sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | concavity 0.1+dfsg.1-4 (arm64) Fri, 04 Oct 2019 16:51:28 +0000 | +==============================================================================+ Package: concavity Version: 0.1+dfsg.1-4 Source Version: 0.1+dfsg.1-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-3bd88d41-4344-422c-9a3c-4b8296b65499' with '<>' I: NOTICE: Log filtering will replace 'build/concavity-GFNqVf/resolver-GMN2G1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-04-0810.11.pdiff [3779 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-04-1411.26.pdiff [9049 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-04-1411.26.pdiff [9049 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-04-0810.11.pdiff [4573 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-04-1411.26.pdiff [10.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-04-1411.26.pdiff [10.4 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8049 kB] Fetched 8272 kB in 2s (4228 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'concavity' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/concavity.git Please use: git clone https://salsa.debian.org/med-team/concavity.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 327 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main concavity 0.1+dfsg.1-4 (dsc) [2046 B] Get:2 http://debian.oregonstate.edu/debian unstable/main concavity 0.1+dfsg.1-4 (tar) [310 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main concavity 0.1+dfsg.1-4 (diff) [14.4 kB] Fetched 327 kB in 0s (6874 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/concavity-GFNqVf/concavity-0.1+dfsg.1' with '<>' I: NOTICE: Log filtering will replace 'build/concavity-GFNqVf' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 11~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [402 B] Get:5 copy:/<>/apt_archive ./ Packages [492 B] Fetched 1851 B in 0s (91.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 62.9 MB of archives. After this operation, 262 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [912 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-8 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190909-1 [2774 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-8cross1 [193 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [6536 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.29-1cross7 [1253 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-8cross1 [34.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-8cross1 [76.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-8cross1 [24.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-8cross1 [8640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-8cross1 [347 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-8cross1 [122 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-8cross1 [267 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-8cross1 [416 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-8cross1 [117 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-8cross1 [888 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [6896 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.2.9-2cross7 [1310 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.29-1cross7 [2273 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-8cross1 [1632 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [7113 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.66-2 [103 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.6.1 [172 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.0-3 [1316 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.6.1 [993 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-8 [34.1 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.29-2 [2464 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-8 [354 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-8 [8852 B] Get:82 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.2.17-1 [1230 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.29-2 [2287 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-8 [78.4 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-8 [24.7 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-8 [123 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-8 [274 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-8 [454 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-8 [118 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-8 [878 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-8 [1653 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.9 MB in 1s (73.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... 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Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libarchive-zip-perl (1.66-2) ... Setting up libglib2.0-0:amd64 (2.62.0-3) ... No schema files found: doing nothing. Setting up gcc-9-aarch64-linux-gnu-base:amd64 (9.2.1-8cross1) ... Setting up libdebhelper-perl (12.6.1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up linux-libc-dev:arm64 (5.2.17-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190909-1) ... Setting up cpp-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.29-1cross7) ... Setting up autopoint (0.19.8.1-9) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up linux-libc-dev-arm64-cross (5.2.9-2cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-9-base:arm64 (9.2.1-8) ... Setting up libatomic1-arm64-cross (9.2.1-8cross1) ... Setting up libgcc1-arm64-cross (1:9.2.1-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up liblsan0-arm64-cross (9.2.1-8cross1) ... Setting up libgomp1-arm64-cross (9.2.1-8cross1) ... Setting up libtool (2.4.6-11) ... Setting up libtsan0-arm64-cross (9.2.1-8cross1) ... Setting up m4 (1.4.18-2) ... Setting up libc6-dev-arm64-cross (2.29-1cross7) ... Setting up libasan5-arm64-cross (9.2.1-8cross1) ... Setting up libstdc++6-arm64-cross (9.2.1-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (9.2.1-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libubsan1-arm64-cross (9.2.1-8cross1) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-8cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.2.1-8cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libc6:arm64 (2.29-2) ... Setting up libc6-dev:arm64 (2.29-2) ... Setting up libitm1:arm64 (9.2.1-8) ... Setting up libgcc1:arm64 (1:9.2.1-8) ... Setting up libgomp1:arm64 (9.2.1-8) ... Setting up dh-autoreconf (19) ... Setting up libasan5:arm64 (9.2.1-8) ... Setting up libatomic1:arm64 (9.2.1-8) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up libstdc++6:arm64 (9.2.1-8) ... Setting up liblsan0:arm64 (9.2.1-8) ... Setting up libtsan0:arm64 (9.2.1-8) ... Setting up debhelper (12.6.1) ... Setting up libubsan1:arm64 (9.2.1-8) ... Setting up libgcc-9-dev:arm64 (9.2.1-8) ... Setting up libstdc++-9-dev:arm64 (9.2.1-8) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190909-1 dpkg-dev_1.19.7 g++-8_8.3.0-23 g++-9_9.2.1-8 gcc-8_8.3.0-23 gcc-9_9.2.1-8 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-arm64-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-arm64-cross_9.2.1-8cross1 linux-libc-dev_5.2.17-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1 binutils-aarch64-linux-gnu_2.32.51.20190909-1 binutils-common_2.32.51.20190909-1 binutils-x86-64-linux-gnu_2.32.51.20190909-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-23 cpp-9_9.2.1-8 cpp-9-aarch64-linux-gnu_9.2.1-8cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-23 g++-9_9.2.1-8 g++-9-aarch64-linux-gnu_9.2.1-8cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-23 gcc-8-base_8.3.0-23 gcc-9_9.2.1-8 gcc-9-aarch64-linux-gnu_9.2.1-8cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-8cross1 gcc-9-base_9.2.1-8 gcc-9-cross-base_9.2.1-8cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.66-2 libasan5_9.2.1-8 libasan5-arm64-cross_9.2.1-8cross1 libatomic1_9.2.1-8 libatomic1-arm64-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-arm64-cross_2.29-1cross7 libc6-dev_2.29-2 libc6-dev-arm64-cross_2.29-1cross7 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-8 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-23 libgcc-9-dev_9.2.1-8 libgcc-9-dev-arm64-cross_9.2.1-8cross1 libgcc1_1:9.2.1-8 libgcc1-arm64-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.0-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8 libgomp1-arm64-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-8 libitm1-arm64-cross_9.2.1-8cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-8 liblsan0-arm64-cross_9.2.1-8cross1 liblz4-1_1.8.3-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-23 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.2.1-8 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-arm64-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-arm64-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-8 libtsan0-arm64-cross_9.2.1-8cross1 libubsan1_9.2.1-8 libubsan1-arm64-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.17-1 linux-libc-dev-arm64-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-3 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: concavity Binary: concavity Architecture: any Version: 0.1+dfsg.1-4 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: http://compbio.cs.princeton.edu/concavity/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/concavity Vcs-Git: https://salsa.debian.org/med-team/concavity.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: concavity deb science optional arch=any Checksums-Sha1: dbc00046f42c9523b68fdc4a0a660e3d5bb375bd 310216 concavity_0.1+dfsg.1.orig.tar.xz b5d121bfab2b3a415340d0fb5ebabafe68d80aff 14360 concavity_0.1+dfsg.1-4.debian.tar.xz Checksums-Sha256: a73bd2c8781e90c7e4d0e350deaff94ebde08391038a6abe551df2da05e3f819 310216 concavity_0.1+dfsg.1.orig.tar.xz fb1497b6119116d2ad1f449de319c523419a420765548568eefdd80de0b18cba 14360 concavity_0.1+dfsg.1-4.debian.tar.xz Files: c02e7e028b066ee61ac021fc6d185e4e 310216 concavity_0.1+dfsg.1.orig.tar.xz 6dde668ba5212ee1374ea70393fec02c 14360 concavity_0.1+dfsg.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwK/tkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEsqg//WOi1LGf1ymX/BjPmnjGshwMWnLmcWrZR UbjrXZdMM0BSrzSbKk3qhVeYOrJjV5PDmPbJHvwOgYdb9eppOZixRfPafFxBH7Ki 8VaPDvgxfSm/c9yWAdRQ4NgJLXrC2smsvCC9j+GMrHDZEJs6RtKDVCw9X9AxE703 Tf6ij6/30l0cDMxXcj9ndNK7Jas3rC01QYDAvvzMuZraxR//f5tMXdpJC2NOUrTf ZECovlgOjAYb7L2wblTPZI3oF7ks60PxjzOr/yh5BjIi0FvVY4uyszF1sUUgUVgk WvtF3ng4ULl7Ju1UjLfaxoDdGjV02QbQ51MQKJi0Op0oHtSw7tCdewtE0EzOfXIe 7gDawGQiOR2+PKX1/0h9JthowTVzideU1wnF7j/cLZsumlwKRJsLI+R5lTV3XYX5 dG4MCwHtu+nHxwxIJvxzi16caz9SSpkllYj3kfpGuRZXMO02bnTxPCN01SL7wGEy TAZgcZDT+rqstCO8ByXaHfXwCmBZbyBcsUuptl/7oeclIgjqKhAOaKTRO8Vt97jR KEpld54wh854ASCXmg58zi76Kk+oq7mwGPsKV6YEWf0P9EjpFbwj19VaoeFsU/FN fkxbJ63v/RhM5eG1FxXu5ux7394ECu/ragZ+KWrSNjaVFAmuqAE9vj4k+sJCJfJL ZzUNAHRwE8U= =+Z7P -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 7 23:14:33 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./concavity_0.1+dfsg.1-4.dsc dpkg-source: info: extracting concavity in /<> dpkg-source: info: unpacking concavity_0.1+dfsg.1.orig.tar.xz dpkg-source: info: unpacking concavity_0.1+dfsg.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying default_target_all dpkg-source: info: applying safe_recursive_make dpkg-source: info: applying freeglut dpkg-source: info: applying CFLAGSasf dpkg-source: info: applying spelling dpkg-source: info: applying noopengllink dpkg-source: info: applying compiler_errors dpkg-source: info: applying manpage dpkg-source: info: applying threshold_range_cutoff dpkg-source: info: applying remove_ply dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-3bd88d41-4344-422c-9a3c-4b8296b65499 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package concavity dpkg-buildpackage: info: source version 0.1+dfsg.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f ChangeLog make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[1]: Entering directory '/<>' make target "TARGET=opt" make[2]: Entering directory '/<>' cd pkgs && make opt make[3]: Entering directory '/<>/pkgs' make target "TARGET=opt" make[4]: Entering directory '/<>/pkgs' cd RNBasics && make opt make[5]: Entering directory '/<>/pkgs/RNBasics' make ../../lib/x86_64/libRNBasics.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/<>/pkgs/RNBasics' aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNBasics.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNTime.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNGrfx.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNRgb.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNHeap.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNQueue.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNArray.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNSvd.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNIntval.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNScalar.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNType.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNFlags.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNMem.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNError.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c RNBase.C mkdir -p ../../lib/x86_64 rm -f ../../lib/x86_64/libRNBasics.a ar ur ../../lib/x86_64/libRNBasics.a RNBasics.o RNTime.o RNGrfx.o RNRgb.o RNHeap.o RNQueue.o RNArray.o RNSvd.o RNIntval.o RNScalar.o RNType.o RNFlags.o RNMem.o RNError.o RNBase.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/x86_64/libRNBasics.a make[6]: Leaving directory '/<>/pkgs/RNBasics' make[5]: Leaving directory '/<>/pkgs/RNBasics' cd R2Shapes && make opt make[5]: Entering directory '/<>/pkgs/R2Shapes' make ../../lib/x86_64/libR2Shapes.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/<>/pkgs/R2Shapes' aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Shapes.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Draw.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Io.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Dist.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Cont.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Isect.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Parall.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Perp.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Relate.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Grid.C R2Grid.C: In member function ‘int R2Grid::WriteRAW(const char*) const’: R2Grid.C:2325:54: warning: narrowing conversion of ‘(int)((const R2Grid*)this)->R2Grid::grid_resolution[0]’ from ‘int’ to ‘unsigned int’ [-Wnarrowing] 2325 | unsigned int header[4] = { magic, grid_resolution[0], grid_resolution[1], 1 }; | ~~~~~~~~~~~~~~~~~^ R2Grid.C:2325:74: warning: narrowing conversion of ‘(int)((const R2Grid*)this)->R2Grid::grid_resolution[1]’ from ‘int’ to ‘unsigned int’ [-Wnarrowing] 2325 | unsigned int header[4] = { magic, grid_resolution[0], grid_resolution[1], 1 }; | ~~~~~~~~~~~~~~~~~^ R2Grid.C: In member function ‘int R2Grid::ReadPFM(const char*)’: R2Grid.C:2373:9: warning: variable ‘endian’ set but not used [-Wunused-but-set-variable] 2373 | float endian; | ^~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Arc.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Curve.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Polygon.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Circle.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Box.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Solid.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Shape.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Affine.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Xform.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Matrix.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Halfspace.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Span.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Ray.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Line.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Point.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Vector.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Image.C R2Image.C: In member function ‘int R2Image::ReadPFM(const char*)’: R2Image.C:856:8: warning: variable ‘endian_string’ set but not used [-Wunused-but-set-variable] 856 | char endian_string[256]; | ^~~~~~~~~~~~~ R2Image.C: In member function ‘int R2Image::WriteRAW(const char*) const’: R2Image.C:1305:37: warning: narrowing conversion of ‘(int)((const R2Image*)this)->R2Image::width’ from ‘int’ to ‘unsigned int’ [-Wnarrowing] 1305 | unsigned int header[4] = { magic, width, height, ncomponents }; | ^~~~~ R2Image.C:1305:44: warning: narrowing conversion of ‘(int)((const R2Image*)this)->R2Image::height’ from ‘int’ to ‘unsigned int’ [-Wnarrowing] 1305 | unsigned int header[4] = { magic, width, height, ncomponents }; | ^~~~~~ R2Image.C:1305:52: warning: narrowing conversion of ‘(int)((const R2Image*)this)->R2Image::ncomponents’ from ‘int’ to ‘unsigned int’ [-Wnarrowing] 1305 | unsigned int header[4] = { magic, width, height, ncomponents }; | ^~~~~~~~~~~ mkdir -p ../../lib/x86_64 rm -f ../../lib/x86_64/libR2Shapes.a ar ur ../../lib/x86_64/libR2Shapes.a R2Shapes.o R2Draw.o R2Io.o R2Dist.o R2Cont.o R2Isect.o R2Parall.o R2Perp.o R2Relate.o R2Grid.o R2Arc.o R2Curve.o R2Polygon.o R2Circle.o R2Box.o R2Solid.o R2Shape.o R2Affine.o R2Xform.o R3Matrix.o R2Halfspace.o R2Span.o R2Ray.o R2Line.o R2Point.o R2Vector.o R2Image.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/x86_64/libR2Shapes.a make[6]: Leaving directory '/<>/pkgs/R2Shapes' make[5]: Leaving directory '/<>/pkgs/R2Shapes' cd R3Shapes && make opt make[5]: Entering directory '/<>/pkgs/R3Shapes' make ../../lib/x86_64/libR3Shapes.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/<>/pkgs/R3Shapes' aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Shapes.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Draw.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3MeshSearchTree.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Kdtree.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Isect.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Cont.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Dist.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Parall.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Perp.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Relate.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Align.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Mesh.C R3Mesh.C: In member function ‘R3MeshType R3Mesh::Intersection(const R3Ray&, R3MeshIntersection*) const’: R3Mesh.C:1705:14: warning: variable ‘min_t’ set but not used [-Wunused-but-set-variable] 1705 | RNScalar min_t = FLT_MAX; | ^~~~~ In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from R3Mesh.C:8: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘void R3Mesh::SetName(const char*)’ at ../../pkgs/R3Shapes/R3Mesh.h:908:10, inlined from ‘int R3Mesh::ReadFile(const char*)’ at R3Mesh.C:2001:35: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 128 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Ellipse.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Circle.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3TriangleArray.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Triangle.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Surface.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Ellipsoid.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Sphere.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Cone.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Cylinder.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Box.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Solid.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Shape.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Affine.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Xform.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Crdsys.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Triad.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R4Matrix.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Grid.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Halfspace.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Plane.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Span.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Ray.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Line.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Point.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Vector.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Base.C mkdir -p ../../lib/x86_64 rm -f ../../lib/x86_64/libR3Shapes.a ar ur ../../lib/x86_64/libR3Shapes.a R3Shapes.o R3Draw.o R3MeshSearchTree.o R3Kdtree.o R3Isect.o R3Cont.o R3Dist.o R3Parall.o R3Perp.o R3Relate.o R3Align.o R3Mesh.o R3Ellipse.o R3Circle.o R3TriangleArray.o R3Triangle.o R3Surface.o R3Ellipsoid.o R3Sphere.o R3Cone.o R3Cylinder.o R3Box.o R3Solid.o R3Shape.o R3Affine.o R3Xform.o R3Crdsys.o R3Triad.o R4Matrix.o R3Grid.o R3Halfspace.o R3Plane.o R3Span.o R3Ray.o R3Line.o R3Point.o R3Vector.o R3Base.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/x86_64/libR3Shapes.a make[6]: Leaving directory '/<>/pkgs/R3Shapes' make[5]: Leaving directory '/<>/pkgs/R3Shapes' #cd R3Graphics && make opt cd PDB && make opt make[5]: Entering directory '/<>/pkgs/PDB' make ../../lib/x86_64/libPDB.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/<>/pkgs/PDB' aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDB.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBElement.C In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from PDB.h:10, from PDBElement.C:7: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBElement::PDBElement(int, const char*, int, RNScalar, RNLength, RNLength, RNLength, RNScalar, RNScalar, const RNRgb&)’ at PDBElement.C:55:22: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBAminoAcid.C In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from PDB.h:10, from PDBAminoAcid.C:7: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBAminoAcid::PDBAminoAcid(int, char*, char*, char, int, int, RNScalar, const RNRgb&)’ at PDBAminoAcid.C:59:22: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBAminoAcid::PDBAminoAcid(int, char*, char*, char, int, int, RNScalar, const RNRgb&)’ at PDBAminoAcid.C:63:22, inlined from ‘PDBAminoAcid::PDBAminoAcid(int, char*, char*, char, int, int, RNScalar, const RNRgb&)’ at PDBAminoAcid.C:45:1: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBAtom.C In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from PDB.h:10, from PDBAtom.C:7: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBAtom::PDBAtom(PDBModel*, PDBChain*, PDBResidue*, PDBElement*, int, const char*, int, RNScalar, RNScalar, RNScalar, RNScalar, RNScalar, RNScalar, RNBoolean)’ at PDBAtom.C:39:22: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 8 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBResidue.C In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from PDB.h:10, from PDBResidue.C:7: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBResidue::PDBResidue(PDBModel*, PDBChain*, const char*, int, int)’ at PDBResidue.C:31:22: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBChain.C In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from PDB.h:10, from PDBChain.C:7: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBChain::PDBChain(PDBModel*, const char*)’ at PDBChain.C:24:22: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBModel.C In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from PDB.h:10, from PDBModel.C:7: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBModel::PDBModel(PDBFile*, const char*)’ at PDBModel.C:24:22: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 32 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBFile.C PDBFile.C: In member function ‘int PDBFile::ReadConsurfFiles(char*)’: PDBFile.C:867:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 867 | RNBoolean found = 0; | ^~~~~ PDBFile.C: In member function ‘int PDBFile::ReadHsspFiles(char*)’: PDBFile.C:1009:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 1009 | RNBoolean found = 0; | ^~~~~ In file included from /usr/aarch64-linux-gnu/include/string.h:494, from ../../pkgs/RNBasics/RNExtern.h:11, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from PDB.h:10, from PDBFile.C:7: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘PDBFile::PDBFile(const char*)’ at PDBFile.C:22:22, inlined from ‘PDBFile::PDBFile(const char*)’ at PDBFile.C:11:1: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 128 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int PDBFile::Read(FILE*)’ at PDBFile.C:271:31: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int PDBFile::Read(FILE*)’ at PDBFile.C:278:40: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 8 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int PDBFile::Read(FILE*)’ at PDBFile.C:280:41: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 8 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int PDBFile::Read(FILE*)’ at PDBFile.C:282:35: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int PDBFile::Read(FILE*)’ at PDBFile.C:283:37: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int PDBFile::ReadGrowFile(char*)’ at PDBFile.C:1592:35: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int PDBFile::ReadGrowFile(char*)’ at PDBFile.C:1600:35: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBBond.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBAtomTypes.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBUtil.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBDistance.C mkdir -p ../../lib/x86_64 rm -f ../../lib/x86_64/libPDB.a ar ur ../../lib/x86_64/libPDB.a PDB.o PDBElement.o PDBAminoAcid.o PDBAtom.o PDBResidue.o PDBChain.o PDBModel.o PDBFile.o PDBBond.o PDBAtomTypes.o PDBUtil.o PDBDistance.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/x86_64/libPDB.a make[6]: Leaving directory '/<>/pkgs/PDB' make[5]: Leaving directory '/<>/pkgs/PDB' #cd freeglut && make opt make[4]: Leaving directory '/<>/pkgs' make[3]: Leaving directory '/<>/pkgs' cd apps && make opt make[3]: Entering directory '/<>/apps' make target "TARGET=opt" make[4]: Entering directory '/<>/apps' cd concavity && make opt make[5]: Entering directory '/<>/apps/concavity' make ../../bin/x86_64/concavity "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS= -L../../lib/x86_64 -O -L../../lib/x86_64 -g -Wl,-z,relro -Wl,-z,now" make[6]: Entering directory '/<>/apps/concavity' aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c grid_creation.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c pocket_extraction.C aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c concavity.C concavity.C: In function ‘int main(int, char**)’: concavity.C:759:35: warning: ‘.grd’ directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 759 | sprintf(grid_outfile, "%s_%s.grd", pdb_id, output_basename); | ^~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 1029) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:764:35: warning: ‘.dx’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 764 | sprintf(grid_outfile, "%s_%s.dx", pdb_id, output_basename); | ^~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 1028) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:769:35: warning: ‘_pocket.pdb’ directive writing 11 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 769 | sprintf(grid_outfile, "%s_%s_pocket.pdb", pdb_id, output_basename); | ^~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 1036) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:774:35: warning: ‘.grdtxt’ directive writing 7 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 774 | sprintf(grid_outfile, "%s_%s.grdtxt", pdb_id, output_basename); | ^~~~~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 1032) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:318:27: warning: ‘%s’ directive writing up to 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 318 | sprintf(filename, "%s_%s_%s.scores", pdb_id, chain_name, basename); | ^~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 1036) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:386:36: warning: ‘_residue.pdb’ directive writing 12 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 386 | sprintf(res_pred_filename, "%s_%s_residue.pdb", pdb_id, basename); | ^~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 14 or more bytes (assuming 1037) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:821:33: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 256 [-Wformat-overflow=] 821 | sprintf(pymol_script_name, "%s_%s.pml", pdb_id, output_basename); | ^~ ~~~~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 1029) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:839:40: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 256 [-Wformat-overflow=] 839 | sprintf(pymol_pocket_script_name, "%s_%s_pocket.pml", pdb_id, output_basename); | ^~ ~~~~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 1036) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:856:41: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 256 [-Wformat-overflow=] 856 | sprintf(pymol_residue_script_name, "%s_%s_residue.pml", pdb_id, output_basename); | ^~ ~~~~~~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:867, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 14 or more bytes (assuming 1037) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../bin/x86_64 aarch64-linux-gnu-g++ -o ../../bin/x86_64/concavity -L../../lib/x86_64 -O -L../../lib/x86_64 -g -Wl,-z,relro -Wl,-z,now grid_creation.o pocket_extraction.o concavity.o -lPDB -lR3Shapes -lR2Shapes -lRNBasics make[6]: Leaving directory '/<>/apps/concavity' make[5]: Leaving directory '/<>/apps/concavity' make[4]: Leaving directory '/<>/apps' make[3]: Leaving directory '/<>/apps' make[2]: Leaving directory '/<>' sed -e 's|__docdir__|/usr/share/doc/concavity|g;s|__pkgdatadir__||g;s|__sysconfdir__||g;s|__bindir__||g;s|__VERSION__|0.1.1|g;s|__PACKAGE_VERSION__||g;' "concavity.1.pod" | \ pod2man -c 'User Commands' -r "0.1.1" -name CONCAVITY > "concavity.1" make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' sed -ne '/^--- Revision History ---/,/^---/{ /^--- Inst/d; p; }' README.txt > ChangeLog dh_installchangelogs make[1]: Leaving directory '/<>' dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'concavity' in '../concavity_0.1+dfsg.1-4_arm64.deb'. dpkg-deb: building package 'concavity-dbgsym' in '../concavity-dbgsym_0.1+dfsg.1-4_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../concavity_0.1+dfsg.1-4_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-10-04T16:53:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ concavity_0.1+dfsg.1-4_arm64.changes: ------------------------------------- Format: 1.8 Date: Sat, 08 Dec 2018 00:08:02 +0100 Source: concavity Binary: concavity concavity-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 0.1+dfsg.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: concavity - predictor of protein ligand binding sites from structure and cons Closes: 904145 Changes: concavity (0.1+dfsg.1-4) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Helmut Grohne ] * Make sure C++ compiler is used for C++ sources Closes: #904145 . [ Andreas Tille ] * Standards-Version: 4.2.1 Checksums-Sha1: bff9d082fc4759ad0b5a7c0eeee4df60943c7a27 1645808 concavity-dbgsym_0.1+dfsg.1-4_arm64.deb c2673f36cd6f695625491319b69fcc2432dfefd7 4726 concavity_0.1+dfsg.1-4_arm64.buildinfo fa1087b27df566bfb6248969b246a48ff69725f6 283864 concavity_0.1+dfsg.1-4_arm64.deb Checksums-Sha256: 045054ecff689e3f31e785dd0bf11d3e0a49117ad40c19be456e06c6f57e86ab 1645808 concavity-dbgsym_0.1+dfsg.1-4_arm64.deb 2a22ae535a9b4b1a97c3ed9e798b0e6a6f9d23ed229ef54934552fee2d71e6a6 4726 concavity_0.1+dfsg.1-4_arm64.buildinfo f3a07dc41788a34327a9eea8bd937013c52986b5529102ca7c9ee024f50ce5e9 283864 concavity_0.1+dfsg.1-4_arm64.deb Files: 518ccfe0d16c00e2f9ade732e6926625 1645808 debug optional concavity-dbgsym_0.1+dfsg.1-4_arm64.deb e87c65586674f9eed38d33e272e2fdae 4726 science optional concavity_0.1+dfsg.1-4_arm64.buildinfo 9f31d54dfce3c17e4bc245ad5252248b 283864 science optional concavity_0.1+dfsg.1-4_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: concavity Binary: concavity Architecture: arm64 Version: 0.1+dfsg.1-4 Checksums-Md5: 518ccfe0d16c00e2f9ade732e6926625 1645808 concavity-dbgsym_0.1+dfsg.1-4_arm64.deb 9f31d54dfce3c17e4bc245ad5252248b 283864 concavity_0.1+dfsg.1-4_arm64.deb Checksums-Sha1: bff9d082fc4759ad0b5a7c0eeee4df60943c7a27 1645808 concavity-dbgsym_0.1+dfsg.1-4_arm64.deb fa1087b27df566bfb6248969b246a48ff69725f6 283864 concavity_0.1+dfsg.1-4_arm64.deb Checksums-Sha256: 045054ecff689e3f31e785dd0bf11d3e0a49117ad40c19be456e06c6f57e86ab 1645808 concavity-dbgsym_0.1+dfsg.1-4_arm64.deb f3a07dc41788a34327a9eea8bd937013c52986b5529102ca7c9ee024f50ce5e9 283864 concavity_0.1+dfsg.1-4_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 04 Oct 2019 16:53:07 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190909-1), binutils-common (= 2.32.51.20190909-1), binutils-x86-64-linux-gnu (= 2.32.51.20190909-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-23), cpp-9 (= 9.2.1-8), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.6.1), debianutils (= 4.9), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-8), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-23), gcc-8-base (= 8.3.0-23), gcc-9 (= 9.2.1-8), gcc-9-base (= 9.2.1-8), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.66-2), libasan5 (= 9.2.1-8), libatomic1 (= 9.2.1-8), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190909-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-2), libc-dev-bin (= 2.29-2), libc6 (= 2.29-2), libc6-dev (= 2.29-2), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-8), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdebhelper-perl (= 12.6.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.0-1), libgcc-8-dev (= 8.3.0-23), libgcc-9-dev (= 9.2.1-8), libgcc1 (= 1:9.2.1-8), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.0-3), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-8), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl21 (= 0.21-2), libitm1 (= 9.2.1-8), liblsan0 (= 9.2.1-8), liblz4-1 (= 1.8.3-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-23), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.2.1-8), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-8), libstdc++6 (= 9.2.1-8), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-7), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-8), libubsan1 (= 9.2.1-8), libuchardet0 (= 0.0.6-3), libudev1 (= 242-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.2.17-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.7-3), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96~beta-3), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1544224082" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ concavity-dbgsym_0.1+dfsg.1-4_arm64.deb --------------------------------------- new Debian package, version 2.0. size 1645808 bytes: control archive=540 bytes. 389 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: concavity-dbgsym Source: concavity Version: 0.1+dfsg.1-4 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1742 Depends: concavity (= 0.1+dfsg.1-4) Section: debug Priority: optional Description: debug symbols for concavity Build-Ids: 7c8623369023a693d1bf5a942b6bc9c00ecd448e drwxr-xr-x root/root 0 2018-12-07 23:08 ./ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/lib/debug/.build-id/7c/ -rw-r--r-- root/root 1773400 2018-12-07 23:08 ./usr/lib/debug/.build-id/7c/8623369023a693d1bf5a942b6bc9c00ecd448e.debug drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-12-07 23:08 ./usr/share/doc/concavity-dbgsym -> concavity concavity_0.1+dfsg.1-4_arm64.deb -------------------------------- new Debian package, version 2.0. size 283864 bytes: control archive=1192 bytes. 1101 bytes, 24 lines control 846 bytes, 11 lines md5sums Package: concavity Version: 0.1+dfsg.1-4 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 550 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.0), libstdc++6 (>= 5) Suggests: conservation-code, pymol Section: science Priority: optional Homepage: http://compbio.cs.princeton.edu/concavity/ Description: predictor of protein ligand binding sites from structure and conservation ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure. . ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file. . The following result files are produced by default: * Residue ligand binding predictions for each chain (*.scores). * Residue ligand binding predictions in a PDB format file (residue scores placed in the temp. factor field, *_residue.pdb). * Pocket prediction locations in a DX format file (*.dx). * PyMOL script to visualize the predictions (*.pml). drwxr-xr-x root/root 0 2018-12-07 23:08 ./ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/bin/ -rwxr-xr-x root/root 379896 2018-12-07 23:08 ./usr/bin/concavity drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/doc/concavity/ -rw-r--r-- root/root 1777 2018-12-07 23:08 ./usr/share/doc/concavity/README.test -rw-r--r-- root/root 2955 2010-12-19 17:10 ./usr/share/doc/concavity/README.txt.gz -rw-r--r-- root/root 1030 2018-12-07 23:08 ./usr/share/doc/concavity/changelog.Debian.gz -rw-r--r-- root/root 189 2018-12-07 23:08 ./usr/share/doc/concavity/changelog.gz -rw-r--r-- root/root 1264 2018-12-07 23:08 ./usr/share/doc/concavity/copyright drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/doc/concavity/examples/ -rw-r--r-- root/root 145830 2009-04-13 04:06 ./usr/share/doc/concavity/examples/1G6C.pdb.gz drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/doc/concavity/examples/conservation_data/ -rw-r--r-- root/root 2201 2009-06-22 04:52 ./usr/share/doc/concavity/examples/conservation_data/1G6C_A_jsd.scores.gz -rw-r--r-- root/root 2200 2009-04-13 04:06 ./usr/share/doc/concavity/examples/conservation_data/1G6C_B_jsd.scores.gz lrwxrwxrwx root/root 0 2018-12-07 23:08 ./usr/share/doc/concavity/examples/conservation_data/1G6C_C_jsd.scores.gz -> 1G6C_A_jsd.scores.gz lrwxrwxrwx root/root 0 2018-12-07 23:08 ./usr/share/doc/concavity/examples/conservation_data/1G6C_D_jsd.scores.gz -> 1G6C_B_jsd.scores.gz -rw-r--r-- root/root 1899 2018-12-07 23:08 ./usr/share/doc/concavity/installation-test drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/man/ drwxr-xr-x root/root 0 2018-12-07 23:08 ./usr/share/man/man1/ -rw-r--r-- root/root 4372 2018-12-07 23:08 ./usr/share/man/man1/concavity.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [532 B] Get:5 copy:/<>/apt_archive ./ Packages [619 B] Fetched 2114 B in 0s (102 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 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Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.000008-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006003-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libtype-tiny-perl (1.004004-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 45536 Build-Time: 72 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 17 Job: concavity_0.1+dfsg.1-4 Lintian: pass Machine Architecture: amd64 Package: concavity Package-Time: 100 Source-Version: 0.1+dfsg.1-4 Space: 45536 Status: successful Version: 0.1+dfsg.1-4 -------------------------------------------------------------------------------- Finished at 2019-10-04T16:53:08Z Build needed 00:01:40, 45536k disk space