sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | clustalx 2.1+lgpl-9 (s390x) Tue, 01 Jul 2025 18:37:21 +0000 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-9 Source Version: 2.1+lgpl-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-0d286ac3-aa6e-478c-93c1-6b2809967957' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-Aisp4y/resolver-zjcUUP' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [213 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/main Sources T-2025-07-01-1404.57-F-2025-07-01-0204.41.pdiff [5564 B] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-07-01-1404.57-F-2025-07-01-1404.57.pdiff [380 B] Get:5 http://localhost:3142/debian unstable/main Sources T-2025-07-01-1404.57-F-2025-07-01-0204.41.pdiff [5564 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-07-01-1404.57-F-2025-07-01-0204.41.pdiff [3525 B] Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-07-01-1404.57-F-2025-07-01-1404.57.pdiff [380 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-07-01-1404.57-F-2025-07-01-0204.41.pdiff [3525 B] Get:8 http://localhost:3142/debian unstable/main s390x Packages [9696 kB] Fetched 10.1 MB in 3s (3941 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'clustalx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/clustalx.git Please use: git clone https://salsa.debian.org/med-team/clustalx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 359 kB of source archives. Get:1 http://localhost:3142/debian unstable/main clustalx 2.1+lgpl-9 (dsc) [2084 B] Get:2 http://localhost:3142/debian unstable/main clustalx 2.1+lgpl-9 (tar) [342 kB] Get:3 http://localhost:3142/debian unstable/main clustalx 2.1+lgpl-9 (diff) [15.2 kB] Fetched 359 kB in 1s (602 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/clustalx-Aisp4y/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-Aisp4y' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [766 B] Get:5 copy:/<>/apt_archive ./ Packages [809 B] Fetched 2184 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc-14-base:s390x gcc-14-cross-base gcc-14-s390x-linux-gnu gcc-14-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libavahi-client3 libavahi-client3:s390x libavahi-common-data libavahi-common-data:s390x libavahi-common3 libavahi-common3:s390x libblkid1:s390x libbrotli1 libbrotli1:s390x libbsd0:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcap2:s390x libclang1-19 libcom-err2 libcom-err2:s390x libcrypt-dev:s390x libcrypt1:s390x libcups2t64 libcups2t64:s390x libdbus-1-3 libdbus-1-3:s390x libdebhelper-perl libdouble-conversion3 libdouble-conversion3:s390x libdrm-amdgpu1 libdrm-amdgpu1:s390x libdrm-common libdrm-intel1 libdrm2 libdrm2:s390x libedit2 libedit2:s390x libegl-dev:s390x libegl-mesa0 libegl-mesa0:s390x libegl1 libegl1:s390x libelf1t64 libelf1t64:s390x libevdev2 libevdev2:s390x libexpat1 libexpat1:s390x libfakeroot libffi8 libffi8:s390x libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:s390x libfreetype6 libfreetype6:s390x libgbm1 libgbm1:s390x libgcc-14-dev:s390x libgcc-14-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgl-dev:s390x libgl1 libgl1:s390x libgl1-mesa-dri libgl1-mesa-dri:s390x libglib2.0-0t64 libglib2.0-0t64:s390x libglu1-mesa:s390x libglu1-mesa-dev:s390x libglvnd0 libglvnd0:s390x libglx-dev:s390x libglx-mesa0 libglx-mesa0:s390x libglx0 libglx0:s390x libgmp10:s390x libgnutls30t64 libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgraphite2-3 libgraphite2-3:s390x libgssapi-krb5-2 libgssapi-krb5-2:s390x libgudev-1.0-0 libgudev-1.0-0:s390x libharfbuzz0b libharfbuzz0b:s390x libhogweed6t64:s390x libice6 libice6:s390x libicu76 libicu76:s390x libidn2-0 libidn2-0:s390x libinput-bin libinput10 libinput10:s390x libitm1:s390x libitm1-s390x-cross libjpeg62-turbo libjpeg62-turbo:s390x libk5crypto3 libk5crypto3:s390x libkeyutils1 libkeyutils1:s390x libkrb5-3 libkrb5-3:s390x libkrb5support0 libkrb5support0:s390x libllvm19 libllvm19:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libmd0:s390x libmd4c0 libmd4c0:s390x libmount1:s390x libmtdev1t64 libmtdev1t64:s390x libncursesw6 libnettle8t64:s390x libopengl-dev:s390x libopengl0:s390x libp11-kit0 libp11-kit0:s390x libpciaccess0 libpcre2-16-0 libpcre2-16-0:s390x libpcre2-8-0:s390x libpipeline1 libpng16-16t64 libpng16-16t64:s390x libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqt5concurrent5t64:s390x libqt5core5t64 libqt5core5t64:s390x libqt5dbus5t64 libqt5dbus5t64:s390x libqt5designer5 libqt5designercomponents5 libqt5gui5t64 libqt5gui5t64:s390x libqt5help5 libqt5network5t64 libqt5network5t64:s390x libqt5printsupport5t64 libqt5printsupport5t64:s390x libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sql5-sqlite libqt5sql5t64 libqt5sql5t64:s390x libqt5test5t64:s390x libqt5widgets5t64 libqt5widgets5t64:s390x libqt5xml5t64 libqt5xml5t64:s390x libreadline8t64 libselinux1:s390x libsensors-config libsensors5 libsensors5:s390x libsm6 libsm6:s390x libssl3t64:s390x libstdc++-14-dev:s390x libstdc++-14-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsystemd0:s390x libtasn1-6 libtasn1-6:s390x libtinfo6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libudev1:s390x libunistring5 libunistring5:s390x libuuid1:s390x libvulkan-dev:s390x libvulkan1 libvulkan1:s390x libwacom-common libwacom9 libwacom9:s390x libwayland-client0 libwayland-client0:s390x libwayland-server0 libwayland-server0:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev:s390x libx11-xcb1 libx11-xcb1:s390x libxau-dev:s390x libxau6 libxau6:s390x libxcb-dri3-0 libxcb-dri3-0:s390x libxcb-glx0 libxcb-glx0:s390x libxcb-icccm4 libxcb-icccm4:s390x libxcb-image0 libxcb-image0:s390x libxcb-keysyms1 libxcb-keysyms1:s390x libxcb-present0 libxcb-present0:s390x libxcb-randr0 libxcb-randr0:s390x libxcb-render-util0 libxcb-render-util0:s390x libxcb-render0 libxcb-render0:s390x libxcb-shape0 libxcb-shape0:s390x libxcb-shm0 libxcb-shm0:s390x libxcb-sync1 libxcb-sync1:s390x libxcb-util1 libxcb-util1:s390x libxcb-xfixes0 libxcb-xfixes0:s390x libxcb-xinerama0 libxcb-xinerama0:s390x libxcb-xinput0 libxcb-xinput0:s390x libxcb-xkb1 libxcb-xkb1:s390x libxcb1 libxcb1:s390x libxcb1-dev:s390x libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6 libxext6:s390x libxkbcommon-x11-0 libxkbcommon-x11-0:s390x libxkbcommon0 libxkbcommon0:s390x libxml2 libxml2:s390x libxrender1 libxrender1:s390x libxshmfence1 libxshmfence1:s390x libxxf86vm1 libxxf86vm1:s390x libz3-4 libz3-4:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db media-types mesa-libgallium mesa-libgallium:s390x netbase po-debconf python3 python3-minimal python3.13 python3.13-minimal qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:s390x qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:s390x qtbase5-dev-tools qtchooser qttools5-dev-tools readline-common sensible-utils shared-mime-info x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x cups-common cups-common:s390x low-memory-monitor low-memory-monitor:s390x gnutls-bin gnutls-bin:s390x krb5-doc krb5-user krb5-doc:s390x krb5-user:s390x cryptsetup-bin:s390x pciutils libthai0 libthai0:s390x qgnomeplatform-qt5 qt5-image-formats-plugins qgnomeplatform-qt5:s390x qt5-image-formats-plugins:s390x qt5-qmltooling-plugins lm-sensors lm-sensors:s390x libstdc++-14-doc:s390x libgcrypt20:s390x liblz4-1:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:s390x libwacom-bin libwacom-bin:s390x libx11-doc:s390x libxcb-doc:s390x libxext-doc:s390x m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support qt5-doc default-libmysqlclient-dev:s390x firebird-dev:s390x libpq-dev:s390x libsqlite3-dev:s390x unixodbc-dev:s390x readline-doc Recommended packages: curl | wget | lynx dbus dbus:s390x libarchive-cpio-perl libglib2.0-data xdg-user-dirs libglib2.0-data:s390x xdg-user-dirs:s390x krb5-locales krb5-locales:s390x libgpm2 qttranslations5-l10n qttranslations5-l10n:s390x libqt5svg5 qt5-gtk-platformtheme qtwayland5 libqt5svg5:s390x qt5-gtk-platformtheme:s390x qtwayland5:s390x libqt5sql5-sqlite:s390x | libqt5sql5-mysql:s390x | libqt5sql5-odbc:s390x | libqt5sql5-psql:s390x | libqt5sql5-tds:s390x | libqt5sql5-ibase:s390x libltdl-dev mesa-vulkan-drivers | vulkan-icd mesa-vulkan-drivers:s390x | vulkan-icd:s390x libmail-sendmail-perl ca-certificates libqt5opengl5-dev:s390x The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc-14-base:s390x gcc-14-cross-base gcc-14-s390x-linux-gnu gcc-14-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libavahi-client3 libavahi-client3:s390x libavahi-common-data libavahi-common-data:s390x libavahi-common3 libavahi-common3:s390x libblkid1:s390x libbrotli1 libbrotli1:s390x libbsd0:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcap2:s390x libclang1-19 libcom-err2 libcom-err2:s390x libcrypt-dev:s390x libcrypt1:s390x libcups2t64 libcups2t64:s390x libdbus-1-3 libdbus-1-3:s390x libdebhelper-perl libdouble-conversion3 libdouble-conversion3:s390x libdrm-amdgpu1 libdrm-amdgpu1:s390x libdrm-common libdrm-intel1 libdrm2 libdrm2:s390x libedit2 libedit2:s390x libegl-dev:s390x libegl-mesa0 libegl-mesa0:s390x libegl1 libegl1:s390x libelf1t64 libelf1t64:s390x libevdev2 libevdev2:s390x libexpat1 libexpat1:s390x libfakeroot libffi8 libffi8:s390x libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:s390x libfreetype6 libfreetype6:s390x libgbm1 libgbm1:s390x libgcc-14-dev:s390x libgcc-14-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgl-dev:s390x libgl1 libgl1:s390x libgl1-mesa-dri libgl1-mesa-dri:s390x libglib2.0-0t64 libglib2.0-0t64:s390x libglu1-mesa:s390x libglu1-mesa-dev:s390x libglvnd0 libglvnd0:s390x libglx-dev:s390x libglx-mesa0 libglx-mesa0:s390x libglx0 libglx0:s390x libgmp10:s390x libgnutls30t64 libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgraphite2-3 libgraphite2-3:s390x libgssapi-krb5-2 libgssapi-krb5-2:s390x libgudev-1.0-0 libgudev-1.0-0:s390x libharfbuzz0b libharfbuzz0b:s390x libhogweed6t64:s390x libice6 libice6:s390x libicu76 libicu76:s390x libidn2-0 libidn2-0:s390x libinput-bin libinput10 libinput10:s390x libitm1:s390x libitm1-s390x-cross libjpeg62-turbo libjpeg62-turbo:s390x libk5crypto3 libk5crypto3:s390x libkeyutils1 libkeyutils1:s390x libkrb5-3 libkrb5-3:s390x libkrb5support0 libkrb5support0:s390x libllvm19 libllvm19:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libmd0:s390x libmd4c0 libmd4c0:s390x libmount1:s390x libmtdev1t64 libmtdev1t64:s390x libncursesw6 libnettle8t64:s390x libopengl-dev:s390x libopengl0:s390x libp11-kit0 libp11-kit0:s390x libpciaccess0 libpcre2-16-0 libpcre2-16-0:s390x libpcre2-8-0:s390x libpipeline1 libpng16-16t64 libpng16-16t64:s390x libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqt5concurrent5t64:s390x libqt5core5t64 libqt5core5t64:s390x libqt5dbus5t64 libqt5dbus5t64:s390x libqt5designer5 libqt5designercomponents5 libqt5gui5t64 libqt5gui5t64:s390x libqt5help5 libqt5network5t64 libqt5network5t64:s390x libqt5printsupport5t64 libqt5printsupport5t64:s390x libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5quickwidgets5 libqt5sql5-sqlite libqt5sql5t64 libqt5sql5t64:s390x libqt5test5t64:s390x libqt5widgets5t64 libqt5widgets5t64:s390x libqt5xml5t64 libqt5xml5t64:s390x libreadline8t64 libselinux1:s390x libsensors-config libsensors5 libsensors5:s390x libsm6 libsm6:s390x libssl3t64:s390x libstdc++-14-dev:s390x libstdc++-14-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsystemd0:s390x libtasn1-6 libtasn1-6:s390x libtinfo6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libudev1:s390x libunistring5 libunistring5:s390x libuuid1:s390x libvulkan-dev:s390x libvulkan1 libvulkan1:s390x libwacom-common libwacom9 libwacom9:s390x libwayland-client0 libwayland-client0:s390x libwayland-server0 libwayland-server0:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev:s390x libx11-xcb1 libx11-xcb1:s390x libxau-dev:s390x libxau6 libxau6:s390x libxcb-dri3-0 libxcb-dri3-0:s390x libxcb-glx0 libxcb-glx0:s390x libxcb-icccm4 libxcb-icccm4:s390x libxcb-image0 libxcb-image0:s390x libxcb-keysyms1 libxcb-keysyms1:s390x libxcb-present0 libxcb-present0:s390x libxcb-randr0 libxcb-randr0:s390x libxcb-render-util0 libxcb-render-util0:s390x libxcb-render0 libxcb-render0:s390x libxcb-shape0 libxcb-shape0:s390x libxcb-shm0 libxcb-shm0:s390x libxcb-sync1 libxcb-sync1:s390x libxcb-util1 libxcb-util1:s390x libxcb-xfixes0 libxcb-xfixes0:s390x libxcb-xinerama0 libxcb-xinerama0:s390x libxcb-xinput0 libxcb-xinput0:s390x libxcb-xkb1 libxcb-xkb1:s390x libxcb1 libxcb1:s390x libxcb1-dev:s390x libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6 libxext6:s390x libxkbcommon-x11-0 libxkbcommon-x11-0:s390x libxkbcommon0 libxkbcommon0:s390x libxml2 libxml2:s390x libxrender1 libxrender1:s390x libxshmfence1 libxshmfence1:s390x libxxf86vm1 libxxf86vm1:s390x libz3-4 libz3-4:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db media-types mesa-libgallium mesa-libgallium:s390x netbase po-debconf python3 python3-minimal python3.13 python3.13-minimal qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake:s390x qt5-qmake-bin qtattributionsscanner-qt5 qtbase5-dev:s390x qtbase5-dev-tools qtchooser qttools5-dev-tools readline-common sbuild-build-depends-main-dummy:s390x sensible-utils shared-mime-info x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g:s390x 0 upgraded, 333 newly installed, 0 to remove and 0 not upgraded. Need to get 269 MB of archives. After this operation, 1136 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://localhost:3142/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:4 http://localhost:3142/debian unstable/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:5 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:6 http://localhost:3142/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:10 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:13 http://localhost:3142/debian unstable/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:15 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:16 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:19 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:20 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:22 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:23 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:25 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:26 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:27 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:28 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:29 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:30 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:31 http://localhost:3142/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.44-3 [1309 kB] Get:32 http://localhost:3142/debian unstable/main amd64 gcc-14-s390x-linux-gnu-base amd64 14.2.0-19cross1 [49.6 kB] Get:33 http://localhost:3142/debian unstable/main amd64 cpp-14-s390x-linux-gnu amd64 14.2.0-19cross1 [9411 kB] Get:34 http://localhost:3142/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:14.2.0-1 [4848 B] Get:35 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libc6-s390x-cross all 2.41-8cross1 [1169 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libgcc-s1-s390x-cross all 14.2.0-19cross1 [31.9 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libgomp1-s390x-cross all 14.2.0-19cross1 [129 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libitm1-s390x-cross all 14.2.0-19cross1 [26.3 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libatomic1-s390x-cross all 14.2.0-19cross1 [8296 B] Get:41 http://localhost:3142/debian unstable/main amd64 libasan8-s390x-cross all 14.2.0-19cross1 [2563 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libstdc++6-s390x-cross all 14.2.0-19cross1 [713 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libubsan1-s390x-cross all 14.2.0-19cross1 [1054 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-s390x-cross all 14.2.0-19cross1 [876 kB] Get:45 http://localhost:3142/debian unstable/main amd64 gcc-14-s390x-linux-gnu amd64 14.2.0-19cross1 [17.8 MB] Get:46 http://localhost:3142/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:14.2.0-1 [1448 B] Get:47 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-s390x-cross all 6.12.29-1cross1 [2415 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libc6-dev-s390x-cross all 2.41-8cross1 [1555 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-s390x-cross all 14.2.0-19cross1 [2387 kB] Get:50 http://localhost:3142/debian unstable/main amd64 g++-14-s390x-linux-gnu amd64 14.2.0-19cross1 [10.4 MB] Get:51 http://localhost:3142/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:52 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-s390x all 12.12 [3548 B] Get:53 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:55 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:58 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:59 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:60 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:63 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:64 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:65 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:66 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:68 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:72 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:73 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:74 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:76 http://localhost:3142/debian unstable/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:77 http://localhost:3142/debian unstable/main s390x gcc-14-base s390x 14.2.0-19 [49.4 kB] Get:78 http://localhost:3142/debian unstable/main s390x libgcc-s1 s390x 14.2.0-19 [31.9 kB] Get:79 http://localhost:3142/debian unstable/main s390x libc6 s390x 2.41-9 [2454 kB] Get:80 http://localhost:3142/debian unstable/main s390x libasan8 s390x 14.2.0-19 [2570 kB] Get:81 http://localhost:3142/debian unstable/main s390x libatomic1 s390x 14.2.0-19 [8588 B] Get:82 http://localhost:3142/debian unstable/main amd64 libavahi-common-data amd64 0.8-16 [112 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB] Get:86 http://localhost:3142/debian unstable/main s390x libavahi-common-data s390x 0.8-16 [112 kB] Get:87 http://localhost:3142/debian unstable/main s390x libavahi-common3 s390x 0.8-16 [43.2 kB] Get:88 http://localhost:3142/debian unstable/main s390x libcap2 s390x 1:2.75-9 [28.5 kB] Get:89 http://localhost:3142/debian unstable/main s390x libsystemd0 s390x 257.7-1 [437 kB] Get:90 http://localhost:3142/debian unstable/main s390x libdbus-1-3 s390x 1.16.2-2 [174 kB] Get:91 http://localhost:3142/debian unstable/main s390x libavahi-client3 s390x 0.8-16 [46.1 kB] Get:92 http://localhost:3142/debian unstable/main s390x libblkid1 s390x 2.41-5 [166 kB] Get:93 http://localhost:3142/debian unstable/main s390x libbrotli1 s390x 1.1.0-2+b7 [340 kB] Get:94 http://localhost:3142/debian unstable/main s390x libmd0 s390x 1.1.0-2+b1 [33.4 kB] Get:95 http://localhost:3142/debian unstable/main s390x libbsd0 s390x 0.12.2-2 [133 kB] Get:96 http://localhost:3142/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-6 [42.3 kB] Get:97 http://localhost:3142/debian unstable/main s390x libcrypt1 s390x 1:4.4.38-1 [94.0 kB] Get:98 http://localhost:3142/debian unstable/main s390x libcrypt-dev s390x 1:4.4.38-1 [123 kB] Get:99 http://localhost:3142/debian unstable/main s390x libc6-dev s390x 2.41-9 [1559 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-3+b1 [26.0 MB] Get:103 http://localhost:3142/debian unstable/main amd64 libclang1-19 amd64 1:19.1.7-3+b1 [7623 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b1 [25.0 kB] Get:105 http://localhost:3142/debian unstable/main s390x libcom-err2 s390x 1.47.2-3+b1 [24.8 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:113 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libcups2t64 amd64 2.4.10-3 [251 kB] Get:116 http://localhost:3142/debian unstable/main s390x libgmp10 s390x 2:6.3.0+dfsg-3 [604 kB] Get:117 http://localhost:3142/debian unstable/main s390x libnettle8t64 s390x 3.10.1-1 [319 kB] Get:118 http://localhost:3142/debian unstable/main s390x libhogweed6t64 s390x 3.10.1-1 [337 kB] Get:119 http://localhost:3142/debian unstable/main s390x libunistring5 s390x 1.3-2 [472 kB] Get:120 http://localhost:3142/debian unstable/main s390x libidn2-0 s390x 2.3.8-2 [108 kB] Get:121 http://localhost:3142/debian unstable/main s390x libffi8 s390x 3.4.8-2 [21.1 kB] Get:122 http://localhost:3142/debian unstable/main s390x libp11-kit0 s390x 0.25.5-3 [429 kB] Get:123 http://localhost:3142/debian unstable/main s390x libtasn1-6 s390x 4.20.0-2 [48.8 kB] Get:124 http://localhost:3142/debian unstable/main s390x libgnutls30t64 s390x 3.8.9-2 [1382 kB] Get:125 http://localhost:3142/debian unstable/main s390x libkrb5support0 s390x 1.21.3-5 [33.1 kB] Get:126 http://localhost:3142/debian unstable/main s390x libk5crypto3 s390x 1.21.3-5 [83.6 kB] Get:127 http://localhost:3142/debian unstable/main s390x libkeyutils1 s390x 1.6.3-6 [9492 B] Get:128 http://localhost:3142/debian unstable/main s390x libzstd1 s390x 1.5.7+dfsg-1 [324 kB] Get:129 http://localhost:3142/debian unstable/main s390x zlib1g s390x 1:1.3.dfsg+really1.3.1-1+b1 [86.9 kB] Get:130 http://localhost:3142/debian unstable/main s390x libssl3t64 s390x 3.5.0-2 [2024 kB] Get:131 http://localhost:3142/debian unstable/main s390x libkrb5-3 s390x 1.21.3-5 [319 kB] Get:132 http://localhost:3142/debian unstable/main s390x libgssapi-krb5-2 s390x 1.21.3-5 [132 kB] Get:133 http://localhost:3142/debian unstable/main s390x libcups2t64 s390x 2.4.10-3 [245 kB] Get:134 http://localhost:3142/debian unstable/main s390x libstdc++6 s390x 14.2.0-19 [764 kB] Get:135 http://localhost:3142/debian unstable/main s390x libdouble-conversion3 s390x 3.3.1-1 [41.9 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.1-1 [41.8 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get:138 http://localhost:3142/debian unstable/main s390x libdrm2 s390x 2.4.124-2 [38.8 kB] Get:139 http://localhost:3142/debian unstable/main s390x libdrm-amdgpu1 s390x 2.4.124-2 [22.1 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libdrm-intel1 amd64 2.4.124-2 [64.1 kB] Get:144 http://localhost:3142/debian unstable/main s390x libtinfo6 s390x 6.5+20250216-2 [349 kB] Get:145 http://localhost:3142/debian unstable/main s390x libedit2 s390x 3.1-20250104-1 [96.7 kB] Get:146 http://localhost:3142/debian unstable/main s390x libglvnd0 s390x 1.7.0-1+b2 [80.9 kB] Get:147 http://localhost:3142/debian unstable/main s390x libexpat1 s390x 2.7.1-1 [106 kB] Get:148 http://localhost:3142/debian unstable/main s390x libwayland-server0 s390x 1.23.1-3 [34.2 kB] Get:149 http://localhost:3142/debian unstable/main s390x libelf1t64 s390x 0.192-4 [190 kB] Get:150 http://localhost:3142/debian unstable/main s390x liblzma5 s390x 5.8.1-1 [310 kB] Get:151 http://localhost:3142/debian unstable/main s390x libxml2 s390x 2.12.7+dfsg+really2.9.14-1 [670 kB] Get:152 http://localhost:3142/debian unstable/main s390x libz3-4 s390x 4.13.3-1 [9095 kB] Get:153 http://localhost:3142/debian unstable/main s390x libllvm19 s390x 1:19.1.7-3+b1 [30.0 MB] Get:154 http://localhost:3142/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:155 http://localhost:3142/debian unstable/main s390x libsensors5 s390x 1:3.6.2-2 [37.4 kB] Get:156 http://localhost:3142/debian unstable/main s390x libxau6 s390x 1:1.0.11-1 [20.2 kB] Get:157 http://localhost:3142/debian unstable/main s390x libxdmcp6 s390x 1:1.1.5-1 [28.1 kB] Get:158 http://localhost:3142/debian unstable/main s390x libxcb1 s390x 1.17.0-2+b1 [144 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:160 http://localhost:3142/debian unstable/main s390x libx11-6 s390x 2:1.8.12-1 [821 kB] Get:161 http://localhost:3142/debian unstable/main s390x libx11-xcb1 s390x 2:1.8.12-1 [247 kB] Get:162 http://localhost:3142/debian unstable/main s390x libxcb-dri3-0 s390x 1.17.0-2+b1 [107 kB] Get:163 http://localhost:3142/debian unstable/main s390x libxcb-present0 s390x 1.17.0-2+b1 [106 kB] Get:164 http://localhost:3142/debian unstable/main s390x libxcb-randr0 s390x 1.17.0-2+b1 [117 kB] Get:165 http://localhost:3142/debian unstable/main s390x libxcb-sync1 s390x 1.17.0-2+b1 [109 kB] Get:166 http://localhost:3142/debian unstable/main s390x libxcb-xfixes0 s390x 1.17.0-2+b1 [109 kB] Get:167 http://localhost:3142/debian unstable/main s390x libxshmfence1 s390x 1.3.3-1 [10.9 kB] Get:168 http://localhost:3142/debian unstable/main s390x mesa-libgallium s390x 25.0.7-2 [6967 kB] Get:169 http://localhost:3142/debian unstable/main s390x libgbm1 s390x 25.0.7-2 [44.5 kB] Get:170 http://localhost:3142/debian unstable/main s390x libwayland-client0 s390x 1.23.1-3 [26.8 kB] Get:171 http://localhost:3142/debian unstable/main s390x libxcb-shm0 s390x 1.17.0-2+b1 [105 kB] Get:172 http://localhost:3142/debian unstable/main s390x libegl-mesa0 s390x 25.0.7-2 [124 kB] Get:173 http://localhost:3142/debian unstable/main s390x libegl1 s390x 1.7.0-1+b2 [34.3 kB] Get:174 http://localhost:3142/debian unstable/main s390x libxcb-glx0 s390x 1.17.0-2+b1 [122 kB] Get:175 http://localhost:3142/debian unstable/main s390x libxext6 s390x 2:1.3.4-1+b3 [50.5 kB] Get:176 http://localhost:3142/debian unstable/main s390x libxxf86vm1 s390x 1:1.1.4-1+b4 [19.4 kB] Get:177 http://localhost:3142/debian unstable/main s390x libvulkan1 s390x 1.4.309.0-1 [124 kB] Get:178 http://localhost:3142/debian unstable/main s390x libgl1-mesa-dri s390x 25.0.7-2 [46.2 kB] Get:179 http://localhost:3142/debian unstable/main s390x libglx-mesa0 s390x 25.0.7-2 [151 kB] Get:180 http://localhost:3142/debian unstable/main s390x libglx0 s390x 1.7.0-1+b2 [30.4 kB] Get:181 http://localhost:3142/debian unstable/main s390x libgl1 s390x 1.7.0-1+b2 [125 kB] Get:182 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:183 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get:184 http://localhost:3142/debian unstable/main s390x libxau-dev s390x 1:1.0.11-1 [23.4 kB] Get:185 http://localhost:3142/debian unstable/main s390x libxdmcp-dev s390x 1:1.1.5-1 [44.8 kB] Get:186 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:187 http://localhost:3142/debian unstable/main s390x libxcb1-dev s390x 1.17.0-2+b1 [181 kB] Get:188 http://localhost:3142/debian unstable/main s390x libx11-dev s390x 2:1.8.12-1 [886 kB] Get:189 http://localhost:3142/debian unstable/main s390x libglx-dev s390x 1.7.0-1+b2 [15.8 kB] Get:190 http://localhost:3142/debian unstable/main s390x libgl-dev s390x 1.7.0-1+b2 [101 kB] Get:191 http://localhost:3142/debian unstable/main s390x libegl-dev s390x 1.7.0-1+b2 [19.5 kB] Get:192 http://localhost:3142/debian unstable/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB] Get:193 http://localhost:3142/debian unstable/main amd64 libsensors5 amd64 1:3.6.2-2 [37.5 kB] Get:194 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:195 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:196 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:197 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:198 http://localhost:3142/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB] Get:199 http://localhost:3142/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:200 http://localhost:3142/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:201 http://localhost:3142/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:202 http://localhost:3142/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:203 http://localhost:3142/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:204 http://localhost:3142/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB] Get:205 http://localhost:3142/debian unstable/main amd64 mesa-libgallium amd64 25.0.7-2 [9629 kB] Get:206 http://localhost:3142/debian unstable/main amd64 libgbm1 amd64 25.0.7-2 [44.4 kB] Get:207 http://localhost:3142/debian unstable/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB] Get:208 http://localhost:3142/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:209 http://localhost:3142/debian unstable/main amd64 libegl-mesa0 amd64 25.0.7-2 [128 kB] Get:210 http://localhost:3142/debian unstable/main amd64 libevdev2 amd64 1.13.4+dfsg-1 [32.4 kB] Get:211 http://localhost:3142/debian unstable/main s390x libevdev2 s390x 1.13.4+dfsg-1 [31.8 kB] Get:212 http://localhost:3142/debian unstable/main s390x libpng16-16t64 s390x 1.6.48-1 [283 kB] Get:213 http://localhost:3142/debian unstable/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [459 kB] Get:214 http://localhost:3142/debian unstable/main s390x libfontconfig1 s390x 2.15.0-2.3 [391 kB] Get:215 http://localhost:3142/debian unstable/main s390x libgomp1 s390x 14.2.0-19 [132 kB] Get:216 http://localhost:3142/debian unstable/main s390x libitm1 s390x 14.2.0-19 [26.9 kB] Get:217 http://localhost:3142/debian unstable/main s390x libubsan1 s390x 14.2.0-19 [1056 kB] Get:218 http://localhost:3142/debian unstable/main s390x libgcc-14-dev s390x 14.2.0-19 [876 kB] Get:219 http://localhost:3142/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:220 http://localhost:3142/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:221 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:222 http://localhost:3142/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get:223 http://localhost:3142/debian unstable/main amd64 libvulkan1 amd64 1.4.309.0-1 [130 kB] Get:224 http://localhost:3142/debian unstable/main amd64 libgl1-mesa-dri amd64 25.0.7-2 [46.1 kB] Get:225 http://localhost:3142/debian unstable/main amd64 libglx-mesa0 amd64 25.0.7-2 [143 kB] Get:226 http://localhost:3142/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:227 http://localhost:3142/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get:228 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Get:229 http://localhost:3142/debian unstable/main s390x libpcre2-8-0 s390x 10.45-1 [297 kB] Get:230 http://localhost:3142/debian unstable/main s390x libselinux1 s390x 3.8.1-1 [82.4 kB] Get:231 http://localhost:3142/debian unstable/main s390x libmount1 s390x 2.41-5 [200 kB] Get:232 http://localhost:3142/debian unstable/main s390x libglib2.0-0t64 s390x 2.84.3-1 [1433 kB] Get:233 http://localhost:3142/debian unstable/main s390x libopengl0 s390x 1.7.0-1+b2 [44.0 kB] Get:234 http://localhost:3142/debian unstable/main s390x libglu1-mesa s390x 9.0.2-1.1+b3 [196 kB] Get:235 http://localhost:3142/debian unstable/main s390x libopengl-dev s390x 1.7.0-1+b2 [5364 B] Get:236 http://localhost:3142/debian unstable/main s390x libglu1-mesa-dev s390x 9.0.2-1.1+b3 [233 kB] Get:237 http://localhost:3142/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:238 http://localhost:3142/debian unstable/main s390x libgraphite2-3 s390x 1.3.14-2+b1 [77.9 kB] Get:239 http://localhost:3142/debian unstable/main s390x libudev1 s390x 257.7-1 [147 kB] Get:240 http://localhost:3142/debian unstable/main s390x libgudev-1.0-0 s390x 238-6 [13.9 kB] Get:241 http://localhost:3142/debian unstable/main amd64 libgudev-1.0-0 amd64 238-6 [14.5 kB] Get:242 http://localhost:3142/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:243 http://localhost:3142/debian unstable/main s390x libharfbuzz0b s390x 10.2.0-1+b1 [499 kB] Get:244 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get:245 http://localhost:3142/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:246 http://localhost:3142/debian unstable/main s390x libice6 s390x 2:1.1.1-1 [64.9 kB] Get:247 http://localhost:3142/debian unstable/main s390x libicu76 s390x 76.1-4 [9523 kB] Get:248 http://localhost:3142/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:249 http://localhost:3142/debian unstable/main amd64 libwacom-common all 2.14.0-1 [103 kB] Get:250 http://localhost:3142/debian unstable/main amd64 libwacom9 amd64 2.14.0-1 [25.3 kB] Get:251 http://localhost:3142/debian unstable/main amd64 libinput-bin amd64 1.28.1-1 [26.3 kB] Get:252 http://localhost:3142/debian unstable/main amd64 libmtdev1t64 amd64 1.1.7-1 [22.6 kB] Get:253 http://localhost:3142/debian unstable/main amd64 libinput10 amd64 1.28.1-1 [143 kB] Get:254 http://localhost:3142/debian unstable/main s390x libmtdev1t64 s390x 1.1.7-1 [23.6 kB] Get:255 http://localhost:3142/debian unstable/main s390x libwacom9 s390x 2.14.0-1 [24.4 kB] Get:256 http://localhost:3142/debian unstable/main s390x libinput10 s390x 1.28.1-1 [132 kB] Get:257 http://localhost:3142/debian unstable/main s390x libjpeg62-turbo s390x 1:2.1.5-4 [160 kB] Get:258 http://localhost:3142/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:259 http://localhost:3142/debian unstable/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get:260 http://localhost:3142/debian unstable/main s390x libmd4c0 s390x 0.5.2-2+b1 [51.6 kB] Get:261 http://localhost:3142/debian unstable/main s390x libpcre2-16-0 s390x 10.45-1 [281 kB] Get:262 http://localhost:3142/debian unstable/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB] Get:263 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:264 http://localhost:3142/debian unstable/main s390x libqt5core5t64 s390x 5.15.15+dfsg-6 [1945 kB] Get:265 http://localhost:3142/debian unstable/main s390x libqt5concurrent5t64 s390x 5.15.15+dfsg-6 [44.8 kB] Get:266 http://localhost:3142/debian unstable/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-6 [1872 kB] Get:267 http://localhost:3142/debian unstable/main s390x libqt5dbus5t64 s390x 5.15.15+dfsg-6 [222 kB] Get:268 http://localhost:3142/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-6 [217 kB] Get:269 http://localhost:3142/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get:270 http://localhost:3142/debian unstable/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-6 [682 kB] Get:271 http://localhost:3142/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:272 http://localhost:3142/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get:273 http://localhost:3142/debian unstable/main amd64 libxcb-util1 amd64 0.4.1-1 [23.5 kB] Get:274 http://localhost:3142/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get:275 http://localhost:3142/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [16.7 kB] Get:276 http://localhost:3142/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:277 http://localhost:3142/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.10-1 [18.4 kB] Get:278 http://localhost:3142/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get:279 http://localhost:3142/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get:280 http://localhost:3142/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get:281 http://localhost:3142/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get:282 http://localhost:3142/debian unstable/main amd64 xkb-data all 2.42-1 [790 kB] Get:283 http://localhost:3142/debian unstable/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Get:284 http://localhost:3142/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [16.2 kB] Get:285 http://localhost:3142/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:286 http://localhost:3142/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-6 [3497 kB] Get:287 http://localhost:3142/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-6 [2395 kB] Get:288 http://localhost:3142/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.15+dfsg-6 [126 kB] Get:289 http://localhost:3142/debian unstable/main amd64 libqt5designer5 amd64 5.15.15-6 [2758 kB] Get:290 http://localhost:3142/debian unstable/main amd64 libqt5designercomponents5 amd64 5.15.15-6 [736 kB] Get:291 http://localhost:3142/debian unstable/main s390x libqt5network5t64 s390x 5.15.15+dfsg-6 [701 kB] Get:292 http://localhost:3142/debian unstable/main s390x libuuid1 s390x 2.41-5 [37.7 kB] Get:293 http://localhost:3142/debian unstable/main s390x libsm6 s390x 2:1.2.6-1 [37.6 kB] Get:294 http://localhost:3142/debian unstable/main s390x libxcb-icccm4 s390x 0.4.2-1 [27.5 kB] Get:295 http://localhost:3142/debian unstable/main s390x libxcb-util1 s390x 0.4.1-1 [23.4 kB] Get:296 http://localhost:3142/debian unstable/main s390x libxcb-image0 s390x 0.4.0-2+b2 [22.9 kB] Get:297 http://localhost:3142/debian unstable/main s390x libxcb-keysyms1 s390x 0.4.1-1 [16.8 kB] Get:298 http://localhost:3142/debian unstable/main s390x libxcb-render0 s390x 1.17.0-2+b1 [115 kB] Get:299 http://localhost:3142/debian unstable/main s390x libxcb-render-util0 s390x 0.3.10-1 [18.2 kB] Get:300 http://localhost:3142/debian unstable/main s390x libxcb-shape0 s390x 1.17.0-2+b1 [106 kB] Get:301 http://localhost:3142/debian unstable/main s390x libxcb-xinerama0 s390x 1.17.0-2+b1 [105 kB] Get:302 http://localhost:3142/debian unstable/main s390x libxcb-xinput0 s390x 1.17.0-2+b1 [131 kB] Get:303 http://localhost:3142/debian unstable/main s390x libxcb-xkb1 s390x 1.17.0-2+b1 [129 kB] Get:304 http://localhost:3142/debian unstable/main s390x libxkbcommon0 s390x 1.7.0-2 [111 kB] Get:305 http://localhost:3142/debian unstable/main s390x libxkbcommon-x11-0 s390x 1.7.0-2 [16.4 kB] Get:306 http://localhost:3142/debian unstable/main s390x libxrender1 s390x 1:0.9.12-1 [28.6 kB] Get:307 http://localhost:3142/debian unstable/main s390x libqt5gui5t64 s390x 5.15.15+dfsg-6 [3440 kB] Get:308 http://localhost:3142/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.15+dfsg-6 [125 kB] Get:309 http://localhost:3142/debian unstable/main amd64 libqt5help5 amd64 5.15.15-6 [151 kB] Get:310 http://localhost:3142/debian unstable/main s390x libqt5widgets5t64 s390x 5.15.15+dfsg-6 [2452 kB] Get:311 http://localhost:3142/debian unstable/main s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-6 [209 kB] Get:312 http://localhost:3142/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-6 [206 kB] Get:313 http://localhost:3142/debian unstable/main amd64 libqt5qml5 amd64 5.15.15+dfsg-3 [1377 kB] Get:314 http://localhost:3142/debian unstable/main amd64 libqt5qmlmodels5 amd64 5.15.15+dfsg-3 [193 kB] Get:315 http://localhost:3142/debian unstable/main amd64 libqt5quick5 amd64 5.15.15+dfsg-3 [1610 kB] Get:316 http://localhost:3142/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.15.15+dfsg-3 [40.2 kB] Get:317 http://localhost:3142/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.15.15+dfsg-6 [59.4 kB] Get:318 http://localhost:3142/debian unstable/main s390x libqt5sql5t64 s390x 5.15.15+dfsg-6 [128 kB] Get:319 http://localhost:3142/debian unstable/main s390x libqt5test5t64 s390x 5.15.15+dfsg-6 [150 kB] Get:320 http://localhost:3142/debian unstable/main s390x libqt5xml5t64 s390x 5.15.15+dfsg-6 [126 kB] Get:321 http://localhost:3142/debian unstable/main s390x libstdc++-14-dev s390x 14.2.0-19 [2409 kB] Get:322 http://localhost:3142/debian unstable/main s390x libvulkan-dev s390x 1.4.309.0-1 [1556 kB] Get:323 http://localhost:3142/debian unstable/main s390x libxext-dev s390x 2:1.3.4-1+b3 [105 kB] Get:324 http://localhost:3142/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:325 http://localhost:3142/debian unstable/main amd64 qdoc-qt5 amd64 5.15.15-6 [593 kB] Get:326 http://localhost:3142/debian unstable/main amd64 qhelpgenerator-qt5 amd64 5.15.15-6 [61.3 kB] Get:327 http://localhost:3142/debian unstable/main amd64 qt5-assistant amd64 5.15.15-6 [352 kB] Get:328 http://localhost:3142/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.15+dfsg-6 [1067 kB] Get:329 http://localhost:3142/debian unstable/main s390x qt5-qmake s390x 5.15.15+dfsg-6 [224 kB] Get:330 http://localhost:3142/debian unstable/main amd64 qtattributionsscanner-qt5 amd64 5.15.15-6 [33.0 kB] Get:331 http://localhost:3142/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.15+dfsg-6 [778 kB] Get:332 http://localhost:3142/debian unstable/main s390x qtbase5-dev s390x 5.15.15+dfsg-6 [1118 kB] Get:333 http://localhost:3142/debian unstable/main amd64 qttools5-dev-tools amd64 5.15.15-6 [1045 kB] Preconfiguring packages ... Fetched 269 MB in 1s (193 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 13221 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libxkbcommon-x11-0:s390x (1.7.0-2) ... Setting up libunistring5:s390x (1.3-2) ... Setting up libpng16-16t64:s390x (1.6.48-1) ... Setting up libatomic1:s390x (14.2.0-19) ... Setting up libuuid1:s390x (2.41-5) ... Setting up libsensors5:s390x (1:3.6.2-2) ... Setting up libpcre2-8-0:s390x (10.45-1) ... Setting up libk5crypto3:s390x (1.21.3-5) ... Setting up libvulkan1:s390x (1.4.309.0-1) ... Setting up libudev1:s390x (257.7-1) ... Setting up libubsan1:s390x (14.2.0-19) ... Setting up libhogweed6t64:s390x (3.10.1-1) ... Setting up libcrypt-dev:s390x (1:4.4.38-1) ... Setting up libxcb-randr0:s390x (1.17.0-2+b1) ... Setting up libc6-dev:s390x (2.41-9) ... Setting up libx11-6:s390x (2:1.8.12-1) ... Setting up libglu1-mesa:s390x (9.0.2-1.1+b3) ... Setting up libicu76:s390x (76.1-4) ... Setting up libopengl-dev:s390x (1.7.0-1+b2) ... Setting up libgcc-14-dev:s390x (14.2.0-19) ... Setting up libstdc++-14-dev:s390x (14.2.0-19) ... Setting up libsm6:s390x (2:1.2.6-1) ... Setting up libxml2:s390x (2.12.7+dfsg+really2.9.14-1) ... Setting up libxcb-dri3-0:s390x (1.17.0-2+b1) ... Setting up libllvm19:s390x (1:19.1.7-3+b1) ... Setting up libx11-xcb1:s390x (2:1.8.12-1) ... Setting up mesa-libgallium:s390x (25.0.7-2) ... Setting up libvulkan-dev:s390x (1.4.309.0-1) ... Setting up libxcb1-dev:s390x (1.17.0-2+b1) ... Setting up libxrender1:s390x (1:0.9.12-1) ... Setting up libgbm1:s390x (25.0.7-2) ... Setting up libssl3t64:s390x (3.5.0-2) ... Setting up libgl1-mesa-dri:s390x (25.0.7-2) ... Setting up libx11-dev:s390x (2:1.8.12-1) ... Setting up libxext6:s390x (2:1.3.4-1+b3) ... Setting up libidn2-0:s390x (2.3.8-2) ... Setting up libsystemd0:s390x (257.7-1) ... Setting up libxxf86vm1:s390x (1:1.1.4-1+b4) ... Setting up libselinux1:s390x (3.8.1-1) ... Setting up libegl-mesa0:s390x (25.0.7-2) ... Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... Setting up libdbus-1-3:s390x (1.16.2-2) ... Setting up libxext-dev:s390x (2:1.3.4-1+b3) ... Setting up libmount1:s390x (2.41-5) ... Setting up libegl1:s390x (1.7.0-1+b2) ... Setting up libkrb5-3:s390x (1.21.3-5) ... Setting up libfontconfig1:s390x (2.15.0-2.3) ... Setting up libavahi-client3:s390x (0.8-16) ... Setting up libgnutls30t64:s390x (3.8.9-2) ... Setting up libglx-mesa0:s390x (25.0.7-2) ... Setting up libglx0:s390x (1.7.0-1+b2) ... Setting up libglib2.0-0t64:s390x (2.84.3-1) ... /var/lib/dpkg/info/libglib2.0-0t64:s390x.postinst: 37: /usr/lib/s390x-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0t64:s390x.postinst: 38: /usr/lib/s390x-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libgl1:s390x (1.7.0-1+b2) ... Setting up libgssapi-krb5-2:s390x (1.21.3-5) ... Setting up libglx-dev:s390x (1.7.0-1+b2) ... Setting up libharfbuzz0b:s390x (10.2.0-1+b1) ... Setting up libcups2t64:s390x (2.4.10-3) ... Setting up libgl-dev:s390x (1.7.0-1+b2) ... Setting up libgudev-1.0-0:s390x (238-6) ... Setting up libegl-dev:s390x (1.7.0-1+b2) ... Setting up libwacom9:s390x (2.14.0-1) ... Setting up libqt5core5t64:s390x (5.15.15+dfsg-6) ... Setting up libglu1-mesa-dev:s390x (9.0.2-1.1+b3) ... Setting up libqt5sql5t64:s390x (5.15.15+dfsg-6) ... Setting up libinput10:s390x (1.28.1-1) ... Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-6) ... Setting up libqt5concurrent5t64:s390x (5.15.15+dfsg-6) ... Setting up libqt5network5t64:s390x (5.15.15+dfsg-6) ... Setting up libqt5xml5t64:s390x (5.15.15+dfsg-6) ... Setting up libqt5test5t64:s390x (5.15.15+dfsg-6) ... Setting up libqt5gui5t64:s390x (5.15.15+dfsg-6) ... Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-6) ... Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-6) ... Setting up qtbase5-dev:s390x (5.15.15+dfsg-6) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-s390x-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-s390x-cross_14.2.0-19cross1 linux-libc-dev_6.12.33-1 Package versions: apt_3.0.3 apt-utils_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-s390x-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-s390x-linux-gnu_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-s390x-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-s390x_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 fontconfig_2.15.0-2.3 fontconfig-config_2.15.0-2.3 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-s390x-linux-gnu_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-s390x-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-s390x-linux-gnu_14.2.0-19cross1 gcc-14-s390x-linux-gnu-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-s390x-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-s390x-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-s390x-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libavahi-client3_0.8-16 libavahi-common-data_0.8-16 libavahi-common3_0.8-16 libbinutils_2.44-3 libblkid1_2.41-5 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libc6-dev-s390x-cross_2.41-8cross1 libc6-s390x-cross_2.41-8cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libclang1-19_1:19.1.7-3+b1 libcom-err2_1.47.2-3+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcups2t64_2.4.10-3 libdb5.3t64_5.3.28+dfsg2-9 libdbus-1-3_1.16.2-2 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdouble-conversion3_3.3.1-1 libdpkg-perl_1.22.20 libdrm-amdgpu1_2.4.124-2 libdrm-common_2.4.124-2 libdrm-intel1_2.4.124-2 libdrm2_2.4.124-2 libedit2_3.1-20250104-1 libegl-dev_1.7.0-1+b2 libegl-mesa0_25.0.7-2 libegl1_1.7.0-1+b2 libelf1t64_0.192-4 libevdev2_1.13.4+dfsg-1 libexpat1_2.7.1-1 libfakeroot_1.37.1.2-1 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libfontconfig1_2.15.0-2.3 libfreetype6_2.13.3+dfsg-1 libgbm1_25.0.7-2 libgcc-14-dev_14.2.0-19 libgcc-14-dev-s390x-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-s390x-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgl-dev_1.7.0-1+b2 libgl1_1.7.0-1+b2 libgl1-mesa-dri_25.0.7-2 libglib2.0-0t64_2.84.3-1 libglu1-mesa_9.0.2-1.1+b3 libglu1-mesa-dev_9.0.2-1.1+b3 libglvnd0_1.7.0-1+b2 libglx-dev_1.7.0-1+b2 libglx-mesa0_25.0.7-2 libglx0_1.7.0-1+b2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-s390x-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgraphite2-3_1.3.14-2+b1 libgssapi-krb5-2_1.21.3-5 libgudev-1.0-0_238-6 libharfbuzz0b_10.2.0-1+b1 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libice6_2:1.1.1-1 libicu76_76.1-4 libidn2-0_2.3.8-2 libinput-bin_1.28.1-1 libinput10_1.28.1-1 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-s390x-cross_14.2.0-19cross1 libjansson4_2.14-2+b3 libjpeg62-turbo_1:2.1.5-4 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 liblastlog2-2_2.41-5 libllvm19_1:19.1.7-3+b1 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmd4c0_0.5.2-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libmtdev1t64_1.1.7-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libopengl-dev_1.7.0-1+b2 libopengl0_1.7.0-1+b2 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpciaccess0_0.17-3+b3 libpcre2-16-0_10.45-1 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libpng16-16t64_1.6.48-1 libpython3-stdlib_3.13.5-1 libpython3.13-minimal_3.13.5-2 libpython3.13-stdlib_3.13.5-2 libqt5concurrent5t64_5.15.15+dfsg-6 libqt5core5t64_5.15.15+dfsg-6 libqt5dbus5t64_5.15.15+dfsg-6 libqt5designer5_5.15.15-6 libqt5designercomponents5_5.15.15-6 libqt5gui5t64_5.15.15+dfsg-6 libqt5help5_5.15.15-6 libqt5network5t64_5.15.15+dfsg-6 libqt5printsupport5t64_5.15.15+dfsg-6 libqt5qml5_5.15.15+dfsg-3 libqt5qmlmodels5_5.15.15+dfsg-3 libqt5quick5_5.15.15+dfsg-3 libqt5quickwidgets5_5.15.15+dfsg-3 libqt5sql5-sqlite_5.15.15+dfsg-6 libqt5sql5t64_5.15.15+dfsg-6 libqt5test5t64_5.15.15+dfsg-6 libqt5widgets5t64_5.15.15+dfsg-6 libqt5xml5t64_5.15.15+dfsg-6 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsensors-config_1:3.6.2-2 libsensors5_1:3.6.2-2 libsepol2_3.8.1-1 libsframe1_2.44-3 libsm6_2:1.2.6-1 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-s390x-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-s390x-cross_14.2.0-19cross1 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libubsan1-s390x-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 libuuid1_2.41-5 libvulkan-dev_1.4.309.0-1 libvulkan1_1.4.309.0-1 libwacom-common_2.14.0-1 libwacom9_2.14.0-1 libwayland-client0_1.23.1-3 libwayland-server0_1.23.1-3 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libx11-xcb1_2:1.8.12-1 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb-dri3-0_1.17.0-2+b1 libxcb-glx0_1.17.0-2+b1 libxcb-icccm4_0.4.2-1 libxcb-image0_0.4.0-2+b2 libxcb-keysyms1_0.4.1-1 libxcb-present0_1.17.0-2+b1 libxcb-randr0_1.17.0-2+b1 libxcb-render-util0_0.3.10-1 libxcb-render0_1.17.0-2+b1 libxcb-shape0_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb-sync1_1.17.0-2+b1 libxcb-util1_0.4.1-1 libxcb-xfixes0_1.17.0-2+b1 libxcb-xinerama0_1.17.0-2+b1 libxcb-xinput0_1.17.0-2+b1 libxcb-xkb1_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxkbcommon-x11-0_1.7.0-2 libxkbcommon0_1.7.0-2 libxml2_2.12.7+dfsg+really2.9.14-1 libxrender1_1:0.9.12-1 libxshmfence1_1.3.3-1 libxxf86vm1_1:1.1.4-1+b4 libxxhash0_0.8.3-2 libz3-4_4.13.3-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 linux-libc-dev-s390x-cross_6.12.29-1cross1 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 mesa-libgallium_25.0.7-2 mount_2.41-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 po-debconf_1.0.21+nmu1 python3_3.13.5-1 python3-minimal_3.13.5-1 python3.13_3.13.5-2 python3.13-minimal_3.13.5-2 qdoc-qt5_5.15.15-6 qhelpgenerator-qt5_5.15.15-6 qt5-assistant_5.15.15-6 qt5-qmake_5.15.15+dfsg-6 qt5-qmake-bin_5.15.15+dfsg-6 qtattributionsscanner-qt5_5.15.15-6 qtbase5-dev_5.15.15+dfsg-6 qtbase5-dev-tools_5.15.15+dfsg-6 qtchooser_66-2 qttools5-dev-tools_5.15.15-6 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 shared-mime-info_2.4-5+b2 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-4 util-linux_2.41-5 x11-common_1:7.7+24 x11proto-dev_2024.1-1 xkb-data_2.42-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clustalx Binary: clustalx Architecture: any Version: 2.1+lgpl-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.clustal.org/clustal2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/clustalx Vcs-Git: https://salsa.debian.org/med-team/clustalx.git Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Package-List: clustalx deb science optional arch=any Checksums-Sha1: 63196a4e113a22e5e575f223d76b7406f4f70795 341649 clustalx_2.1+lgpl.orig.tar.gz b7b02b1250b121b5162e6aa0e43a931c1518401e 15224 clustalx_2.1+lgpl-9.debian.tar.xz Checksums-Sha256: e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 341649 clustalx_2.1+lgpl.orig.tar.gz a72891b756770c26939b8dc96afd800dd2156057a47caa5f4085b53d362e8011 15224 clustalx_2.1+lgpl-9.debian.tar.xz Files: 5b1f2f1cc8e939411ab0f934cafa072a 341649 clustalx_2.1+lgpl.orig.tar.gz 6a04d1877358fa582cf4897c5296c45c 15224 clustalx_2.1+lgpl-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/KtjoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHcRg/8DE5lfxYDBGiO+4AQDpadrU1LFY+oeF8K 8FMaXTtrHFs3XOzd6Hph9Xv52WksJe5rDy9235r19UVhCrvCnq3VmcqTFgus/fCQ ZjPaxMDpllLS5vJIRqySjE8mJpW7i1nFnbv7WEfTF1pUfzdS1QHOnMTVLPfJE7P0 V2z6/5cF+apO/ifBubKGcjtpX35JtppnwOfWZ2tYG6RbXjag0ZyKsx+joZtmzu8E MnF/lLqNdIXccon5v8nndh961W3VLDAdn4hQy5emD135zF3ggqgRrGnknXnVVZZA o3JL8W7HHkDpgYBMDWNBrhlEvg0C6XweQS58gBxOs6+/hRTrxnBLXOc9+6780Bax jlp0o1h9qUD60fNYqjJnmuyVR3bBkfxZVYxIkNp1qslrxK4CaPN7yYIIg1g9bIt6 4jlgj2WGgvDF1PbZ1GwqqOqDiJbdhtKmUV2dD3R+5hde4Sl4msuK2ydtb7yVkvnm dD3GOhuipZSCJl4J/LW0IeVZ2535nUkJda2sW19tfWGB7+WajkeD4ZXnCw+xRoL3 cjU67dhnc97DXyDOcjFHdcduZH/jOTgDNxqL5zAV/oHHiewPg9Ey3gnX1/QSXfPc iNz2XPyn+vbU3vJW1t9zwKdyc+M5+upY9wXNgc7tWhMwFeaD0wT+3ekh4Xsa0Ukm WzSDicww5io= =5xFa -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./clustalx_2.1+lgpl-9.dsc: no acceptable signature found dpkg-source: info: extracting clustalx in /<> dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.wRwiq0HWSG/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-0d286ac3-aa6e-478c-93c1-6b2809967957 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f moc_* dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure s390x-linux-gnu-qmake -makefile -spec linux-g\+\+ "QMAKE_CFLAGS_RELEASE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] 48 | void AlignmentParameters::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qabstractanimation.h:43, from /usr/include/s390x-linux-gnu/qt5/QtCore/QtCore:6, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 588 | for(i = 0; i < len && i < gapMask->size(); i++) | ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 645 | for (i = 0; i < len && i < _secStructMask->size();i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 652 | for(i = 0; i < len && i < ssMask.size(); i++) | ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] 781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) | ~~~~~~~~~~~~~~~^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] 170 | bool blackAndWhite; | ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] 161 | std::vector* selectedColoredRes; | ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] 65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) | ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 225 | for(unsigned int j = 0; j < lengthLongestSeq; j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 235 | if(code >= 0 && code < conservationPixmaps->size()) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 280 | if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) | ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] 215 | int codeForSpace = clustalw::userParameters->resIndex( | ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 333 | if(i < secStructPixmaps->size() && i < secStructInfo.size()) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:344:34: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 344 | fontMetrics.width(secStructInfo[i])/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/s390x-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 569 | if(selectedRes >= selectedColoredRes->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 689 | for(int j = 1; j <= strongGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 693 | for(int j = 1; j <= weakGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 700 | if((i + _fRes - 1 < (*alignment)[j].size()) && | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 701 | (i + _fRes - 1 < (*alignment)[_fSeq].size())) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 725 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 737 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 760 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 771 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 878 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 927 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1039 | for(int j = 0; j < aminoAcid.size(); j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:1051:49: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1051 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1079:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1079 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1089:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1089 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1099:45: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1099 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1118:30: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1118 | fontMetrics.width(currentChar)/2, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:65, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QPushButton:1, from AlignOutputFileNames.cpp:16: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:65, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QPushButton:1, from BootstrapTreeDialog.cpp:8: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] 74 | // tr("colorrules not found in the parameter file, using\ | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 85 | QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] 175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 160 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] 174 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] 157 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] 158 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 197 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] 211 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] 194 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] 195 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 229 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 238 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | if(colorNum > 0 && colorNum - 1 < colorPar.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void ColumnScoreParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function ‘std::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 147 | catch(ifstream::failure e) | ^ HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] 61 | int i, number, nlines; | ^~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 180 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 198 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:208:47: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 208 | (fontMetrics.width(QString::number(rulerNum))) / 2; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qlabel.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ HistogramWidget.cpp:241:61: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 241 | (fontMetrics.width(QString::number(0))) / 2, yPos, boxWidth, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] 51 | void LowScoringSegParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qcoreapplication.h:46, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qapplication.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QApplication:1, from main.cpp:19: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qabstractanimation.h:43, from /usr/include/s390x-linux-gnu/qt5/QtCore/QtCore:6, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] 198 | void MainWindow::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] 1454 | void MainWindow::writeViewer1AsPostscript(int type) | ~~~~^~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] 74 | void PairwiseParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(res.isLetter() && resNumber.size() > i - data->firstSeq) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 307 | if(res.isLetter() && resNumber.size() > seq) | ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 421 | if(res.isLetter() && resNumber.size() > i) | ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] 55 | int err; | ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] 73 | int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] 74 | int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 587 | if(data->nameHeader.size() > ix) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 730 | for(i = fr; i <= lr && i < ruler.length(); i++) | ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] 781 | int psX, psY, curveBottom; | ^~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:65, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] 375 | QRect redrawRect = event->rect(); | ^~~~~~~~~~ SeqNameWidget.cpp: In member function ‘int SeqNameWidget::setMaxNameLength()’: SeqNameWidget.cpp:443:43: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 443 | int length = fontMetrics.width(QString(name.c_str())); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/s390x-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SeqNameWidget.cpp:58: /usr/include/s390x-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:65, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QPushButton:1, from TreeOutputFileNames.cpp:7: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from /usr/include/s390x-linux-gnu/qt5/QtCore/qvarlengtharray.h:52, from /usr/include/s390x-linux-gnu/qt5/QtCore/qmetatype.h:48, from /usr/include/s390x-linux-gnu/qt5/QtCore/qobject.h:54, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:65, from /usr/include/s390x-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/s390x-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/s390x-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/fileInput/FileReader.h:11: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 162 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 837 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetProfile1()’: clustalW/alignment/Alignment.cpp:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 47 | register int sl; /* which have code = gap_pos2 */ | ^~ clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetProfile2()’: clustalW/alignment/Alignment.cpp:122:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 122 | register int sl; /* which have code = gap_pos2 */ | ^~ clustalW/alignment/Alignment.cpp: In member function ‘void clustalw::Alignment::resetAlign()’: clustalW/alignment/Alignment.cpp:617:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 617 | register int sl; | ^~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] 1715 | SeqArray::iterator posToAddTo = sectionToRealign.begin(); | ^~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/alignment/AlignmentOutput.h:20: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 512 | bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 535 | string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 673 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 868 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1027 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1156 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1445 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 1560 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2095 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2102 | catch(exception e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’: clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] 2351 | catch(VectorOutOfRange e) | ^ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp clustalW/fileInput/FileParser.cpp: In member function ‘void clustalw::FileParser::fillCharTab()’: clustalW/fileInput/FileParser.cpp:37:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 37 | register int i; | ^ clustalW/fileInput/FileParser.cpp:38:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 38 | register char c; | ^ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/fileInput/FileReader.h:11: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 155 | auto_ptr fileParser; // Means we dont need to delete it! | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 426 | void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)’: clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 555 | catch(exception ex) | ^~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 34 | vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] 199 | Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 444 | void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] 446 | int &structPenalties, int length) | ~~~~^~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] 240 | void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function ‘std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds=] 106 | delim[1] = 0; | ~~~~~~~^ clustalW/general/ClustalWResources.cpp:104:10: note: while referencing ‘delim’ 104 | char delim[1]; | ^~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/general/OutputFile.h:8: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] 33 | UserParameters::UserParameters(bool log) | ~~~~~^~~ clustalW/general/UserParameters.cpp: In member function ‘int clustalw::UserParameters::resIndex(std::string, char)’: clustalW/general/UserParameters.cpp:475:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 475 | register int i; | ^ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function ‘char* clustalw::Utility::rTrim(char*)’: clustalW/general/Utility.cpp:53:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | register int p; | ^ clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 251 | int n; | ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] 519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 221 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/interface/../fileInput/FileReader.h:11: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/interface/../fileInput/FileReader.h:11: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’: clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 41 | catch(bad_alloc) | ^~~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] 520 | clustalObj->getHelp('C'); | ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here 521 | case 'Q': | ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1190 | system(lin1.c_str()); | ~~~~~~^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/multipleAlign/../tree/TreeInterface.h:17: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 170 | int count; | ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | tmpnam (buffer); | ~~~~~~~^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] 340 | int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] 359 | string phylipName) | ~~~~~~~^~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function ‘void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)’: clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] 372 | if ((ix < 0) || (ix > _maxAA)) | ~~~^~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1657 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] 1717 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized [-Wmaybe-uninitialized] 1103 | return (maxRes); | ^ clustalW/substitutionMatrix/SubMatrix.cpp:998:9: note: ‘n’ was declared here 998 | int n, llimit, ulimit; | ^ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/tree/ClusterTree.h:16: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp clustalW/tree/NJTree.cpp: In member function ‘virtual void clustalw::NJTree::generateTree(clustalw::PhyloTree*, clustalw::DistMatrix*, clustalw::SeqInfo*, std::ofstream*)’: clustalW/tree/NJTree.cpp:164:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 164 | register int i; | ^ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/tree/Tree.h:15: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 278 | auto_ptr Tree::createSets(int firstSeq, int lastSeq) | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 280 | auto_ptr progAlignSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/tree/TreeInterface.h:17: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 31 | auto_ptr | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 195 | auto_ptr | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 200 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 208 | auto_ptr | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 214 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 439 | auto_ptr | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 445 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 485 | auto_ptr | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 490 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 503 | auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 506 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/tree/ClusterTree.h:16: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/tree/UPGMA/../ClusterTree.h:16: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17 | auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 21 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:10: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27 | auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -dM -E -o moc_predefs.h /usr/lib/s390x-linux-gnu/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from moc_AlignOutputFileNames.cpp:9: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from moc_BootstrapTreeDialog.cpp:9: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from moc_mainwindow.cpp:9: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from moc_TreeOutputFileNames.cpp:9: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/moc_predefs.h -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -I/<> -I/<> -I/<>/clustalW/general -I/<>/clustalW/substitutionMatrix -I/<>/clustalW/alignment -I/<>/clustalW -I/<>/clustalW/fileInput -I/<>/clustalW/interface -I/<>/clustalW/pairwise -I/<>/clustalW/multipleAlign -I/<>/clustalW/tree -I/<>/clustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I/usr/s390x-linux-gnu/include/c++/14 -I/usr/s390x-linux-gnu/include/c++/14/s390x-linux-gnu -I/usr/s390x-linux-gnu/include/c++/14/backward -I/usr/lib/gcc-cross/s390x-linux-gnu/14/include -I/usr/s390x-linux-gnu/include -I/usr/include/s390x-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp s390x-linux-gnu-g++ -c -pipe -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/s390x-linux-gnu/qt5 -I/usr/include/s390x-linux-gnu/qt5/QtWidgets -I/usr/include/s390x-linux-gnu/qt5/QtGui -I/usr/include/s390x-linux-gnu/qt5/QtXml -I/usr/include/s390x-linux-gnu/qt5/QtCore -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/memory:78, from moc_WritePostscriptFile.cpp:9: /usr/s390x-linux-gnu/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ s390x-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o /usr/lib/s390x-linux-gnu/libQt5Widgets.so /usr/lib/s390x-linux-gnu/libQt5Gui.so /usr/lib/s390x-linux-gnu/libQt5Xml.so /usr/lib/s390x-linux-gnu/libQt5Core.so -lGL -lpthread /usr/lib/gcc-cross/s390x-linux-gnu/14/../../../../s390x-linux-gnu/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231:(.text+0x1370): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/clustalx/ -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-9_s390x.deb'. dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-9_s390x.deb'. dpkg-genbuildinfo --build=any -O../clustalx_2.1+lgpl-9_s390x.buildinfo dpkg-genchanges --build=any -O../clustalx_2.1+lgpl-9_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-01T18:41:45Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------------------ I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-9_s390x.changes: ---------------------------------- Format: 1.8 Date: Fri, 04 Dec 2020 22:57:37 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.1+lgpl-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.1+lgpl-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) * No quotet entry in mailcap Checksums-Sha1: 2bf0561a69dd5a5caed3aa3d128882576e9e2096 9681448 clustalx-dbgsym_2.1+lgpl-9_s390x.deb 6acf5f89e70e5d97a8f1b368ecbfa17907af958c 9586 clustalx_2.1+lgpl-9_s390x.buildinfo c00f5a03dcbd62e5095da85983b8187c1e751803 466052 clustalx_2.1+lgpl-9_s390x.deb Checksums-Sha256: 293d543a26fa854d461b1dcea5f2ebfd8ab5edead63c89b14167d30a02369d66 9681448 clustalx-dbgsym_2.1+lgpl-9_s390x.deb 723669e446aca8f3478fd931d40645b560d0e20b5c5b969eab4574584b008605 9586 clustalx_2.1+lgpl-9_s390x.buildinfo 7d6a942bb8bbaefe5c38ac961168b4389d511d94fd7464f7c1096282252d7cc2 466052 clustalx_2.1+lgpl-9_s390x.deb Files: e11b758f1ffc77781fe7b1ad965a5d18 9681448 debug optional clustalx-dbgsym_2.1+lgpl-9_s390x.deb cd4b1e69802f90017ec2948ea80e3ef7 9586 science optional clustalx_2.1+lgpl-9_s390x.buildinfo 6d678b978197df4bddceffeb79a7c0ac 466052 science optional clustalx_2.1+lgpl-9_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalx Binary: clustalx clustalx-dbgsym Architecture: s390x Version: 2.1+lgpl-9 Checksums-Md5: e11b758f1ffc77781fe7b1ad965a5d18 9681448 clustalx-dbgsym_2.1+lgpl-9_s390x.deb 6d678b978197df4bddceffeb79a7c0ac 466052 clustalx_2.1+lgpl-9_s390x.deb Checksums-Sha1: 2bf0561a69dd5a5caed3aa3d128882576e9e2096 9681448 clustalx-dbgsym_2.1+lgpl-9_s390x.deb c00f5a03dcbd62e5095da85983b8187c1e751803 466052 clustalx_2.1+lgpl-9_s390x.deb Checksums-Sha256: 293d543a26fa854d461b1dcea5f2ebfd8ab5edead63c89b14167d30a02369d66 9681448 clustalx-dbgsym_2.1+lgpl-9_s390x.deb 7d6a942bb8bbaefe5c38ac961168b4389d511d94fd7464f7c1096282252d7cc2 466052 clustalx_2.1+lgpl-9_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 01 Jul 2025 18:41:45 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig (= 2.15.0-2.3), fontconfig-config (= 2.15.0-2.3), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libavahi-client3 (= 0.8-16), libavahi-common-data (= 0.8-16), libavahi-common3 (= 0.8-16), libbinutils (= 2.44-3), libblkid1 (= 2.41-5), libbrotli1 (= 1.1.0-2+b7), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcc1-0 (= 14.2.0-19), libclang1-19 (= 1:19.1.7-3+b1), libcom-err2 (= 1.47.2-3+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcups2t64 (= 2.4.10-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdbus-1-3 (= 1.16.2-2), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdouble-conversion3 (= 3.3.1-1), libdpkg-perl (= 1.22.20), libdrm-amdgpu1 (= 2.4.124-2), libdrm-common (= 2.4.124-2), libdrm-intel1 (= 2.4.124-2), libdrm2 (= 2.4.124-2), libedit2 (= 3.1-20250104-1), libegl-dev (= 1.7.0-1+b2), libegl-mesa0 (= 25.0.7-2), libegl1 (= 1.7.0-1+b2), libelf1t64 (= 0.192-4), libevdev2 (= 1.13.4+dfsg-1), libexpat1 (= 2.7.1-1), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libfontconfig1 (= 2.15.0-2.3), libfreetype6 (= 2.13.3+dfsg-1), libgbm1 (= 25.0.7-2), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgl-dev (= 1.7.0-1+b2), libgl1 (= 1.7.0-1+b2), libgl1-mesa-dri (= 25.0.7-2), libglib2.0-0t64 (= 2.84.3-1), libglu1-mesa (= 9.0.2-1.1+b3), libglu1-mesa-dev (= 9.0.2-1.1+b3), libglvnd0 (= 1.7.0-1+b2), libglx-dev (= 1.7.0-1+b2), libglx-mesa0 (= 25.0.7-2), libglx0 (= 1.7.0-1+b2), libgmp10 (= 2:6.3.0+dfsg-3), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgraphite2-3 (= 1.3.14-2+b1), libgssapi-krb5-2 (= 1.21.3-5), libgudev-1.0-0 (= 238-6), libharfbuzz0b (= 10.2.0-1+b1), libhogweed6t64 (= 3.10.1-1), libhwasan0 (= 14.2.0-19), libice6 (= 2:1.1.1-1), libicu76 (= 76.1-4), libidn2-0 (= 2.3.8-2), libinput-bin (= 1.28.1-1), libinput10 (= 1.28.1-1), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libjpeg62-turbo (= 1:2.1.5-4), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblastlog2-2 (= 2.41-5), libllvm19 (= 1:19.1.7-3+b1), liblsan0 (= 14.2.0-19), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmd4c0 (= 0.5.2-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libmtdev1t64 (= 1.1.7-1), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libopengl-dev (= 1.7.0-1+b2), libopengl0 (= 1.7.0-1+b2), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpciaccess0 (= 0.17-3+b3), libpcre2-16-0 (= 10.45-1), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-3), libpipeline1 (= 1.5.8-1), libpng16-16t64 (= 1.6.48-1), libpython3-stdlib (= 3.13.5-1), libpython3.13-minimal (= 3.13.5-2), libpython3.13-stdlib (= 3.13.5-2), libqt5concurrent5t64 (= 5.15.15+dfsg-6), libqt5core5t64 (= 5.15.15+dfsg-6), libqt5dbus5t64 (= 5.15.15+dfsg-6), libqt5designer5 (= 5.15.15-6), libqt5designercomponents5 (= 5.15.15-6), libqt5gui5t64 (= 5.15.15+dfsg-6), libqt5help5 (= 5.15.15-6), libqt5network5t64 (= 5.15.15+dfsg-6), libqt5printsupport5t64 (= 5.15.15+dfsg-6), libqt5qml5 (= 5.15.15+dfsg-3), libqt5qmlmodels5 (= 5.15.15+dfsg-3), libqt5quick5 (= 5.15.15+dfsg-3), libqt5quickwidgets5 (= 5.15.15+dfsg-3), libqt5sql5-sqlite (= 5.15.15+dfsg-6), libqt5sql5t64 (= 5.15.15+dfsg-6), libqt5test5t64 (= 5.15.15+dfsg-6), libqt5widgets5t64 (= 5.15.15+dfsg-6), libqt5xml5t64 (= 5.15.15+dfsg-6), libquadmath0 (= 14.2.0-19), libreadline8t64 (= 8.2-6), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2), libsframe1 (= 2.44-3), libsm6 (= 2:1.2.6-1), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.7-1), libtasn1-6 (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libvulkan-dev (= 1.4.309.0-1), libvulkan1 (= 1.4.309.0-1), libwacom-common (= 2.14.0-1), libwacom9 (= 2.14.0-1), libwayland-client0 (= 1.23.1-3), libwayland-server0 (= 1.23.1-3), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libx11-dev (= 2:1.8.12-1), libx11-xcb1 (= 2:1.8.12-1), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb-dri3-0 (= 1.17.0-2+b1), libxcb-glx0 (= 1.17.0-2+b1), libxcb-icccm4 (= 0.4.2-1), libxcb-image0 (= 0.4.0-2+b2), libxcb-keysyms1 (= 0.4.1-1), libxcb-present0 (= 1.17.0-2+b1), libxcb-randr0 (= 1.17.0-2+b1), libxcb-render-util0 (= 0.3.10-1), libxcb-render0 (= 1.17.0-2+b1), libxcb-shape0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb-sync1 (= 1.17.0-2+b1), libxcb-util1 (= 0.4.1-1), libxcb-xfixes0 (= 1.17.0-2+b1), libxcb-xinerama0 (= 1.17.0-2+b1), libxcb-xinput0 (= 1.17.0-2+b1), libxcb-xkb1 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxkbcommon-x11-0 (= 1.7.0-2), libxkbcommon0 (= 1.7.0-2), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libxrender1 (= 1:0.9.12-1), libxshmfence1 (= 1.3.3-1), libxxf86vm1 (= 1:1.1.4-1+b4), libz3-4 (= 4.13.3-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 13.0.0), mesa-libgallium (= 25.0.7-2), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-3), perl-base (= 5.40.1-3), perl-modules-5.40 (= 5.40.1-3), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.5-1), python3-minimal (= 3.13.5-1), python3.13 (= 3.13.5-2), python3.13-minimal (= 3.13.5-2), qdoc-qt5 (= 5.15.15-6), qhelpgenerator-qt5 (= 5.15.15-6), qt5-assistant (= 5.15.15-6), qt5-qmake (= 5.15.15+dfsg-6), qt5-qmake-bin (= 5.15.15+dfsg-6), qtattributionsscanner-qt5 (= 5.15.15-6), qtbase5-dev (= 5.15.15+dfsg-6), qtbase5-dev-tools (= 5.15.15+dfsg-6), qtchooser (= 66-2), qttools5-dev-tools (= 5.15.15-6), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), shared-mime-info (= 2.4-5+b2), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-4), util-linux (= 2.41-5), x11-common (= 1:7.7+24), x11proto-dev (= 2024.1-1), xkb-data (= 2.42-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1607119057" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx-dbgsym_2.1+lgpl-9_s390x.deb ------------------------------------ new Debian package, version 2.0. size 9681448 bytes: control archive=540 bytes. 382 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: clustalx-dbgsym Source: clustalx Version: 2.1+lgpl-9 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 10972 Depends: clustalx (= 2.1+lgpl-9) Section: debug Priority: optional Description: debug symbols for clustalx Build-Ids: 124fbaff9705e11a7023367f307055496ddff33a drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/debug/.build-id/12/ -rw-r--r-- root/root 11224344 2020-12-04 21:57 ./usr/lib/debug/.build-id/12/4fbaff9705e11a7023367f307055496ddff33a.debug drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx-dbgsym -> clustalx clustalx_2.1+lgpl-9_s390x.deb ----------------------------- new Debian package, version 2.0. size 466052 bytes: control archive=1456 bytes. 1558 bytes, 27 lines control 874 bytes, 13 lines md5sums Package: clustalx Version: 2.1+lgpl-9 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1485 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libqt5core5t64 (>= 5.7.0), libqt5gui5t64 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5t64 (>= 5.0.2), libqt5xml5t64 (>= 5.0.2), libstdc++6 (>= 14) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2020-12-04 21:57 ./ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/bin/ -rwxr-xr-x root/root 1413960 2020-12-04 21:57 ./usr/bin/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/lib/mime/packages/ -rw-r--r-- root/root 112 2020-12-04 21:57 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/applications/ -rw-r--r-- root/root 876 2020-12-04 21:57 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2020-12-04 21:57 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 790 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 3440 2020-12-04 21:57 ./usr/share/doc/clustalx/changelog.gz -rw-r--r-- root/root 1860 2020-12-04 21:57 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2020-12-04 21:57 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/ drwxr-xr-x root/root 0 2020-12-04 21:57 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2020-12-04 21:57 ./usr/share/mime/packages/clustalx.xml lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1348 B] Get:5 copy:/<>/apt_archive ./ Packages [1427 B] Fetched 3390 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip procps t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl libldap-common liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip procps sbuild-build-depends-lintian-dummy:s390x t1utils ucf unzip 0 upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 17.0 MB of archives. After this operation, 68.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get:4 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get:5 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:7 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:8 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:17 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.22-1 [63.1 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.5-1 [226 kB] Get:24 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.5-1 [538 kB] Get:25 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:29 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.7-21+b1 [129 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB] Get:32 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.7-21+b1 [635 kB] Get:33 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.18.0-1 [3125 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.42 [68.3 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:44 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:49 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.68-1 [217 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:53 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:63 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-2 [32.6 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:83 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:84 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-4 [25.6 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:92 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:99 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:100 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:103 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:111 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:112 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:113 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:114 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB] Get:115 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:118 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:123 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:134 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:136 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.48-2 [65.7 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:140 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-3 [20.1 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.903.0+ds-1 [35.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-3 [65.0 kB] Get:152 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:153 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:154 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:155 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:156 http://localhost:3142/debian unstable/main amd64 lintian all 2.122.0 [1063 kB] Preconfiguring packages ... 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Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libnpth0t64:amd64 (1.8-3) ... Setting up libunicode-utf8-perl (0.62-3) ... Setting up libmouse-perl:amd64 (2.5.11-1+b1) ... Setting up libgpg-error0:amd64 (1.51-4) ... Setting up libdata-messagepack-perl (1.02-2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libxmlb2:amd64 (0.3.22-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-29) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.903.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.67-1) ... Setting up libproc2-0:amd64 (2:4.0.4-8) ... Setting up libvariable-magic-perl (0.64-1+b1) ... 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Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libstemmer0d:amd64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.0-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.18.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libksba8:amd64 (1.6.7-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libappstream5:amd64 (1.0.5-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.48-2) ... Setting up appstream (1.0.5-1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0052) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.4.7-21+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.68-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.122.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 229 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 24 Job: clustalx_2.1+lgpl-9 Lintian: pass Machine Architecture: amd64 Package: clustalx Package-Time: 264 Source-Version: 2.1+lgpl-9 Space: n/a Status: successful Version: 2.1+lgpl-9 -------------------------------------------------------------------------------- Finished at 2025-07-01T18:41:45Z Build needed 00:04:24, no disk space