian sid/main mipsel libselinux1 mipsel 3.4-1+b5 [62.6 kB]
Get:300 http://localhost:3142/debian sid/main mipsel libmount1 mipsel 2.38.1-5+b1 [142 kB]
Get:301 http://localhost:3142/debian sid/main mipsel libglib2.0-0 mipsel 2.74.6-2 [1201 kB]
Get:302 http://localhost:3142/debian sid/main mipsel libopengl0 mipsel 1.6.0-1 [34.2 kB]
Get:303 http://localhost:3142/debian sid/main mipsel libglu1-mesa mipsel 9.0.2-1.1 [178 kB]
Get:304 http://localhost:3142/debian sid/main mipsel libopengl-dev mipsel 1.6.0-1 [4928 B]
Get:305 http://localhost:3142/debian sid/main mipsel libglu1-mesa-dev mipsel 9.0.2-1.1 [232 kB]
Get:306 http://localhost:3142/debian sid/main mipsel libgraphite2-3 mipsel 1.3.14-1 [76.9 kB]
Get:307 http://localhost:3142/debian sid/main mipsel libudev1 mipsel 252.6-1 [99.4 kB]
Get:308 http://localhost:3142/debian sid/main mipsel libgudev-1.0-0 mipsel 237-2 [12.7 kB]
Get:309 http://localhost:3142/debian sid/main mipsel libharfbuzz0b mipsel 6.0.0+dfsg-3 [1918 kB]
Get:310 http://localhost:3142/debian sid/main mipsel libice6 mipsel 2:1.0.10-1 [52.9 kB]
Get:311 http://localhost:3142/debian sid/main mipsel libmtdev1 mipsel 1.1.6-1 [22.6 kB]
Get:312 http://localhost:3142/debian sid/main mipsel libwacom9 mipsel 2.6.0-1 [19.4 kB]
Get:313 http://localhost:3142/debian sid/main mipsel libinput10 mipsel 1.22.1-1 [115 kB]
Get:314 http://localhost:3142/debian sid/main mipsel libjpeg62-turbo mipsel 1:2.1.5-2 [147 kB]
Get:315 http://localhost:3142/debian sid/main mipsel libmd4c0 mipsel 0.4.8-1 [42.7 kB]
Get:316 http://localhost:3142/debian sid/main mipsel libpcre2-16-0 mipsel 10.42-1 [232 kB]
Get:317 http://localhost:3142/debian sid/main mipsel libqt5core5a mipsel 5.15.8+dfsg-9 [1642 kB]
Get:318 http://localhost:3142/debian sid/main mipsel libqt5concurrent5 mipsel 5.15.8+dfsg-9 [42.4 kB]
Get:319 http://localhost:3142/debian sid/main mipsel libqt5dbus5 mipsel 5.15.8+dfsg-9 [188 kB]
Get:320 http://localhost:3142/debian sid/main amd64 libqt5xml5 amd64 5.15.8+dfsg-9 [121 kB]
Get:321 http://localhost:3142/debian sid/main amd64 libqt5designer5 amd64 5.15.8-2 [2748 kB]
Get:322 http://localhost:3142/debian sid/main amd64 libqt5designercomponents5 amd64 5.15.8-2 [727 kB]
Get:323 http://localhost:3142/debian sid/main mipsel libqt5network5 mipsel 5.15.8+dfsg-9 [585 kB]
Get:324 http://localhost:3142/debian sid/main mipsel libuuid1 mipsel 2.38.1-5+b1 [29.2 kB]
Get:325 http://localhost:3142/debian sid/main mipsel libsm6 mipsel 2:1.2.3-1 [33.2 kB]
Get:326 http://localhost:3142/debian sid/main mipsel libxcb-icccm4 mipsel 0.4.1-1.1 [26.5 kB]
Get:327 http://localhost:3142/debian sid/main mipsel libxcb-util1 mipsel 0.4.0-1+b1 [22.5 kB]
Get:328 http://localhost:3142/debian sid/main mipsel libxcb-image0 mipsel 0.4.0-2 [22.4 kB]
Get:329 http://localhost:3142/debian sid/main mipsel libxcb-keysyms1 mipsel 0.4.0-1+b2 [16.2 kB]
Get:330 http://localhost:3142/debian sid/main mipsel libxcb-render0 mipsel 1.15-1 [113 kB]
Get:331 http://localhost:3142/debian sid/main mipsel libxcb-render-util0 mipsel 0.3.9-1+b1 [18.0 kB]
Get:332 http://localhost:3142/debian sid/main mipsel libxcb-shape0 mipsel 1.15-1 [106 kB]
Get:333 http://localhost:3142/debian sid/main mipsel libxcb-xinerama0 mipsel 1.15-1 [105 kB]
Get:334 http://localhost:3142/debian sid/main mipsel libxcb-xinput0 mipsel 1.15-1 [125 kB]
Get:335 http://localhost:3142/debian sid/main mipsel libxcb-xkb1 mipsel 1.15-1 [125 kB]
Get:336 http://localhost:3142/debian sid/main mipsel libxkbcommon0 mipsel 1.5.0-1 [101 kB]
Get:337 http://localhost:3142/debian sid/main mipsel libxkbcommon-x11-0 mipsel 1.5.0-1 [14.4 kB]
Get:338 http://localhost:3142/debian sid/main mipsel libxrender1 mipsel 1:0.9.10-1.1 [31.3 kB]
Get:339 http://localhost:3142/debian sid/main mipsel libqt5gui5 mipsel 5.15.8+dfsg-9 [2914 kB]
Get:340 http://localhost:3142/debian sid/main amd64 libqt5sql5 amd64 5.15.8+dfsg-9 [122 kB]
Get:341 http://localhost:3142/debian sid/main amd64 libqt5help5 amd64 5.15.8-2 [149 kB]
Get:342 http://localhost:3142/debian sid/main mipsel libqt5widgets5 mipsel 5.15.8+dfsg-9 [2122 kB]
Get:343 http://localhost:3142/debian sid/main mipsel libqt5printsupport5 mipsel 5.15.8+dfsg-9 [184 kB]
Get:344 http://localhost:3142/debian sid/main amd64 libqt5quickwidgets5 amd64 5.15.8+dfsg-3 [39.4 kB]
Get:345 http://localhost:3142/debian sid/main mipsel libqt5sql5 mipsel 5.15.8+dfsg-9 [109 kB]
Get:346 http://localhost:3142/debian sid/main amd64 libqt5sql5-sqlite amd64 5.15.8+dfsg-9 [56.6 kB]
Get:347 http://localhost:3142/debian sid/main mipsel libqt5test5 mipsel 5.15.8+dfsg-9 [139 kB]
Get:348 http://localhost:3142/debian sid/main mipsel libqt5xml5 mipsel 5.15.8+dfsg-9 [112 kB]
Get:349 http://localhost:3142/debian sid/main mipsel libstdc++-11-dev mipsel 11.3.0-14 [1972 kB]
Get:350 http://localhost:3142/debian sid/main mipsel libvulkan1 mipsel 1.3.239.0-1 [101 kB]
Get:351 http://localhost:3142/debian sid/main mipsel libvulkan-dev mipsel 1.3.239.0-1 [1115 kB]
Get:352 http://localhost:3142/debian sid/main mipsel libxext-dev mipsel 2:1.3.4-1+b1 [109 kB]
Get:353 http://localhost:3142/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB]
Get:354 http://localhost:3142/debian sid/main amd64 qdoc-qt5 amd64 5.15.8-2 [589 kB]
Get:355 http://localhost:3142/debian sid/main amd64 qhelpgenerator-qt5 amd64 5.15.8-2 [57.5 kB]
Get:356 http://localhost:3142/debian sid/main amd64 qt5-assistant amd64 5.15.8-2 [349 kB]
Get:357 http://localhost:3142/debian sid/main amd64 qt5-qmake-bin amd64 5.15.8+dfsg-9 [1024 kB]
Get:358 http://localhost:3142/debian sid/main mipsel qt5-qmake mipsel 5.15.8+dfsg-9 [221 kB]
Get:359 http://localhost:3142/debian sid/main amd64 qtattributionsscanner-qt5 amd64 5.15.8-2 [30.7 kB]
Get:360 http://localhost:3142/debian sid/main amd64 qtbase5-dev-tools amd64 5.15.8+dfsg-9 [758 kB]
Get:361 http://localhost:3142/debian sid/main mipsel qtbase5-dev mipsel 5.15.8+dfsg-9 [1121 kB]
Get:362 http://localhost:3142/debian sid/main amd64 qttools5-dev-tools amd64 5.15.8-2 [1029 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 268 MB in 1s (182 MB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 15274 files and directories currently installed.)
Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ...
Unpacking liblocale-gettext-perl (1.07-5) ...
Selecting previously unselected package libglib2.0-0:amd64.
Preparing to unpack .../001-libglib2.0-0_2.74.6-2_amd64.deb ...
Unpacking libglib2.0-0:amd64 (2.74.6-2) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../002-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package libdw1:amd64.
Preparing to unpack .../003-libdw1_0.188-2.1_amd64.deb ...
Unpacking libdw1:amd64 (0.188-2.1) ...
Selecting previously unselected package libunwind8:amd64.
Preparing to unpack .../004-libunwind8_1.6.2-3_amd64.deb ...
Unpacking libunwind8:amd64 (1.6.2-3) ...
Selecting previously unselected package libcap2-bin.
Preparing to unpack .../005-libcap2-bin_1%3a2.66-4_amd64.deb ...
Unpacking libcap2-bin (1:2.66-4) ...
Selecting previously unselected package libgstreamer1.0-0:amd64.
Preparing to unpack .../006-libgstreamer1.0-0_1.22.0-2_amd64.deb ...
Unpacking libgstreamer1.0-0:amd64 (1.22.0-2) ...
Selecting previously unselected package liborc-0.4-0:amd64.
Preparing to unpack .../007-liborc-0.4-0_1%3a0.4.33-2_amd64.deb ...
Unpacking liborc-0.4-0:amd64 (1:0.4.33-2) ...
Selecting previously unselected package iso-codes.
Preparing to unpack .../008-iso-codes_4.15.0-1_all.deb ...
Unpacking iso-codes (4.15.0-1) ...
Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64.
Preparing to unpack .../009-libgstreamer-plugins-base1.0-0_1.22.0-3_amd64.deb ...
Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.22.0-3) ...
Selecting previously unselected package libhyphen0:amd64.
Preparing to unpack .../010-libhyphen0_2.8.8-7_amd64.deb ...
Unpacking libhyphen0:amd64 (2.8.8-7) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../011-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
Preparing to unpack .../012-libjpeg62-turbo_1%3a2.1.5-2_amd64.deb ...
Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2) ...
Selecting previously unselected package libpng16-16:amd64.
Preparing to unpack .../013-libpng16-16_1.6.39-2_amd64.deb ...
Unpacking libpng16-16:amd64 (1.6.39-2) ...
Selecting previously unselected package libxml2:amd64.
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Setting up libsm6:mipsel (2:1.2.3-1) ...
Setting up libxml2:mipsel (2.9.14+dfsg-1.2) ...
Setting up libxcb-dri3-0:mipsel (1.15-1) ...
Setting up libx11-xcb1:mipsel (2:1.8.4-2) ...
Setting up libvulkan-dev:mipsel (1.3.239.0-1) ...
Setting up libhogweed6:mipsel (3.8.1-2) ...
Setting up libxcb1-dev:mipsel (1.15-1) ...
Setting up libxrender1:mipsel (1:0.9.10-1.1) ...
Setting up libssl3:mipsel (3.0.8-1) ...
Setting up libx11-dev:mipsel (2:1.8.4-2) ...
Setting up libxext6:mipsel (2:1.3.4-1+b1) ...
Setting up libsystemd0:mipsel (252.6-1) ...
Setting up libxxf86vm1:mipsel (1:1.1.4-1+b2) ...
Setting up libselinux1:mipsel (3.4-1+b5) ...
Setting up libegl-mesa0:mipsel (22.3.6-1+deb12u1) ...
Setting up libgnutls30:mipsel (3.7.9-2) ...
Setting up libfreetype6:mipsel (2.12.1+dfsg-5) ...
Setting up libxfixes3:mipsel (1:6.0.0-2) ...
Setting up libdbus-1-3:mipsel (1.14.6-1) ...
Setting up libxext-dev:mipsel (2:1.3.4-1+b1) ...
Setting up libmount1:mipsel (2.38.1-5+b1) ...
Setting up libllvm15:mipsel (1:15.0.7-4) ...
Setting up libegl1:mipsel (1.6.0-1) ...
Setting up libkrb5-3:mipsel (1.20.1-2) ...
Setting up libfontconfig1:mipsel (2.14.1-4) ...
Setting up libavahi-client3:mipsel (0.8-10) ...
Setting up libglib2.0-0:mipsel (2.74.6-2) ...
/var/lib/dpkg/info/libglib2.0-0:mipsel.postinst: 42: /usr/lib/mipsel-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error
/var/lib/dpkg/info/libglib2.0-0:mipsel.postinst: 43: /usr/lib/mipsel-linux-gnu/glib-2.0/gio-querymodules: Exec format error
Setting up libgl1-mesa-dri:mipsel (22.3.6-1+deb12u1) ...
Setting up libgssapi-krb5-2:mipsel (1.20.1-2) ...
Setting up libqt5core5a:mipsel (5.15.8+dfsg-9) ...
Setting up libcups2:mipsel (2.4.2-3) ...
Setting up libqt5dbus5:mipsel (5.15.8+dfsg-9) ...
Setting up libharfbuzz0b:mipsel (6.0.0+dfsg-3) ...
Setting up libqt5test5:mipsel (5.15.8+dfsg-9) ...
Setting up libqt5concurrent5:mipsel (5.15.8+dfsg-9) ...
Setting up libgudev-1.0-0:mipsel (237-2) ...
Setting up libtirpc3:mipsel (1.3.3+ds-1) ...
Setting up libglx-mesa0:mipsel (22.3.6-1+deb12u1) ...
Setting up libglx0:mipsel (1.6.0-1) ...
Setting up libwacom9:mipsel (2.6.0-1) ...
Setting up libqt5network5:mipsel (5.15.8+dfsg-9) ...
Setting up libqt5sql5:mipsel (5.15.8+dfsg-9) ...
Setting up libqt5xml5:mipsel (5.15.8+dfsg-9) ...
Setting up libtirpc-dev:mipsel (1.3.3+ds-1) ...
Setting up libgl1:mipsel (1.6.0-1) ...
Setting up libnsl2:mipsel (1.3.0-2) ...
Setting up libglx-dev:mipsel (1.6.0-1) ...
Setting up libgl-dev:mipsel (1.6.0-1) ...
Setting up libinput10:mipsel (1.22.1-1) ...
Setting up libegl-dev:mipsel (1.6.0-1) ...
Setting up libqt5gui5:mipsel (5.15.8+dfsg-9) ...
Setting up libqt5widgets5:mipsel (5.15.8+dfsg-9) ...
Setting up libqt5printsupport5:mipsel (5.15.8+dfsg-9) ...
Setting up libglu1-mesa-dev:mipsel (9.0.2-1.1) ...
Setting up qtbase5-dev:mipsel (5.15.8+dfsg-9) ...
Setting up libnsl-dev:mipsel (1.3.0-2) ...
Setting up libc6-dev:mipsel (2.36-9) ...
Setting up libstdc++-11-dev:mipsel (11.3.0-14) ...
Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (mipsel included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) amd64 (x86_64)
Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.22 g++-11_11.3.0-14 g++-12_12.2.0-14 gcc-11_11.3.0-14 gcc-12_12.2.0-14 libc6-dev_2.36-9 libstdc++-11-dev_11.3.0-14 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-mipsel-cross_12.2.0-14cross5 libstdc++6_12.2.0-14 libstdc++6-mipsel-cross_12.2.0-14cross5 linux-libc-dev_6.1.27-1
Package versions: adduser_3.133 apt_2.6.0 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40-2 binutils-common_2.40-2 binutils-mipsel-linux-gnu_2.40-2cross2 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-11_11.3.0-14 cpp-12_12.2.0-14 cpp-12-mipsel-linux-gnu_12.2.0-14cross5 cpp-mipsel-linux-gnu_4:12.2.0-4 cross-config_2.6.20 crossbuild-essential-mipsel_12.9 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 fontconfig_2.14.1-4 fontconfig-config_2.14.1-4 fonts-dejavu-core_2.37-6 g++_4:12.2.0-3 g++-11_11.3.0-14 g++-12_12.2.0-14 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xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: clustalx
Binary: clustalx
Architecture: any
Version: 2.1+lgpl-9
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>
Homepage: http://www.clustal.org/clustal2/
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/clustalx
Vcs-Git: https://salsa.debian.org/med-team/clustalx.git
Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools
Package-List:
 clustalx deb science optional arch=any
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 6a04d1877358fa582cf4897c5296c45c 15224 clustalx_2.1+lgpl-9.debian.tar.xz

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-----END PGP SIGNATURE-----

gpgv: Signature made Fri Dec  4 22:20:42 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./clustalx_2.1+lgpl-9.dsc: no acceptable signature found
dpkg-source: info: extracting clustalx in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz
dpkg-source: info: unpacking clustalx_2.1+lgpl-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardcode-accessory-file-locations.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying qt5.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-2208c7d7-f47a-4c21-9772-175756fd1ad9
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package clustalx
dpkg-buildpackage: info: source version 2.1+lgpl-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture mipsel
 debian/rules clean
dh clean
   dh_auto_clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f moc_*
dh_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure
	mipsel-linux-gnu-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr
Info: creating stash file /<<PKGBUILDDIR>>/.qmake.stash
# did not found a better way to push hardening flags into Makefile
sed -i -e "s:CFLAGS *= .*:& -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security:" \
       -e "s:CXXFLAGS *= .*:& -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security:" \
       -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a
	make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp
In file included from clustalW/substitutionMatrix/globalmatrix.h:8,
                 from AlignmentParameters.cpp:22:
clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’:
AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter]
   48 | void AlignmentParameters::showEvent(QShowEvent* event)
      |                                     ~~~~~~~~~~~~^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from AlignmentViewerWidget.h:36,
                 from AlignmentViewerWidget.cpp:66:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from AlignmentViewerWidget.cpp:68:
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3,
                 from AlignmentViewerWidget.cpp:63:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’:
AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  588 |             for(i = 0; i < len && i < gapMask->size(); i++)
      |                                   ~~^~~~~~~~~~~~~~~~~
AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’:
AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  645 |             for (i = 0; i < len && i < _secStructMask->size();i++)
      |                                    ~~^~~~~~~~~~~~~~~~~~~~~~~~
AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  652 |             for(i = 0; i < len && i < ssMask.size(); i++)
      |                                   ~~^~~~~~~~~~~~~~~
AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’:
AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter]
  781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event )
      |                                           ~~~~~~~~~~~~~~~^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from AlignmentWidget.h:41,
                 from AlignmentWidget.cpp:49:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’:
AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder]
  170 |     bool blackAndWhite;
      |          ^~~~~~~~~~~~~
AlignmentWidget.h:161:27: warning:   ‘std::vector<QPixmap, std::allocator<QPixmap> >* AlignmentWidget::selectedColoredRes’ [-Wreorder]
  161 |     std::vector<QPixmap>* selectedColoredRes;
      |                           ^~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:65:1: warning:   when initialized here [-Wreorder]
   65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent)
      | ^~~~~~~~~~~~~~~
AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’:
AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  225 |         for(unsigned int j = 0; j < lengthLongestSeq; j++)
      |                                 ~~^~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<QPixmap, std::allocator<QPixmap> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  235 |                 if(code >= 0 && code < conservationPixmaps->size())
      |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<QPixmap, std::allocator<QPixmap> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  268 |                     if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size())
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<QPixmap, std::allocator<QPixmap> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  280 |                     if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size())
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  291 |                     if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j)
      |                                                                 ~~~~~~~~~~~~~~~~~~~~~^~~
AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable]
  215 |     int codeForSpace = clustalw::userParameters->resIndex(
      |         ^~~~~~~~~~~~
AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’:
AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<QPixmap, std::allocator<QPixmap> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  333 |         if(i < secStructPixmaps->size() && i < secStructInfo.size())
      |            ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:344:34: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
  344 |                 fontMetrics.width(secStructInfo[i])/2,
      |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3,
                 from AlignmentWidget.cpp:48:
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here
  110 |     int width(QChar) const;
      |         ^~~~~
AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’:
AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<QPixmap, std::allocator<QPixmap> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  569 |                     if(selectedRes >= selectedColoredRes->size())
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’:
AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  689 |             for(int j = 1; j <= strongGroup.size(); j++)
      |                            ~~^~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  693 |             for(int j = 1; j <= weakGroup.size(); j++)
      |                            ~~^~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  700 |                 if((i + _fRes - 1 < (*alignment)[j].size()) &&
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  701 |                    (i + _fRes - 1 < (*alignment)[_fSeq].size()))
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  725 |                         for(int k = 1; k <= strongGroup.size(); k++)
      |                                        ~~^~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  737 |                         for(int k = 1; k <= weakGroup.size(); k++)
      |                                        ~~^~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  760 |                 for(int k = 1; k <= strongGroup.size(); k++)
      |                                ~~^~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  771 |                     for(int k = 1; k <= weakGroup.size(); k++)
      |                                    ~~^~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D<int>*, ColorParameters*)’:
AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  878 |             if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq))
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’:
AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  927 |                 if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq))
      |                    ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’:
AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
 1039 |         for(int j = 0; j < aminoAcid.size(); j++)
      |                        ~~^~~~~~~~~~~~~~~~~~
AlignmentWidget.cpp:1051:49: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
 1051 |                                fontMetrics.width(currentChar)/2,
      |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here
  110 |     int width(QChar) const;
      |         ^~~~~
AlignmentWidget.cpp:1079:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
 1079 |                            fontMetrics.width(currentChar)/2,
      |                            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here
  110 |     int width(QChar) const;
      |         ^~~~~
AlignmentWidget.cpp:1089:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
 1089 |                            fontMetrics.width(currentChar)/2,
      |                            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here
  110 |     int width(QChar) const;
      |         ^~~~~
AlignmentWidget.cpp:1099:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
 1099 |                            fontMetrics.width(currentChar)/2,
      |                            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here
  110 |     int width(QChar) const;
      |         ^~~~~
AlignmentWidget.cpp:1118:30: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
 1118 |             fontMetrics.width(currentChar)/2,
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here
  110 |     int width(QChar) const;
      |         ^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from AlignOutputFileNames.h:10,
                 from AlignOutputFileNames.cpp:26:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
AlignOutputFileNames.h:106:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  106 |     auto_ptr<clustalw::AlignmentFileNames> outFileNames;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1,
                 from AlignOutputFileNames.cpp:16:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from BootstrapTreeDialog.h:11,
                 from BootstrapTreeDialog.cpp:18:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
BootstrapTreeDialog.h:70:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   70 |     auto_ptr<clustalw::TreeNames> treeFileNames;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1,
                 from BootstrapTreeDialog.cpp:8:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp
ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment]
   74 |             //                     tr("colorrules not found in the parameter file, using\
      |             ^
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HardCodedColorScheme.h:8,
                 from ColorParameters.h:11,
                 from ColorFileXmlParser.h:9,
                 from ColorFileXmlParser.cpp:3:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’:
ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter]
   85 |                             QTreeWidgetItem *parentItem)
      |                             ~~~~~~~~~~~~~~~~~^~~~~~~~~~
ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’:
ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter]
  138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem)
      |                                                                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~
ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’:
ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter]
  175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem)
      |                                                                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HardCodedColorScheme.h:8,
                 from ColorParameters.h:11,
                 from ColorParameters.cpp:1:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’:
ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<residueColors>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  160 |     for(i = 0; i < colorPar.size(); i++)
      |                ~~^~~~~~~~~~~~~~~~~
ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable]
  174 |                     char temp = colorPar[i].consensusConditionList[j].toLatin1();
      |                          ^~~~
ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable]
  157 |     char showRes = res.toLatin1();
      |          ^~~~~~~
ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable]
  158 |     char showCon = consensus.toLatin1();
      |          ^~~~~~~
ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’:
ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<residueColors>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  197 |     for(i = 0; i < colorPar.size(); i++)
      |                ~~^~~~~~~~~~~~~~~~~
ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable]
  211 |                     char temp = colorPar[i].consensusConditionList[j].toLatin1();
      |                          ^~~~
ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable]
  194 |     char showRes = res.toLatin1();
      |          ^~~~~~~
ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable]
  195 |     char showCon = consensus.toLatin1();
      |          ^~~~~~~
ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’:
ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<QString, QColor> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  229 |     for(int i = 0; i < colors.size(); i++)
      |                    ~~^~~~~~~~~~~~~~~
ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’:
ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<QString, QColor> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  238 |     for(int i = 0; i < colors.size(); i++)
      |                    ~~^~~~~~~~~~~~~~~
ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’:
ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<residueColors>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  251 |     if(colorNum > 0 && colorNum - 1 < colorPar.size())
      |                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp
In file included from clustalW/substitutionMatrix/globalmatrix.h:8,
                 from ColumnScoreParams.cpp:23:
clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’:
ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter]
   51 | void ColumnScoreParams::showEvent(QShowEvent* event)
      |                                   ~~~~~~~~~~~~^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HardCodedColorScheme.h:8,
                 from HardCodedColorScheme.cpp:1:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HelpDisplayWidget.h:18,
                 from HelpDisplayWidget.cpp:15:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
HelpDisplayWidget.cpp: In member function ‘std::string* HelpDisplayWidget::loadHelpInformation(char)’:
HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=]
  147 |     catch(ifstream::failure e)
      |                             ^
HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable]
   61 |     int  i, number, nlines;
      |             ^~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp
HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’:
HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  180 |             if(column >= 0 && column < arrayOfHeights->size())
      |                               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  198 |             if(column >= 0 && column < arrayOfHeights->size())
      |                               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
HistogramWidget.cpp:208:47: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
  208 |                             (fontMetrics.width(QString::number(rulerNum))) / 2;
      |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qwidget.h:50,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qframe.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qlabel.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QLabel:1,
                 from HistogramWidget.h:29,
                 from HistogramWidget.cpp:23:
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here
  106 |     int width(const QString &, int len = -1) const;
      |         ^~~~~
HistogramWidget.cpp:241:61: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
  241 |                                           (fontMetrics.width(QString::number(0))) / 2, yPos, boxWidth,
      |                                            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here
  106 |     int width(const QString &, int len = -1) const;
      |         ^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp
In file included from clustalW/substitutionMatrix/globalmatrix.h:8,
                 from LowScoringSegParams.cpp:22:
clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’:
LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter]
   51 | void LowScoringSegParams::showEvent(QShowEvent* event)
      |                                     ~~~~~~~~~~~~^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp
In file included from main.cpp:21:
clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from clustalW/Clustal.h:18,
                 from mainwindow.h:45,
                 from main.cpp:24:
clustalW/fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   42 |         void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
      |                                      ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qbrush.h:52,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpalette.h:46,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qwidget.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QWidget:1,
                 from QTUtility.h:10,
                 from main.cpp:22:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/Clustal.h:20:
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from AlignmentViewerWidget.h:36,
                 from mainwindow.h:37,
                 from mainwindow.cpp:98:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from clustalW/Clustal.h:18,
                 from mainwindow.h:45:
clustalW/fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   42 |         void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
      |                                      ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qdebug.h:54,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborcommon.h:45,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborvalue.h:45,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qcborarray.h:43,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/QtCore:38,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3,
                 from mainwindow.cpp:90:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/Clustal.h:20:
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from mainwindow.cpp:99:
WritePostscriptFile.h:88:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   88 |     auto_ptr<PostscriptFileParams> params;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from mainwindow.cpp:100:
AlignOutputFileNames.h:106:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  106 |     auto_ptr<clustalw::AlignmentFileNames> outFileNames;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from mainwindow.cpp:101:
TreeOutputFileNames.h:73:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   73 |     auto_ptr<clustalw::TreeNames> treeFileNames;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from mainwindow.cpp:102:
BootstrapTreeDialog.h:70:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   70 |     auto_ptr<clustalw::TreeNames> treeFileNames;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’:
mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter]
  198 | void MainWindow::showEvent(QShowEvent* event)
      |                            ~~~~~~~~~~~~^~~~~
mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’:
mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter]
 1454 | void MainWindow::writeViewer1AsPostscript(int type)
      |                                           ~~~~^~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp
In file included from clustalW/substitutionMatrix/globalmatrix.h:8,
                 from PairwiseParams.cpp:23:
clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’:
PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter]
   74 | void PairwiseParams::showEvent(QShowEvent* event)
      |                                ~~~~~~~~~~~~^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from PostscriptFileParams.h:4,
                 from PostscriptFileParams.cpp:1:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HardCodedColorScheme.h:8,
                 from ColorParameters.h:11,
                 from PSPrinter.h:11,
                 from PSPrinter.cpp:20:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’:
PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  207 |                 if(res.isLetter() && resNumber.size() > i - data->firstSeq)
      |                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  307 |                             if(res.isLetter() && resNumber.size() > seq)
      |                                                  ~~~~~~~~~~~~~~~~~^~~~~
PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  421 |                             if(res.isLetter() && resNumber.size() > i)
      |                                                  ~~~~~~~~~~~~~~~~~^~~
PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable]
   55 |     int err;
      |         ^~~
PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable]
   73 |     int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local
      |         ^~~~~~~
PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable]
   74 |     int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local
      |         ^~~~~~~
PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’:
PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector<QString>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  587 |     if(data->nameHeader.size() > ix)
      |        ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’:
PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  730 |     for(i = fr; i <= lr && i < ruler.length(); i++)
      |                            ~~^~~~~~~~~~~~~~~~
PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’:
PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
  789 |     for(i = fr + 1; i <= lr && i < data->histogram->size(); i++)
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable]
  781 |     int psX, psY, curveBottom;
      |              ^~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from SaveSeqFile.h:9,
                 from SaveSeqFile.cpp:23:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from SaveSeqFile.cpp:26:
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1,
                 from SaveSeqFile.cpp:14:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from SeqNameWidget.h:41,
                 from SeqNameWidget.cpp:59:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’:
SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable]
  375 |     QRect redrawRect = event->rect();
      |           ^~~~~~~~~~
SeqNameWidget.cpp: In member function ‘int SeqNameWidget::setMaxNameLength()’:
SeqNameWidget.cpp:443:43: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
  443 |             int length = fontMetrics.width(QString(name.c_str()));
      |                          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/mipsel-linux-gnu/qt5/QtGui/QtGui:26,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QtWidgets:3,
                 from SeqNameWidget.cpp:58:
/usr/include/mipsel-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here
  106 |     int width(const QString &, int len = -1) const;
      |         ^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from TreeOutputFileNames.h:10,
                 from TreeOutputFileNames.cpp:17:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
TreeOutputFileNames.h:73:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   73 |     auto_ptr<clustalw::TreeNames> treeFileNames;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1,
                 from TreeOutputFileNames.cpp:7:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from WritePostscriptFile.h:10,
                 from WritePostscriptFile.cpp:24:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
WritePostscriptFile.h:88:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   88 |     auto_ptr<PostscriptFileParams> params;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71,
                 from /usr/include/mipsel-linux-gnu/qt5/QtCore/qsharedpointer.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qpixmap.h:48,
                 from /usr/include/mipsel-linux-gnu/qt5/QtGui/qicon.h:46,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/qpushbutton.h:44,
                 from /usr/include/mipsel-linux-gnu/qt5/QtWidgets/QPushButton:1,
                 from WritePostscriptFile.cpp:14:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from WritePostscriptFile.cpp:27:
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp
In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/fileInput/../alignment/Alignment.h:42,
                 from clustalW/fileInput/FileReader.h:12,
                 from clustalW/Clustal.h:18,
                 from clustalW/Clustal.cpp:27:
clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   42 |         void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
      |                                      ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/fileInput/FileReader.h:11:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/Clustal.h:20:
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/Clustal.cpp:33:
clustalW/tree/TreeInterface.h:38:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMat(vector<int>* seqWeights,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:57:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   57 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromTree(Alignment* alignPtr,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:102:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  102 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMatNJ(vector<int>* seqWeights,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:108:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  108 |         auto_ptr<AlignmentSteps> getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:133:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  133 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromTreeNJ(Alignment* alignPtr,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:138:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  138 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMatUPGMA(vector<int>* seqWeights,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:142:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  142 |         auto_ptr<AlignmentSteps> generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::string*, bool)’:
clustalW/Clustal.cpp:162:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  162 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::string*)’:
clustalW/Clustal.cpp:837:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  837 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from clustalW/alignment/Alignment.cpp:25:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetProfile1()’:
clustalW/alignment/Alignment.cpp:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   47 |     register int sl;                /* which have  code = gap_pos2  */
      |                  ^~
clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetProfile2()’:
clustalW/alignment/Alignment.cpp:122:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  122 |     register int sl;                /* which have  code = gap_pos2  */
      |                  ^~
clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetAlign()’:
clustalW/alignment/Alignment.cpp:617:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  617 |     register int sl;
      |                  ^~
clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’:
clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable]
 1715 |     SeqArray::iterator posToAddTo = sectionToRealign.begin();
      |                        ^~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from clustalW/alignment/AlignmentOutput.h:24,
                 from clustalW/alignment/AlignmentOutput.cpp:27:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/alignment/AlignmentOutput.h:20:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  512 | bool AlignmentOutput::openExplicitFile(auto_ptr<ofstream>& outFile, string fileName)
      |                                        ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  535 | string AlignmentOutput::openOutputFile(auto_ptr<ofstream>& outFile, string prompt,
      |                                        ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’:
clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
  673 |     catch(VectorOutOfRange e)
      |                            ^
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’:
clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
  868 |     catch(VectorOutOfRange e)
      |                            ^
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’:
clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
 1027 |     catch(VectorOutOfRange e)
      |                            ^
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’:
clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
 1156 |     catch(VectorOutOfRange e)
      |                            ^
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’:
clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
 1445 |     catch(VectorOutOfRange e)
      |                            ^
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’:
clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
 1560 |     catch(VectorOutOfRange e)
      |                            ^
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’:
clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
 2095 |     catch(VectorOutOfRange e)
      |                            ^
clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=]
 2102 |     catch(exception e)
      |                     ^
clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’:
clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=]
 2351 |     catch(VectorOutOfRange e)
      |                            ^
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/ObjectiveScore.h:15,
                 from clustalW/alignment/ObjectiveScore.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp
clustalW/fileInput/FileParser.cpp: In member function ‘void clustalw::FileParser::fillCharTab()’:
clustalW/fileInput/FileParser.cpp:37:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   37 |     register int i;
      |                  ^
clustalW/fileInput/FileParser.cpp:38:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   38 |     register char c;
      |                   ^
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp
In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/fileInput/../alignment/Alignment.h:42,
                 from clustalW/fileInput/FileReader.h:12,
                 from clustalW/fileInput/FileReader.cpp:29:
clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   42 |         void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
      |                                      ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/fileInput/FileReader.h:11:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’:
clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  155 |     auto_ptr<FileParser> fileParser; // Means we dont need to delete it!
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/fileInput/FileReader.cpp: At global scope:
clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  426 | void FileReader::checkInfile(int *nseqs, auto_ptr<FileParser>& fileParser)
      |                                          ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr<clustalw::FileParser>&)’:
clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=]
  555 |     catch(exception ex)
      |                     ^~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp
clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector<clustalw::Sequence> clustalw::MSFFileParser::getSeqRange(int, int, std::string*)’:
clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter]
   34 |     vector<Sequence> MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq)
      |                                                                       ~~~~~~~~^~~~~~~~~~~~
clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector<char>&, std::vector<char>&, std::string&, int&, int)’:
clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter]
  246 | void MSFFileParser::getSecStructure(vector<char>& gapPenaltyMask, vector<char>& secStructMask,
      |                                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter]
  246 | void MSFFileParser::getSecStructure(vector<char>& gapPenaltyMask, vector<char>& secStructMask,
      |                                                                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~
clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter]
  247 |                                     string& secStructName, int &structPenalties, int length)
      |                                     ~~~~~~~~^~~~~~~~~~~~~
clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter]
  247 |                                     string& secStructName, int &structPenalties, int length)
      |                                                                                  ~~~~^~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp
clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)’:
clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter]
  199 |     Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq)
      |                                                    ~~~~~~~~^~~~~~~~~~~~
clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector<char>&, std::vector<char>&, std::string&, int&, int)’:
clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter]
  444 | void PearsonFileParser::getSecStructure(vector<char>& gapPenaltyMask,
      |                                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter]
  445 |                          vector<char>& secStructMask, string& secStructName,
      |                          ~~~~~~~~~~~~~~^~~~~~~~~~~~~
clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter]
  445 |                          vector<char>& secStructMask, string& secStructName,
      |                                                       ~~~~~~~~^~~~~~~~~~~~~
clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter]
  446 |                           int &structPenalties, int length)
      |                                                 ~~~~^~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp
clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector<char>&, std::vector<char>&, std::string&, int&, int)’:
clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter]
  292 | void PIRFileParser::getSecStructure(vector<char>& gapPenaltyMask, vector<char>& secStructMask,
      |                                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter]
  292 | void PIRFileParser::getSecStructure(vector<char>& gapPenaltyMask, vector<char>& secStructMask,
      |                                                                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~
clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter]
  293 |                                     string& secStructName, int &structPenalties, int length)
      |                                     ~~~~~~~~^~~~~~~~~~~~~
clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter]
  293 |                                     string& secStructName, int &structPenalties, int length)
      |                                                                                  ~~~~^~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp
clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector<char>&, std::vector<char>&, std::string&, int&, int)’:
clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter]
  240 | void RSFFileParser::getSecStructure(vector<char>& gapPenaltyMask, vector<char>& secStructMask,
      |                                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp
clustalW/general/ClustalWResources.cpp: In member function ‘std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const’:
clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds]
  106 |     delim[1] = 0;
      |     ~~~~~~~^
clustalW/general/ClustalWResources.cpp:104:10: note: while referencing ‘delim’
  104 |     char delim[1];
      |          ^~~~~
clustalW/general/ClustalWResources.cpp:105:14: warning: writing 2 bytes into a region of size 1 [-Wstringop-overflow=]
  105 |     delim[0] = DIRDELIM;
      |     ~~~~~~~~~^~~~~~~~~~
clustalW/general/ClustalWResources.cpp:104:10: note: destination object ‘delim’ of size 1
  104 |     char delim[1];
      |          ^~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp
In file included from clustalW/general/OutputFile.cpp:9:
clustalW/general/OutputFile.h:26:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   26 |         std::auto_ptr<std::ofstream> file;
      |              ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/general/OutputFile.h:8:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp
In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/general/../alignment/Alignment.h:42,
                 from clustalW/general/Stats.cpp:15:
clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp
clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’:
clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter]
   33 | UserParameters::UserParameters(bool log)
      |                                ~~~~~^~~
clustalW/general/UserParameters.cpp: In member function ‘int clustalw::UserParameters::resIndex(std::string, char)’:
clustalW/general/UserParameters.cpp:475:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  475 |     register int i;
      |                  ^
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp
clustalW/general/Utility.cpp: In member function ‘char* clustalw::Utility::rTrim(char*)’:
clustalW/general/Utility.cpp:53:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 |     register int p;
      |                  ^
clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’:
clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
  251 |    int n;
      |        ^
clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’:
clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter]
  519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj)
      |                               ~~~~~~~~^~~~~~~~~~~~~
clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’:
clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |         fgets(line, MAXLINE, stdin);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~
clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’:
clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  221 |         fgets(line, MAXLINE, stdin);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp
In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/interface/../fileInput/../alignment/Alignment.h:42,
                 from clustalW/interface/../fileInput/FileReader.h:12,
                 from clustalW/interface/../Clustal.h:18,
                 from clustalW/interface/CommandLineParser.h:18,
                 from clustalW/interface/CommandLineParser.cpp:13:
clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   42 |         void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
      |                                      ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/interface/../fileInput/FileReader.h:11:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/interface/../Clustal.h:20:
clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp
In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/interface/../fileInput/../alignment/Alignment.h:42,
                 from clustalW/interface/../fileInput/FileReader.h:12,
                 from clustalW/interface/../Clustal.h:18,
                 from clustalW/interface/InteractiveMenu.h:15,
                 from clustalW/interface/InteractiveMenu.cpp:23:
clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   42 |         void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
      |                                      ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/interface/../fileInput/FileReader.h:11:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/interface/../Clustal.h:20:
clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’:
clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=]
   41 |     catch(bad_alloc)
      |           ^~~~~~~~~
clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’:
clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=]
  520 |                 clustalObj->getHelp('C');
      |                 ~~~~~~~~~~~~~~~~~~~^~~~~
clustalW/interface/InteractiveMenu.cpp:521:13: note: here
  521 |             case 'Q':
      |             ^~~~
clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’:
clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1190 |         system(lin1.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp
In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/multipleAlign/../alignment/Alignment.h:42,
                 from clustalW/multipleAlign/Iteration.h:8,
                 from clustalW/multipleAlign/Iteration.cpp:13:
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from clustalW/multipleAlign/Iteration.cpp:17:
clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMat(vector<int>* seqWeights,
      |         ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/multipleAlign/../tree/TreeInterface.h:17:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   57 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromTree(Alignment* alignPtr,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  102 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMatNJ(vector<int>* seqWeights,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  108 |         auto_ptr<AlignmentSteps> getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  133 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromTreeNJ(Alignment* alignPtr,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  138 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMatUPGMA(vector<int>* seqWeights,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  142 |         auto_ptr<AlignmentSteps> generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’:
clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
  170 |     int count;
      |         ^~~~~
clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  231 |                 tmpnam (buffer);
      |                 ~~~~~~~^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp
In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/multipleAlign/../alignment/Alignment.h:42,
                 from clustalW/multipleAlign/LowScoreSegProfile.h:13,
                 from clustalW/multipleAlign/LowScoreSegProfile.cpp:9:
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp
In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/multipleAlign/../alignment/Alignment.h:42,
                 from clustalW/multipleAlign/ProfileBase.h:14,
                 from clustalW/multipleAlign/MSA.h:10,
                 from clustalW/multipleAlign/MSA.cpp:16:
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector<int>*, clustalw::AlignmentSteps*, int)’:
clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable]
  340 |       int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18
      |           ^~~~~~~~~~~~~~
clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector<int>*, int, std::string)’:
clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter]
  359 |                            string phylipName)
      |                            ~~~~~~~^~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp
In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/multipleAlign/../alignment/Alignment.h:42,
                 from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10,
                 from clustalW/multipleAlign/MyersMillerProfileAlign.h:10,
                 from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10:
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp
In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/multipleAlign/../alignment/Alignment.h:42,
                 from clustalW/multipleAlign/ProfileBase.h:14,
                 from clustalW/multipleAlign/ProfileBase.cpp:9:
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp
In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/multipleAlign/../alignment/Alignment.h:42,
                 from clustalW/multipleAlign/ProfileStandard.h:9,
                 from clustalW/multipleAlign/ProfileStandard.cpp:9:
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp
In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/multipleAlign/../alignment/Alignment.h:42,
                 from clustalW/multipleAlign/ProfileWithSub.h:9,
                 from clustalW/multipleAlign/ProfileWithSub.cpp:9:
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp
In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/pairwise/../alignment/Alignment.h:42,
                 from clustalW/pairwise/PairwiseAlignBase.h:10,
                 from clustalW/pairwise/FastPairwiseAlign.h:9,
                 from clustalW/pairwise/FastPairwiseAlign.cpp:10:
clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp
In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/pairwise/../alignment/Alignment.h:42,
                 from clustalW/pairwise/PairwiseAlignBase.h:10,
                 from clustalW/pairwise/FullPairwiseAlign.h:9,
                 from clustalW/pairwise/FullPairwiseAlign.cpp:9:
clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp
In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15:
clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’:
clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter]
 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType)
      |                               ~~~~^~~~~~~~~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter]
 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType)
      |                                                     ~~~~^~~~~~~~~
clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’:
clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable]
 1657 |     int maxRes;
      |         ^~~~~~
clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’:
clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable]
 1717 |     int maxRes;
      |         ^~~~~~
clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’:
clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized [-Wmaybe-uninitialized]
 1103 |     return (maxRes);
      |                   ^
clustalW/substitutionMatrix/SubMatrix.cpp:998:9: note: ‘n’ was declared here
  998 |     int n, llimit, ulimit;
      |         ^
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp
In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/../alignment/Alignment.h:42,
                 from clustalW/tree/ClusterTree.h:20,
                 from clustalW/tree/ClusterTree.cpp:9:
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from clustalW/tree/ClusterTree.h:23:
clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   26 |         std::auto_ptr<std::ofstream> file;
      |              ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/tree/ClusterTree.h:16:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/ClusterTree.h:70:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   70 |         auto_ptr<clustalw::DistMatrix> quickDistMat;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’:
clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable]
  580 |     int rs = 0, rl = 0;
      |         ^~
clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable]
  580 |     int rs = 0, rl = 0;
      |                 ^~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp
In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/../alignment/Alignment.h:42,
                 from clustalW/tree/ClusterTreeOutput.h:11,
                 from clustalW/tree/ClusterTreeOutput.cpp:9:
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp
clustalW/tree/NJTree.cpp: In member function ‘virtual void clustalw::NJTree::generateTree(clustalw::PhyloTree*, clustalw::DistMatrix*, clustalw::SeqInfo*, std::ofstream*)’:
clustalW/tree/NJTree.cpp:164:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  164 |     register int i;
      |                  ^
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp
In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/../alignment/Alignment.h:42,
                 from clustalW/tree/Tree.h:13,
                 from clustalW/tree/Tree.cpp:10:
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/tree/Tree.h:26:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   26 |         auto_ptr<AlignmentSteps> createSets(int firstSeq, int lastSeq);
      |         ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/tree/Tree.h:15:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/Tree.cpp:278:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  278 | auto_ptr<AlignmentSteps> Tree::createSets(int firstSeq, int lastSeq)
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr<clustalw::AlignmentSteps> clustalw::Tree::createSets(int, int)’:
clustalW/tree/Tree.cpp:280:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  280 |     auto_ptr<AlignmentSteps> progAlignSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp
In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/../alignment/Alignment.h:42,
                 from clustalW/tree/TreeInterface.h:19,
                 from clustalW/tree/TreeInterface.cpp:15:
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/tree/TreeInterface.h:38:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMat(vector<int>* seqWeights,
      |         ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/tree/TreeInterface.h:17:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:57:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   57 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromTree(Alignment* alignPtr,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:102:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  102 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMatNJ(vector<int>* seqWeights,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:108:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  108 |         auto_ptr<AlignmentSteps> getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:133:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  133 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromTreeNJ(Alignment* alignPtr,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:138:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  138 |         auto_ptr<AlignmentSteps> getWeightsAndStepsFromDistMatUPGMA(vector<int>* seqWeights,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.h:142:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  142 |         auto_ptr<AlignmentSteps> generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/tree/ClusterTree.h:23,
                 from clustalW/tree/UnRootedClusterTree.h:8,
                 from clustalW/tree/TreeInterface.cpp:17:
clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   26 |         std::auto_ptr<std::ofstream> file;
      |              ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/ClusterTree.h:70:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   70 |         auto_ptr<clustalw::DistMatrix> quickDistMat;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/tree/TreeInterface.cpp:18:
clustalW/tree/Tree.h:26:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   26 |         auto_ptr<AlignmentSteps> createSets(int firstSeq, int lastSeq);
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/tree/TreeInterface.cpp:23:
clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   22 |         auto_ptr<AlignmentSteps> treeFromDistMatrix(RootedGuideTree* phyloTree,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   31 | auto_ptr<AlignmentSteps>
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  103 | auto_ptr<AlignmentSteps>
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  195 | auto_ptr<AlignmentSteps>
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr<clustalw::AlignmentSteps> clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector<int>*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’:
clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  200 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: At global scope:
clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  208 | auto_ptr<AlignmentSteps>
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr<clustalw::AlignmentSteps> clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector<int>*, int, int, bool*)’:
clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  214 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: At global scope:
clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  439 | auto_ptr<AlignmentSteps>
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr<clustalw::AlignmentSteps> clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector<int>*, int, int, bool*)’:
clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  445 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: At global scope:
clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  485 | auto_ptr<AlignmentSteps>
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr<clustalw::AlignmentSteps> clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector<int>*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’:
clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  490 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: At global scope:
clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  503 | auto_ptr<AlignmentSteps> TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs,
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr<clustalw::AlignmentSteps> clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’:
clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  506 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp
In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/../alignment/Alignment.h:42,
                 from clustalW/tree/ClusterTree.h:20,
                 from clustalW/tree/UnRootedClusterTree.h:8,
                 from clustalW/tree/UnRootedClusterTree.cpp:9:
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from clustalW/tree/ClusterTree.h:23:
clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   26 |         std::auto_ptr<std::ofstream> file;
      |              ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/tree/ClusterTree.h:16:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/ClusterTree.h:70:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   70 |         auto_ptr<clustalw::DistMatrix> quickDistMat;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp
In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/UPGMA/../../alignment/Alignment.h:42,
                 from clustalW/tree/UPGMA/../ClusterTree.h:20,
                 from clustalW/tree/UPGMA/RootedClusterTree.h:8,
                 from clustalW/tree/UPGMA/RootedClusterTree.cpp:9:
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from clustalW/tree/UPGMA/../ClusterTree.h:23:
clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   26 |         std::auto_ptr<std::ofstream> file;
      |              ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/tree/UPGMA/../ClusterTree.h:16:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   70 |         auto_ptr<clustalw::DistMatrix> quickDistMat;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   22 |         auto_ptr<AlignmentSteps> treeFromDistMatrix(RootedGuideTree* phyloTree,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11:
clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   23 |         auto_ptr<AlignmentSteps> generateTree(RootedGuideTree* phyTree,
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   51 |         auto_ptr<AlignmentSteps> progSteps;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   17 | auto_ptr<AlignmentSteps> RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr,
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr<clustalw::AlignmentSteps> clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)’:
clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   21 |     auto_ptr<AlignmentSteps> progSteps;
      |     ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp
In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/UPGMA/../../alignment/Alignment.h:42,
                 from clustalW/tree/UPGMA/RootedGuideTree.h:17,
                 from clustalW/tree/UPGMA/RootedGuideTree.cpp:10:
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp
In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/UPGMA/../../alignment/Alignment.h:42,
                 from clustalW/tree/UPGMA/RootedGuideTree.h:17,
                 from clustalW/tree/UPGMA/RootedTreeOutput.h:15,
                 from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9:
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp
In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/tree/UPGMA/../../alignment/Alignment.h:42,
                 from clustalW/tree/UPGMA/RootedGuideTree.h:17,
                 from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8,
                 from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4:
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   23 |         auto_ptr<AlignmentSteps> generateTree(RootedGuideTree* phyTree,
      |         ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from clustalW/tree/UPGMA/UPGMAAlgorithm.h:10:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   51 |         auto_ptr<AlignmentSteps> progSteps;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   27 | auto_ptr<AlignmentSteps> UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree,
      | ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -dM -E -o moc_predefs.h /usr/lib/mipsel-linux-gnu/qt5/mkspecs/features/data/dummy.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from AlignmentViewerWidget.h:36,
                 from moc_AlignmentViewerWidget.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from AlignmentWidget.h:41,
                 from moc_AlignmentWidget.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from AlignOutputFileNames.h:10,
                 from moc_AlignOutputFileNames.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
AlignOutputFileNames.h:106:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  106 |     auto_ptr<clustalw::AlignmentFileNames> outFileNames;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from moc_AlignOutputFileNames.cpp:9:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from BootstrapTreeDialog.h:11,
                 from moc_BootstrapTreeDialog.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
BootstrapTreeDialog.h:70:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   70 |     auto_ptr<clustalw::TreeNames> treeFileNames;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from moc_BootstrapTreeDialog.cpp:9:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HardCodedColorScheme.h:8,
                 from ColorParameters.h:11,
                 from ColorFileXmlParser.h:9,
                 from moc_ColorFileXmlParser.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HelpDisplayWidget.h:18,
                 from moc_HelpDisplayWidget.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from AlignmentViewerWidget.h:36,
                 from mainwindow.h:37,
                 from moc_mainwindow.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
In file included from clustalW/Clustal.h:18,
                 from mainwindow.h:45:
clustalW/fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   42 |         void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
      |                                      ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from moc_mainwindow.cpp:9:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from clustalW/Clustal.h:20:
clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   68 |         bool openExplicitFile(auto_ptr<ofstream>& outFile, string fileName);
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   69 |         string openOutputFile(auto_ptr<ofstream>& outFile, string prompt, string path,
      |                               ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |         auto_ptr<ofstream> clustalOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   76 |         auto_ptr<ofstream> gcgOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   77 |         auto_ptr<ofstream> nbrfOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   78 |         auto_ptr<ofstream> phylipOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   79 |         auto_ptr<ofstream> gdeOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   80 |         auto_ptr<ofstream> nexusOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   81 |         auto_ptr<ofstream> fastaOutFile;
      |         ^~~~~~~~
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from HardCodedColorScheme.h:8,
                 from ColorParameters.h:11,
                 from PSPrinter.h:11,
                 from moc_PSPrinter.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from SaveSeqFile.h:9,
                 from moc_SaveSeqFile.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from SeqNameWidget.h:41,
                 from moc_SeqNameWidget.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from TreeOutputFileNames.h:10,
                 from moc_TreeOutputFileNames.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
TreeOutputFileNames.h:73:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   73 |     auto_ptr<clustalw::TreeNames> treeFileNames;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from moc_TreeOutputFileNames.cpp:9:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<<PKGBUILDDIR>>/moc_predefs.h -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/clustalW/general -I/<<PKGBUILDDIR>>/clustalW/substitutionMatrix -I/<<PKGBUILDDIR>>/clustalW/alignment -I/<<PKGBUILDDIR>>/clustalW -I/<<PKGBUILDDIR>>/clustalW/fileInput -I/<<PKGBUILDDIR>>/clustalW/interface -I/<<PKGBUILDDIR>>/clustalW/pairwise -I/<<PKGBUILDDIR>>/clustalW/multipleAlign -I/<<PKGBUILDDIR>>/clustalW/tree -I/<<PKGBUILDDIR>>/clustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I/usr/mipsel-linux-gnu/include/c++/12 -I/usr/mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu -I/usr/mipsel-linux-gnu/include/c++/12/backward -I/usr/lib/gcc-cross/mipsel-linux-gnu/12/include -I/usr/mipsel-linux-gnu/include -I/usr/include/mipsel-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp
mipsel-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/mipsel-linux-gnu/qt5 -I/usr/include/mipsel-linux-gnu/qt5/QtWidgets -I/usr/include/mipsel-linux-gnu/qt5/QtGui -I/usr/include/mipsel-linux-gnu/qt5/QtXml -I/usr/include/mipsel-linux-gnu/qt5/QtCore -I. -I/usr/lib/mipsel-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp
In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8,
                 from clustalW/alignment/Alignment.h:42,
                 from ClustalQtParams.h:13,
                 from WritePostscriptFile.h:10,
                 from moc_WritePostscriptFile.cpp:10:
clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   96 |         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
      |                                                              ^~~~~~~~~~~~~~
clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
   97 |         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
      |                                                                  ^~~~~~~~~~~~~~
WritePostscriptFile.h:88:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   88 |     auto_ptr<PostscriptFileParams> params;
      |     ^~~~~~~~
In file included from /usr/mipsel-linux-gnu/include/c++/12/memory:76,
                 from moc_WritePostscriptFile.cpp:9:
/usr/mipsel-linux-gnu/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
   64 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o   /usr/lib/mipsel-linux-gnu/libQt5Widgets.so /usr/lib/mipsel-linux-gnu/libQt5Gui.so /usr/lib/mipsel-linux-gnu/libQt5Xml.so /usr/lib/mipsel-linux-gnu/libQt5Core.so -lGL -lpthread -latomic   
/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)':
./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install --destdir=debian/clustalx/ -a
   dh_install -a
   dh_installdocs -a
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs debian/CHANGELOG.upstream
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installman -a
   dh_installmime -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-9_mipsel.deb'.
dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-9_mipsel.deb'.
 dpkg-genbuildinfo --build=any -O../clustalx_2.1+lgpl-9_mipsel.buildinfo
 dpkg-genchanges --build=any -O../clustalx_2.1+lgpl-9_mipsel.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-05-22T12:48:42Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


clustalx_2.1+lgpl-9_mipsel.changes:
-----------------------------------

Format: 1.8
Date: Fri, 04 Dec 2020 22:57:37 +0100
Source: clustalx
Binary: clustalx clustalx-dbgsym
Built-For-Profiles: cross nocheck
Architecture: mipsel
Version: 2.1+lgpl-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 clustalx   - Multiple alignment of nucleic acid and protein sequences (graphic
Changes:
 clustalx (2.1+lgpl-9) unstable; urgency=medium
 .
   * Standards-Version: 4.5.1 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
   * Set field Upstream-Contact in debian/copyright.
   * Remove obsolete field Contact from debian/upstream/metadata (already present
     in machine-readable debian/copyright).
   * watch file standard 4 (routine-update)
   * No quotet entry in mailcap
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Files:
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/<<BUILDDIR>>/clustalx_2.1+lgpl-9_mipsel.changes.new could not be renamed to /<<BUILDDIR>>/clustalx_2.1+lgpl-9_mipsel.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: clustalx
Binary: clustalx clustalx-dbgsym
Architecture: mipsel
Version: 2.1+lgpl-9
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Mon, 22 May 2023 12:48:42 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
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 autopoint (= 0.21-12),
 autotools-dev (= 20220109.1),
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 binutils-x86-64-linux-gnu (= 2.40-2),
 bsdextrautils (= 2.38.1-5+b1),
 bsdutils (= 1:2.38.1-5+b1),
 build-essential (= 12.9),
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 coreutils (= 9.1-1),
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 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfontconfig1 (= 2.14.1-4),
 libfreetype6 (= 2.12.1+dfsg-5),
 libgbm1 (= 22.3.6-1+deb12u1),
 libgcc-11-dev (= 11.3.0-14),
 libgcc-12-dev (= 12.2.0-14),
 libgcc-s1 (= 12.2.0-14),
 libgcrypt20 (= 1.10.1-3),
 libgdbm-compat4 (= 1.23-3),
 libgdbm6 (= 1.23-3),
 libgl-dev (= 1.6.0-1),
 libgl1 (= 1.6.0-1),
 libgl1-mesa-dri (= 22.3.6-1+deb12u1),
 libglapi-mesa (= 22.3.6-1+deb12u1),
 libglib2.0-0 (= 2.74.6-2),
 libglu1-mesa (= 9.0.2-1.1),
 libglu1-mesa-dev (= 9.0.2-1.1),
 libglvnd0 (= 1.6.0-1),
 libglx-dev (= 1.6.0-1),
 libglx-mesa0 (= 22.3.6-1+deb12u1),
 libglx0 (= 1.6.0-1),
 libgmp10 (= 2:6.2.1+dfsg1-1.1),
 libgnutls30 (= 3.7.9-2),
 libgomp1 (= 12.2.0-14),
 libgpg-error0 (= 1.46-1),
 libgprofng0 (= 2.40-2),
 libgraphite2-3 (= 1.3.14-1),
 libgssapi-krb5-2 (= 1.20.1-2),
 libgstreamer-plugins-base1.0-0 (= 1.22.0-3),
 libgstreamer1.0-0 (= 1.22.0-2),
 libgudev-1.0-0 (= 237-2),
 libharfbuzz0b (= 6.0.0+dfsg-3),
 libhogweed6 (= 3.8.1-2),
 libhyphen0 (= 2.8.8-7),
 libice6 (= 2:1.0.10-1),
 libicu72 (= 72.1-3),
 libidn2-0 (= 2.3.3-1+b1),
 libinput-bin (= 1.22.1-1),
 libinput10 (= 1.22.1-1),
 libisl23 (= 0.25-1),
 libitm1 (= 12.2.0-14),
 libjansson4 (= 2.14-2),
 libjpeg62-turbo (= 1:2.1.5-2),
 libk5crypto3 (= 1.20.1-2),
 libkeyutils1 (= 1.6.3-2),
 libkrb5-3 (= 1.20.1-2),
 libkrb5support0 (= 1.20.1-2),
 libllvm14 (= 1:14.0.6-12),
 libllvm15 (= 1:15.0.7-4),
 liblsan0 (= 12.2.0-14),
 liblz4-1 (= 1.9.4-1),
 liblzma5 (= 5.4.1-0.2),
 libmagic-mgc (= 1:5.44-3),
 libmagic1 (= 1:5.44-3),
 libmd0 (= 1.0.4-2),
 libmd4c0 (= 0.4.8-1),
 libmount1 (= 2.38.1-5+b1),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.0-1),
 libmtdev1 (= 1.1.6-1),
 libncursesw6 (= 6.4-4),
 libnettle8 (= 3.8.1-2),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libnumber-compare-perl (= 0.03-3),
 libopengl-dev (= 1.6.0-1),
 libopengl0 (= 1.6.0-1),
 liborc-0.4-0 (= 1:0.4.33-2),
 libp11-kit0 (= 0.24.1-2),
 libpam-modules (= 1.5.2-6),
 libpam-modules-bin (= 1.5.2-6),
 libpam-runtime (= 1.5.2-6),
 libpam0g (= 1.5.2-6),
 libpciaccess0 (= 0.17-2),
 libpcre2-16-0 (= 10.42-1),
 libpcre2-8-0 (= 10.42-1),
 libperl5.36 (= 5.36.0-7),
 libpipeline1 (= 1.5.7-1),
 libpng16-16 (= 1.6.39-2),
 libpthread-stubs0-dev (= 0.4-1),
 libpython3-stdlib (= 3.11.2-1+b1),
 libpython3.11-minimal (= 3.11.2-6),
 libpython3.11-stdlib (= 3.11.2-6),
 libqt5concurrent5 (= 5.15.8+dfsg-9),
 libqt5core5a (= 5.15.8+dfsg-9),
 libqt5dbus5 (= 5.15.8+dfsg-9),
 libqt5designer5 (= 5.15.8-2),
 libqt5designercomponents5 (= 5.15.8-2),
 libqt5gui5 (= 5.15.8+dfsg-9),
 libqt5help5 (= 5.15.8-2),
 libqt5network5 (= 5.15.8+dfsg-9),
 libqt5positioning5 (= 5.15.8+dfsg-3),
 libqt5printsupport5 (= 5.15.8+dfsg-9),
 libqt5qml5 (= 5.15.8+dfsg-3),
 libqt5qmlmodels5 (= 5.15.8+dfsg-3),
 libqt5quick5 (= 5.15.8+dfsg-3),
 libqt5quickwidgets5 (= 5.15.8+dfsg-3),
 libqt5sensors5 (= 5.15.8-2),
 libqt5sql5 (= 5.15.8+dfsg-9),
 libqt5sql5-sqlite (= 5.15.8+dfsg-9),
 libqt5test5 (= 5.15.8+dfsg-9),
 libqt5webchannel5 (= 5.15.8-2),
 libqt5webkit5 (= 5.212.0~alpha4-30),
 libqt5widgets5 (= 5.15.8+dfsg-9),
 libqt5xml5 (= 5.15.8+dfsg-9),
 libquadmath0 (= 12.2.0-14),
 libreadline8 (= 8.2-1.3),
 libseccomp2 (= 2.5.4-1+b3),
 libselinux1 (= 3.4-1+b5),
 libsensors-config (= 1:3.6.0-7.1),
 libsensors5 (= 1:3.6.0-7.1),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.38.1-5+b1),
 libsqlite3-0 (= 3.40.1-2),
 libssl3 (= 3.0.8-1),
 libstdc++-12-dev (= 12.2.0-14),
 libstdc++6 (= 12.2.0-14),
 libsub-override-perl (= 0.09-4),
 libsystemd0 (= 252.6-1),
 libtasn1-6 (= 4.19.0-2),
 libtext-glob-perl (= 0.11-3),
 libtinfo6 (= 6.4-4),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtool (= 2.4.7-5),
 libtsan0 (= 11.3.0-14),
 libtsan2 (= 12.2.0-14),
 libubsan1 (= 12.2.0-14),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 252.6-1),
 libunistring2 (= 1.0-2),
 libunwind8 (= 1.6.2-3),
 libuuid1 (= 2.38.1-5+b1),
 libvulkan-dev (= 1.3.239.0-1),
 libvulkan1 (= 1.3.239.0-1),
 libwacom-common (= 2.6.0-1),
 libwacom9 (= 2.6.0-1),
 libwayland-client0 (= 1.21.0-1),
 libwayland-server0 (= 1.21.0-1),
 libwebp7 (= 1.2.4-0.2),
 libwoff1 (= 1.0.2-2),
 libx11-6 (= 2:1.8.4-2),
 libx11-data (= 2:1.8.4-2),
 libx11-dev (= 2:1.8.4-2),
 libx11-xcb1 (= 2:1.8.4-2),
 libxau-dev (= 1:1.0.9-1),
 libxau6 (= 1:1.0.9-1),
 libxcb-dri2-0 (= 1.15-1),
 libxcb-dri3-0 (= 1.15-1),
 libxcb-glx0 (= 1.15-1),
 libxcb-icccm4 (= 0.4.1-1.1),
 libxcb-image0 (= 0.4.0-2),
 libxcb-keysyms1 (= 0.4.0-1+b2),
 libxcb-present0 (= 1.15-1),
 libxcb-randr0 (= 1.15-1),
 libxcb-render-util0 (= 0.3.9-1+b1),
 libxcb-render0 (= 1.15-1),
 libxcb-shape0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb-sync1 (= 1.15-1),
 libxcb-util1 (= 0.4.0-1+b1),
 libxcb-xfixes0 (= 1.15-1),
 libxcb-xinerama0 (= 1.15-1),
 libxcb-xinput0 (= 1.15-1),
 libxcb-xkb1 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxcb1-dev (= 1.15-1),
 libxdmcp-dev (= 1:1.1.2-3),
 libxdmcp6 (= 1:1.1.2-3),
 libxext-dev (= 2:1.3.4-1+b1),
 libxext6 (= 2:1.3.4-1+b1),
 libxfixes3 (= 1:6.0.0-2),
 libxkbcommon-x11-0 (= 1.5.0-1),
 libxkbcommon0 (= 1.5.0-1),
 libxml2 (= 2.9.14+dfsg-1.2),
 libxrender1 (= 1:0.9.10-1.1),
 libxshmfence1 (= 1.3-1),
 libxslt1.1 (= 1.1.35-1),
 libxxf86vm1 (= 1:1.1.4-1+b2),
 libz3-4 (= 4.8.12-3.1),
 libzstd1 (= 1.5.4+dfsg2-5),
 linux-libc-dev (= 6.1.27-1),
 login (= 1:4.13+dfsg1-1+b1),
 m4 (= 1.4.19-3),
 make (= 4.3-4.1),
 man-db (= 2.11.2-2),
 mawk (= 1.3.4.20200120-3.1),
 media-types (= 10.0.0),
 ncurses-base (= 6.4-4),
 ncurses-bin (= 6.4-4),
 patch (= 2.7.6-7),
 perl (= 5.36.0-7),
 perl-base (= 5.36.0-7),
 perl-modules-5.36 (= 5.36.0-7),
 po-debconf (= 1.0.21+nmu1),
 python3 (= 3.11.2-1+b1),
 python3-minimal (= 3.11.2-1+b1),
 python3.11 (= 3.11.2-6),
 python3.11-minimal (= 3.11.2-6),
 qdoc-qt5 (= 5.15.8-2),
 qhelpgenerator-qt5 (= 5.15.8-2),
 qt5-assistant (= 5.15.8-2),
 qt5-qmake (= 5.15.8+dfsg-9),
 qt5-qmake-bin (= 5.15.8+dfsg-9),
 qtattributionsscanner-qt5 (= 5.15.8-2),
 qtbase5-dev (= 5.15.8+dfsg-9),
 qtbase5-dev-tools (= 5.15.8+dfsg-9),
 qtchooser (= 66-2),
 qttools5-dev-tools (= 5.15.8-2),
 readline-common (= 8.2-1.3),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-1),
 sensible-utils (= 0.0.17+nmu1),
 shared-mime-info (= 2.2-1),
 sysvinit-utils (= 3.06-4),
 tar (= 1.34+dfsg-1.2),
 usrmerge (= 35),
 util-linux (= 2.38.1-5+b1),
 util-linux-extra (= 2.38.1-5+b1),
 x11-common (= 1:7.7+23),
 x11proto-dev (= 2022.1-1),
 xkb-data (= 2.35.1-1),
 xorg-sgml-doctools (= 1:1.11-1.1),
 xtrans-dev (= 1.4.0-1),
 xz-utils (= 5.4.1-0.2),
 zlib1g (= 1:1.2.13.dfsg-1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 SOURCE_DATE_EPOCH="1607119057"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


clustalx-dbgsym_2.1+lgpl-9_mipsel.deb
-------------------------------------

 new Debian package, version 2.0.
 size 9342828 bytes: control archive=540 bytes.
     382 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: clustalx-dbgsym
 Source: clustalx
 Version: 2.1+lgpl-9
 Auto-Built-Package: debug-symbols
 Architecture: mipsel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9328
 Depends: clustalx (= 2.1+lgpl-9)
 Section: debug
 Priority: optional
 Description: debug symbols for clustalx
 Build-Ids: c06082535f14843959efed5375b1f6c9221ff787

drwxr-xr-x root/root         0 2020-12-04 21:57 ./
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/lib/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root   9541256 2020-12-04 21:57 ./usr/lib/debug/.build-id/c0/6082535f14843959efed5375b1f6c9221ff787.debug
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-12-04 21:57 ./usr/share/doc/clustalx-dbgsym -> clustalx


clustalx_2.1+lgpl-9_mipsel.deb
------------------------------

 new Debian package, version 2.0.
 size 400680 bytes: control archive=1456 bytes.
    1548 bytes,    27 lines      control              
     874 bytes,    13 lines      md5sums              
 Package: clustalx
 Version: 2.1+lgpl-9
 Architecture: mipsel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1644
 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 11)
 Suggests: clustalw, texlive-latex-extra, boxshade
 Section: science
 Priority: optional
 Homepage: http://www.clustal.org/clustal2/
 Description: Multiple alignment of nucleic acid and protein sequences (graphical interface)
  This package offers a GUI interface for the Clustal multiple sequence
  alignment program. It provides an integrated environment for performing
  multiple sequence- and profile-alignments to analyse the results.
  The sequence alignment is displayed in a window on the screen.
  A versatile coloring scheme has been incorporated to highlight conserved
  features in the alignment. For professional presentations, one should
  use the texshade LaTeX package or boxshade.
  .
  The pull-down menus at the top of the window allow you to select all the
  options required for traditional multiple sequence and profile alignment.
  You can cut-and-paste sequences to change the order of the alignment; you can
  select a subset of sequences to be aligned; you can select a sub-range of the
  alignment to be realigned and inserted back into the original alignment.
  .
  An alignment quality analysis can be performed and low-scoring segments or
  exceptional residues can be highlighted.

drwxr-xr-x root/root         0 2020-12-04 21:57 ./
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/bin/
-rwxr-xr-x root/root   1576856 2020-12-04 21:57 ./usr/bin/clustalx
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/lib/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/lib/mime/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/lib/mime/packages/
-rw-r--r-- root/root       112 2020-12-04 21:57 ./usr/lib/mime/packages/clustalx
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/applications/
-rw-r--r-- root/root       876 2020-12-04 21:57 ./usr/share/applications/clustalx.desktop
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/clustalx/
-rw-r--r-- root/root     69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp
-rw-r--r-- root/root       847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml
-rw-r--r-- root/root      1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml
-rw-r--r-- root/root      5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/doc/clustalx/
-rw-r--r-- root/root       410 2020-12-04 21:57 ./usr/share/doc/clustalx/README.Debian
-rw-r--r-- root/root       790 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.Debian.gz
-rw-r--r-- root/root      3440 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.gz
-rw-r--r-- root/root      1860 2020-12-04 21:57 ./usr/share/doc/clustalx/copyright
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/man/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/man/man1/
-rw-r--r-- root/root       797 2020-12-04 21:57 ./usr/share/man/man1/clustalx.1.gz
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/mime/
drwxr-xr-x root/root         0 2020-12-04 21:57 ./usr/share/mime/packages/
-rw-r--r-- root/root       513 2020-12-04 21:57 ./usr/share/mime/packages/clustalx.xml


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [963 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [550 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [638 B]
Fetched 2151 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  ca-certificates diffstat gpg gpgconf libaliased-perl libapt-pkg-perl
  libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl
  libclass-data-inheritable-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl
  libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl
  libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl
  libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl
  libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl
  libiterator-perl libiterator-util-perl libjson-maybexs-perl
  liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
  libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl
  libparams-util-perl libpath-tiny-perl libperlio-gzip-perl
  libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl
  libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl
  libsereal-encoder-perl libsort-versions-perl libstrictures-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2
  libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip t1utils unzip
Suggested packages:
  libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl
  libscalar-number-perl libbareword-filehandles-perl libindirect-perl
  libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl
  binutils-multiarch libtext-template-perl zip
Recommended packages:
  gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl
  libfreezethaw-perl libmath-base85-perl libsocket6-perl
  libpackage-stash-xs-perl libxstring-perl libdata-dump-perl
  libhttp-daemon-perl libmailtools-perl
The following NEW packages will be installed:
  ca-certificates diffstat gpg gpgconf libaliased-perl libapt-pkg-perl
  libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl
  libclass-data-inheritable-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl
  libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl
  libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl
  libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl
  libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl
  libiterator-perl libiterator-util-perl libjson-maybexs-perl
  liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
  libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl
  libparams-util-perl libpath-tiny-perl libperlio-gzip-perl
  libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl
  libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl
  libsereal-encoder-perl libsort-versions-perl libstrictures-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2
  libyaml-libyaml-perl lintian lzop netbase openssl patchutils
  perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:mipsel
  t1utils unzip
0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded.
Need to get 9737 kB of archives.
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Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB]
Get:3 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.8-1 [1407 kB]
Get:4 http://localhost:3142/debian sid/main amd64 ca-certificates all 20230311 [153 kB]
Get:5 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB]
Get:6 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB]
Get:7 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1 [564 kB]
Get:8 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1 [949 kB]
Get:9 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:10 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB]
Get:11 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB]
Get:12 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:13 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB]
Get:14 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB]
Get:15 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:16 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:17 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:18 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:19 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB]
Get:20 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:21 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB]
Get:22 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get:23 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get:24 http://localhost:3142/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:25 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.17-1 [90.4 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB]
Get:27 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.55-1 [220 kB]
Get:28 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:29 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB]
Get:30 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB]
Get:31 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB]
Get:32 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.28-2 [16.4 kB]
Get:33 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB]
Get:34 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:35 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.989-1 [50.5 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:38 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.35-1 [131 kB]
Get:39 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:40 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-2 [43.6 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB]
Get:47 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:48 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB]
Get:49 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB]
Get:52 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB]
Get:53 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB]
Get:54 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:55 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:56 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:58 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:61 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:62 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:63 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB]
Get:64 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB]
Get:65 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:66 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:67 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:68 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:69 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B]
Get:70 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB]
Get:71 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB]
Get:72 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB]
Get:73 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get:74 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:75 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.68-1 [186 kB]
Get:76 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:77 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:78 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB]
Get:79 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB]
Get:80 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB]
Get:81 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:82 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:83 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:84 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-5 [37.7 kB]
Get:85 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB]
Get:86 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB]
Get:87 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:88 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:89 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:90 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:91 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:92 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:93 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB]
Get:94 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:95 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB]
Get:96 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB]
Get:97 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:98 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB]
Get:99 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB]
Get:100 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB]
Get:101 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB]
Get:102 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:103 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.003+ds-1 [99.5 kB]
Get:104 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.003+ds-1 [102 kB]
Get:105 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:106 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.33-1 [58.4 kB]
Get:107 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.28-1 [28.6 kB]
Get:108 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB]
Get:109 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B]
Get:110 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB]
Get:111 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB]
Get:112 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:113 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB]
Get:114 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB]
Get:115 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.16-1 [116 kB]
Get:116 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB]
Get:117 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB]
Get:118 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-5 [61.9 kB]
Get:119 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:120 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:121 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:122 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB]
Get:123 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB]
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Selecting previously unselected package libproc-processtable-perl:amd64.
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Selecting previously unselected package libregexp-wildcards-perl.
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Setting up libapt-pkg-perl (0.1.40+b2) ...
Setting up liblz1:amd64 (1.13-5) ...
Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ...
Setting up plzip (1.10-5) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
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Setting up libmouse-perl (2.5.10-1+b3) ...
Setting up libdata-messagepack-perl (1.02-1+b1) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libclass-method-modifiers-perl (2.14-1) ...
Setting up liblist-compare-perl (0.55-2) ...
Setting up libclone-perl:amd64 (0.46-1) ...
Setting up libyaml-0-2:amd64 (0.2.5-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.35-1) ...
Setting up libhtml-tagset-perl (3.20-6) ...
Setting up libdevel-size-perl (0.83-2+b1) ...
Setting up unzip (6.0-28) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.86+ds-1) ...
Setting up libio-interactive-perl (1.023-2) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up perl-openssl-defaults:amd64 (7+b1) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up liblzo2-2:amd64 (2.10-2) ...
Setting up libtime-moment-perl (0.44-2+b1) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libassuan0:amd64 (2.5.5-5) ...
Setting up libconfig-tiny-perl (2.28-2) ...
Setting up libsereal-encoder-perl (5.003+ds-1) ...
Setting up liblist-utilsby-perl (0.12-2) ...
Setting up libnet-netmask-perl (2.0002-2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up patchutils (0.4.2-1) ...
Setting up libjson-maybexs-perl (1.004004-1) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ...
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libxs-parse-keyword-perl (0.33-1) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-3) ...
Setting up libperlio-utf8-strict-perl (0.010-1) ...
Setting up t1utils (1.41-4) ...
Setting up diffstat (1.65-1) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.48-2) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libregexp-ipv6-perl (0.03-3) ...
Setting up libsub-name-perl:amd64 (0.26-2+b1) ...
Setting up libsyntax-keyword-try-perl (0.28-1) ...
Setting up libdata-validate-domain-perl (0.10-1.1) ...
Setting up libproc-processtable-perl:amd64 (0.634-1+b2) ...
Setting up libpath-tiny-perl (0.144-1) ...
Setting up lzop (1.04-2) ...
Setting up gpgconf (2.2.40-1.1) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.048-3) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up netbase (6.4) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up libclass-xsaccessor-perl (1.19-4+b1) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libterm-readkey-perl (2.38-2+b1) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.0.8-1) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b1) ...
Setting up libperlio-gzip-perl (0.20-1+b1) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.003+ds-1) ...
Setting up libmarkdown2:amd64 (2.2.7-2) ...
Setting up liburi-perl (5.17-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up gpg (2.2.40-1.1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b1) ...
Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.15-1) ...
Setting up libnet-http-perl (6.22-1) ...
Setting up libtext-markdown-discount-perl (0.16-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.008-2) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libdata-validate-uri-perl (0.07-2) ...
Setting up libdata-optlist-perl (0.113-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libhtml-parser-perl:amd64 (3.81-1) ...
Setting up libio-socket-ssl-perl (2.081-2) ...
Setting up libsub-exporter-perl (0.989-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libhtml-form-perl (6.11-1) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b1) ...
Setting up libcgi-pm-perl (4.55-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.58-2) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-perl (6.68-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.16-1) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up lintian (2.116.3) ...
Setting up sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 128580
Build-Time: 222
Distribution: unstable
Foreign Architectures: mipsel
Host Architecture: mipsel
Install-Time: 27
Job: clustalx_2.1+lgpl-9
Lintian: pass
Machine Architecture: amd64
Package: clustalx
Package-Time: 259
Source-Version: 2.1+lgpl-9
Space: 128580
Status: successful
Version: 2.1+lgpl-9
--------------------------------------------------------------------------------
Finished at 2023-05-22T12:48:42Z
Build needed 00:04:19, 128580k disk space