sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | crac 2.5.2+dfsg-3 (arm64) Sat, 19 Dec 2020 10:53:09 +0000 | +==============================================================================+ Package: crac Version: 2.5.2+dfsg-3 Source Version: 2.5.2+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-8dee2a58-a7a9-4f49-b535-bb313f8b2ff1' with '<>' I: NOTICE: Log filtering will replace 'build/crac-q5DA6v/resolver-RvYIpJ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-19-0800.53.pdiff [2635 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-19-0800.53.pdiff [1672 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-19-0800.53.pdiff [2635 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-19-0800.53.pdiff [1672 B] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8410 kB] Fetched 8623 kB in 8s (1027 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'crac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/crac.git Please use: git clone https://salsa.debian.org/med-team/crac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 674 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main crac 2.5.2+dfsg-3 (dsc) [2047 B] Get:2 http://debian.oregonstate.edu/debian unstable/main crac 2.5.2+dfsg-3 (tar) [658 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main crac 2.5.2+dfsg-3 (diff) [13.5 kB] Fetched 674 kB in 0s (12.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/crac-q5DA6v/crac-2.5.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/crac-q5DA6v' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [451 B] Get:5 copy:/<>/apt_archive ./ Packages [543 B] Fetched 1951 B in 0s (78.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-base:arm64 gcc-10-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdpkg-perl libelf1 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libgcrypt20:arm64 libgkarrays-dev:arm64 libgkarrays1:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgzstream-dev:arm64 libgzstream0:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjellyfish-2.0-2:arm64 libjellyfish-2.0-dev:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2 libnsl2:arm64 libp11-kit0:arm64 libperl5.32 libpipeline1 libpopt0 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1 libssl1.1:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtasn1-6:arm64 libtirpc-common libtirpc-dev libtirpc-dev:arm64 libtirpc3 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf rsync sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 libcurl4-doc:arm64 libgnutls28-dev:arm64 libidn11-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 gnupg git bzr rng-tools:arm64 gnutls-bin:arm64 krb5-doc krb5-user krb5-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 libstdc++-10-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl openssh-client openssh-server python3 Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libnss-nis:arm64 libnss-nisplus:arm64 ca-certificates:arm64 libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:arm64 krb5-locales krb5-locales:arm64 libldap-common:arm64 publicsuffix:arm64 libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-base:arm64 gcc-10-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdpkg-perl libelf1 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libgcrypt20:arm64 libgkarrays-dev:arm64 libgkarrays1:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgzstream-dev:arm64 libgzstream0:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjellyfish-2.0-2:arm64 libjellyfish-2.0-dev:arm64 libk5crypto3 libk5crypto3:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5support0 libkrb5support0:arm64 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2 libnsl2:arm64 libp11-kit0:arm64 libperl5.32 libpipeline1 libpopt0 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1 libssl1.1:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtasn1-6:arm64 libtirpc-common libtirpc-dev libtirpc-dev:arm64 libtirpc3 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf rsync sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. Need to get 276 MB of archives. After this operation, 1201 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [968 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-6 [2820 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-6 [4105 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpopt0 amd64 1.18-2 [49.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1i-1 [1551 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 rsync amd64 3.2.3-2 [333 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10.2.1-1 [201 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.3.0-19 [198 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-3 [33.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-12 [313 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-1 [814 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.35.1-5 [2810 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.18.3-4 [65.1 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.18.3-4 [113 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.18.3-4 [362 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.18.3-4 [165 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-common all 1.2.6-3 [13.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc3 amd64 1.2.6-3 [83.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-6 [2343 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-1 [1741 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-1 [44.7 MB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu-base amd64 10.2.1-1cross1 [201 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-aarch64-linux-gnu amd64 10.2.1-1cross1 [46.6 MB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:10.2.0-1 [16.8 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-1cross1 [197 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.31-5cross1 [1231 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10.2.1-1cross1 [34.5 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10.2.1-1cross1 [89.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10.2.1-1cross1 [23.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10.2.1-1cross1 [9236 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 10.2.1-1cross1 [1995 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10.2.1-1cross1 [793 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10.2.1-1cross1 [1949 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10.2.1-1cross1 [410 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10.2.1-1cross1 [759 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-arm64-cross all 10.2.1-1cross1 [880 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu amd64 10.2.1-1cross1 [53.1 MB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:10.2.0-1 [1456 B] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.9.11-1cross1 [1314 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.31-5cross1 [2012 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-arm64-cross all 10.2.1-1cross1 [1683 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-aarch64-linux-gnu amd64 10.2.1-1cross1 [49.7 MB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:10.2.0-1 [1176 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-5 [8625 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3 [188 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20201015-2 [173 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.4-1 [1367 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3 [1009 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10.2.1-1 [34.6 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.17-1 [89.3 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.31-6 [2457 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.3.0-19 [354 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10.2.1-1 [9456 B] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-4 [46.5 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.9.15-1 [1217 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.17-1 [109 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.45.6-1 [71.6 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.18.3-4 [64.7 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.18.3-4 [114 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6.1-2 [15.4 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1i-1 [1385 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.18.3-4 [346 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.18.3-4 [155 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc3 arm64 1.2.6-3 [79.7 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc-dev arm64 1.2.6-3 [193 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.31-6 [2024 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.2.1+dfsg-1 [541 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle8 arm64 3.6-2 [248 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed6 arm64 3.6-2 [310 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-4 [372 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.3.0-4 [85.7 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libffi7 arm64 3.3-5 [20.6 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.23.22-1 [328 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.16.0-2 [53.5 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.7.0-3 [1272 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.6 [622 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2 [69.2 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2 [105 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.56+dfsg-1 [221 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.42.0-1 [74.7 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.21.0-1.1 [55.1 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main arm64 libgpg-error0 arm64 1.38-2 [74.6 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 libgcrypt20 arm64 1.8.7-2 [493 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.72.0-1 [313 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl4-gnutls-dev arm64 7.72.0-1 [413 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.6-1 [51.5 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate-dev arm64 1.6-1 [44.3 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10.2.1-1 [91.6 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10.2.1-1 [23.9 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10.2.1-1 [794 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10.2.1-1 [1957 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10.2.1-1 [450 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10.2.1-1 [759 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.3.0-19 [889 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main arm64 libgkarrays1 arm64 2.1.0+dfsg-4 [52.6 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 libgkarrays-dev arm64 2.1.0+dfsg-4 [82.9 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 libgzstream0 arm64 1.5+dfsg-5 [6664 B] Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libgzstream-dev arm64 1.5+dfsg-5 [7008 B] Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.4-1+b1 [149 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 libhts3 arm64 1.11-2 [339 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.4-1+b1 [209 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.11-2 [3857 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main arm64 libjellyfish-2.0-2 arm64 2.3.0-8+b1 [60.8 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main arm64 libjellyfish-2.0-dev arm64 2.3.0-8+b1 [136 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.3.0-19 [1664 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 276 MB in 3s (106 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10444 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-2_amd64.deb ... Unpacking bsdextrautils (2.36.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-6_all.deb ... Unpacking perl-modules-5.32 (5.32.0-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.0-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-6) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.0-6_amd64.deb ... Unpacking perl (5.32.0-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libpopt0:amd64. Preparing to unpack .../009-libpopt0_1.18-2_amd64.deb ... Unpacking libpopt0:amd64 (1.18-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../010-libssl1.1_1.1.1i-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1i-1) ... Selecting previously unselected package rsync. Preparing to unpack .../011-rsync_3.2.3-2_amd64.deb ... Unpacking rsync (3.2.3-2) ... Selecting previously unselected package gcc-10-base:arm64. Preparing to unpack .../012-gcc-10-base_10.2.1-1_arm64.deb ... Unpacking gcc-10-base:arm64 (10.2.1-1) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../013-gcc-9-base_9.3.0-19_arm64.deb ... Unpacking gcc-9-base:arm64 (9.3.0-19) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../014-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../015-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../016-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../017-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../018-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../019-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../020-libsigsegv2_2.12-3_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-3) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.69-12_all.deb ... Unpacking autoconf (2.69-12) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.16.3-1_all.deb ... Unpacking automake (1:1.16.3-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../026-binutils-aarch64-linux-gnu_2.35.1-5_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.35.1-5) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../027-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../028-libkrb5support0_1.18.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.18.3-4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../029-libk5crypto3_1.18.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.18.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../030-libkeyutils1_1.6.1-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.1-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../031-libkrb5-3_1.18.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.18.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../032-libgssapi-krb5-2_1.18.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.18.3-4) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../033-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../034-libtirpc3_1.2.6-3_amd64.deb ... Unpacking libtirpc3:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../035-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../036-libtirpc-dev_1.2.6-3_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../037-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../038-libc6-dev_2.31-6_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-6) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../039-libstdc++-10-dev_10.2.1-1_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-1) ... Selecting previously unselected package g++-10. Preparing to unpack .../040-g++-10_10.2.1-1_amd64.deb ... Unpacking g++-10 (10.2.1-1) ... Selecting previously unselected package g++. Preparing to unpack .../041-g++_4%3a10.2.0-1_amd64.deb ... Unpacking g++ (4:10.2.0-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../042-libdpkg-perl_1.20.5_all.deb ... Unpacking libdpkg-perl (1.20.5) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../043-dpkg-dev_1.20.5_all.deb ... Unpacking dpkg-dev (1.20.5) ... Selecting previously unselected package build-essential. Preparing to unpack .../044-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-10-aarch64-linux-gnu-base:amd64. Preparing to unpack .../045-gcc-10-aarch64-linux-gnu-base_10.2.1-1cross1_amd64.deb ... Unpacking gcc-10-aarch64-linux-gnu-base:amd64 (10.2.1-1cross1) ... Selecting previously unselected package cpp-10-aarch64-linux-gnu. Preparing to unpack .../046-cpp-10-aarch64-linux-gnu_10.2.1-1cross1_amd64.deb ... Unpacking cpp-10-aarch64-linux-gnu (10.2.1-1cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../047-cpp-aarch64-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../048-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../049-gcc-10-cross-base_10.2.1-1cross1_all.deb ... Unpacking gcc-10-cross-base (10.2.1-1cross1) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../050-libc6-arm64-cross_2.31-5cross1_all.deb ... Unpacking libc6-arm64-cross (2.31-5cross1) ... Selecting previously unselected package libgcc-s1-arm64-cross. Preparing to unpack .../051-libgcc-s1-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libgcc-s1-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../052-libgomp1-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libgomp1-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libitm1-arm64-cross. Preparing to unpack .../053-libitm1-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libitm1-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libatomic1-arm64-cross. Preparing to unpack .../054-libatomic1-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libatomic1-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libasan6-arm64-cross. Preparing to unpack .../055-libasan6-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libasan6-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package liblsan0-arm64-cross. Preparing to unpack .../056-liblsan0-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking liblsan0-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libtsan0-arm64-cross. Preparing to unpack .../057-libtsan0-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libtsan0-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libstdc++6-arm64-cross. Preparing to unpack .../058-libstdc++6-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libstdc++6-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libubsan1-arm64-cross. Preparing to unpack .../059-libubsan1-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libubsan1-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package libgcc-10-dev-arm64-cross. Preparing to unpack .../060-libgcc-10-dev-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libgcc-10-dev-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package gcc-10-aarch64-linux-gnu. Preparing to unpack .../061-gcc-10-aarch64-linux-gnu_10.2.1-1cross1_amd64.deb ... Unpacking gcc-10-aarch64-linux-gnu (10.2.1-1cross1) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../062-gcc-aarch64-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package linux-libc-dev-arm64-cross. Preparing to unpack .../063-linux-libc-dev-arm64-cross_5.9.11-1cross1_all.deb ... Unpacking linux-libc-dev-arm64-cross (5.9.11-1cross1) ... Selecting previously unselected package libc6-dev-arm64-cross. Preparing to unpack .../064-libc6-dev-arm64-cross_2.31-5cross1_all.deb ... Unpacking libc6-dev-arm64-cross (2.31-5cross1) ... Selecting previously unselected package libstdc++-10-dev-arm64-cross. Preparing to unpack .../065-libstdc++-10-dev-arm64-cross_10.2.1-1cross1_all.deb ... Unpacking libstdc++-10-dev-arm64-cross (10.2.1-1cross1) ... Selecting previously unselected package g++-10-aarch64-linux-gnu. Preparing to unpack .../066-g++-10-aarch64-linux-gnu_10.2.1-1cross1_amd64.deb ... Unpacking g++-10-aarch64-linux-gnu (10.2.1-1cross1) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../067-g++-aarch64-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking g++-aarch64-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../068-libconfig-inifiles-perl_3.000003-1_all.deb ... 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Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.66.4-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1i-1) ... Setting up libtirpc-common (1.2.6-3) ... Setting up perl-modules-5.32 (5.32.0-6) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:arm64 (5.9.15-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up binutils-aarch64-linux-gnu (2.35.1-5) ... Setting up file (1:5.39-3) ... Setting up libkrb5support0:amd64 (1.18.3-4) ... Setting up gcc-10-base:arm64 (10.2.1-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libsigsegv2:amd64 (2.12-3) ... Setting up libc6-arm64-cross (2.31-5cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:amd64 (1.18.3-4) ... Setting up libperl5.32:amd64 (5.32.0-6) ... Setting up gcc-10-cross-base (10.2.1-1cross1) ... Setting up linux-libc-dev-arm64-cross (5.9.11-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libkrb5-3:amd64 (1.18.3-4) ... Setting up libelf1:amd64 (0.182-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libpopt0:amd64 (1.18-2) ... Setting up gcc-9-base:arm64 (9.3.0-19) ... Setting up libgcc-s1-arm64-cross (10.2.1-1cross1) ... Setting up gcc-10-aarch64-linux-gnu-base:amd64 (10.2.1-1cross1) ... Setting up libatomic1-arm64-cross (10.2.1-1cross1) ... Setting up liblsan0-arm64-cross (10.2.1-1cross1) ... Setting up libgomp1-arm64-cross (10.2.1-1cross1) ... Setting up libasan6-arm64-cross (10.2.1-1cross1) ... Setting up libtsan0-arm64-cross (10.2.1-1cross1) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-arm64-cross (2.31-5cross1) ... Setting up libstdc++6-arm64-cross (10.2.1-1cross1) ... Setting up perl (5.32.0-6) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (10.2.1-1cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-12) ... Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-10-aarch64-linux-gnu (10.2.1-1cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up rsync (3.2.3-2) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up automake (1:1.16.3-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:amd64 (1.2.6-3) ... Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-arm64-cross (10.2.1-1cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgcc-10-dev-arm64-cross (10.2.1-1cross1) ... Setting up libdebhelper-perl (13.3) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:10.2.0-1) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up pkg-config (0.29.2-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libstdc++-10-dev-arm64-cross (10.2.1-1cross1) ... Setting up gcc-10-aarch64-linux-gnu (10.2.1-1cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-10-aarch64-linux-gnu (10.2.1-1cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.31-6) ... Setting up gcc-aarch64-linux-gnu (4:10.2.0-1) ... Setting up libstdc++-10-dev:amd64 (10.2.1-1) ... Setting up g++-10 (10.2.1-1) ... Setting up libtool (2.4.6-14) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up g++-aarch64-linux-gnu (4:10.2.0-1) ... Setting up build-essential (12.8) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libcrypt1:arm64 (1:4.4.17-1) ... Setting up libgcc-s1:arm64 (10.2.1-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.31-6) ... Setting up libcrypt-dev:arm64 (1:4.4.17-1) ... Setting up libtasn1-6:arm64 (4.16.0-2) ... Setting up libbz2-1.0:arm64 (1.0.8-4) ... Setting up libdb5.3:arm64 (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:arm64 (10.2.1-1) ... Setting up liblsan0:arm64 (10.2.1-1) ... Setting up libitm1:arm64 (10.2.1-1) ... Setting up libtsan0:arm64 (10.2.1-1) ... Setting up libkeyutils1:arm64 (1.6.1-2) ... Setting up liblzma5:arm64 (5.2.4-1+b1) ... Setting up libgpg-error0:arm64 (1.38-2) ... Setting up libssl1.1:arm64 (1.1.1i-1) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libffi7:arm64 (3.3-5) ... Setting up libnghttp2-14:arm64 (1.42.0-1) ... Setting up libunistring2:arm64 (0.9.10-4) ... Setting up libdeflate0:arm64 (1.6-1) ... Setting up libgcrypt20:arm64 (1.8.7-2) ... Setting up debhelper (13.3) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-2) ... Setting up libidn2-0:arm64 (2.3.0-4) ... Setting up libcom-err2:arm64 (1.45.6-1) ... Setting up libgomp1:arm64 (10.2.1-1) ... Setting up libkrb5support0:arm64 (1.18.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2) ... Setting up libjellyfish-2.0-2:arm64 (2.3.0-8+b1) ... Setting up libasan5:arm64 (9.3.0-19) ... Setting up libnettle8:arm64 (3.6-2) ... Setting up libgmp10:arm64 (2:6.2.1+dfsg-1) ... Setting up libp11-kit0:arm64 (0.23.22-1) ... Setting up libatomic1:arm64 (10.2.1-1) ... Setting up libk5crypto3:arm64 (1.18.3-4) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2) ... Setting up libgzstream0:arm64 (1.5+dfsg-5) ... Setting up liblzma-dev:arm64 (5.2.4-1+b1) ... Setting up libubsan1:arm64 (10.2.1-1) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up libkrb5-3:arm64 (1.18.3-4) ... Setting up libdeflate-dev:arm64 (1.6-1) ... Setting up libpsl5:arm64 (0.21.0-1.1) ... Setting up libhogweed6:arm64 (3.6-2) ... Setting up libgkarrays1:arm64 (2.1.0+dfsg-4) ... Setting up libjellyfish-2.0-dev:arm64 (2.3.0-8+b1) ... Setting up libgkarrays-dev:arm64 (2.1.0+dfsg-4) ... Setting up libgzstream-dev:arm64 (1.5+dfsg-5) ... Setting up libgcc-9-dev:arm64 (9.3.0-19) ... Setting up libgnutls30:arm64 (3.7.0-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:arm64 (1.18.3-4) ... Setting up libtirpc3:arm64 (1.2.6-3) ... Setting up libldap-2.4-2:arm64 (2.4.56+dfsg-1) ... Setting up libcurl3-gnutls:arm64 (7.72.0-1) ... Setting up libcurl4-gnutls-dev:arm64 (7.72.0-1) ... Setting up libtirpc-dev:arm64 (1.2.6-3) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libhts3:arm64 (1.11-2) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.31-6) ... Setting up libstdc++-9-dev:arm64 (9.3.0-19) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libhts-dev:arm64 (1.11-2) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.31-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-5 dpkg-dev_1.20.5 g++-10_10.2.1-1 gcc-10_10.2.1-1 libc6-dev_2.31-6 libstdc++-10-dev_10.2.1-1 libstdc++-10-dev-arm64-cross_10.2.1-1cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.1-1 libstdc++6-arm64-cross_10.2.1-1cross1 linux-libc-dev_5.9.15-1 Package versions: adduser_3.118 apt_2.1.14 autoconf_2.69-12 automake_1:1.16.3-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-5 binutils-aarch64-linux-gnu_2.35.1-5 binutils-common_2.35.1-5 binutils-x86-64-linux-gnu_2.35.1-5 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.1-1 cpp-10-aarch64-linux-gnu_10.2.1-1cross1 cpp-8_8.4.0-5 cpp-aarch64-linux-gnu_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-arm64_12.8 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.1-1 g++-10-aarch64-linux-gnu_10.2.1-1cross1 g++-aarch64-linux-gnu_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.1-1 gcc-10-aarch64-linux-gnu_10.2.1-1cross1 gcc-10-aarch64-linux-gnu-base_10.2.1-1cross1 gcc-10-base_10.2.1-1 gcc-10-cross-base_10.2.1-1cross1 gcc-8-base_8.4.0-5 gcc-9-base_9.3.0-19 gcc-aarch64-linux-gnu_4:10.2.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.14 libarchive-zip-perl_1.68-1 libasan5_9.3.0-19 libasan6_10.2.1-1 libasan6-arm64-cross_10.2.1-1cross1 libatomic1_10.2.1-1 libatomic1-arm64-cross_10.2.1-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbinutils_2.35.1-5 libblkid1_2.36.1-2 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.31-6 libc-dev-bin_2.31-6 libc6_2.31-6 libc6-arm64-cross_2.31-5cross1 libc6-dev_2.31-6 libc6-dev-arm64-cross_2.31-5cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-1 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-5 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libhts3_1.11-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libio-string-perl_1.08-3 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-1 libitm1-arm64-cross_10.2.1-1cross1 libjellyfish-2.0-2_2.3.0-8+b1 libjellyfish-2.0-dev_2.3.0-8+b1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libldap-2.4-2_2.4.56+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-1 liblsan0-arm64-cross_10.2.1-1cross1 liblz4-1_1.9.3-1 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-5 libncursesw6_6.2+20201114-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpopt0_1.18-2 libpsl5_0.21.0-1.1 libquadmath0_10.2.1-1 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libxxhash0_0.8.0-1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.9.15-1 linux-libc-dev-arm64-cross_5.9.11-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.0-6 pkg-config_0.29.2-1 po-debconf_1.0.21 rsync_3.2.3-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1 tzdata_2020d-1 ucf_3.0043 util-linux_2.36.1-2 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: crac Binary: crac Architecture: any Version: 2.5.2+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://crac.gforge.inria.fr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/crac Vcs-Git: https://salsa.debian.org/med-team/crac.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync Package-List: crac deb science optional arch=any Checksums-Sha1: 3a29c15452fb1337fc2d5336a0a00ff72512e21f 658188 crac_2.5.2+dfsg.orig.tar.xz 5c6a73f4886af1b682b17054cb2b14e5eb3eaf8b 13520 crac_2.5.2+dfsg-3.debian.tar.xz Checksums-Sha256: 66198b60f8bebb4d923a1230231949f8c7dc1adce92176b45f041726496c69fd 658188 crac_2.5.2+dfsg.orig.tar.xz 0da9cc2fbd78618bf963cee1d7bfe19234cbce6487877d09f31096e122887860 13520 crac_2.5.2+dfsg-3.debian.tar.xz Files: a58db6dc3a449b7dd4bea567bbb7233a 658188 crac_2.5.2+dfsg.orig.tar.xz 9e20d2ed2461918baeb9720d9f52bd1a 13520 crac_2.5.2+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/bbhERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH64Q/44VvmU2jvVdcS9wfc9cwLHE1IEZPsyqth //TGYsr8wh3lfegq5sJA9CIdMd0ZT8cdSZsz5t8/4mDESn2swh76iL0HMFPGm5Fe d6Ujdym4auHSqpxydeqt8PaDbnp7aGHD3dN38QygyVY7ZxAxF2eYeuKWRtZAES+Z U+qZzpYd0BKhGt2Eg11h+dshn1aw3hCcc9zVhljWAJ1mGboW9UCb1qcwcU7g4wDR kNhynjuoKp/+idzH/uOm+hczZzR/g6sieWQ2o9NO817KDMV9WacHh3JyMINjhpkL QNtdQYgdeC/XbrCvWVj5Qwj/8oEHwHIbr//jA9mhL6tB+bjAElnM7cJjGzN06NRG 0hizYnheWW7qc3MvW5GNlM65dDc/DyEhmpil1HQytJb5TXAdDk9HptstlgaQSd6I 4cZ1CV6+FiAACuuc4aIhXSlrCZ1elkk2p7VrtIHsAWLQ3o0psnufcdz4lIrB4Q9m HaSrbSQgrr5yivPchMyNrmo7IWMW9AHtgq8rGw598H+bsrUPxjG21BEf4QI9C/Qr za/ho6HRcJaVnm30+Azp4lbpStfU5q+YxykWLA+2ePPftWFD2CVF8H88FtOLSNh4 LP/hNRYjVklXXf7zDBTGEr3HyAQqVr9JayJRbPKo6+T/D8IrVe3x+SkeCj1nE4+7 VpkDoyKmnA== =IAF+ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.altHN_5B/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 17 14:41:21 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./crac_2.5.2+dfsg-3.dsc dpkg-source: info: extracting crac in /<> dpkg-source: info: unpacking crac_2.5.2+dfsg.orig.tar.xz dpkg-source: info: unpacking crac_2.5.2+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libgzstream.patch dpkg-source: info: applying use_debian_packaged_libjellyfish.patch dpkg-source: info: applying skip_failed_test_bug-14958.patch dpkg-source: info: applying use_debian_packages_libgtarrays.patch dpkg-source: info: applying reproducible_build.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-8dee2a58-a7a9-4f49-b535-bb313f8b2ff1 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package crac dpkg-buildpackage: info: source version 2.5.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'. libtoolize: copying file 'config/m4/libtool.m4' libtoolize: copying file 'config/m4/ltoptions.m4' libtoolize: copying file 'config/m4/ltsugar.m4' libtoolize: copying file 'config/m4/ltversion.m4' libtoolize: copying file 'config/m4/lt~obsolete.m4' configure.ac:147: installing 'config/compile' configure.ac:139: installing 'config/config.guess' configure.ac:139: installing 'config/config.sub' configure.ac:137: installing 'config/install-sh' configure.ac:137: installing 'config/missing' src/Makefile.am: installing 'config/depcomp' test_f/Makefile.am:109: warning: shell find . -name "*.should_get": non-POSIX variable name test_f/Makefile.am:109: (probably a GNU make extension) test_f/Makefile.am:110: warning: shell find . -name "*.fasta" -o -name "*.fa": non-POSIX variable name test_f/Makefile.am:110: (probably a GNU make extension) test_f/Makefile.am:111: warning: shell find . -name "*.fastq" -o -name "*.fq": non-POSIX variable name test_f/Makefile.am:111: (probably a GNU make extension) parallel-tests: installing 'config/test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gawk... (cached) mawk checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-gcc... none checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking dependency style of aarch64-linux-gnu-g++... none checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ld used by aarch64-linux-gnu-gcc... (cached) /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... (cached) yes checking for dpkg... /usr/bin/dpkg checking for rpmbuild... no checking for sqrt in -lm... yes checking for pthread_join in -lpthread... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether sys/types.h defines makedev... no checking sys/mkdev.h usability... no checking sys/mkdev.h presence... no checking for sys/mkdev.h... no checking sys/sysmacros.h usability... yes checking sys/sysmacros.h presence... yes checking for sys/sysmacros.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for inttypes.h... (cached) yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for memory.h... (cached) yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for inline... inline checking for int64_t... yes checking for off_t... yes checking for size_t... (cached) yes checking for struct stat.st_blksize... yes checking for uint32_t... yes checking for uint8_t... yes checking for ptrdiff_t... no checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for floor... yes checking for gettimeofday... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkfifo... yes checking for pow... yes checking for select... yes checking for sqrt... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for aarch64-linux-gnu-pkg-config... /usr/bin/aarch64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for libProgressBar... yes checking for gzread in -lz... yes checking for hts_hopen in -lhts... yes checking for libGkArrays... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating control config.status: creating crac.spec config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/libReadsInfo/Makefile config.status: creating src/libSSA/Makefile config.status: creating src/libReadsReader/Makefile config.status: creating src/libReadsReader/kseq/Makefile config.status: creating man/Makefile config.status: creating man/crac.1 config.status: creating scripts/crac-client config.status: creating test_f/Makefile config.status: creating test_f/bug/Makefile config.status: creating test_f/causes/Makefile config.status: creating test_f/cigar/Makefile config.status: creating test_f/splices_adjust/Makefile config.status: creating config/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' Making all in libReadsInfo make[3]: Entering directory '/<>/src/libReadsInfo' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-BioTagIndelInfo.o `test -f 'BioTagIndelInfo.cpp' || echo './'`BioTagIndelInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-BioUndeterminedInfo.o `test -f 'BioUndeterminedInfo.cpp' || echo './'`BioUndeterminedInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-cigarTypes.o `test -f 'cigarTypes.cpp' || echo './'`cigarTypes.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-Cigar.o `test -f 'Cigar.cpp' || echo './'`Cigar.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-DuplicationInfo.o `test -f 'DuplicationInfo.cpp' || echo './'`DuplicationInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-genericInfo.o `test -f 'genericInfo.cpp' || echo './'`genericInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-IndelInfo.o `test -f 'IndelInfo.cpp' || echo './'`IndelInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-repetitionInfo.o `test -f 'repetitionInfo.cpp' || echo './'`repetitionInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SeqErrInfo.o `test -f 'SeqErrInfo.cpp' || echo './'`SeqErrInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SNPInfo.o `test -f 'SNPInfo.cpp' || echo './'`SNPInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceInfo.o `test -f 'SpliceInfo.cpp' || echo './'`SpliceInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceInterInfo.o `test -f 'SpliceInterInfo.cpp' || echo './'`SpliceInterInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceIntraInfo.o `test -f 'SpliceIntraInfo.cpp' || echo './'`SpliceIntraInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceNoCoverInfo.o `test -f 'SpliceNoCoverInfo.cpp' || echo './'`SpliceNoCoverInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SplicingInfo.o `test -f 'SplicingInfo.cpp' || echo './'`SplicingInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-samLine.o `test -f 'samLine.cpp' || echo './'`samLine.cpp In file included from /usr/aarch64-linux-gnu/include/string.h:495, from /usr/include/htslib/kstring.h:31, from /usr/include/htslib/hts.h:37, from /usr/include/htslib/sam.h:31, from samLine.h:59, from samLine.cpp:52: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘CharOptionalField::CharOptionalField(const char*, char)’ at samLine.cpp:91:34: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, int)’ at samLine.cpp:117:34: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, uint)’ at samLine.cpp:121:34: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, std::string)’ at samLine.cpp:147:34: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, char*)’ at samLine.cpp:150:34: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘CharOptionalField::CharOptionalField(const char*, char)’ at samLine.cpp:91:34, inlined from ‘void SamLine::addOptionalField(const char*, char)’ at samLine.cpp:476:68: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, int)’ at samLine.cpp:117:34, inlined from ‘void SamLine::addOptionalField(const char*, int)’ at samLine.cpp:485:67: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, uint)’ at samLine.cpp:121:34, inlined from ‘void SamLine::addOptionalField(const char*, uint)’ at samLine.cpp:494:67: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, std::string)’ at samLine.cpp:147:34, inlined from ‘void SamLine::addOptionalField(const char*, const string&)’ at samLine.cpp:503:70: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, std::string)’ at samLine.cpp:147:34, inlined from ‘void SamLine::addOptionalField(const char*, const char*)’ at samLine.cpp:512:70: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-samHeader.o `test -f 'samHeader.cpp' || echo './'`samHeader.cpp samHeader.cpp: In member function ‘bam_hdr_t* SamHeader::writeBamHeader(samFile*)’: samHeader.cpp:160:15: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 160 | sam_hdr_write(out,h); | ~~~~~~~~~~~~~^~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-bamUtils.o `test -f 'bamUtils.cpp' || echo './'`bamUtils.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-tagInfo.o `test -f 'tagInfo.cpp' || echo './'`tagInfo.cpp In file included from ../libReadsReader/readsReader.h:57, from ../Read.h:55, from ../ReadIndex.h:52, from ../Support.h:59, from tagInfo.h:71, from tagInfo.cpp:53: ../libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ../libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ../libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-undeterminedErrorInfo.o `test -f 'undeterminedErrorInfo.cpp' || echo './'`undeterminedErrorInfo.cpp rm -f libReadsInfo.a aarch64-linux-gnu-ar cru libReadsInfo.a libReadsInfo_a-BioTagIndelInfo.o libReadsInfo_a-BioUndeterminedInfo.o libReadsInfo_a-cigarTypes.o libReadsInfo_a-Cigar.o libReadsInfo_a-DuplicationInfo.o libReadsInfo_a-genericInfo.o libReadsInfo_a-IndelInfo.o libReadsInfo_a-repetitionInfo.o libReadsInfo_a-SeqErrInfo.o libReadsInfo_a-SNPInfo.o libReadsInfo_a-SpliceInfo.o libReadsInfo_a-SpliceInterInfo.o libReadsInfo_a-SpliceIntraInfo.o libReadsInfo_a-SpliceNoCoverInfo.o libReadsInfo_a-SplicingInfo.o libReadsInfo_a-samLine.o libReadsInfo_a-samHeader.o libReadsInfo_a-bamUtils.o libReadsInfo_a-tagInfo.o libReadsInfo_a-undeterminedErrorInfo.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libReadsInfo.a make[3]: Leaving directory '/<>/src/libReadsInfo' Making all in libSSA make[3]: Entering directory '/<>/src/libSSA' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cracIndex.o cracIndex.cpp cracIndex.cpp:85:30: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 85 | cerr << "\tCompiled on " <<__DATE__ << endl << endl; | ^~~~~~~~ In file included from ./seqan/basic.h:64, from ./seqan/sequence.h:27, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/basic/basic_holder.h: In function ‘void seqan::setValue(seqan::Holder&, TValue&)’: ./seqan/basic/basic_holder.h:1001:59: warning: typedef ‘THolderType’ locally defined but not used [-Wunused-local-typedefs] 1001 | typedef typename Value >::Type THolderType; | ^~~~~~~~~~~ ./seqan/basic/basic_holder.h: In function ‘typename seqan::Reference >::Type seqan::value(seqan::Holder&)’: ./seqan/basic/basic_holder.h:1027:59: warning: typedef ‘THolderType’ locally defined but not used [-Wunused-local-typedefs] 1027 | typedef typename Value >::Type THolderType; | ^~~~~~~~~~~ ./seqan/basic/basic_holder.h: In function ‘void seqan::assignValue(seqan::Holder&, const TSource&)’: ./seqan/basic/basic_holder.h:1051:59: warning: typedef ‘THostValue’ locally defined but not used [-Wunused-local-typedefs] 1051 | typedef typename Value >::Type THostValue; | ^~~~~~~~~~ In file included from ./seqan/sequence.h:38, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/lexical.h: In function ‘void seqan::compare_(seqan::Lexical&, TLeft&, TRight&)’: ./seqan/sequence/lexical.h:239:38: warning: typedef ‘TLeftValue’ locally defined but not used [-Wunused-local-typedefs] 239 | typedef typename Value::Type TLeftValue; | ^~~~~~~~~~ In file included from ./seqan/sequence.h:51, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSource&, seqan::Tag)’: ./seqan/sequence/string_base.h:811:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 811 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSource&, TSize, seqan::Tag)’: ./seqan/sequence/string_base.h:821:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 821 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSourceValue*, seqan::Tag)’: ./seqan/sequence/string_base.h:834:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 834 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSourceValue*, TSize, seqan::Tag)’: ./seqan/sequence/string_base.h:844:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 844 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, const TSource&, seqan::Tag)’: ./seqan/sequence/string_base.h:1044:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1044 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, const TSource&, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1056:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1056 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, TSourceValue*, seqan::Tag)’: ./seqan/sequence/string_base.h:1070:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1070 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, TSourceValue*, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1082:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1082 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSource&, seqan::Tag)’: ./seqan/sequence/string_base.h:1249:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1249 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSource&, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1263:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1263 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSourceValue*, seqan::Tag)’: ./seqan/sequence/string_base.h:1279:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1279 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSourceValue*, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1293:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1293 | typedef String TTarget; | ^~~~~~~ In file included from ./seqan/sequence.h:53, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_alloc.h: In function ‘typename seqan::Size > >::Type seqan::reserve(seqan::String >&, _TSize, Insist)’: ./seqan/sequence/string_alloc.h:456:63: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 456 | typedef typename Size< String > >::Type TSize; | ^~~~~ In file included from ./seqan/sequence.h:57, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_packed.h: In static member function ‘static typename seqan::Size::Type seqan::_ClearSpace_String_Packed_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type)’: ./seqan/sequence/string_packed.h:594:48: warning: typedef ‘TIterator’ locally defined but not used [-Wunused-local-typedefs] 594 | typedef typename Iterator::Type TIterator; | ^~~~~~~~~ ./seqan/sequence/string_packed.h: In function ‘typename seqan::Size > >::Type seqan::reserve(seqan::String >&, _TSize, Insist)’: ./seqan/sequence/string_packed.h:758:63: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 758 | typedef typename Size< String > >::Type TSize; | ^~~~~ In file included from ./seqan/sequence.h:62, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/sequence_multiple.h: In function ‘void seqan::subset(seqan::StringSet > >&, seqan::StringSet > >&, TIds, TLength)’: ./seqan/sequence/sequence_multiple.h:1647:41: warning: typedef ‘TId’ locally defined but not used [-Wunused-local-typedefs] 1647 | typedef typename Id::Type TId; | ^~~ In file included from ./seqan/index.h:82, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:11, from cracIndex.cpp:67: ./seqan/index/shape_base.h: In function ‘typename seqan::Value > >::Type seqan::hash(seqan::Shape >&, TIter)’: ./seqan/index/shape_base.h:273:62: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 273 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value > >::Type seqan::hash(seqan::Shape >&, TIter)’: ./seqan/index/shape_base.h:309:65: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 309 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h:310:64: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 310 | typedef typename Size< Shape > >::Type TSize; | ^~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hash(seqan::Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:322:56: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 322 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hashUpper(seqan::Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:424:56: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 424 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hash2(seqan::Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:492:56: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 492 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ In file included from ./seqan/index.h:83, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:11, from cracIndex.cpp:67: ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > > >::Type seqan::hash(seqan::Shape > >&, TIter)’: ./seqan/index/shape_gapped.h:370:62: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 370 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > >::Type seqan::hash(seqan::Shape >&, TIter, TSize)’: ./seqan/index/shape_gapped.h:387:75: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 387 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > >::Type seqan::hashUpper(seqan::Shape >&, TIter, TSize)’: ./seqan/index/shape_gapped.h:415:75: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 415 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ In file included from ./seqan/file.h:66, from /<>/src/libSSA/karkkainen_bwt/multikey_qsort.h:6, from /<>/src/libSSA/karkkainen_bwt/diff_sample.h:8, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:13, from cracIndex.cpp:67: ./seqan/file/file_format_fasta_align.h: In function ‘void seqan::read(TFile&, seqan::Align&, FastaAlign)’: ./seqan/file/file_format_fasta_align.h:138:37: warning: typedef ‘TRow’ locally defined but not used [-Wunused-local-typedefs] 138 | typedef typename Row::Type TRow; | ^~~~ ./seqan/file/file_format_fasta_align.h: In function ‘void seqan::_write_impl(TFile&, seqan::Align&, TStringContainer&, FastaAlign)’: ./seqan/file/file_format_fasta_align.h:252:42: warning: typedef ‘TPosition’ locally defined but not used [-Wunused-local-typedefs] 252 | typedef typename Position::Type TPosition; | ^~~~~~~~~ In file included from ./seqan/file.h:69, from /<>/src/libSSA/karkkainen_bwt/multikey_qsort.h:6, from /<>/src/libSSA/karkkainen_bwt/diff_sample.h:8, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:13, from cracIndex.cpp:67: ./seqan/file/file_format_cgviz.h: In function ‘void seqan::_write_impl(TFile&, seqan::Align&, TStringContainer&, CGViz)’: ./seqan/file/file_format_cgviz.h:66:37: warning: typedef ‘TRow’ locally defined but not used [-Wunused-local-typedefs] 66 | typedef typename Row::Type TRow; | ^~~~ In file included from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:13, from cracIndex.cpp:67: /<>/src/libSSA/karkkainen_bwt/diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: /<>/src/libSSA/karkkainen_bwt/diff_sample.h:156:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 156 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ /<>/src/libSSA/karkkainen_bwt/diff_sample.h:156:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 156 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ /<>/src/libSSA/karkkainen_bwt/diff_sample.h:157:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ /<>/src/libSSA/karkkainen_bwt/diff_sample.h:157:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from cracIndex.cpp:67: /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h: In destructor ‘KarkkainenBlockwiseSA::~KarkkainenBlockwiseSA()’: /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:206:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if(_dc != NULL) delete _dc; _dc = NULL; // difference cover sample | ^~ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:206:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if(_dc != NULL) delete _dc; _dc = NULL; // difference cover sample | ^~~ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::buildSamples()’: /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs] 380 | typedef typename Value::Type TAlphabet; | ^~~~~~~~~ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA::nextBlock()’: /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:745:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs] 745 | typedef typename Value::Type TAlphabet; | ^~~~~~~~~ In file included from ./seqan/sequence.h:57, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts, seqan::Packed<> > >’: ./seqan/sequence/string_packed.h:906:72: required from ‘typename seqan::Position > >::Type seqan::position(const seqan::Iter >&) [with TContainer = const seqan::String, seqan::Packed<> >; THostspec = seqan::Alloc; typename seqan::Position > >::Type = long unsigned int]’ ./seqan/sequence/string_packed.h:1237:17: required from ‘typename seqan::Difference > >::Type seqan::operator-(const seqan::Iter >&, const seqan::Iter >&) [with TContainer = const seqan::String, seqan::Packed<> >; THostspec = seqan::Alloc; typename seqan::Difference > >::Type = long int]’ ./seqan/sequence/string_base.h:181:29: required from ‘typename seqan::Size >::Type seqan::length(const seqan::String&) [with TValue = seqan::SimpleType; TSpec = seqan::Packed<>; typename seqan::Size >::Type = long unsigned int]’ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:354:32: required from here ./seqan/sequence/string_packed.h:294:37: warning: comparison between ‘enum seqan::BitsPerValue >::’ and ‘enum seqan::BitsPerValue::’ [-Wenum-compare] 294 | VALUES_PER_WORD = (BITS_PER_VALUE > BITS_PER_HOST_VALUE) ? 1 : (BITS_PER_HOST_VALUE / BITS_PER_VALUE), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./seqan/sequence/string_packed.h:294:37: warning: comparison between types ‘seqan::BitsPerValue >::’ and ‘seqan::BitsPerValue::’ [-Wsign-compare] ./seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts, seqan::Packed<> > >’: ./seqan/sequence/string_packed.h:958:79: required from ‘typename seqan::GetValue > >::Type seqan::getValue(const seqan::Iter >&) [with TContainer = seqan::String, seqan::Packed<> >; THostspec = seqan::Alloc; typename seqan::GetValue > >::Type = seqan::SimpleType]’ ./seqan/basic/basic_proxy.h:242:17: required from ‘typename seqan::GetValue >::Type seqan::getValue(const seqan::Proxy&) [with TSpec = seqan::IteratorProxy, seqan::Packed<> >, seqan::Packed<> > >; typename seqan::GetValue >::Type = seqan::SimpleType]’ ./seqan/basic/basic_proxy.h:272:34: required from ‘typename seqan::Convert >::Type seqan::convertImpl(seqan::Convert, const seqan::Proxy&) [with TTarget = char; T = seqan::Proxy, seqan::Packed<> >, seqan::Packed<> > > >; TSpec = seqan::IteratorProxy, seqan::Packed<> >, seqan::Packed<> > >; typename seqan::Convert >::Type = char]’ ./seqan/basic/basic_converter.h:111:20: required from ‘typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = char; TSource = seqan::Proxy, seqan::Packed<> >, seqan::Packed<> > > >; typename seqan::Convert::Type = char]’ cracIndex.cpp:224:50: required from here ./seqan/sequence/string_packed.h:294:37: warning: comparison between ‘enum seqan::BitsPerValue >::’ and ‘enum seqan::BitsPerValue::’ [-Wenum-compare] ./seqan/sequence/string_packed.h:294:37: warning: comparison between types ‘seqan::BitsPerValue >::’ and ‘seqan::BitsPerValue::’ [-Wsign-compare] In file included from ./seqan/basic.h:101, from ./seqan/sequence.h:27, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/basic/basic_alphabet_trait_basic.h: In instantiation of ‘void seqan::_arrayCopyForward_Pointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]’: ./seqan/basic/basic_alphabet_trait_basic.h:226:27: required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]’ ./seqan/basic/basic_alphabet_trait_basic.h:102:18: required from ‘void seqan::_arrayConstructCopy_Pointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]’ ./seqan/basic/basic_alphabet_trait_basic.h:121:29: required from ‘void seqan::arrayConstructCopy(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]’ ./seqan/sequence/string_alloc.h:421:21: required from ‘typename seqan::Size > >::Type seqan::reserve(seqan::String >&, _TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = void; _TSize = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size > >::Type = long unsigned int]’ ./seqan/sequence/string_base.h:1433:33: required from ‘static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc >; TExpand = const seqan::Tag; typename seqan::Size::Type = long unsigned int]’ ./seqan/sequence/string_base.h:1459:52: required from ‘typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc; TSize = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]’ ./seqan/sequence/sequence_interface.h:1360:15: required from ‘typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc >; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]’ ./seqan/file/file_format_fasta.h:269:8: required from ‘void seqan::read(TFile&, TData&, TSize, Fasta) [with TFile = std::basic_ifstream; TData = seqan::String, seqan::Alloc >; TSize = long unsigned int; seqan::Fasta = const seqan::Tag]’ ./seqan/file/file_format_fasta.h:309:6: required from ‘void seqan::read(TFile&, TData&, Fasta) [with TFile = std::basic_ifstream; TData = seqan::String, seqan::Alloc >; seqan::Fasta = const seqan::Tag]’ cracIndex.cpp:142:40: required from here ./seqan/basic/basic_alphabet_trait_basic.h:207:9: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘struct seqan::SimpleType’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 207 | memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./seqan/basic.h:106, from ./seqan/sequence.h:27, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/basic/basic_alphabet_simple.h:57:8: note: ‘struct seqan::SimpleType’ declared here 57 | struct SimpleType | ^~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bitarray.o bitarray.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bitrankw32int.o bitrankw32int.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o chrPosition.o chrPosition.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HuffAlphabetRank.o HuffAlphabetRank.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Huffman_Codes.o Huffman_Codes.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o locateOnGenome.o locateOnGenome.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o locateTags.o locateTags.cpp In file included from /usr/include/libGkArrays/readsReader.h:109, from locateTags.h:60, from locateTags.cpp:53: /usr/include/libGkArrays/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ /usr/include/libGkArrays/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ /usr/include/libGkArrays/readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SSA.o SSA.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.o utils.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GenomeInfo.o GenomeInfo.cpp rm -f libSSA.a aarch64-linux-gnu-ar cru libSSA.a bitarray.o bitrankw32int.o chrPosition.o HuffAlphabetRank.o Huffman_Codes.o locateOnGenome.o locateTags.o SSA.o utils.o GenomeInfo.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libSSA.a /bin/bash ../../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -lm -lpthread -lSSA -L/<>/src/libSSA/ -Wl,-z,relro -Wl,-z,now -o crac-index cracIndex.o libSSA.a -lhts -lz -lpthread -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o crac-index cracIndex.o -lSSA -L/<>/src/libSSA/ libSSA.a -lhts -lz -lpthread -lm make[3]: Leaving directory '/<>/src/libSSA' Making all in libReadsReader make[3]: Entering directory '/<>/src/libReadsReader' Making all in kseq make[4]: Entering directory '/<>/src/libReadsReader/kseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/src/libReadsReader/kseq' make[4]: Entering directory '/<>/src/libReadsReader' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsReader_a-readsReader.o `test -f 'readsReader.cpp' || echo './'`readsReader.cpp rm -f libReadsReader.a aarch64-linux-gnu-ar cru libReadsReader.a libReadsReader_a-readsReader.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libReadsReader.a make[4]: Leaving directory '/<>/src/libReadsReader' make[3]: Leaving directory '/<>/src/libReadsReader' make[3]: Entering directory '/<>/src' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Classifier.o Classifier.cpp In file included from ./libReadsReader/readsReader.h:57, from ./Read.h:55, from ./ReadIndex.h:52, from ./Classifier.h:56, from Classifier.cpp:52: ./libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ Classifier.cpp: In member function ‘virtual void SingleReadClassifier::classify()’: Classifier.cpp:203:33: warning: ‘bioundetermined_type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 203 | taginfo->addBioUndetermined(suppoBreak->getLocationStartBreak(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | suppoBreak->getPositionStartBreak(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 | bioundetermined_type, | ~~~~~~~~~~~~~~~~~~~~~ 206 | message.c_str()); | ~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o classifyTags.o classifyTags.cpp classifyTags.cpp:421:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 421 | headerTemplate << "#Created on " <<__DATE__ << endl << "#" << endl; | ^~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from classifyTags.cpp:52: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GkReadIndex.o GkReadIndex.cpp In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.hxx:119:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 119 | LargeBinVect(const CountWordSize length = 0, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:120:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:121:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:127:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 127 | inline LargeBinVect &operator=(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.hxx:155:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 155 | inline LargeBinVect operator()(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:158:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 158 | inline unsigned long int GetValue(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:161:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 161 | inline bool operator[](const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 177 | inline bool GetBit(const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:179:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 179 | inline LargeBinVect &SetBit(const CountWordSize i, const bool value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:182:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 182 | inline LargeBinVect &SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:191:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 191 | inline LargeBinVect &Resize(const CountWordSize length, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:194:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | inline LargeBinVect &Append(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:197:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 197 | inline LargeBinVect &Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:200:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 200 | inline LargeBinVect &operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:203:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 203 | inline LargeBinVect &operator++() throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:205:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 205 | inline LargeBinVect operator++(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:208:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 208 | inline LargeBinVect &operator--() throw (BinVectOverflow); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:210:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 210 | inline LargeBinVect operator--(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:214:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 214 | inline LargeBinVect Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.cxx:121:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | unsigned char *MyCalloc(const CountWordSize w, const int value = -1) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:136:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 136 | LargeBinVect::LargeBinVect(const CountWordSize length, const bool value) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:147:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 147 | LargeBinVect::LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:167:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 167 | LargeBinVect::LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:184:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 184 | LargeBinVect &LargeBinVect::operator=(const LargeBinVect &v) throw (std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.cxx:339:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 339 | LargeBinVect LargeBinVect::operator()(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:363:110: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 363 | unsigned long int LargeBinVect::GetValue(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:397:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 397 | bool LargeBinVect::operator[](const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:478:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 478 | bool LargeBinVect::GetBit(const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:493:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 493 | LargeBinVect &LargeBinVect::SetBit(const CountWordSize i, const bool value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:513:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 513 | LargeBinVect &LargeBinVect::SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:619:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 619 | LargeBinVect &LargeBinVect::Resize(const CountWordSize length, const bool value) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:653:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 653 | LargeBinVect &LargeBinVect::Append(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:661:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 661 | LargeBinVect &LargeBinVect::Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:673:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 673 | LargeBinVect &LargeBinVect::operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:711:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 711 | LargeBinVect &LargeBinVect::operator++() throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:727:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 727 | LargeBinVect LargeBinVect::operator++(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:734:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 734 | LargeBinVect &LargeBinVect::operator--() throw (BinVectOverflow) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:750:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 750 | LargeBinVect LargeBinVect::operator--(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:757:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 757 | LargeBinVect LargeBinVect::Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/solArray.h:160:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 160 | SolArray(void *ptr, array_type t, uintSA nbElements) throw (invalid_argument); | ^~~~~ /usr/include/libGkArrays/solArray.h:202:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 202 | void realloc(uintSA nbElements) throw (logic_error); | ^~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from GkReadIndex.h:59, from GkReadIndex.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o JellyReadIndex.o JellyReadIndex.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from JellyReadIndex.h:59, from JellyReadIndex.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o crac.o crac.cpp crac.cpp:213:34: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 213 | printf("\tCompiled on %s.\n\n",__DATE__); | ^~~~~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.hxx:119:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 119 | LargeBinVect(const CountWordSize length = 0, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:120:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:121:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:127:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 127 | inline LargeBinVect &operator=(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.hxx:155:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 155 | inline LargeBinVect operator()(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:158:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 158 | inline unsigned long int GetValue(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:161:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 161 | inline bool operator[](const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 177 | inline bool GetBit(const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:179:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 179 | inline LargeBinVect &SetBit(const CountWordSize i, const bool value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:182:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 182 | inline LargeBinVect &SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:191:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 191 | inline LargeBinVect &Resize(const CountWordSize length, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:194:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | inline LargeBinVect &Append(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:197:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 197 | inline LargeBinVect &Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:200:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 200 | inline LargeBinVect &operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:203:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 203 | inline LargeBinVect &operator++() throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:205:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 205 | inline LargeBinVect operator++(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:208:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 208 | inline LargeBinVect &operator--() throw (BinVectOverflow); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:210:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 210 | inline LargeBinVect operator--(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:214:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 214 | inline LargeBinVect Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.cxx:121:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | unsigned char *MyCalloc(const CountWordSize w, const int value = -1) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:136:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 136 | LargeBinVect::LargeBinVect(const CountWordSize length, const bool value) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:147:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 147 | LargeBinVect::LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:167:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 167 | LargeBinVect::LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:184:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 184 | LargeBinVect &LargeBinVect::operator=(const LargeBinVect &v) throw (std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.cxx:339:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 339 | LargeBinVect LargeBinVect::operator()(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:363:110: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 363 | unsigned long int LargeBinVect::GetValue(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:397:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 397 | bool LargeBinVect::operator[](const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:478:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 478 | bool LargeBinVect::GetBit(const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:493:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 493 | LargeBinVect &LargeBinVect::SetBit(const CountWordSize i, const bool value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:513:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 513 | LargeBinVect &LargeBinVect::SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:619:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 619 | LargeBinVect &LargeBinVect::Resize(const CountWordSize length, const bool value) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:653:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 653 | LargeBinVect &LargeBinVect::Append(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:661:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 661 | LargeBinVect &LargeBinVect::Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:673:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 673 | LargeBinVect &LargeBinVect::operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:711:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 711 | LargeBinVect &LargeBinVect::operator++() throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:727:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 727 | LargeBinVect LargeBinVect::operator++(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:734:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 734 | LargeBinVect &LargeBinVect::operator--() throw (BinVectOverflow) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:750:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 750 | LargeBinVect LargeBinVect::operator--(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:757:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 757 | LargeBinVect LargeBinVect::Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/solArray.h:160:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 160 | SolArray(void *ptr, array_type t, uintSA nbElements) throw (invalid_argument); | ^~~~~ /usr/include/libGkArrays/solArray.h:202:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 202 | void realloc(uintSA nbElements) throw (logic_error); | ^~~~~ crac.cpp: In function ‘int main(int, char**)’: crac.cpp:1009:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 1009 | } catch (bad_alloc e) { | ^ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from crac.cpp:66: libReadsReader/readsReader.h: At global scope: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Parameters.o Parameters.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SupportBreak.o SupportBreak.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from Support.h:59, from SupportBreak.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BreakList.o BreakList.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o CandidatBreak.o CandidatBreak.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Support.o Support.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from Support.h:59, from Support.cpp:57: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o locateServer.o locateServer.cpp locateServer.cpp: In function ‘void* launchSubServer(void*)’: locateServer.cpp:464:8: warning: unused variable ‘threshold’ [-Wunused-variable] 464 | uint threshold = indexTags->getFactorLength(); | ^~~~~~~~~ locateServer.cpp:466:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable] 466 | char *dontCare, *variable, *tag_length, *factor; | ^~~~~~~~ locateServer.cpp: In function ‘void locateServer(ClassifyTags*, const char*, const char*)’: locateServer.cpp:717:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable] 717 | char *dontCare; | ^~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from locateServer.cpp:59: libReadsReader/readsReader.h: At global scope: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.o utils.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Bitset.o Bitset.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -lGkArrays -ljellyfish-2.0 -lm -lpthread -lhts -lSSA -lReadsInfo -lReadsReader -lgzstream -L/<>/src/libSSA -L/<>/src/libReadsInfo -L/<>/src/libReadsReader -ljellyfish-2.0 -L/usr/lib/aarch64-linux-gnu -lGkArrays -L/usr/lib/aarch64-linux-gnu -lProgressBar -Wl,-z,relro -Wl,-z,now -o crac Classifier.o classifyTags.o GkReadIndex.o JellyReadIndex.o crac.o Parameters.o SupportBreak.o BreakList.o CandidatBreak.o Support.o locateServer.o utils.o Bitset.o /<>/src/libSSA/libSSA.a /<>/src/libReadsInfo/libReadsInfo.a /<>/src/libReadsReader/libReadsReader.a -lhts -lz -lpthread -lm libtool: link: aarch64-linux-gnu-g++ -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o crac Classifier.o classifyTags.o GkReadIndex.o JellyReadIndex.o crac.o Parameters.o SupportBreak.o BreakList.o CandidatBreak.o Support.o locateServer.o utils.o Bitset.o -lSSA -lReadsInfo -lReadsReader -lgzstream -L/<>/src/libSSA -L/<>/src/libReadsInfo -L/<>/src/libReadsReader /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -L/usr/lib/aarch64-linux-gnu -lGkArrays -lProgressBar /<>/src/libSSA/libSSA.a /<>/src/libReadsInfo/libReadsInfo.a /<>/src/libReadsReader/libReadsReader.a -lhts -lz -lpthread -lm ln -s -f /<>/src/libSSA/crac-index crac-index make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in man make[2]: Entering directory '/<>/man' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/man' Making all in scripts make[2]: Entering directory '/<>/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/scripts' Making all in test_f make[2]: Entering directory '/<>/test_f' Making all in causes make[3]: Entering directory '/<>/test_f/causes' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/causes' Making all in bug make[3]: Entering directory '/<>/test_f/bug' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/bug' Making all in cigar make[3]: Entering directory '/<>/test_f/cigar' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/cigar' Making all in splices_adjust make[3]: Entering directory '/<>/test_f/splices_adjust' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/splices_adjust' make[3]: Entering directory '/<>/test_f' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>/test_f' make[2]: Leaving directory '/<>/test_f' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/crac-2.5.2\+dfsg/debian/crac AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' Making install in libReadsInfo make[3]: Entering directory '/<>/src/libReadsInfo' make[4]: Entering directory '/<>/src/libReadsInfo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/libReadsInfo' make[3]: Leaving directory '/<>/src/libReadsInfo' Making install in libSSA make[3]: Entering directory '/<>/src/libSSA' make[4]: Entering directory '/<>/src/libSSA' /bin/mkdir -p '/<>/debian/crac/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c crac-index '/<>/debian/crac/usr/bin' libtool: install: /usr/bin/install -c crac-index /<>/debian/crac/usr/bin/crac-index make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/libSSA' make[3]: Leaving directory '/<>/src/libSSA' Making install in libReadsReader make[3]: Entering directory '/<>/src/libReadsReader' Making install in kseq make[4]: Entering directory '/<>/src/libReadsReader/kseq' make[5]: Entering directory '/<>/src/libReadsReader/kseq' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/crac/usr/include/crac-2.5.2/kseq' /usr/bin/install -c -m 644 kseq.h '/<>/debian/crac/usr/include/crac-2.5.2/kseq' make[5]: Leaving directory '/<>/src/libReadsReader/kseq' make[4]: Leaving directory '/<>/src/libReadsReader/kseq' make[4]: Entering directory '/<>/src/libReadsReader' make[5]: Entering directory '/<>/src/libReadsReader' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/libReadsReader' make[4]: Leaving directory '/<>/src/libReadsReader' make[3]: Leaving directory '/<>/src/libReadsReader' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/crac/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c crac '/<>/debian/crac/usr/bin' libtool: install: /usr/bin/install -c crac /<>/debian/crac/usr/bin/crac make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/crac/usr/share/man/man1' /usr/bin/install -c -m 644 crac.1 '/<>/debian/crac/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' Making install in scripts make[2]: Entering directory '/<>/scripts' make[3]: Entering directory '/<>/scripts' /bin/mkdir -p '/<>/debian/crac/usr/bin' /usr/bin/install -c crac-client '/<>/debian/crac/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/scripts' make[2]: Leaving directory '/<>/scripts' Making install in test_f make[2]: Entering directory '/<>/test_f' Making install in causes make[3]: Entering directory '/<>/test_f/causes' make[4]: Entering directory '/<>/test_f/causes' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/causes' make[3]: Leaving directory '/<>/test_f/causes' Making install in bug make[3]: Entering directory '/<>/test_f/bug' make[4]: Entering directory '/<>/test_f/bug' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/bug' make[3]: Leaving directory '/<>/test_f/bug' Making install in cigar make[3]: Entering directory '/<>/test_f/cigar' make[4]: Entering directory '/<>/test_f/cigar' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/cigar' make[3]: Leaving directory '/<>/test_f/cigar' Making install in splices_adjust make[3]: Entering directory '/<>/test_f/splices_adjust' make[4]: Entering directory '/<>/test_f/splices_adjust' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/splices_adjust' make[3]: Leaving directory '/<>/test_f/splices_adjust' make[3]: Entering directory '/<>/test_f' make[4]: Entering directory '/<>/test_f' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f' make[3]: Leaving directory '/<>/test_f' make[2]: Leaving directory '/<>/test_f' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' mkdir debian/crac/usr/share/doc/crac/examples rsync -a --exclude=Makefile* test_f debian/crac/usr/share/doc/crac/examples sed -i 's+${abs_top_builddir:-\.\./\.\.}/src/crac+crac+' `grep -wRl crac debian/crac/usr/share/doc/crac/examples/*` sed -i 's+$abs_top_builddir/src/crac-index+crac-index+' `grep -wRl crac-index debian/crac/usr/share/doc/crac/examples/*` make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'crac' in '../crac_2.5.2+dfsg-3_arm64.deb'. dpkg-deb: building package 'crac-dbgsym' in '../crac-dbgsym_2.5.2+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../crac_2.5.2+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-19T10:55:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ crac_2.5.2+dfsg-3_arm64.changes: -------------------------------- Format: 1.8 Date: Thu, 17 Dec 2020 15:38:12 +0100 Source: crac Binary: crac crac-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.5.2+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: crac - integrated RNA-Seq read analysis Changes: crac (2.5.2+dfsg-3) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * watch file standard 4 (routine-update) Checksums-Sha1: da7f915904ce547315747ae9d94e24df7ccb9bf9 1757168 crac-dbgsym_2.5.2+dfsg-3_arm64.deb c35232ad397e3e04963c3195a6b23accfcb03083 5844 crac_2.5.2+dfsg-3_arm64.buildinfo b19b032d62a9b4486ba21b426b0652128a31ecf1 442700 crac_2.5.2+dfsg-3_arm64.deb Checksums-Sha256: 2109358a314321c39cbf57faac7270440fd412b8e991f5a46a6b347e997af159 1757168 crac-dbgsym_2.5.2+dfsg-3_arm64.deb 07fb7c1ef680bf3eb88b2c86ccc4a7b63521ce9dfa38c3f2c5c365c5f544518c 5844 crac_2.5.2+dfsg-3_arm64.buildinfo 463492f9998664c1115ecbe0019f69c60980e2937ce7fc868d87d4b5eebb0489 442700 crac_2.5.2+dfsg-3_arm64.deb Files: c7abd3b158d35d625f2979d5e59fd558 1757168 debug optional crac-dbgsym_2.5.2+dfsg-3_arm64.deb 7c1446500d1f9d9cada47b9ade245cfc 5844 science optional crac_2.5.2+dfsg-3_arm64.buildinfo 0bfa44062427e084a1e440085e0b5d38 442700 science optional crac_2.5.2+dfsg-3_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: crac Binary: crac crac-dbgsym Architecture: arm64 Version: 2.5.2+dfsg-3 Checksums-Md5: c7abd3b158d35d625f2979d5e59fd558 1757168 crac-dbgsym_2.5.2+dfsg-3_arm64.deb 0bfa44062427e084a1e440085e0b5d38 442700 crac_2.5.2+dfsg-3_arm64.deb Checksums-Sha1: da7f915904ce547315747ae9d94e24df7ccb9bf9 1757168 crac-dbgsym_2.5.2+dfsg-3_arm64.deb b19b032d62a9b4486ba21b426b0652128a31ecf1 442700 crac_2.5.2+dfsg-3_arm64.deb Checksums-Sha256: 2109358a314321c39cbf57faac7270440fd412b8e991f5a46a6b347e997af159 1757168 crac-dbgsym_2.5.2+dfsg-3_arm64.deb 463492f9998664c1115ecbe0019f69c60980e2937ce7fc868d87d4b5eebb0489 442700 crac_2.5.2+dfsg-3_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 19 Dec 2020 10:55:29 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-12), automake (= 1:1.16.3-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1-1), binutils (= 2.35.1-5), binutils-common (= 2.35.1-5), binutils-x86-64-linux-gnu (= 2.35.1-5), bsdextrautils (= 2.36.1-2), bsdutils (= 1:2.36.1-2), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.1-1), dash (= 0.5.11+git20200708+dd9ef66-5), debconf (= 1.5.74), debhelper (= 13.3), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.1-1), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.1-1), gcc-10-base (= 10.2.1-1), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-1), libatomic1 (= 10.2.1-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3.1), libaudit1 (= 1:2.8.5-3.1+b1), libbinutils (= 2.35.1-5), libblkid1 (= 2.36.1-2), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-6), libc-dev-bin (= 2.31-6), libc6 (= 2.31-6), libc6-dev (= 2.31-6), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-1), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-5), libctf0 (= 2.35.1-5), libcurl3-gnutls (= 7.72.0-1), libcurl4-gnutls-dev (= 7.72.0-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.255), libdebhelper-perl (= 13.3), libdeflate-dev (= 1.6-1), libdeflate0 (= 1.6-1), libdpkg-perl (= 1.20.5), libelf1 (= 0.182-1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.1-1), libgcc-s1 (= 10.2.1-1), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgkarrays-dev (= 2.1.0+dfsg-4), libgkarrays1 (= 2.1.0+dfsg-4), libglib2.0-0 (= 2.66.4-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.0-3), libgomp1 (= 10.2.1-1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libgzstream-dev (= 1.5+dfsg-5), libgzstream0 (= 1.5+dfsg-5), libhogweed6 (= 3.6-2), libhts-dev (= 1.11-2), libhts3 (= 1.11-2), libicu67 (= 67.1-5), libidn2-0 (= 2.3.0-4), libisl23 (= 0.23-1), libitm1 (= 10.2.1-1), libjellyfish-2.0-2 (= 2.3.0-8+b1), libjellyfish-2.0-dev (= 2.3.0-8+b1), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libldap-2.4-2 (= 2.4.56+dfsg-1), liblsan0 (= 10.2.1-1), liblz4-1 (= 1.9.3-1), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.42.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-6), libpipeline1 (= 1.5.3-1), libpopt0 (= 1.18-2), libpsl5 (= 0.21.0-1.1), libquadmath0 (= 10.2.1-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.5.0-3+b1), libselinux1 (= 3.1-2+b2), libsigsegv2 (= 2.12-3), libsmartcols1 (= 2.36.1-2), libssh2-1 (= 1.9.0-2), libssl1.1 (= 1.1.1i-1), libstdc++-10-dev (= 10.2.1-1), libstdc++6 (= 10.2.1-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.1-4), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.1-1), libubsan1 (= 10.2.1-1), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-4), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-2), libxml2 (= 2.9.10+dfsg-6.3+b1), libxxhash0 (= 0.8.0-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.9.15-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), patch (= 2.7.6-6), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21), rsync (= 3.2.3-2), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1608215892" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ crac-dbgsym_2.5.2+dfsg-3_arm64.deb ---------------------------------- new Debian package, version 2.0. size 1757168 bytes: control archive=640 bytes. 410 bytes, 12 lines control 294 bytes, 3 lines md5sums Package: crac-dbgsym Source: crac Version: 2.5.2+dfsg-3 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1857 Depends: crac (= 2.5.2+dfsg-3) Section: debug Priority: optional Description: debug symbols for crac Build-Ids: 267e69bbae26c7e3d09a20d2ab667e1c3f904da0 c6e0f6ebceb945751766654dcaeec08c14a18c0c drwxr-xr-x root/root 0 2020-12-17 14:38 ./ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/lib/debug/.build-id/26/ -rw-r--r-- root/root 1333608 2020-12-17 14:38 ./usr/lib/debug/.build-id/26/7e69bbae26c7e3d09a20d2ab667e1c3f904da0.debug drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/lib/debug/.build-id/c6/ -rw-r--r-- root/root 515816 2020-12-17 14:38 ./usr/lib/debug/.build-id/c6/e0f6ebceb945751766654dcaeec08c14a18c0c.debug drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 37400 2020-12-17 14:38 ./usr/lib/debug/.dwz/aarch64-linux-gnu/crac.debug drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-12-17 14:38 ./usr/share/doc/crac-dbgsym -> crac crac_2.5.2+dfsg-3_arm64.deb --------------------------- new Debian package, version 2.0. size 442700 bytes: control archive=3892 bytes. 1496 bytes, 25 lines control 10511 bytes, 118 lines md5sums Package: crac Version: 2.5.2+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 2207 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgkarrays1 (>= 2.1.0+dfsg), libgzstream0 (>= 1.5+dfsg), libhts3 (>= 1.10), libjellyfish-2.0-2 (>= 2.3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://crac.gforge.inria.fr/ Description: integrated RNA-Seq read analysis CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis. drwxr-xr-x root/root 0 2020-12-17 14:38 ./ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/bin/ -rwxr-xr-x root/root 414624 2020-12-17 14:38 ./usr/bin/crac -rwxr-xr-x root/root 11120 2020-12-17 14:38 ./usr/bin/crac-client -rwxr-xr-x root/root 156616 2020-12-17 14:38 ./usr/bin/crac-index drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/include/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/include/crac-2.5.2/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/include/crac-2.5.2/kseq/ -rw-r--r-- root/root 12765 2020-12-17 14:38 ./usr/include/crac-2.5.2/kseq/kseq.h drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/doc/crac/ -rw-r--r-- root/root 2004 2015-07-13 14:37 ./usr/share/doc/crac/README.gz -rw-r--r-- root/root 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-rw-r--r-- root/root 456 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/bug/bug-2015-12-08.should_get -rw-r--r-- root/root 59 2014-10-29 10:03 ./usr/share/doc/crac/examples/test_f/bug/bug-case-sensitive-genome.fa -rw-r--r-- root/root 531 2014-10-29 10:21 ./usr/share/doc/crac/examples/test_f/bug/bug-case-sensitive-read.fa -rw-r--r-- root/root 964 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/bug/bug-case-sensitive.should_get -rw-r--r-- root/root 71 2015-12-14 16:20 ./usr/share/doc/crac/examples/test_f/bug/test.fa -rw-r--r-- root/root 180 2015-12-14 16:21 ./usr/share/doc/crac/examples/test_f/bug/test0.fa -rw-r--r-- root/root 114534 2015-01-28 15:17 ./usr/share/doc/crac/examples/test_f/bug/tmp-genome.fa -rw-r--r-- root/root 620 2015-01-28 15:17 ./usr/share/doc/crac/examples/test_f/bug/tmp-reads.fa drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/causes/ -rw-r--r-- root/root 1100 2015-11-24 08:24 ./usr/share/doc/crac/examples/test_f/causes/biotag.fa -rw-r--r-- root/root 469 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/causes/biotag.fa.should_get -rw-r--r-- root/root 5096 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/causes/genome.fa -rw-r--r-- root/root 4330 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/causes/snp.fa -rw-r--r-- root/root 3502 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/causes/snp.fa.should_get drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/cigar/ -rw-r--r-- root/root 1577 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/cigar/consistency.should_get -rw-r--r-- root/root 345 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/cigar/consistency2.should_get -rw-r--r-- root/root 2808 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/cigar/consistency3.should_get -rw-r--r-- root/root 2349 2015-01-30 17:20 ./usr/share/doc/crac/examples/test_f/cigar/genome.fasta -rw-r--r-- root/root 1180751 2015-07-04 15:01 ./usr/share/doc/crac/examples/test_f/cigar/genome2.fasta -rw-r--r-- root/root 320 2015-07-04 14:49 ./usr/share/doc/crac/examples/test_f/cigar/read_c4.fasta -rw-r--r-- root/root 2299 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/cigar/reads.fasta -rw-r--r-- root/root 128 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/cigar/reads_k18.fasta -rw-r--r-- root/root 746 2015-01-30 17:20 ./usr/share/doc/crac/examples/test_f/cigar/reads_sam1.fasta -rw-r--r-- root/root 613 2015-01-30 17:20 ./usr/share/doc/crac/examples/test_f/cigar/reads_sam2.fasta -rwxr-xr-x root/root 351 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/index_genomes.sh -rwxr-xr-x root/root 157 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/launch_sg.sh -rwxr-xr-x root/root 7038 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/should-get.sh drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/splices_adjust/ -rw-r--r-- root/root 269 2014-10-30 14:18 ./usr/share/doc/crac/examples/test_f/splices_adjust/genome.fa -rw-r--r-- root/root 302 2014-10-30 14:18 ./usr/share/doc/crac/examples/test_f/splices_adjust/splice.fa -rw-r--r-- root/root 593 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/splices_adjust/splice.should_get -rwxr-xr-x root/root 1277 2020-12-17 14:38 ./usr/share/doc/crac/examples/test_f/test_index.sh -rw-r--r-- root/root 117493 2015-01-28 15:21 ./usr/share/doc/crac/examples/test_f/tmp-genome.fa -rw-r--r-- root/root 1536 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/toy.fasta -rw-r--r-- root/root 2754 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/toy.fastq -rw-r--r-- root/root 1071 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/toy1.fastq -rw-r--r-- root/root 1071 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/toy2.fastq -rw-r--r-- root/root 85 2014-10-20 21:35 ./usr/share/doc/crac/examples/test_f/valgrind.supp -rw-r--r-- root/root 366 2020-12-17 14:38 ./usr/share/doc/crac/run-unit-test drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-17 14:38 ./usr/share/man/man1/ -rw-r--r-- root/root 6450 2020-12-17 14:38 ./usr/share/man/man1/crac.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [586 B] Get:5 copy:/<>/apt_archive ./ Packages [674 B] Fetched 2223 B in 0s (87.3 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 7570 kB of archives. After this operation, 21.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.0-1 [796 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b4 [71.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 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unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7570 kB in 0s (30.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21734 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.34.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.0-1) ... Selecting previously unselected package gpg. 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Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-6) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 50380 Build-Time: 76 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 46 Job: crac_2.5.2+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: crac Package-Time: 140 Source-Version: 2.5.2+dfsg-3 Space: 50380 Status: successful Version: 2.5.2+dfsg-3 -------------------------------------------------------------------------------- Finished at 2020-12-19T10:55:29Z Build needed 00:02:20, 50380k disk space