sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | comet-ms 2019015+cleaned1-4 (i386) Wed, 10 Jan 2024 15:24:11 +0000 | +==============================================================================+ Package: comet-ms Version: 2019015+cleaned1-4 Source Version: 2019015+cleaned1-4 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.ctt9TlkduJ... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/comet-ms-5Sy34Q/resolver-lH9bZL' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.4 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9526 kB] Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [9486 kB] Fetched 29.6 MB in 7s (3976 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libperl5.38 perl-modules-5.38 The following packages will be upgraded: apt gpgv libapt-pkg6.0 perl perl-base 5 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 11.5 MB of archives. After this operation, 51.8 MB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 perl-modules-5.38 all 5.38.2-2 [2903 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libperl5.38 arm64 5.38.2-2 [4095 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 perl arm64 5.38.2-2 [235 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 perl-base arm64 5.38.2-2 [1509 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg6.0 arm64 2.7.8 [874 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 gpgv arm64 2.2.40-1.1+b1 [631 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 apt arm64 2.7.8 [1288 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.5 MB in 0s (72.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12088 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-2_arm64.deb ... Unpacking perl (5.38.2-2) over (5.36.0-10+b1) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-2) ... Selecting previously unselected package libperl5.38:arm64. Preparing to unpack .../libperl5.38_5.38.2-2_arm64.deb ... Unpacking libperl5.38:arm64 (5.38.2-2) ... Preparing to unpack .../perl-base_5.38.2-2_arm64.deb ... Unpacking perl-base (5.38.2-2) over (5.36.0-10+b1) ... Setting up perl-base (5.38.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14029 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.8_arm64.deb ... Unpacking libapt-pkg6.0:arm64 (2.7.8) over (2.7.7) ... Setting up libapt-pkg6.0:arm64 (2.7.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14029 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1+b1_arm64.deb ... Unpacking gpgv (2.2.40-1.1+b1) over (2.2.40-1.1) ... Setting up gpgv (2.2.40-1.1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14030 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.8_arm64.deb ... Unpacking apt (2.7.8) over (2.7.7) ... Setting up apt (2.7.8) ... Setting up perl-modules-5.38 (5.38.2-2) ... Setting up libperl5.38:arm64 (5.38.2-2) ... Setting up perl (5.38.2-2) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'comet-ms' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/comet-ms.git Please use: git clone https://salsa.debian.org/debichem-team/comet-ms.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1387 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main comet-ms 2019015+cleaned1-4 (dsc) [2081 B] Get:2 http://mirror.einval.org/debian unstable/main comet-ms 2019015+cleaned1-4 (tar) [1378 kB] Get:3 http://mirror.einval.org/debian unstable/main comet-ms 2019015+cleaned1-4 (diff) [6700 B] Fetched 1387 kB in 0s (4895 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/comet-ms-5Sy34Q/comet-ms-2019015+cleaned1' with '<>' I: NOTICE: Log filtering will replace 'build/comet-ms-5Sy34Q' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dpkg-dev (>= 1.16.1.1), libmstoolkit-dev (>= 82), libmstoolkit-dev (<< 83), docbook-to-man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), dpkg-dev (>= 1.16.1.1), libmstoolkit-dev (>= 82), libmstoolkit-dev (<< 83), docbook-to-man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [803 B] Get:5 copy:/<>/apt_archive ./ Packages [845 B] Fetched 2257 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-13-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dpkg-cross dwz fakeroot file g++-13-i686-linux-gnu g++-i686-linux-gnu gcc-13-base:i386 gcc-13-cross-base gcc-13-i686-linux-gnu gcc-13-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1:i386 libexpat1-dev:i386 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:i386 libgcc-13-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libmstoolkit-dev:i386 libmstoolkit82:i386 libnsl-dev:i386 libnsl2:i386 libosp5 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsqlite3-0:i386 libsqlite3-dev:i386 libssl3:i386 libstdc++-13-dev:i386 libstdc++-13-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-i386-cross m4 man-db opensp po-debconf sensible-utils sgml-base sgml-data ucf xml-core zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make docbook-defguide docbook-dsssl docbook-xml psgml binutils-multiarch g++-13-multilib-i686-linux-gnu gcc-13-doc gcc-13-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386 sqlite3-doc:i386 libstdc++-13-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser doc-base libmail-box-perl sgml-base-doc perlsgml w3-recs libxml2-utils Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl krb5-locales:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-13-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man dpkg-cross dwz fakeroot file g++-13-i686-linux-gnu g++-i686-linux-gnu gcc-13-base:i386 gcc-13-cross-base gcc-13-i686-linux-gnu gcc-13-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1:i386 libexpat1-dev:i386 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:i386 libgcc-13-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libmstoolkit-dev:i386 libmstoolkit82:i386 libnsl-dev:i386 libnsl2:i386 libosp5 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsqlite3-0:i386 libsqlite3-dev:i386 libssl3:i386 libstdc++-13-dev:i386 libstdc++-13-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-i386-cross m4 man-db opensp po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils sgml-base sgml-data ucf xml-core zlib1g:i386 zlib1g-dev:i386 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 96.7 MB of archives. After this operation, 384 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [956 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-6+b1 [15.0 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.20 [19.3 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-2+b1 [314 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.45-2+b1 [100 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-2+b1 [43.2 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-14 [159 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1 [68.8 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-3 [1127 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1+b2 [36.7 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.0-1 [1385 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 gcc-13-i686-linux-gnu-base arm64 13.2.0-7cross2 [41.0 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-13-i686-linux-gnu arm64 13.2.0-7cross2 [9277 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:13.2.0-2 [4160 B] Get:23 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.41.50.20231227-1 [2361 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.37-12cross1 [1339 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 13.2.0-7cross2 [65.9 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 13.2.0-7cross2 [129 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 13.2.0-7cross2 [27.2 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 13.2.0-7cross2 [7376 B] Get:31 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 13.2.0-7cross2 [2469 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 13.2.0-7cross2 [701 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 13.2.0-7cross2 [983 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 13.2.0-7cross2 [229 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-i386-cross all 13.2.0-7cross2 [2496 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 gcc-13-i686-linux-gnu arm64 13.2.0-7cross2 [18.3 MB] Get:37 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:13.2.0-2 [1464 B] Get:38 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.5.8-1cross1 [2014 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.37-12cross1 [1716 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-i386-cross all 13.2.0-7cross2 [2273 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 g++-13-i686-linux-gnu arm64 13.2.0-7cross2 [10.2 MB] Get:42 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:13.2.0-2 [1168 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4 [9223 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b2 [299 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.10 [3480 B] Get:59 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.9 [82.3 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:66 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.190-1+b1 [175 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-14 [1249 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.9 [956 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 sgml-data all 2.0.11+nmu1 [179 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 docbook all 4.5-10 [131 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libosp5 arm64 1.5.2-14 [886 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 opensp arm64 1.5.2-14 [413 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 docbook-to-man arm64 1:2.0.0-45 [75.6 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.32.2-1+b1 [28.3 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.32.2-1+b1 [73.7 kB] Get:80 http://mirror.einval.org/debian unstable/main i386 gcc-13-base i386 13.2.0-9 [41.4 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 13.2.0-9 [65.9 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.37-13 [2626 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 13.2.0-9 [2476 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 13.2.0-9 [7628 B] Get:85 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.36-4 [95.7 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.36-4 [125 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-5 [35.6 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2+b1 [20.4 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-5 [82.6 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-2+b2 [9620 B] Get:91 http://mirror.einval.org/debian unstable/main i386 libssl3 i386 3.1.4-2 [2028 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-5 [359 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-5 [144 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libtirpc3 i386 1.3.4+ds-1 [89.5 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libnsl2 i386 1.3.0-3 [42.1 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libtirpc-dev i386 1.3.4+ds-1 [199 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libnsl-dev i386 1.3.0-3 [70.4 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.37-13 [1720 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libexpat1-dev i386 2.5.0-2+b2 [159 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 13.2.0-9 [132 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 13.2.0-9 [27.6 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 13.2.0-9 [748 kB] Get:104 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 13.2.0-9 [984 kB] Get:105 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 13.2.0-9 [229 kB] Get:106 http://mirror.einval.org/debian unstable/main i386 libgcc-13-dev i386 13.2.0-9 [2496 kB] Get:107 http://mirror.einval.org/debian unstable/main i386 libsqlite3-0 i386 3.44.2-1 [952 kB] Get:108 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.3.dfsg-3 [83.5 kB] Get:109 http://mirror.einval.org/debian unstable/main i386 libmstoolkit82 i386 82-7 [149 kB] Get:110 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg-3 [915 kB] Get:111 http://mirror.einval.org/debian unstable/main i386 libsqlite3-dev i386 3.44.2-1 [1156 kB] Get:112 http://mirror.einval.org/debian unstable/main i386 libmstoolkit-dev i386 82-7 [151 kB] Get:113 http://mirror.einval.org/debian unstable/main i386 libstdc++-13-dev i386 13.2.0-9 [2268 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.7 MB in 1s (83.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14030 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../004-libmagic1_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-2+b1_arm64.deb ... Unpacking file (1:5.45-2+b1) ... 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Unpacking gcc-13-i686-linux-gnu-base:arm64 (13.2.0-7cross2) ... Selecting previously unselected package cpp-13-i686-linux-gnu. Preparing to unpack .../019-cpp-13-i686-linux-gnu_13.2.0-7cross2_arm64.deb ... Unpacking cpp-13-i686-linux-gnu (13.2.0-7cross2) ... Selecting previously unselected package cpp-i686-linux-gnu. Preparing to unpack .../020-cpp-i686-linux-gnu_4%3a13.2.0-2_arm64.deb ... Unpacking cpp-i686-linux-gnu (4:13.2.0-2) ... Selecting previously unselected package cross-config. Preparing to unpack .../021-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package binutils-i686-linux-gnu. Preparing to unpack .../022-binutils-i686-linux-gnu_2.41.50.20231227-1_arm64.deb ... Unpacking binutils-i686-linux-gnu (2.41.50.20231227-1) ... Selecting previously unselected package gcc-13-cross-base. Preparing to unpack .../023-gcc-13-cross-base_13.2.0-7cross2_all.deb ... Unpacking gcc-13-cross-base (13.2.0-7cross2) ... Selecting previously unselected package libc6-i386-cross. Preparing to unpack .../024-libc6-i386-cross_2.37-12cross1_all.deb ... Unpacking libc6-i386-cross (2.37-12cross1) ... Selecting previously unselected package libgcc-s1-i386-cross. Preparing to unpack .../025-libgcc-s1-i386-cross_13.2.0-7cross2_all.deb ... Unpacking libgcc-s1-i386-cross (13.2.0-7cross2) ... Selecting previously unselected package libgomp1-i386-cross. Preparing to unpack .../026-libgomp1-i386-cross_13.2.0-7cross2_all.deb ... Unpacking libgomp1-i386-cross (13.2.0-7cross2) ... Selecting previously unselected package libitm1-i386-cross. Preparing to unpack .../027-libitm1-i386-cross_13.2.0-7cross2_all.deb ... Unpacking libitm1-i386-cross (13.2.0-7cross2) ... Selecting previously unselected package libatomic1-i386-cross. Preparing to unpack .../028-libatomic1-i386-cross_13.2.0-7cross2_all.deb ... Unpacking libatomic1-i386-cross (13.2.0-7cross2) ... Selecting previously unselected package libasan8-i386-cross. 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Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../068-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../069-debhelper_13.11.9_all.deb ... Unpacking debhelper (13.11.9) ... Selecting previously unselected package xml-core. Preparing to unpack .../070-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package sgml-data. Preparing to unpack .../071-sgml-data_2.0.11+nmu1_all.deb ... Unpacking sgml-data (2.0.11+nmu1) ... Selecting previously unselected package docbook. Preparing to unpack .../072-docbook_4.5-10_all.deb ... Unpacking docbook (4.5-10) ... Selecting previously unselected package libosp5. Preparing to unpack .../073-libosp5_1.5.2-14_arm64.deb ... Unpacking libosp5 (1.5.2-14) ... Selecting previously unselected package opensp. 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Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up libfakeroot:arm64 (1.32.2-1+b1) ... Setting up libosp5 (1.5.2-14) ... Setting up fakeroot (1.32.2-1+b1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up linux-libc-dev-i386-cross (6.5.8-1cross1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:i386 (13.2.0-9) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:arm64 (0.0.8-1) ... Setting up libc6-i386-cross (2.37-12cross1) ... Setting up libsub-override-perl (0.10-1) ... Setting up sgml-base (1.31) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up gcc-13-i686-linux-gnu-base:arm64 (13.2.0-7cross2) ... Setting up cpp-13-i686-linux-gnu (13.2.0-7cross2) ... Setting up libquadmath0-i386-cross (13.2.0-7cross2) ... Setting up libelf1:arm64 (0.190-1+b1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up libtool (2.4.7-7) ... Setting up libatomic1-i386-cross (13.2.0-7cross2) ... Setting up libgomp1-i386-cross (13.2.0-7cross2) ... Setting up libc6-dev-i386-cross (2.37-12cross1) ... Setting up opensp (1.5.2-14) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (13.2.0-7cross2) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (13.2.0-7cross2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up xml-core (0.19) ... Setting up cpp-i686-linux-gnu (4:13.2.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (13.2.0-7cross2) ... Setting up libstdc++6-i386-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.11.9) ... Setting up libubsan1-i386-cross (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libgcc-13-dev-i386-cross (13.2.0-7cross2) ... Setting up gcc-13-i686-linux-gnu (13.2.0-7cross2) ... Setting up libstdc++-13-dev-i386-cross (13.2.0-7cross2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up gcc-i686-linux-gnu (4:13.2.0-2) ... Setting up g++-13-i686-linux-gnu (13.2.0-7cross2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up g++-i686-linux-gnu (4:13.2.0-2) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-i386 (12.10) ... Setting up libgcc-s1:i386 (13.2.0-9) ... Setting up libc6:i386 (2.37-13) ... Setting up libasan8:i386 (13.2.0-9) ... Setting up libstdc++6:i386 (13.2.0-9) ... Setting up libitm1:i386 (13.2.0-9) ... Setting up libexpat1:i386 (2.5.0-2+b2) ... Setting up libkeyutils1:i386 (1.6.3-2+b2) ... Setting up libsqlite3-0:i386 (3.44.2-1) ... Setting up libssl3:i386 (3.1.4-2) ... Setting up zlib1g:i386 (1:1.3.dfsg-3) ... Setting up libcrypt1:i386 (1:4.4.36-4) ... Setting up libcom-err2:i386 (1.47.0-2+b1) ... Setting up libgomp1:i386 (13.2.0-9) ... Setting up libkrb5support0:i386 (1.20.1-5) ... Setting up libquadmath0:i386 (13.2.0-9) ... Setting up libatomic1:i386 (13.2.0-9) ... Setting up libk5crypto3:i386 (1.20.1-5) ... Setting up libubsan1:i386 (13.2.0-9) ... Setting up libgcc-13-dev:i386 (13.2.0-9) ... Setting up libcrypt-dev:i386 (1:4.4.36-4) ... Setting up libkrb5-3:i386 (1.20.1-5) ... Setting up libmstoolkit82:i386 (82-7) ... Setting up libgssapi-krb5-2:i386 (1.20.1-5) ... Setting up libtirpc3:i386 (1.3.4+ds-1) ... Setting up libtirpc-dev:i386 (1.3.4+ds-1) ... Setting up libnsl2:i386 (1.3.0-3) ... Setting up libnsl-dev:i386 (1.3.0-3) ... Setting up libc6-dev:i386 (2.37-13) ... Setting up libstdc++-13-dev:i386 (13.2.0-9) ... Setting up libexpat1-dev:i386 (2.5.0-2+b2) ... Setting up libsqlite3-dev:i386 (3.44.2-1) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3) ... Setting up libmstoolkit-dev:i386 (82-7) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for sgml-base (1.31) ... Setting up sgml-data (2.0.11+nmu1) ... Processing triggers for sgml-base (1.31) ... Setting up docbook (4.5-10) ... Processing triggers for sgml-base (1.31) ... Setting up docbook-to-man (1:2.0.0-45) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.41.50.20231227-1 dpkg-dev_1.22.2 g++-13_13.2.0-9 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-i386-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-i386-cross_13.2.0-7cross2 linux-libc-dev_6.6.9-1 Package versions: apt_2.7.8 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.50.20231227-1 binutils-aarch64-linux-gnu_2.41.50.20231227-1 binutils-common_2.41.50.20231227-1 binutils-i686-linux-gnu_2.41.50.20231227-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3 cpp_4:13.2.0-2 cpp-13_13.2.0-9 cpp-13-i686-linux-gnu_13.2.0-7cross2 cpp-i686-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-i386_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 docbook_4.5-10 docbook-to-man_1:2.0.0-45 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 fakeroot_1.32.2-1+b1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-2 g++-13_13.2.0-9 g++-13-i686-linux-gnu_13.2.0-7cross2 g++-i686-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-13_13.2.0-9 gcc-13-base_13.2.0-9 gcc-13-cross-base_13.2.0-7cross2 gcc-13-i686-linux-gnu_13.2.0-7cross2 gcc-13-i686-linux-gnu-base_13.2.0-7cross2 gcc-i686-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-4 libapt-pkg6.0_2.7.8 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9 libasan8-i386-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-i386-cross_13.2.0-7cross2 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231227-1 libblkid1_2.39.3-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-dev_2.37-13 libc6-dev-i386-cross_2.37-12cross1 libc6-i386-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41.50.20231227-1 libctf0_2.41.50.20231227-1 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.2 libelf1_0.190-1+b1 libexpat1_2.5.0-2+b2 libexpat1-dev_2.5.0-2+b2 libfakeroot_1.32.2-1+b1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-9 libgcc-13-dev-i386-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-i386-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-i386-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231227-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-9 libicu72_72.1-4 libidn2-0_2.3.4-1+b2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_13.2.0-9 libitm1-i386-cross_13.2.0-7cross2 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2+b2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblocale-gettext-perl_1.07-6+b1 liblsan0_13.2.0-9 liblz4-1_1.9.4-1+b2 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libmstoolkit-dev_82-7 libmstoolkit82_82-7 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libosp5_1.5.2-14 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-10+b1 libperl5.38_5.38.2-2 libpipeline1_1.5.7-1+b2 libquadmath0_13.2.0-9 libquadmath0-i386-cross_13.2.0-7cross2 libseccomp2_2.5.5-1 libselinux1_3.5-1+b2 libsframe1_2.41.50.20231227-1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libsqlite3-dev_3.44.2-1 libssl3_3.1.4-2 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-i386-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-i386-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.2-4 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-9 libubsan1_13.2.0-9 libubsan1-i386-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255.2-4 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.9-1 linux-libc-dev-i386-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 opensp_1.5.2-14 patch_2.7.6-7 perl_5.38.2-2 perl-base_5.38.2-2 perl-modules-5.36_5.36.0-10 perl-modules-5.38_5.38.2-2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sgml-base_1.31 sgml-data_2.0.11+nmu1 sysvinit-utils_3.08-5 tar_1.35+dfsg-2 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-6 xml-core_0.19 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: comet-ms Binary: comet-ms Architecture: any Version: 2019015+cleaned1-4 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: http://comet-ms.sourceforge.net Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/comet-ms Vcs-Git: https://salsa.debian.org/debichem-team/comet-ms.git Build-Depends: debhelper-compat (= 13), dpkg-dev (>= 1.16.1.1), libmstoolkit-dev (>= 82), libmstoolkit-dev (<< 83), docbook-to-man Package-List: comet-ms deb science optional arch=any Checksums-Sha1: e8ce6f80224671a82f5c9123546c621fba5df7d0 1378100 comet-ms_2019015+cleaned1.orig.tar.gz 77b403dcdf0c4aea8d35d22a0f2fb2a1b68e35e7 6700 comet-ms_2019015+cleaned1-4.debian.tar.xz Checksums-Sha256: 27a5c4b89b82d4570485cca98b27a45dd55a640ea297d8188c1c008a6b5234a3 1378100 comet-ms_2019015+cleaned1.orig.tar.gz 78cd62c3b098393d7a12b906c0310f9e780e1fd249b31878775611a89c36b321 6700 comet-ms_2019015+cleaned1-4.debian.tar.xz Files: fac4a9263c2b124cb0183dc9bf645f4b 1378100 comet-ms_2019015+cleaned1.orig.tar.gz 2e1880a1ddc2c5d3d8f2b52c5ea928d9 6700 comet-ms_2019015+cleaned1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmVgsqoACgkQQatITXaU z0JgtRAApEEXyxnNwsn7bBETIUJLvcB857oohitgswyoSUAT4bopSAIAqSM1QcA/ aASBUHUoLKGLGXQWOb4pNC0rwkk1//JyZWnMwoczsyWpKFUQ7NKMGiy3Uidtiana IubcDKFxzj/f6VGqNFAuWvvEJDnuGc2H47qD35ActxHyX1lSL8Qrv+/KmQK64C3K K9GJYxlbWgFzFC1cW3CxE4SLltSfB8kowNsGokK9SNIInLA9Kiz5FiRuN1vjoFP0 NbX6GVd0Z5Ak0gYBQ3XS20QeaqJFFVvH/j+YY8WMHvFDjN8I2Zkqhx/vWy8Fg248 3eLBCU6IBbW20NCHmol6Ak5aH4NhgWn4RT6UzaHllvjicG+LsMP7M99NODjpWWGN FH3XKzzPI4If1T/DpY2ij/L3D6OoWtpCAgme/hWI/2eJToQTmGydzSuoDs2BGCRf 3IwXlkOsoRpXsEKSmN6mHdRg7TBhijtCrVml8MKt5KdPM9geLLsuQUSCMnIZ9gv0 sjYXrjhl8qL5tGzztg6s8gUEB9qzU51xGcaknFAWgegB65MyWYg9PxDUL0r8X55u pxaZ3uBIUjju+a2IcOLauHBy83qs2GF3ZgkhnoaPWC5Nj6SHzd+1UQ5Zyb5ofC7y EgRFTxJQf3F5JT4MsNJzEywwTnfwPiA1c8lh2tphQ276gFxwzjU= =b9hN -----END PGP SIGNATURE----- gpgv: Signature made Fri Nov 24 14:26:50 2023 UTC gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./comet-ms_2019015+cleaned1-4.dsc: no acceptable signature found dpkg-source: info: extracting comet-ms in /<> dpkg-source: info: unpacking comet-ms_2019015+cleaned1.orig.tar.gz dpkg-source: info: unpacking comet-ms_2019015+cleaned1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile-to-handle-lib-debian-way-of-doing-things.patch dpkg-source: info: applying cometsearch-makefile-to-handle-lib-debian-way-of-doing-things.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package comet-ms dpkg-buildpackage: info: source version 2019015+cleaned1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f debian/comet-ms.1 make clean make[2]: Entering directory '/<>' rm -f *.o comet-ms cd CometSearch ; make clean make[3]: Entering directory '/<>/CometSearch' rm -f *.o libcometsearch.a make[3]: Leaving directory '/<>/CometSearch' make[2]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/comet-ms.substvars debian/files rm -fr -- debian/comet-ms/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/comet-ms.substvars debian/files rm -fr -- debian/comet-ms/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' docbook-to-man debian/comet-ms.sgml > debian/comet-ms.1 dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=i686-linux-gnu-pkg-config CXX=i686-linux-gnu-g\+\+ CC=i686-linux-gnu-gcc make[2]: Entering directory '/<>' cd CometSearch ; make make[3]: Entering directory '/<>/CometSearch' i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit Threading.cpp -c i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometInterfaces.cpp -c i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometSearch.cpp -c CometSearch.cpp: In static member function ‘static bool CometSearch::RunSearch(int, int, int, int)’: CometSearch.cpp:369:77: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘comet_fileoffset_t’ {aka ‘long long int’} [-Wformat=] 369 | sprintf(szErrorMsg, " Error realloc(szMods[%ld])\n", iLenAllocMods); | ~~^ ~~~~~~~~~~~~~ | | | | | comet_fileoffset_t {aka long long int} | long int | %lld CometSearch.cpp:515:77: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘comet_fileoffset_t’ {aka ‘long long int’} [-Wformat=] 515 | sprintf(szErrorMsg, " Error realloc(szMods[%ld])\n", iLenAllocMods); | ~~^ ~~~~~~~~~~~~~ | | | | | comet_fileoffset_t {aka long long int} | long int | %lld CometSearch.cpp: In member function ‘bool CometSearch::IndexSearch()’: CometSearch.cpp:1174:95: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1174 | sprintf(szErr, " Error reading .idx database: min mass %d, max mass %d, num peptides %zu\n", iMinMass, iMaxMass, tNumPeptides); | ~~^ ~~~~~~~~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu In file included from CometSearch.cpp:19: ThreadPool.h: In instantiation of ‘ThreadManager::ThreadManager(ThreadPool*) [with T = SearchThreadData*]’: ThreadPool.h:69:10: required from ‘ThreadPool::ThreadPool(ThreadProc, int, int, int) [with T = SearchThreadData*; ThreadProc = void (*)(SearchThreadData*)]’ CometSearch.cpp:138:66: required from here ThreadPool.h:257:13: warning: cast between incompatible function types from ‘uint32_t (*)(void*)’ {aka ‘unsigned int (*)(void*)’} to ‘ThreadProc’ {aka ‘void* (*)(void*)’} [-Wcast-function-type] 257 | reinterpret_cast(ThreadManager::ThreadRoutingFunction), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp: In static member function ‘static bool CometSearch::RunSearch(int, int, int, int)’: CometSearch.cpp:312:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 312 | fgets(szPeffLine, iLenSzLine, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:329:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fgets(szPeffLine+(int)strlen(szPeffLine), iLenSzLine - (int)strlen(szPeffLine), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:673:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 673 | fgets(szBuf, sizeof(szBuf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp: In member function ‘void CometSearch::ReadOBO(char*, std::vector*)’: CometSearch.cpp:725:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 725 | fgets(szLineOBO, SIZE_BUF, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:777:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 777 | fgets(szLineOBO, SIZE_BUF, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp: In member function ‘bool CometSearch::IndexSearch()’: CometSearch.cpp:1159:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1159 | fread(&lEndOfStruct, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1166:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1166 | fread(&iMinMass, sizeof(int), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1167:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1167 | fread(&iMaxMass, sizeof(int), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1168:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1168 | fread(&tNumPeptides, sizeof(uint64_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1185:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1185 | fread(lReadIndex, sizeof(comet_fileoffset_t), iMaxPeptideMass10, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1224:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1224 | fread(&sDBI, sizeof(struct DBIndex), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1229:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1229 | fread(&lSize, sizeof(long), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1233:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1233 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1266:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1266 | fread(&sDBI, sizeof(struct DBIndex), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1269:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1269 | fread(&lSize, sizeof(long), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1273:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1273 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1311:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1311 | fread(&lSize, sizeof(long), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1316:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1316 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch.cpp:1323:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1323 | fread(szTmp, sizeof(char)*WIDTH_REFERENCE, 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometPreprocess.cpp -c In file included from CometPreprocess.h:21, from CometPreprocess.cpp:19: ThreadPool.h: In instantiation of ‘ThreadManager::ThreadManager(ThreadPool*) [with T = PreprocessThreadData*]’: ThreadPool.h:69:10: required from ‘ThreadPool::ThreadPool(ThreadProc, int, int, int) [with T = PreprocessThreadData*; ThreadProc = void (*)(PreprocessThreadData*)]’ CometPreprocess.cpp:74:65: required from here ThreadPool.h:257:13: warning: cast between incompatible function types from ‘uint32_t (*)(void*)’ {aka ‘unsigned int (*)(void*)’} to ‘ThreadProc’ {aka ‘void* (*)(void*)’} [-Wcast-function-type] 257 | reinterpret_cast(ThreadManager::ThreadRoutingFunction), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometPostAnalysis.cpp -c In file included from CometPostAnalysis.cpp:19: ThreadPool.h: In instantiation of ‘ThreadManager::ThreadManager(ThreadPool*) [with T = PostAnalysisThreadData*]’: ThreadPool.h:69:10: required from ‘ThreadPool::ThreadPool(ThreadProc, int, int, int) [with T = PostAnalysisThreadData*; ThreadProc = void (*)(PostAnalysisThreadData*)]’ CometPostAnalysis.cpp:46:38: required from here ThreadPool.h:257:13: warning: cast between incompatible function types from ‘uint32_t (*)(void*)’ {aka ‘unsigned int (*)(void*)’} to ‘ThreadProc’ {aka ‘void* (*)(void*)’} [-Wcast-function-type] 257 | reinterpret_cast(ThreadManager::ThreadRoutingFunction), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometMassSpecUtils.cpp -c CometMassSpecUtils.cpp: In static member function ‘static void CometMassSpecUtils::GetProteinName(FILE*, comet_fileoffset_t, char*)’: CometMassSpecUtils.cpp:136:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | fread(&lSize, sizeof(long), 1, fpdb); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometMassSpecUtils.cpp:141:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fpdb); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometMassSpecUtils.cpp:148:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 148 | fread(szTmp, sizeof(char)*WIDTH_REFERENCE, 1, fpdb); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometMassSpecUtils.cpp:155:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fscanf(fpdb, "%99s", szProteinName); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometWriteOut.cpp -c CometWriteOut.cpp: In static member function ‘static void CometWriteOut::PrintOutputLine(int, int, int, int, bool, Results*, FILE*, FILE*)’: CometWriteOut.cpp:489:25: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 489 | sprintf(szTemp, "+%d", iNumTotProteins); | ^~ CometWriteOut.cpp:489:23: note: directive argument in the range [-134217728, 268435454] 489 | sprintf(szTemp, "+%d", iNumTotProteins); | ^~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:906, from /usr/i686-linux-gnu/include/c++/13/cstdio:42, from /usr/i686-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/i686-linux-gnu/include/c++/13/bits/basic_string.h:4109, from /usr/i686-linux-gnu/include/c++/13/string:54, from Common.h:21, from CometWriteOut.cpp:17: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static void CometWriteOut::PrintOutputLine(int, int, int, int, bool, Results*, FILE*, FILE*)’ at CometWriteOut.cpp:489:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometWriteOut.cpp:124:32: warning: ‘%.5d’ directive writing between 5 and 11 bytes into a region of size between 0 and 1022 [-Wformat-overflow=] 124 | sprintf(szOutput, "%s/%s.%.5d.%.5d.%d.out", | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometWriteOut.cpp:124:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 20 and 1064 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometWriteOut.cpp:115:35: warning: ‘%s’ directive writing up to 511 bytes into a region of size between 506 and 1017 [-Wformat-overflow=] 115 | sprintf(szOutput, "%s_decoy/%s.%.5d.%.5d.%d.out", | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometWriteOut.cpp:115:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 26 and 1070 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometWriteOut.cpp:273:28: warning: ‘%+d’ directive writing between 2 and 11 bytes into a region of size 9 [-Wformat-overflow=] 273 | sprintf(szTempStr, " %+d", iLenMaxDuplicates); | ^~~ CometWriteOut.cpp:273:26: note: directive argument in the range [1, 2147483647] 273 | sprintf(szTempStr, " %+d", iLenMaxDuplicates); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometWriteOut.cpp:273:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometWriteOut.cpp:151:59: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 226 [-Wformat-overflow=] 151 | sprintf(szErrorMsg, " Error - cannot write to file %s.\n", szOutput); | ^~ ~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometWriteOut.cpp:151:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 33 and 1056 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometWriteSqt.cpp -c i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometWritePepXML.cpp -c CometWritePepXML.cpp: In static member function ‘static bool CometWritePepXML::WritePepXMLHeader(FILE*, CometSearchManager&)’: CometWritePepXML.cpp:100:12: warning: ignoring return value of ‘char* realpath(const char*, char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | realpath(g_staticParams.inputFile.szBaseName, resolvedPathBaseName); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometWritePepXML.cpp:101:12: warning: ignoring return value of ‘char* realpath(const char*, char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | realpath(szRunSummaryBaseName, szRunSummaryResolvedPath); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometWritePercolator.cpp -c i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometWriteTxt.cpp -c i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometSearchManager.cpp -c CometSearchManager.cpp: In static member function ‘static bool CometSearchManager::WriteIndexedDatabase()’: CometSearchManager.cpp:2756:28: warning: ‘.idx’ directive writing 4 bytes into a region of size between 1 and 512 [-Wformat-overflow=] 2756 | sprintf(szIndexFile, "%s.idx", g_staticParams.databaseInfo.szDatabase); | ^~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:906, from /usr/i686-linux-gnu/include/c++/13/cstdio:42, from /usr/i686-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/i686-linux-gnu/include/c++/13/bits/basic_string.h:4109, from /usr/i686-linux-gnu/include/c++/13/string:54, from Common.h:21, from CometSearchManager.cpp:17: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometSearchManager::WriteIndexedDatabase()’ at CometSearchManager.cpp:2756:11: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 516 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:416:34: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 416 | sprintf(szIsotope, "ISOTOPE%d", g_staticParams.tolerances.iIsotopeError); | ^~ In function ‘void PrintOutfileHeader()’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1559:25: CometSearchManager.cpp:416:26: note: directive argument in the range [1, 2147483647] 416 | sprintf(szIsotope, "ISOTOPE%d", g_staticParams.tolerances.iIsotopeError); | ^~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void PrintOutfileHeader()’ at CometSearchManager.cpp:416:14, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1559:25: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 18 bytes into a destination of size 16 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1597:71: warning: ‘%s’ directive writing up to 511 bytes into a region of size 218 [-Wformat-overflow=] 1597 | sprintf(szErrorMsg, " Error - cannot read DIA window file \"%s\".\n", g_staticParams.szDIAWindowsFile); | ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1597:17: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 42 and 553 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:223:73: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 223 | sprintf(szErrorMsg, " Error - could not create directory \"%s\".\n", szDecoyDir); | ^~ ~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘bool UpdateInputFile(InputFileInfo*)’ at CometSearchManager.cpp:223:20, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1606:35: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1700:76: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 219 [-Wformat-overflow=] 1700 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoySQT); | ^~ ~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1700:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1675:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1675 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputSQT); | ^~ ~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1675:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1763:76: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 219 [-Wformat-overflow=] 1763 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyTxt); | ^~ ~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1763:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1737:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1737 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputTxt); | ^~ ~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1737:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1826:76: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 219 [-Wformat-overflow=] 1826 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyPepXML); | ^~ ~~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1826:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1800:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1800 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPepXML); | ^~ ~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1800:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1854:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1854 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPercolator); | ^~ ~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1854:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:1975:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 128 [-Wformat-overflow=] 1975 | sprintf(szOut, "%s", szStatusMsg); | ^~ ~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:1975:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 256 bytes into a destination of size 128 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearchManager.cpp:364:66: warning: ‘%s’ directive writing up to 511 bytes into a region of size 508 [-Wformat-overflow=] 364 | sprintf(szOutFileTimeString+strlen(szOutFileTimeString), " on %s", g_staticParams.szHostName); | ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void CalcRunTime(time_t)’ at CometSearchManager.cpp:364:11, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearchManager.cpp:2111:24: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 516 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -O3 -fpermissive -Wall -Wextra -Wno-write-strings -std=c++11 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I. -I/usr/include/libmstoolkit CometCheckForUpdates.cpp -c CometCheckForUpdates.cpp: In static member function ‘static void CometCheckForUpdates::SendAnalyticsHit()’: CometCheckForUpdates.cpp:161:11: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size between 895 and 898 [-Wformat-truncation=] 161 | "%s\r\n", host, (int)strlen(postData), postData); | ^~ ~~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:906, from /usr/i686-linux-gnu/include/c++/13/cstdio:42, from /usr/i686-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/i686-linux-gnu/include/c++/13/bits/basic_string.h:4109, from /usr/i686-linux-gnu/include/c++/13/string:54, from Common.h:21, from CometCheckForUpdates.h:20, from CometCheckForUpdates.cpp:17: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static void CometCheckForUpdates::SendAnalyticsHit()’ at CometCheckForUpdates.cpp:156:12: /usr/i686-linux-gnu/include/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 129 and 1155 bytes into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ar rcs libcometsearch.a Threading.o CometInterfaces.o CometSearch.o CometPreprocess.o CometPostAnalysis.o CometMassSpecUtils.o CometWriteOut.o CometWriteSqt.o CometWritePepXML.o CometWritePercolator.o CometWriteTxt.o CometSearchManager.o CometCheckForUpdates.o make[3]: Leaving directory '/<>/CometSearch' i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch CometSearch/CometCheckForUpdates.cpp CometSearch/CometMassSpecUtils.cpp CometSearch/CometPreprocess.cpp CometSearch/CometSearchManager.cpp CometSearch/CometWritePepXML.cpp CometSearch/CometWriteSqt.cpp CometSearch/Threading.cpp CometSearch/CometInterfaces.cpp CometSearch/CometPostAnalysis.cpp CometSearch/CometSearch.cpp CometSearch/CometWriteOut.cpp CometSearch/CometWritePercolator.cpp CometSearch/CometWriteTxt.cpp Comet.cpp -c CometSearch/CometCheckForUpdates.cpp: In static member function ‘static void CometCheckForUpdates::SendAnalyticsHit()’: CometSearch/CometCheckForUpdates.cpp:146:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 146 | char *host = "www.google-analytics.com"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometCheckForUpdates.cpp:161:11: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size between 895 and 898 [-Wformat-truncation=] 161 | "%s\r\n", host, (int)strlen(postData), postData); | ^~ ~~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:906, from /usr/i686-linux-gnu/include/c++/13/cstdio:42, from /usr/i686-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/i686-linux-gnu/include/c++/13/bits/basic_string.h:4109, from /usr/i686-linux-gnu/include/c++/13/string:54, from CometSearch/Common.h:21, from CometSearch/CometCheckForUpdates.h:20, from CometSearch/CometCheckForUpdates.cpp:17: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘static void CometCheckForUpdates::SendAnalyticsHit()’ at CometSearch/CometCheckForUpdates.cpp:156:12: /usr/i686-linux-gnu/include/bits/stdio2.h:54:35: note: ‘__builtin___snprintf_chk’ output between 129 and 1155 bytes into a destination of size 1024 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometMassSpecUtils.cpp: In static member function ‘static void CometMassSpecUtils::GetProteinName(FILE*, comet_fileoffset_t, char*)’: CometSearch/CometMassSpecUtils.cpp:136:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | fread(&lSize, sizeof(long), 1, fpdb); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometMassSpecUtils.cpp:141:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fpdb); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometMassSpecUtils.cpp:148:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 148 | fread(szTmp, sizeof(char)*WIDTH_REFERENCE, 1, fpdb); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometMassSpecUtils.cpp:155:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fscanf(fpdb, "%99s", szProteinName); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from CometSearch/CometPreprocess.h:21, from CometSearch/CometPreprocess.cpp:19: CometSearch/ThreadPool.h: In instantiation of ‘ThreadManager::ThreadManager(ThreadPool*) [with T = PreprocessThreadData*]’: CometSearch/ThreadPool.h:69:10: required from ‘ThreadPool::ThreadPool(ThreadProc, int, int, int) [with T = PreprocessThreadData*; ThreadProc = void (*)(PreprocessThreadData*)]’ CometSearch/CometPreprocess.cpp:74:65: required from here CometSearch/ThreadPool.h:257:13: warning: cast between incompatible function types from ‘uint32_t (*)(void*)’ {aka ‘unsigned int (*)(void*)’} to ‘ThreadProc’ {aka ‘void* (*)(void*)’} [-Wcast-function-type] 257 | reinterpret_cast(ThreadManager::ThreadRoutingFunction), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In static member function ‘static bool CometSearchManager::WriteIndexedDatabase()’: CometSearch/CometSearchManager.cpp:2756:28: warning: ‘.idx’ directive writing 4 bytes into a region of size between 1 and 512 [-Wformat-overflow=] 2756 | sprintf(szIndexFile, "%s.idx", g_staticParams.databaseInfo.szDatabase); | ^~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:906, from /usr/i686-linux-gnu/include/c++/13/cstdio:42, from /usr/i686-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/i686-linux-gnu/include/c++/13/bits/basic_string.h:4109, from /usr/i686-linux-gnu/include/c++/13/string:54, from CometSearch/Common.h:21, from CometSearch/CometSearchManager.cpp:17: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometSearchManager::WriteIndexedDatabase()’ at CometSearch/CometSearchManager.cpp:2756:11: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 516 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:416:34: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 416 | sprintf(szIsotope, "ISOTOPE%d", g_staticParams.tolerances.iIsotopeError); | ^~ In function ‘void PrintOutfileHeader()’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1559:25: CometSearch/CometSearchManager.cpp:416:26: note: directive argument in the range [1, 2147483647] 416 | sprintf(szIsotope, "ISOTOPE%d", g_staticParams.tolerances.iIsotopeError); | ^~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void PrintOutfileHeader()’ at CometSearch/CometSearchManager.cpp:416:14, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1559:25: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 18 bytes into a destination of size 16 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1597:71: warning: ‘%s’ directive writing up to 511 bytes into a region of size 218 [-Wformat-overflow=] 1597 | sprintf(szErrorMsg, " Error - cannot read DIA window file \"%s\".\n", g_staticParams.szDIAWindowsFile); | ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1597:17: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 42 and 553 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:223:73: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 223 | sprintf(szErrorMsg, " Error - could not create directory \"%s\".\n", szDecoyDir); | ^~ ~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘bool UpdateInputFile(InputFileInfo*)’ at CometSearch/CometSearchManager.cpp:223:20, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1606:35: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1700:76: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 219 [-Wformat-overflow=] 1700 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoySQT); | ^~ ~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1700:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1675:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1675 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputSQT); | ^~ ~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1675:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1763:76: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 219 [-Wformat-overflow=] 1763 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyTxt); | ^~ ~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1763:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1737:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1737 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputTxt); | ^~ ~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1737:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1826:76: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 219 [-Wformat-overflow=] 1826 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyPepXML); | ^~ ~~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1826:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 41 and 1064 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1800:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1800 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPepXML); | ^~ ~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1800:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1854:67: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 225 [-Wformat-overflow=] 1854 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPercolator); | ^~ ~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1854:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 1058 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:1975:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 128 [-Wformat-overflow=] 1975 | sprintf(szOut, "%s", szStatusMsg); | ^~ ~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:1975:23: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 256 bytes into a destination of size 128 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometSearchManager.cpp: In member function ‘virtual bool CometSearchManager::DoSearch()’: CometSearch/CometSearchManager.cpp:364:66: warning: ‘%s’ directive writing up to 511 bytes into a region of size 508 [-Wformat-overflow=] 364 | sprintf(szOutFileTimeString+strlen(szOutFileTimeString), " on %s", g_staticParams.szHostName); | ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void CalcRunTime(time_t)’ at CometSearch/CometSearchManager.cpp:364:11, inlined from ‘virtual bool CometSearchManager::DoSearch()’ at CometSearch/CometSearchManager.cpp:2111:24: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 516 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometWritePepXML.cpp: In static member function ‘static void CometWritePepXML::ReadInstrument(char*, char*)’: CometSearch/CometWritePepXML.cpp:910:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 910 | GetVal(szMsInstrumentElement, "\"msModel\" value", szModel); | ^~~~~~~~~~~~~~~~~~~ CometSearch/CometWritePepXML.cpp:911:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 911 | GetVal(szMsInstrumentElement, "\"msManufacturer\" value", szManufacturer); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometWritePepXML.cpp: In static member function ‘static bool CometWritePepXML::WritePepXMLHeader(FILE*, CometSearchManager&)’: CometSearch/CometWritePepXML.cpp:100:12: warning: ignoring return value of ‘char* realpath(const char*, char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | realpath(g_staticParams.inputFile.szBaseName, resolvedPathBaseName); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometWritePepXML.cpp:101:12: warning: ignoring return value of ‘char* realpath(const char*, char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | realpath(szRunSummaryBaseName, szRunSummaryResolvedPath); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from CometSearch/CometPostAnalysis.cpp:19: CometSearch/ThreadPool.h: In instantiation of ‘ThreadManager::ThreadManager(ThreadPool*) [with T = PostAnalysisThreadData*]’: CometSearch/ThreadPool.h:69:10: required from ‘ThreadPool::ThreadPool(ThreadProc, int, int, int) [with T = PostAnalysisThreadData*; ThreadProc = void (*)(PostAnalysisThreadData*)]’ CometSearch/CometPostAnalysis.cpp:46:38: required from here CometSearch/ThreadPool.h:257:13: warning: cast between incompatible function types from ‘uint32_t (*)(void*)’ {aka ‘unsigned int (*)(void*)’} to ‘ThreadProc’ {aka ‘void* (*)(void*)’} [-Wcast-function-type] 257 | reinterpret_cast(ThreadManager::ThreadRoutingFunction), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp: In static member function ‘static bool CometSearch::RunSearch(int, int, int, int)’: CometSearch/CometSearch.cpp:369:77: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘comet_fileoffset_t’ {aka ‘long long int’} [-Wformat=] 369 | sprintf(szErrorMsg, " Error realloc(szMods[%ld])\n", iLenAllocMods); | ~~^ ~~~~~~~~~~~~~ | | | | | comet_fileoffset_t {aka long long int} | long int | %lld CometSearch/CometSearch.cpp:515:77: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘comet_fileoffset_t’ {aka ‘long long int’} [-Wformat=] 515 | sprintf(szErrorMsg, " Error realloc(szMods[%ld])\n", iLenAllocMods); | ~~^ ~~~~~~~~~~~~~ | | | | | comet_fileoffset_t {aka long long int} | long int | %lld CometSearch/CometSearch.cpp: In member function ‘bool CometSearch::IndexSearch()’: CometSearch/CometSearch.cpp:1174:95: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1174 | sprintf(szErr, " Error reading .idx database: min mass %d, max mass %d, num peptides %zu\n", iMinMass, iMaxMass, tNumPeptides); | ~~^ ~~~~~~~~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu CometSearch/CometSearch.cpp: In member function ‘int CometSearch::twiddle(int*, int*, int*, int*)’: CometSearch/CometSearch.cpp:4973:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 4973 | register int i, j, k; | ^ CometSearch/CometSearch.cpp:4973:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 4973 | register int i, j, k; | ^ CometSearch/CometSearch.cpp:4973:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 4973 | register int i, j, k; | ^ In file included from CometSearch/CometSearch.cpp:19: CometSearch/ThreadPool.h: In instantiation of ‘ThreadManager::ThreadManager(ThreadPool*) [with T = SearchThreadData*]’: CometSearch/ThreadPool.h:69:10: required from ‘ThreadPool::ThreadPool(ThreadProc, int, int, int) [with T = SearchThreadData*; ThreadProc = void (*)(SearchThreadData*)]’ CometSearch/CometSearch.cpp:138:66: required from here CometSearch/ThreadPool.h:257:13: warning: cast between incompatible function types from ‘uint32_t (*)(void*)’ {aka ‘unsigned int (*)(void*)’} to ‘ThreadProc’ {aka ‘void* (*)(void*)’} [-Wcast-function-type] 257 | reinterpret_cast(ThreadManager::ThreadRoutingFunction), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp: In static member function ‘static bool CometSearch::RunSearch(int, int, int, int)’: CometSearch/CometSearch.cpp:312:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 312 | fgets(szPeffLine, iLenSzLine, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:329:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fgets(szPeffLine+(int)strlen(szPeffLine), iLenSzLine - (int)strlen(szPeffLine), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:673:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 673 | fgets(szBuf, sizeof(szBuf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp: In member function ‘void CometSearch::ReadOBO(char*, std::vector*)’: CometSearch/CometSearch.cpp:725:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 725 | fgets(szLineOBO, SIZE_BUF, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:777:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 777 | fgets(szLineOBO, SIZE_BUF, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp: In member function ‘bool CometSearch::IndexSearch()’: CometSearch/CometSearch.cpp:1159:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1159 | fread(&lEndOfStruct, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1166:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1166 | fread(&iMinMass, sizeof(int), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1167:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1167 | fread(&iMaxMass, sizeof(int), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1168:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1168 | fread(&tNumPeptides, sizeof(uint64_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1185:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1185 | fread(lReadIndex, sizeof(comet_fileoffset_t), iMaxPeptideMass10, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1224:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1224 | fread(&sDBI, sizeof(struct DBIndex), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1229:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1229 | fread(&lSize, sizeof(long), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1233:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1233 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1266:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1266 | fread(&sDBI, sizeof(struct DBIndex), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1269:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1269 | fread(&lSize, sizeof(long), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1273:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1273 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1311:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1311 | fread(&lSize, sizeof(long), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1316:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1316 | fread(&tmpoffset, sizeof(comet_fileoffset_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometSearch.cpp:1323:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1323 | fread(szTmp, sizeof(char)*WIDTH_REFERENCE, 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearch/CometWriteOut.cpp: In static member function ‘static void CometWriteOut::PrintOutputLine(int, int, int, int, bool, Results*, FILE*, FILE*)’: CometSearch/CometWriteOut.cpp:489:25: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 489 | sprintf(szTemp, "+%d", iNumTotProteins); | ^~ CometSearch/CometWriteOut.cpp:489:23: note: directive argument in the range [-134217728, 268435454] 489 | sprintf(szTemp, "+%d", iNumTotProteins); | ^~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:906, from /usr/i686-linux-gnu/include/c++/13/cstdio:42, from /usr/i686-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/i686-linux-gnu/include/c++/13/bits/basic_string.h:4109, from /usr/i686-linux-gnu/include/c++/13/string:54, from CometSearch/Common.h:21, from CometSearch/CometWriteOut.cpp:17: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static void CometWriteOut::PrintOutputLine(int, int, int, int, bool, Results*, FILE*, FILE*)’ at CometSearch/CometWriteOut.cpp:489:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometSearch/CometWriteOut.cpp:124:32: warning: ‘%.5d’ directive writing between 5 and 11 bytes into a region of size between 0 and 1022 [-Wformat-overflow=] 124 | sprintf(szOutput, "%s/%s.%.5d.%.5d.%d.out", | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometSearch/CometWriteOut.cpp:124:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 20 and 1064 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometSearch/CometWriteOut.cpp:115:35: warning: ‘%s’ directive writing up to 511 bytes into a region of size between 506 and 1017 [-Wformat-overflow=] 115 | sprintf(szOutput, "%s_decoy/%s.%.5d.%.5d.%d.out", | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometSearch/CometWriteOut.cpp:115:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 26 and 1070 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometSearch/CometWriteOut.cpp:273:28: warning: ‘%+d’ directive writing between 2 and 11 bytes into a region of size 9 [-Wformat-overflow=] 273 | sprintf(szTempStr, " %+d", iLenMaxDuplicates); | ^~~ CometSearch/CometWriteOut.cpp:273:26: note: directive argument in the range [1, 2147483647] 273 | sprintf(szTempStr, " %+d", iLenMaxDuplicates); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometSearch/CometWriteOut.cpp:273:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ CometSearch/CometWriteOut.cpp: In static member function ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’: CometSearch/CometWriteOut.cpp:151:59: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 226 [-Wformat-overflow=] 151 | sprintf(szErrorMsg, " Error - cannot write to file %s.\n", szOutput); | ^~ ~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘static bool CometWriteOut::PrintResults(int, bool, FILE*)’ at CometSearch/CometWriteOut.cpp:151:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 33 and 1056 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Comet.cpp: In function ‘void LoadParameters(char*, CometInterfaces::ICometSearchManager*)’: Comet.cpp:1143:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1143 | fgets(szParamBuf, SIZE_BUF, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ Comet.cpp:1196:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1196 | fgets(szParamBuf, SIZE_BUF, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ Comet.cpp: In function ‘void ProcessCmdLine(int, char**, char*, std::vector&, CometInterfaces::ICometSearchManager*)’: Comet.cpp:1396:75: warning: ‘%s’ directive writing up to 511 bytes into a region of size 235 [-Wformat-overflow=] 1396 | sprintf(szErrorMsg+strlen(szErrorMsg), " Error - input file \"%s\" not found.\n", pInputFileInfo->szFileName); | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:906, from /usr/i686-linux-gnu/include/c++/13/cstdio:42, from /usr/i686-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/i686-linux-gnu/include/c++/13/bits/basic_string.h:4109, from /usr/i686-linux-gnu/include/c++/13/string:54, from CometSearch/Common.h:21, from Comet.cpp:18: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void ProcessCmdLine(int, char**, char*, std::vector&, CometInterfaces::ICometSearchManager*)’ at Comet.cpp:1396:20: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 35 and 546 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cd CometSearch ; make make[3]: Entering directory '/<>/CometSearch' ar rcs libcometsearch.a Threading.o CometInterfaces.o CometSearch.o CometPreprocess.o CometPostAnalysis.o CometMassSpecUtils.o CometWriteOut.o CometWriteSqt.o CometWritePepXML.o CometWritePercolator.o CometWriteTxt.o CometSearchManager.o CometCheckForUpdates.o make[3]: Leaving directory '/<>/CometSearch' i686-linux-gnu-g++ Comet.o CometSearch/CometCheckForUpdates.o CometSearch/CometMassSpecUtils.o CometSearch/CometPreprocess.o CometSearch/CometSearchManager.o CometSearch/CometWritePepXML.o CometSearch/CometWriteSqt.o CometSearch/Threading.o CometSearch/CometInterfaces.o CometSearch/CometPostAnalysis.o CometSearch/CometSearch.o CometSearch/CometWriteOut.o CometSearch/CometWritePercolator.o CometSearch/CometWriteTxt.o -o comet-ms -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -ICometSearch -L/usr/lib -lmstoolkitlite -lm -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/comet-ms.substvars rm -fr -- debian/.debhelper/generated/comet-ms/ debian/comet-ms/ debian/tmp/ dh_installdirs -a install -m0755 -d debian/comet-ms/usr/bin dh_auto_install --destdir=debian/comet-ms/ -a install -m0755 -d /<>/comet-ms-2019015\+cleaned1/debian/comet-ms dh_install -a install -m0755 -d debian/comet-ms/usr/bin cp --reflink=auto -a ./comet-ms debian/comet-ms/usr/bin/ dh_installdocs -a install -m0755 -d debian/comet-ms/usr/share/doc/comet-ms install -p -m0644 debian/copyright debian/comet-ms/usr/share/doc/comet-ms/copyright dh_installchangelogs -a install -m0755 -d debian/comet-ms/usr/share/doc/comet-ms install -p -m0644 debian/.debhelper/generated/comet-ms/dh_installchangelogs.dch.trimmed debian/comet-ms/usr/share/doc/comet-ms/changelog.Debian dh_installman -a install -m0755 -d debian/comet-ms/usr/share/man/man1/ install -p -m0644 ./debian/comet-ms.1 debian/comet-ms/usr/share/man/man1/comet-ms.1 man-recode --to-code UTF-8 --suffix .dh-new debian/comet-ms/usr/share/man/man1/comet-ms.1 mv debian/comet-ms/usr/share/man/man1/comet-ms.1.dh-new debian/comet-ms/usr/share/man/man1/comet-ms.1 chmod 0644 -- debian/comet-ms/usr/share/man/man1/comet-ms.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/comet-ms chmod a-x usr/share/doc/comet-ms/changelog.Debian usr/share/man/man1/comet-ms.1 gzip -9nf usr/share/doc/comet-ms/changelog.Debian usr/share/man/man1/comet-ms.1 cd '/<>' dh_fixperms -a find debian/comet-ms -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/comet-ms ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/comet-ms/usr/share/doc -type f -a -true -a ! -regex 'debian/comet-ms/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/comet-ms/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/comet-ms/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/comet-ms -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/comet-ms/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a dwz -- debian/comet-ms/usr/bin/comet-ms dh_strip -a install -m0755 -d debian/.debhelper/comet-ms/dbgsym-root/usr/lib/debug/.build-id/52 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/comet-ms/usr/bin/comet-ms debian/.debhelper/comet-ms/dbgsym-root/usr/lib/debug/.build-id/52/715e99a73dc703bdc20630aa83bec8c86f50b8.debug chmod 0644 -- debian/.debhelper/comet-ms/dbgsym-root/usr/lib/debug/.build-id/52/715e99a73dc703bdc20630aa83bec8c86f50b8.debug chown 0:0 -- debian/.debhelper/comet-ms/dbgsym-root/usr/lib/debug/.build-id/52/715e99a73dc703bdc20630aa83bec8c86f50b8.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/comet-ms/usr/bin/comet-ms i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/comet-ms/dbgsym-root/usr/lib/debug/.build-id/52/715e99a73dc703bdc20630aa83bec8c86f50b8.debug debian/comet-ms/usr/bin/comet-ms install -m0755 -d debian/.debhelper/comet-ms/dbgsym-root/usr/share/doc ln -s comet-ms debian/.debhelper/comet-ms/dbgsym-root/usr/share/doc/comet-ms-dbgsym install -m0755 -d debian/.debhelper/comet-ms dh_makeshlibs -a rm -f debian/comet-ms/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/comet-ms/DEBIAN dpkg-shlibdeps -Tdebian/comet-ms.substvars debian/comet-ms/usr/bin/comet-ms dh_installdeb -a install -m0755 -d debian/comet-ms/DEBIAN dh_gencontrol -a install -m0755 -d debian/comet-ms/DEBIAN echo misc:Depends= >> debian/comet-ms.substvars echo misc:Pre-Depends= >> debian/comet-ms.substvars install -m0755 -d debian/.debhelper/comet-ms/dbgsym-root/DEBIAN dpkg-gencontrol -pcomet-ms -ldebian/changelog -Tdebian/comet-ms.substvars -Pdebian/.debhelper/comet-ms/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=comet-ms-dbgsym "-DDepends=comet-ms (= \${binary:Version})" "-DDescription=debug symbols for comet-ms" -DBuild-Ids=52715e99a73dc703bdc20630aa83bec8c86f50b8 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/comet-ms/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/comet-ms/dbgsym-root/DEBIAN/control dpkg-gencontrol -pcomet-ms -ldebian/changelog -Tdebian/comet-ms.substvars -Pdebian/comet-ms chmod 0644 -- debian/comet-ms/DEBIAN/control chown 0:0 -- debian/comet-ms/DEBIAN/control dh_md5sums -a install -m0755 -d debian/comet-ms/DEBIAN cd debian/comet-ms >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/comet-ms/DEBIAN/md5sums chown 0:0 -- debian/comet-ms/DEBIAN/md5sums install -m0755 -d debian/.debhelper/comet-ms/dbgsym-root/DEBIAN cd debian/.debhelper/comet-ms/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/comet-ms/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/comet-ms/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/comet-ms .. dpkg-deb: building package 'comet-ms' in '../comet-ms_2019015+cleaned1-4_i386.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/comet-ms/dbgsym-root .. dpkg-deb: building package 'comet-ms-dbgsym' in '../comet-ms-dbgsym_2019015+cleaned1-4_i386.deb'. dpkg-genbuildinfo --build=any -O../comet-ms_2019015+cleaned1-4_i386.buildinfo dpkg-genchanges --build=any -O../comet-ms_2019015+cleaned1-4_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-10T15:31:32Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ comet-ms_2019015+cleaned1-4_i386.changes: ----------------------------------------- Format: 1.8 Date: Fri, 24 Nov 2023 15:11:18 +0100 Source: comet-ms Binary: comet-ms comet-ms-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 2019015+cleaned1-4 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: comet-ms - Tandem mass spectrometry (MS/MS) search engine Closes: 1043799 Changes: comet-ms (2019015+cleaned1-4) unstable; urgency=low . * Fix the Bug#1043799: comet-ms: Fails to build source after successful build (Closes: #1043799). . * Fix the hardening flags. Checksums-Sha1: e030aef31b93c27ab3275a1eea0b61b5533e4f09 1673544 comet-ms-dbgsym_2019015+cleaned1-4_i386.deb af0037e6aca045b9899526bc6983b2e4ab89f52f 5648 comet-ms_2019015+cleaned1-4_i386.buildinfo fded3404f75059d3e59fc70dbde605978ae134d6 838340 comet-ms_2019015+cleaned1-4_i386.deb Checksums-Sha256: d3dbcf8d269c4f3238a7d37e4f1457f92135c3ea4e2055271e2ca29040d28909 1673544 comet-ms-dbgsym_2019015+cleaned1-4_i386.deb 34d98b48f1ef85dc524788e00d0a5d384a2eac04882a14c2e258afc048d5dcd4 5648 comet-ms_2019015+cleaned1-4_i386.buildinfo 6cfb615c2b413559250a3ae457bcccfa4e0a6a60d35243ab98adcde35c1bd80b 838340 comet-ms_2019015+cleaned1-4_i386.deb Files: 905e1445983f2d0b72e10a27810951ab 1673544 debug optional comet-ms-dbgsym_2019015+cleaned1-4_i386.deb 552c4fbea8603644cbd3db4011bb0171 5648 science optional comet-ms_2019015+cleaned1-4_i386.buildinfo cbf698d35975af65974db2344801a5ce 838340 science optional comet-ms_2019015+cleaned1-4_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: comet-ms Binary: comet-ms comet-ms-dbgsym Architecture: i386 Version: 2019015+cleaned1-4 Checksums-Md5: 905e1445983f2d0b72e10a27810951ab 1673544 comet-ms-dbgsym_2019015+cleaned1-4_i386.deb cbf698d35975af65974db2344801a5ce 838340 comet-ms_2019015+cleaned1-4_i386.deb Checksums-Sha1: e030aef31b93c27ab3275a1eea0b61b5533e4f09 1673544 comet-ms-dbgsym_2019015+cleaned1-4_i386.deb fded3404f75059d3e59fc70dbde605978ae134d6 838340 comet-ms_2019015+cleaned1-4_i386.deb Checksums-Sha256: d3dbcf8d269c4f3238a7d37e4f1457f92135c3ea4e2055271e2ca29040d28909 1673544 comet-ms-dbgsym_2019015+cleaned1-4_i386.deb 6cfb615c2b413559250a3ae457bcccfa4e0a6a60d35243ab98adcde35c1bd80b 838340 comet-ms_2019015+cleaned1-4_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 10 Jan 2024 15:31:31 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.41.50.20231227-1), binutils-aarch64-linux-gnu (= 2.41.50.20231227-1), binutils-common (= 2.41.50.20231227-1), bsdextrautils (= 2.39.3-6), bsdutils (= 1:2.39.3-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), coreutils (= 9.4-3), cpp (= 4:13.2.0-2), cpp-13 (= 13.2.0-9), dash (= 0.5.12-6), debconf (= 1.5.83), debhelper (= 13.11.9), debianutils (= 5.16), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), docbook (= 4.5-10), docbook-to-man (= 1:2.0.0-45), dpkg (= 1.22.2), dpkg-dev (= 1.22.2), dwz (= 0.15-1), file (= 1:5.45-2+b1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2), g++-13 (= 13.2.0-9), gcc (= 4:13.2.0-2), gcc-13 (= 13.2.0-9), gcc-13-base (= 13.2.0-9), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-4), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9), libatomic1 (= 13.2.0-9), libattr1 (= 1:2.5.1-5), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231227-1), libblkid1 (= 2.39.3-6), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-13), libc-dev-bin (= 2.37-13), libc6 (= 2.37-13), libc6-dev (= 2.37-13), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4+b2), libcc1-0 (= 13.2.0-9), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.41.50.20231227-1), libctf0 (= 2.41.50.20231227-1), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.9), libdpkg-perl (= 1.22.2), libelf1 (= 0.190-1+b1), libexpat1 (= 2.5.0-2+b2), libexpat1-dev (= 2.5.0-2+b2), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-9), libgcc-s1 (= 13.2.0-9), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-9), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41.50.20231227-1), libgssapi-krb5-2 (= 1.20.1-5), libhwasan0 (= 13.2.0-9), libicu72 (= 72.1-4), libisl23 (= 0.26-3+b2), libitm1 (= 13.2.0-9), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2+b2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), liblsan0 (= 13.2.0-9), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2+b1), libmagic1 (= 1:5.45-2+b1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1), libmstoolkit-dev (= 82-7), libmstoolkit82 (= 82-7), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libosp5 (= 1.5.2-14), libpam-modules (= 1.5.2-9.1+b1), libpam-modules-bin (= 1.5.2-9.1+b1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1+b1), libpcre2-8-0 (= 10.42-4), libperl5.38 (= 5.38.2-2), libpipeline1 (= 1.5.7-1+b2), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-1+b2), libsframe1 (= 2.41.50.20231227-1), libsmartcols1 (= 2.39.3-6), libsqlite3-0 (= 3.44.2-1), libsqlite3-dev (= 3.44.2-1), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-9), libstdc++6 (= 13.2.0-9), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-4), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9), libubsan1 (= 13.2.0-9), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-4), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.9-1), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), opensp (= 1.5.2-14), patch (= 2.7.6-7), perl (= 5.38.2-2), perl-base (= 5.38.2-2), perl-modules-5.38 (= 5.38.2-2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.20), sgml-base (= 1.31), sgml-data (= 2.0.11+nmu1), sysvinit-utils (= 3.08-5), tar (= 1.35+dfsg-2), usrmerge (= 38), util-linux (= 2.39.3-6), xml-core (= 0.19), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3), zlib1g-dev (= 1:1.3.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1700835078" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ comet-ms-dbgsym_2019015+cleaned1-4_i386.deb ------------------------------------------- new Debian package, version 2.0. size 1673544 bytes: control archive=540 bytes. 383 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: comet-ms-dbgsym Source: comet-ms Version: 2019015+cleaned1-4 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: The Debichem Group Installed-Size: 1694 Depends: comet-ms (= 2019015+cleaned1-4) Section: debug Priority: optional Description: debug symbols for comet-ms Build-Ids: 52715e99a73dc703bdc20630aa83bec8c86f50b8 drwxr-xr-x root/root 0 2023-11-24 14:11 ./ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/lib/debug/.build-id/52/ -rw-r--r-- root/root 1723680 2023-11-24 14:11 ./usr/lib/debug/.build-id/52/715e99a73dc703bdc20630aa83bec8c86f50b8.debug drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/share/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-11-24 14:11 ./usr/share/doc/comet-ms-dbgsym -> comet-ms comet-ms_2019015+cleaned1-4_i386.deb ------------------------------------ new Debian package, version 2.0. size 838340 bytes: control archive=852 bytes. 764 bytes, 17 lines control 262 bytes, 4 lines md5sums Package: comet-ms Version: 2019015+cleaned1-4 Architecture: i386 Maintainer: The Debichem Group Installed-Size: 2428 Depends: libmstoolkit82 (>= 82), libc6 (>= 2.34), libgcc-s1 (>= 4.2), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: http://comet-ms.sourceforge.net Description: Tandem mass spectrometry (MS/MS) search engine Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. . This package ships a binary that does MS/MS database searches. Supported input formats are mzXML, mzML, and ms2 files. Supported output formats are .out, SQT, and pepXML. drwxr-xr-x root/root 0 2023-11-24 14:11 ./ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/bin/ -rwxr-xr-x root/root 2471072 2023-11-24 14:11 ./usr/bin/comet-ms drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/share/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/share/doc/comet-ms/ -rw-r--r-- root/root 633 2023-11-24 14:11 ./usr/share/doc/comet-ms/changelog.Debian.gz -rw-r--r-- root/root 2584 2023-11-24 14:09 ./usr/share/doc/comet-ms/copyright drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/share/man/ drwxr-xr-x root/root 0 2023-11-24 14:11 ./usr/share/man/man1/ -rw-r--r-- root/root 668 2023-11-24 14:11 ./usr/share/man/man1/comet-ms.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1385 B] Get:5 copy:/<>/apt_archive ./ Packages [1462 B] Fetched 3462 B in 0s (193 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: The following packages have unmet dependencies: libnetaddr-ip-perl : Depends: perlapi-5.36.0 but it is not installable libnet-ssleay-perl : Depends: perlapi-5.36.0 but it is not installable libsereal-decoder-perl : Depends: perlapi-5.36.0 but it is not installable libsyntax-keyword-try-perl : Depends: perlapi-5.36.0 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.36.0 but it is not installable libtext-xslate-perl : Depends: perlapi-5.36.0 but it is not installable Depends: libdata-messagepack-perl but it is not going to be installed Depends: libmouse-perl but it is not going to be installed libparams-classify-perl : Depends: libdevel-callchecker-perl but it is not going to be installed Depends: perlapi-5.36.0 but it is not installable libhtml-parser-perl : Depends: perlapi-5.36.0 but it is not installable libberkeleydb-perl : Depends: perlapi-5.36.0 but it is not installable libunicode-utf8-perl : Depends: perlapi-5.36.0 but it is not installable libparams-util-perl : Depends: perlapi-5.36.0 but it is not installable libtime-moment-perl : Depends: perlapi-5.36.0 but it is not installable libclone-perl : Depends: perlapi-5.36.0 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.36.0 but it is not installable libapt-pkg-perl : Depends: perlapi-5.36.0 but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:i386 : Depends: lintian:arm64 E: External solver failed with: The following packages have unmet dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 49288 Build-Time: 342 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 52 Job: comet-ms_2019015+cleaned1-4 Lintian: error Machine Architecture: arm64 Package: comet-ms Package-Time: 441 Source-Version: 2019015+cleaned1-4 Space: 49288 Status: successful Version: 2019015+cleaned1-4 -------------------------------------------------------------------------------- Finished at 2024-01-10T15:31:32Z Build needed 00:07:21, 49288k disk space