sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | crac 2.5.2+dfsg-6 (arm64) Wed, 27 Mar 2024 09:54:31 +0000 | +==============================================================================+ Package: crac Version: 2.5.2+dfsg-6 Source Version: 2.5.2+dfsg-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-99e71335-c1e0-4de3-aaf5-cfc6263ed865' with '<>' I: NOTICE: Log filtering will replace 'build/crac-3W8f2y/resolver-s8ma7O' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-03-27-0805.17-F-2024-03-27-0205.56.pdiff [20.0 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-03-27-0805.17-F-2024-03-27-0205.56.pdiff [20.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-03-27-0805.17-F-2024-03-27-0205.56.pdiff [22.9 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9823 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-03-27-0805.17-F-2024-03-27-0205.56.pdiff [22.9 kB] Fetched 10.2 MB in 3s (3470 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'crac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/crac.git Please use: git clone https://salsa.debian.org/med-team/crac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 675 kB of source archives. Get:1 http://localhost:3142/debian sid/main crac 2.5.2+dfsg-6 (dsc) [2080 B] Get:2 http://localhost:3142/debian sid/main crac 2.5.2+dfsg-6 (tar) [658 kB] Get:3 http://localhost:3142/debian sid/main crac 2.5.2+dfsg-6 (diff) [15.2 kB] Fetched 675 kB in 0s (12.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/crac-3W8f2y/crac-2.5.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/crac-3W8f2y' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [837 B] Get:5 copy:/<>/apt_archive ./ Packages [880 B] Fetched 2326 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: architecture-properties:arm64 autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2t64:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl3t64-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3t64:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libelf1t64 libfakeroot libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgkarrays-dev:arm64 libgkarrays1t64:arm64 libgmp10:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgzstream-dev:arm64 libgzstream0:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjellyfish-2.0-2:arm64 libjellyfish-2.0-dev:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64 libnettle8t64:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpkgconf3 libpopt0 libpsl5t64:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libssh2-1t64:arm64 libssl3t64:arm64 libstdc++-13-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtasn1-6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 m4 man-db pkg-config:arm64 pkgconf:arm64 pkgconf-bin po-debconf rsync sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 libcurl4-doc:arm64 libgnutls28-dev:arm64 libidn-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 libstdc++-13-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl openssh-client openssh-server python3 python3-braceexpand Recommended packages: curl | wget | lynx ca-certificates:arm64 libarchive-cpio-perl krb5-locales:arm64 libldap-common:arm64 publicsuffix:arm64 libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: architecture-properties:arm64 autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2t64:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl3t64-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3t64:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libelf1t64 libfakeroot libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgkarrays-dev:arm64 libgkarrays1t64:arm64 libgmp10:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgzstream-dev:arm64 libgzstream0:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjellyfish-2.0-2:arm64 libjellyfish-2.0-dev:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64 libnettle8t64:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpkgconf3 libpopt0 libpsl5t64:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libssh2-1t64:arm64 libssl3t64:arm64 libstdc++-13-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtasn1-6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 m4 man-db pkg-config:arm64 pkgconf:arm64 pkgconf-bin po-debconf rsync sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. Need to get 110 MB of archives. After this operation, 447 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [980 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b2 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpopt0 amd64 1.19+dfsg-1+b1 [43.6 kB] Get:4 http://localhost:3142/debian sid/main amd64 rsync amd64 3.2.7-1+b2 [417 kB] Get:5 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:6 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:8 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:9 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:10 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:11 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get:12 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-10 [89.6 kB] Get:13 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:14 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-3+b1 [1402 kB] Get:15 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:16 http://localhost:3142/debian sid/main arm64 architecture-properties arm64 0.1.1+b1 [1880 B] Get:17 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:18 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:19 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:22 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.42-4 [3371 kB] Get:23 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu-base amd64 13.2.0-12cross1 [42.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 cpp-13-aarch64-linux-gnu amd64 13.2.0-12cross1 [9774 kB] Get:25 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:13.2.0-7 [4724 B] Get:26 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:27 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:28 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:29 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.37-12cross1 [1006 kB] Get:30 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 14-20240127-1cross1 [43.7 kB] Get:31 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 14-20240127-1cross1 [116 kB] Get:32 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 14-20240127-1cross1 [23.1 kB] Get:33 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 14-20240127-1cross1 [9360 B] Get:34 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 14-20240127-1cross1 [2561 kB] Get:35 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 14-20240127-1cross1 [1155 kB] Get:36 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 14-20240127-1cross1 [2367 kB] Get:37 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 14-20240127-1cross1 [588 kB] Get:38 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 14-20240127-1cross1 [1034 kB] Get:39 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 14-20240127-1cross1 [1386 kB] Get:40 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-arm64-cross all 13.2.0-12cross1 [2231 kB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu amd64 13.2.0-12cross1 [18.8 MB] Get:42 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:13.2.0-7 [1444 B] Get:43 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.37-12cross1 [1427 kB] Get:44 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-arm64-cross all 13.2.0-12cross1 [2142 kB] Get:45 http://localhost:3142/debian sid/main amd64 g++-13-aarch64-linux-gnu amd64 13.2.0-12cross1 [10.7 MB] Get:46 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:13.2.0-7 [1200 B] Get:47 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:48 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:49 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:51 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:52 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:53 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:54 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get:55 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:56 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:57 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:58 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:60 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:62 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.10 [3484 B] Get:63 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.2 [87.7 kB] Get:64 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:65 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:66 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:67 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:68 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:70 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1 [189 kB] Get:71 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:72 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:73 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:74 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:75 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.2 [900 kB] Get:76 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:77 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:78 http://localhost:3142/debian sid/main arm64 gcc-13-base arm64 13.2.0-21 [44.4 kB] Get:79 http://localhost:3142/debian sid/main arm64 gcc-14-base arm64 14-20240315-1 [42.9 kB] Get:80 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 14-20240315-1 [43.7 kB] Get:81 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.37-15.1 [2321 kB] Get:82 http://localhost:3142/debian sid/main arm64 libasan8 arm64 14-20240315-1 [2569 kB] Get:83 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 14-20240315-1 [9992 B] Get:84 http://localhost:3142/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get:85 http://localhost:3142/debian sid/main arm64 libbz2-1.0 arm64 1.0.8-5.1 [37.9 kB] Get:86 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.36-4 [90.5 kB] Get:87 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-4 [121 kB] Get:88 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.37-15.1 [1433 kB] Get:89 http://localhost:3142/debian sid/main arm64 libcom-err2t64 arm64 1.47.0-2.3+b1 [20.4 kB] Get:90 http://localhost:3142/debian sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2+b1 [533 kB] Get:91 http://localhost:3142/debian sid/main arm64 libnettle8t64 arm64 3.9.1-2.2 [301 kB] Get:92 http://localhost:3142/debian sid/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [324 kB] Get:93 http://localhost:3142/debian sid/main arm64 libunistring5 arm64 1.2-1 [402 kB] Get:94 http://localhost:3142/debian sid/main arm64 libidn2-0 arm64 2.3.7-2 [127 kB] Get:95 http://localhost:3142/debian sid/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get:96 http://localhost:3142/debian sid/main arm64 libp11-kit0 arm64 0.25.3-4 [400 kB] Get:97 http://localhost:3142/debian sid/main arm64 libtasn1-6 arm64 4.19.0-3+b2 [46.4 kB] Get:98 http://localhost:3142/debian sid/main arm64 libgnutls30t64 arm64 3.8.3-1.1+b1 [1333 kB] Get:99 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-6 [32.6 kB] Get:100 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-6 [80.1 kB] Get:101 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get:102 http://localhost:3142/debian sid/main arm64 libssl3t64 arm64 3.1.5-1.1 [1839 kB] Get:103 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-6 [315 kB] Get:104 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-6 [124 kB] Get:105 http://localhost:3142/debian sid/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-6 [625 kB] Get:106 http://localhost:3142/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get:107 http://localhost:3142/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get:108 http://localhost:3142/debian sid/main arm64 libldap-2.5-0 arm64 2.5.16+dfsg-2 [173 kB] Get:109 http://localhost:3142/debian sid/main arm64 libnghttp2-14 arm64 1.59.0-1+b1 [70.9 kB] Get:110 http://localhost:3142/debian sid/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get:111 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.3.dfsg-3.1 [83.8 kB] Get:112 http://localhost:3142/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b3 [56.7 kB] Get:113 http://localhost:3142/debian sid/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b1 [207 kB] Get:114 http://localhost:3142/debian sid/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [256 kB] Get:115 http://localhost:3142/debian sid/main arm64 libcurl3t64-gnutls arm64 8.6.0-4 [397 kB] Get:116 http://localhost:3142/debian sid/main arm64 libcurl4-gnutls-dev arm64 8.6.0-4 [513 kB] Get:117 http://localhost:3142/debian sid/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get:118 http://localhost:3142/debian sid/main arm64 libdeflate-dev arm64 1.20-1 [50.5 kB] Get:119 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 14-20240315-1 [123 kB] Get:120 http://localhost:3142/debian sid/main arm64 libitm1 arm64 14-20240315-1 [23.8 kB] Get:121 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 14-20240315-1 [1157 kB] Get:122 http://localhost:3142/debian sid/main arm64 libtsan2 arm64 14-20240315-1 [2376 kB] Get:123 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 14-20240315-1 [635 kB] Get:124 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 14-20240315-1 [1034 kB] Get:125 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 14-20240315-1 [1435 kB] Get:126 http://localhost:3142/debian sid/main arm64 libgcc-13-dev arm64 13.2.0-21 [2238 kB] Get:127 http://localhost:3142/debian sid/main arm64 libgkarrays1t64 arm64 2.1.0+dfsg-4.2 [53.3 kB] Get:128 http://localhost:3142/debian sid/main arm64 libgkarrays-dev arm64 2.1.0+dfsg-4.2 [82.4 kB] Get:129 http://localhost:3142/debian sid/main arm64 libgzstream0 arm64 1.5+git20171107.9a20658-2 [7288 B] Get:130 http://localhost:3142/debian sid/main arm64 libgzstream-dev arm64 1.5+git20171107.9a20658-2 [7488 B] Get:131 http://localhost:3142/debian sid/main arm64 libhtscodecs2 arm64 1.6.0-1+b1 [71.6 kB] Get:132 http://localhost:3142/debian sid/main arm64 liblzma5 arm64 5.6.0-0.2 [216 kB] Get:133 http://localhost:3142/debian sid/main arm64 libhts3t64 arm64 1.19+ds-1.1+b1 [413 kB] Get:134 http://localhost:3142/debian sid/main arm64 liblzma-dev arm64 5.6.0-0.2 [267 kB] Get:135 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Get:136 http://localhost:3142/debian sid/main arm64 libhts-dev arm64 1.19+ds-1.1+b1 [1604 kB] Get:137 http://localhost:3142/debian sid/main arm64 libjellyfish-2.0-2 arm64 2.3.1-3 [61.8 kB] Get:138 http://localhost:3142/debian sid/main arm64 libjellyfish-2.0-dev arm64 2.3.1-3 [136 kB] Get:139 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get:140 http://localhost:3142/debian sid/main arm64 libstdc++-13-dev arm64 13.2.0-21 [2190 kB] Get:141 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get:142 http://localhost:3142/debian sid/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get:143 http://localhost:3142/debian sid/main arm64 pkg-config arm64 1.8.1-1+b2 [14.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 110 MB in 3s (42.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12828 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b2) ... Selecting previously unselected package libpopt0:amd64. Preparing to unpack .../001-libpopt0_1.19+dfsg-1+b1_amd64.deb ... Unpacking libpopt0:amd64 (1.19+dfsg-1+b1) ... Selecting previously unselected package rsync. Preparing to unpack .../002-rsync_3.2.7-1+b2_amd64.deb ... Unpacking rsync (3.2.7-1+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.39.3-10_amd64.deb ... Unpacking bsdextrautils (2.39.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.7-1+b2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1+b2) ... 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Unpacking libgcc-s1-arm64-cross (14-20240127-1cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../029-libgomp1-arm64-cross_14-20240127-1cross1_all.deb ... Unpacking libgomp1-arm64-cross (14-20240127-1cross1) ... Selecting previously unselected package libitm1-arm64-cross. Preparing to unpack .../030-libitm1-arm64-cross_14-20240127-1cross1_all.deb ... Unpacking libitm1-arm64-cross (14-20240127-1cross1) ... Selecting previously unselected package libatomic1-arm64-cross. Preparing to unpack .../031-libatomic1-arm64-cross_14-20240127-1cross1_all.deb ... Unpacking libatomic1-arm64-cross (14-20240127-1cross1) ... Selecting previously unselected package libasan8-arm64-cross. Preparing to unpack .../032-libasan8-arm64-cross_14-20240127-1cross1_all.deb ... Unpacking libasan8-arm64-cross (14-20240127-1cross1) ... Selecting previously unselected package liblsan0-arm64-cross. 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Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../071-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../072-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../073-debhelper_13.15.2_all.deb ... Unpacking debhelper (13.15.2) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../074-libfakeroot_1.34-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.34-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../075-fakeroot_1.34-1_amd64.deb ... Unpacking fakeroot (1.34-1) ... Selecting previously unselected package gcc-13-base:arm64. Preparing to unpack .../076-gcc-13-base_13.2.0-21_arm64.deb ... Unpacking gcc-13-base:arm64 (13.2.0-21) ... 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Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up gcc-13-base:arm64 (13.2.0-21) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up libc6-arm64-cross (2.37-12cross1) ... Setting up autopoint (0.21-14) ... Setting up libitm1-arm64-cross (14-20240127-1cross1) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-12cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b2) ... Setting up libpopt0:amd64 (1.19+dfsg-1+b1) ... Setting up libgcc-s1-arm64-cross (14-20240127-1cross1) ... Setting up libatomic1-arm64-cross (14-20240127-1cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (14-20240127-1cross1) ... Setting up libgomp1-arm64-cross (14-20240127-1cross1) ... Setting up gettext (0.21-14+b1) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-12cross1) ... Setting up libtool (2.4.7-7) ... Setting up libhwasan0-arm64-cross (14-20240127-1cross1) ... Setting up libc6-dev-arm64-cross (2.37-12cross1) ... Setting up pkgconf:arm64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (14-20240127-1cross1) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-7) ... Setting up pkg-config:arm64 (1.8.1-1+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libasan8-arm64-cross (14-20240127-1cross1) ... Setting up libtsan2-arm64-cross (14-20240127-1cross1) ... Setting up rsync (3.2.7-1+b2) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libubsan1-arm64-cross (14-20240127-1cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-arm64-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.15.2) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-12cross1) ... Setting up libstdc++-13-dev-arm64-cross (13.2.0-12cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-12cross1) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.10) ... Setting up libgcc-s1:arm64 (14-20240315-1) ... 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Setting up libkrb5support0:arm64 (1.20.1-6) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up libjellyfish-2.0-2:arm64 (2.3.1-3) ... Setting up libnettle8t64:arm64 (3.9.1-2.2) ... Setting up libcom-err2t64:arm64 (1.47.0-2.3+b1) ... Setting up libgmp10:arm64 (2:6.3.0+dfsg-2+b1) ... Setting up libp11-kit0:arm64 (0.25.3-4) ... Setting up libunistring5:arm64 (1.2-1) ... Setting up libatomic1:arm64 (14-20240315-1) ... Setting up libk5crypto3:arm64 (1.20.1-6) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgzstream0:arm64 (1.5+git20171107.9a20658-2) ... Setting up liblzma-dev:arm64 (5.6.0-0.2) ... Setting up libubsan1:arm64 (14-20240315-1) ... Setting up libhogweed6t64:arm64 (3.9.1-2.2) ... Setting up libgcc-13-dev:arm64 (13.2.0-21) ... Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... Setting up libc6-dev:arm64 (2.37-15.1) ... Setting up libkrb5-3:arm64 (1.20.1-6) ... Setting up libssh2-1t64:arm64 (1.11.0-4.1+b1) ... Setting up libdeflate-dev:arm64 (1.20-1) ... Setting up libstdc++-13-dev:arm64 (13.2.0-21) ... Setting up libjellyfish-2.0-dev:arm64 (2.3.1-3) ... Setting up libgkarrays1t64:arm64 (2.1.0+dfsg-4.2) ... Setting up libidn2-0:arm64 (2.3.7-2) ... Setting up libgzstream-dev:arm64 (1.5+git20171107.9a20658-2) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Setting up libgnutls30t64:arm64 (3.8.3-1.1+b1) ... Setting up libgkarrays-dev:arm64 (2.1.0+dfsg-4.2) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libldap-2.5-0:arm64 (2.5.16+dfsg-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b3) ... Setting up libcurl3t64-gnutls:arm64 (8.6.0-4) ... Setting up libcurl4-gnutls-dev:arm64 (8.6.0-4) ... Setting up libhts3t64:arm64 (1.19+ds-1.1+b1) ... Setting up libhts-dev:arm64 (1.19+ds-1.1+b1) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-21 gcc-13_13.2.0-21 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-21 libstdc++-13-dev-arm64-cross_13.2.0-12cross1 libstdc++6_14-20240315-1 libstdc++6-arm64-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: adduser_3.137 apt_2.7.14 architecture-properties_0.1.1+b1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-aarch64-linux-gnu_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.39.3-10 bsdutils_1:2.39.3-10 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-21 cpp-13-aarch64-linux-gnu_13.2.0-12cross1 cpp-13-x86-64-linux-gnu_13.2.0-21 cpp-aarch64-linux-gnu_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-arm64_12.10 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.2 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-21 g++-13-aarch64-linux-gnu_13.2.0-12cross1 g++-13-x86-64-linux-gnu_13.2.0-21 g++-aarch64-linux-gnu_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-21 gcc-13-aarch64-linux-gnu_13.2.0-12cross1 gcc-13-aarch64-linux-gnu-base_13.2.0-12cross1 gcc-13-base_13.2.0-21 gcc-13-cross-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-21 gcc-14-base_14-20240315-1 gcc-14-cross-base_14-20240127-1cross1 gcc-aarch64-linux-gnu_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.7.14 libarchive-zip-perl_1.68-1 libasan8_14-20240315-1 libasan8-arm64-cross_14-20240127-1cross1 libatomic1_14-20240315-1 libatomic1-arm64-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.39.3-10 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-15.1 libc-dev-bin_2.37-15.1 libc6_2.37-15.1 libc6-arm64-cross_2.37-12cross1 libc6-dev_2.37-15.1 libc6-dev-arm64-cross_2.37-12cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240315-1 libcom-err2t64_1.47.0-2.3+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libcurl3t64-gnutls_8.6.0-4 libcurl4-gnutls-dev_8.6.0-4 libdb5.3t64_5.3.28+dfsg2-6 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.2 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.20-1 libdeflate0_1.20-1 libdpkg-perl_1.22.6 libelf1t64_0.191-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-21 libgcc-13-dev-arm64-cross_13.2.0-12cross1 libgcc-s1_14-20240315-1 libgcc-s1-arm64-cross_14-20240127-1cross1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgkarrays-dev_2.1.0+dfsg-4.2 libgkarrays1t64_2.1.0+dfsg-4.2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.3-1.1+b1 libgomp1_14-20240315-1 libgomp1-arm64-cross_14-20240127-1cross1 libgpg-error0_1.47-3 libgprofng0_2.42-4 libgssapi-krb5-2_1.20.1-6 libgzstream-dev_1.5+git20171107.9a20658-2 libgzstream0_1.5+git20171107.9a20658-2 libhogweed6t64_3.9.1-2.2 libhts-dev_1.19+ds-1.1+b1 libhts3t64_1.19+ds-1.1+b1 libhtscodecs2_1.6.0-1+b1 libhwasan0_14-20240315-1 libhwasan0-arm64-cross_14-20240127-1cross1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240315-1 libitm1-arm64-cross_14-20240127-1cross1 libjansson4_2.14-2+b2 libjellyfish-2.0-2_2.3.1-3 libjellyfish-2.0-dev_2.3.1-3 libk5crypto3_1.20.1-6 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-6 libkrb5support0_1.20.1-6 libldap-2.5-0_2.5.16+dfsg-2 liblocale-gettext-perl_1.07-6+b2 liblsan0_14-20240315-1 liblsan0-arm64-cross_14-20240127-1cross1 liblz4-1_1.9.4-1+b2 liblzma-dev_5.6.0-0.2 liblzma5_5.6.0-0.2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.39.3-10 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.9.1-2.2 libnghttp2-14_1.59.0-1+b1 libp11-kit0_0.25.3-4 libpam-modules_1.5.3-6 libpam-modules-bin_1.5.3-6 libpam-runtime_1.5.3-6 libpam0t64_1.5.3-4 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-3.2 libpipeline1_1.5.7-1+b2 libpkgconf3_1.8.1-1+b2 libpopt0_1.19+dfsg-1+b1 libpsl5t64_0.21.2-1.1 libquadmath0_14-20240315-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b3 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b1 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2 libsframe1_2.42-4 libsmartcols1_2.39.3-10 libssh2-1t64_1.11.0-4.1+b1 libssl3t64_3.1.5-1.1 libstdc++-13-dev_13.2.0-21 libstdc++-13-dev-arm64-cross_13.2.0-12cross1 libstdc++6_14-20240315-1 libstdc++6-arm64-cross_14-20240127-1cross1 libsub-override-perl_0.10-1 libsystemd0_255.4-1+b1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.4+20240113-1 libtool_2.4.7-7 libtsan2_14-20240315-1 libtsan2-arm64-cross_14-20240127-1cross1 libubsan1_14-20240315-1 libubsan1-arm64-cross_14-20240127-1cross1 libuchardet0_0.0.8-1+b1 libudev1_255.4-1+b1 libunistring5_1.2-1 libuuid1_2.39.3-10 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b3 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.7.9-2 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3+b1 mawk_1.3.4.20240123-1 mount_2.39.3-10 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-3.2 perl-base_5.38.2-3.2 perl-modules-5.38_5.38.2-3.2 pkg-config_1.8.1-1+b2 pkgconf_1.8.1-1+b2 pkgconf-bin_1.8.1-1+b2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 rsync_3.2.7-1+b2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-7 tar_1.35+dfsg-3 tzdata_2024a-1 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.39.3-10 xz-utils_5.6.0-0.2 zlib1g_1:1.3.dfsg-3.1 zlib1g-dev_1:1.3.dfsg-3.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: crac Binary: crac Architecture: any Version: 2.5.2+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://crac.gforge.inria.fr/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/crac Vcs-Git: https://salsa.debian.org/med-team/crac.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync Package-List: crac deb science optional arch=any Checksums-Sha1: 3a29c15452fb1337fc2d5336a0a00ff72512e21f 658188 crac_2.5.2+dfsg.orig.tar.xz ae172330244046ea69775241ae2a3aefcc47ff81 15152 crac_2.5.2+dfsg-6.debian.tar.xz Checksums-Sha256: 66198b60f8bebb4d923a1230231949f8c7dc1adce92176b45f041726496c69fd 658188 crac_2.5.2+dfsg.orig.tar.xz 7535c1ad0e4267058e13931d2967f7ce72c39a88fe41c3c055e7ce446d0bb067 15152 crac_2.5.2+dfsg-6.debian.tar.xz Files: a58db6dc3a449b7dd4bea567bbb7233a 658188 crac_2.5.2+dfsg.orig.tar.xz 03c0fec9a98c32f7dc81800088df77c5 15152 crac_2.5.2+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmX5y7cACgkQPCZ2P2xn 5uKrug//VHQQhwxx60sOQDctxZuGdqKHR/i2u82vag5cmRd73/T7PCcHG/XYVEjg a/OMM2CQ1zWYP9V8e4bluyw5+w8N+w5N4kSTeUYeSiAomr8lHLbPiREE0oka2y7x nB6fjX2+vEEm3ZOpjtG9JLsdg0nMxK5TRD+Ig8PdYmae+WmGy79O/Vs/E83IdeHv pBRZtPIYqMCzTol7chVwVFo5GzrpQ3G7GQFD0qHBHrmuy7Qt68+VIEX38aG8/CvW yyG6IhXRUDKOUnH6BdFHZ8Lred5DRA8a6xINYrrYh7tygOgIXVESul6moeXTqZBW ij4c2zGl4y4qwlsj9WkbkIx576GYyloOhxoqa/ohOMb8T65xFOnWMPHmwwG0HS8K Unp6RrSgAKfof1Nu0vCQARTblylruQ4J49SSvCuTEXq/1Tn74BnLPEugeVNNRe2Q nmiJwDCEb8dzMZPAcOtKHd+W4oAUE+E+cfmixjtuNNGuxk8FJSwmAy2pdATs850g 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reproducible_build.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying bashism.patch dpkg-source: info: applying tempfile.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.SdPE33Tqmf/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-99e71335-c1e0-4de3-aaf5-cfc6263ed865 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package crac dpkg-buildpackage: info: source version 2.5.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'. libtoolize: copying file 'config/m4/libtool.m4' libtoolize: copying file 'config/m4/ltoptions.m4' libtoolize: copying file 'config/m4/ltsugar.m4' libtoolize: copying file 'config/m4/ltversion.m4' libtoolize: copying file 'config/m4/lt~obsolete.m4' configure.ac:147: installing 'config/compile' configure.ac:139: installing 'config/config.guess' configure.ac:139: installing 'config/config.sub' configure.ac:137: installing 'config/install-sh' configure.ac:137: installing 'config/missing' src/Makefile.am: installing 'config/depcomp' test_f/Makefile.am:109: warning: shell find . -name "*.should_get": non-POSIX variable name test_f/Makefile.am:109: (probably a GNU make extension) test_f/Makefile.am:110: warning: shell find . -name "*.fasta" -o -name "*.fa": non-POSIX variable name test_f/Makefile.am:110: (probably a GNU make extension) test_f/Makefile.am:111: warning: shell find . -name "*.fastq" -o -name "*.fq": non-POSIX variable name test_f/Makefile.am:111: (probably a GNU make extension) parallel-tests: installing 'config/test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gawk... (cached) mawk checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to enable C11 features... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-gcc... none checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking for aarch64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of aarch64-linux-gnu-g++... none checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ld used by aarch64-linux-gnu-gcc... (cached) /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... (cached) yes checking for dpkg... /usr/bin/dpkg checking for rpmbuild... no checking for sqrt in -lm... yes checking for pthread_join in -lpthread... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for sys/mkdev.h... no checking for sys/sysmacros.h... yes checking for fcntl.h... yes checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for limits.h... yes checking for locale.h... yes checking for memory.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for sys/file.h... yes checking for sys/param.h... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int64_t... yes checking for off_t... yes checking for size_t... (cached) yes checking for struct stat.st_blksize... yes checking for uint32_t... yes checking for uint8_t... yes checking for ptrdiff_t... yes (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for floor... yes checking for gettimeofday... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkfifo... yes checking for pow... yes checking for select... yes checking for sqrt... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for aarch64-linux-gnu-pkg-config... /usr/bin/aarch64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for libProgressBar... yes checking for gzread in -lz... yes checking for hts_hopen in -lhts... yes checking for libGkArrays... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating control config.status: creating crac.spec config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/libReadsInfo/Makefile config.status: creating src/libSSA/Makefile config.status: creating src/libReadsReader/Makefile config.status: creating src/libReadsReader/kseq/Makefile config.status: creating man/Makefile config.status: creating man/crac.1 config.status: creating scripts/crac-client config.status: creating test_f/Makefile config.status: creating test_f/bug/Makefile config.status: creating test_f/causes/Makefile config.status: creating test_f/cigar/Makefile config.status: creating test_f/splices_adjust/Makefile config.status: creating config/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' Making all in libReadsInfo make[3]: Entering directory '/<>/src/libReadsInfo' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-BioTagIndelInfo.o `test -f 'BioTagIndelInfo.cpp' || echo './'`BioTagIndelInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-BioUndeterminedInfo.o `test -f 'BioUndeterminedInfo.cpp' || echo './'`BioUndeterminedInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-cigarTypes.o `test -f 'cigarTypes.cpp' || echo './'`cigarTypes.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-Cigar.o `test -f 'Cigar.cpp' || echo './'`Cigar.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-DuplicationInfo.o `test -f 'DuplicationInfo.cpp' || echo './'`DuplicationInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-genericInfo.o `test -f 'genericInfo.cpp' || echo './'`genericInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-IndelInfo.o `test -f 'IndelInfo.cpp' || echo './'`IndelInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-repetitionInfo.o `test -f 'repetitionInfo.cpp' || echo './'`repetitionInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-SeqErrInfo.o `test -f 'SeqErrInfo.cpp' || echo './'`SeqErrInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-SNPInfo.o `test -f 'SNPInfo.cpp' || echo './'`SNPInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-SpliceInfo.o `test -f 'SpliceInfo.cpp' || echo './'`SpliceInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-SpliceInterInfo.o `test -f 'SpliceInterInfo.cpp' || echo './'`SpliceInterInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-SpliceIntraInfo.o `test -f 'SpliceIntraInfo.cpp' || echo './'`SpliceIntraInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-SpliceNoCoverInfo.o `test -f 'SpliceNoCoverInfo.cpp' || echo './'`SpliceNoCoverInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-SplicingInfo.o `test -f 'SplicingInfo.cpp' || echo './'`SplicingInfo.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-samLine.o `test -f 'samLine.cpp' || echo './'`samLine.cpp samLine.cpp: In constructor ‘OptionalField::OptionalField(const char*, char)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 60 | strncpy(tag,tag_name,2); | ^ samLine.cpp: In constructor ‘CharOptionalField::CharOptionalField(const char*, char)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In constructor ‘IntOptionalField::IntOptionalField(const char*, int)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In constructor ‘IntOptionalField::IntOptionalField(const char*, uint)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In constructor ‘StringOptionalField::StringOptionalField(const char*, std::string)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In constructor ‘StringOptionalField::StringOptionalField(const char*, char*)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In member function ‘void SamLine::addOptionalField(const char*, char)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In member function ‘void SamLine::addOptionalField(const char*, int)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In member function ‘void SamLine::addOptionalField(const char*, uint)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In member function ‘void SamLine::addOptionalField(const char*, const std::string&)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] samLine.cpp: In member function ‘void SamLine::addOptionalField(const char*, const char*)’: samLine.cpp:60:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-samHeader.o `test -f 'samHeader.cpp' || echo './'`samHeader.cpp samHeader.cpp: In member function ‘bam_hdr_t* SamHeader::writeBamHeader(samFile*)’: samHeader.cpp:160:15: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 160 | sam_hdr_write(out,h); | ~~~~~~~~~~~~~^~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-bamUtils.o `test -f 'bamUtils.cpp' || echo './'`bamUtils.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-tagInfo.o `test -f 'tagInfo.cpp' || echo './'`tagInfo.cpp In file included from ../libReadsReader/readsReader.h:57, from ../Read.h:55, from ../ReadIndex.h:52, from ../Support.h:59, from tagInfo.h:71, from tagInfo.cpp:53: ../libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ../libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ../libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -I/<>/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsInfo_a-undeterminedErrorInfo.o `test -f 'undeterminedErrorInfo.cpp' || echo './'`undeterminedErrorInfo.cpp rm -f libReadsInfo.a aarch64-linux-gnu-ar cru libReadsInfo.a libReadsInfo_a-BioTagIndelInfo.o libReadsInfo_a-BioUndeterminedInfo.o libReadsInfo_a-cigarTypes.o libReadsInfo_a-Cigar.o libReadsInfo_a-DuplicationInfo.o libReadsInfo_a-genericInfo.o libReadsInfo_a-IndelInfo.o libReadsInfo_a-repetitionInfo.o libReadsInfo_a-SeqErrInfo.o libReadsInfo_a-SNPInfo.o libReadsInfo_a-SpliceInfo.o libReadsInfo_a-SpliceInterInfo.o libReadsInfo_a-SpliceIntraInfo.o libReadsInfo_a-SpliceNoCoverInfo.o libReadsInfo_a-SplicingInfo.o libReadsInfo_a-samLine.o libReadsInfo_a-samHeader.o libReadsInfo_a-bamUtils.o libReadsInfo_a-tagInfo.o libReadsInfo_a-undeterminedErrorInfo.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libReadsInfo.a make[3]: Leaving directory '/<>/src/libReadsInfo' Making all in libSSA make[3]: Entering directory '/<>/src/libSSA' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o cracIndex.o cracIndex.cpp cracIndex.cpp:85:30: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 85 | cerr << "\tCompiled on " <<__DATE__ << endl << endl; | ^~~~~~~~ In file included from ./seqan/basic.h:64, from ./seqan/sequence.h:27, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/basic/basic_holder.h: In function ‘void seqan::setValue(Holder&, TValue&)’: ./seqan/basic/basic_holder.h:1001:66: warning: typedef ‘THolderType’ locally defined but not used [-Wunused-local-typedefs] 1001 | typedef typename Value >::Type THolderType; | ^~~~~~~~~~~ ./seqan/basic/basic_holder.h: In function ‘typename seqan::Reference >::Type seqan::value(Holder&)’: ./seqan/basic/basic_holder.h:1027:66: warning: typedef ‘THolderType’ locally defined but not used [-Wunused-local-typedefs] 1027 | typedef typename Value >::Type THolderType; | ^~~~~~~~~~~ ./seqan/basic/basic_holder.h: In function ‘void seqan::assignValue(Holder&, const TSource&)’: ./seqan/basic/basic_holder.h:1051:66: warning: typedef ‘THostValue’ locally defined but not used [-Wunused-local-typedefs] 1051 | typedef typename Value >::Type THostValue; | ^~~~~~~~~~ In file included from ./seqan/sequence.h:38: ./seqan/sequence/lexical.h: In function ‘void seqan::compare_(Lexical&, TLeft&, TRight&)’: ./seqan/sequence/lexical.h:239:45: warning: typedef ‘TLeftValue’ locally defined but not used [-Wunused-local-typedefs] 239 | typedef typename Value::Type TLeftValue; | ^~~~~~~~~~ In file included from ./seqan/sequence.h:51: ./seqan/sequence/string_base.h: In function ‘void seqan::assign(String&, const TSource&, Tag)’: ./seqan/sequence/string_base.h:811:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 811 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(String&, const TSource&, TSize, Tag)’: ./seqan/sequence/string_base.h:821:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 821 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(String&, const TSourceValue*, Tag)’: ./seqan/sequence/string_base.h:834:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 834 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(String&, const TSourceValue*, TSize, Tag)’: ./seqan/sequence/string_base.h:844:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 844 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(String&, const TSource&, Tag)’: ./seqan/sequence/string_base.h:1044:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1044 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(String&, const TSource&, typename Size >::Type, Tag)’: ./seqan/sequence/string_base.h:1056:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1056 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(String&, TSourceValue*, Tag)’: ./seqan/sequence/string_base.h:1070:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1070 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(String&, TSourceValue*, typename Size >::Type, Tag)’: ./seqan/sequence/string_base.h:1082:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1082 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(String&, typename Size >::Type, typename Size >::Type, const TSource&, Tag)’: ./seqan/sequence/string_base.h:1249:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1249 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(String&, typename Size >::Type, typename Size >::Type, const TSource&, typename Size >::Type, Tag)’: ./seqan/sequence/string_base.h:1263:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1263 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(String&, typename Size >::Type, typename Size >::Type, const TSourceValue*, Tag)’: ./seqan/sequence/string_base.h:1279:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1279 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(String&, typename Size >::Type, typename Size >::Type, const TSourceValue*, typename Size >::Type, Tag)’: ./seqan/sequence/string_base.h:1293:51: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1293 | typedef String TTarget; | ^~~~~~~ In file included from ./seqan/sequence.h:53: ./seqan/sequence/string_alloc.h: In function ‘typename seqan::Size > >::Type seqan::reserve(String >&, _TSize, Insist)’: ./seqan/sequence/string_alloc.h:456:70: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 456 | typedef typename Size< String > >::Type TSize; | ^~~~~ In file included from ./seqan/sequence.h:57: ./seqan/sequence/string_packed.h: In static member function ‘static typename seqan::Size::Type seqan::_ClearSpace_String_Packed_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type)’: ./seqan/sequence/string_packed.h:594:62: warning: typedef ‘TIterator’ locally defined but not used [-Wunused-local-typedefs] 594 | typedef typename Iterator::Type TIterator; | ^~~~~~~~~ ./seqan/sequence/string_packed.h: In function ‘typename seqan::Size > >::Type seqan::reserve(String >&, _TSize, Insist)’: ./seqan/sequence/string_packed.h:758:70: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 758 | typedef typename Size< String > >::Type TSize; | ^~~~~ In file included from ./seqan/sequence.h:62: ./seqan/sequence/sequence_multiple.h: In function ‘void seqan::subset(StringSet > >&, StringSet > >&, TIds, TLength)’: ./seqan/sequence/sequence_multiple.h:1647:55: warning: typedef ‘TId’ locally defined but not used [-Wunused-local-typedefs] 1647 | typedef typename Id::Type TId; | ^~~ In file included from ./seqan/index.h:82, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:11: ./seqan/index/shape_base.h: In function ‘typename seqan::Value > >::Type seqan::hash(Shape >&, TIter)’: ./seqan/index/shape_base.h:273:81: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 273 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value > >::Type seqan::hash(Shape >&, TIter)’: ./seqan/index/shape_base.h:309:81: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 309 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h:310:81: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 310 | typedef typename Size< Shape > >::Type TSize; | ^~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hash(Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:322:73: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 322 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hashUpper(Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:424:73: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 424 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hash2(Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:492:73: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 492 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ In file included from ./seqan/index.h:83: ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > > >::Type seqan::hash(Shape > >&, TIter)’: ./seqan/index/shape_gapped.h:370:81: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 370 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > >::Type seqan::hash(Shape >&, TIter, TSize)’: ./seqan/index/shape_gapped.h:387:89: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 387 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > >::Type seqan::hashUpper(Shape >&, TIter, TSize)’: ./seqan/index/shape_gapped.h:415:89: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 415 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ In file included from ./seqan/file.h:66, from /<>/src/libSSA/karkkainen_bwt/multikey_qsort.h:6, from /<>/src/libSSA/karkkainen_bwt/diff_sample.h:8, from /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:13: ./seqan/file/file_format_fasta_align.h: In function ‘void seqan::read(TFile&, Align&, FastaAlign)’: ./seqan/file/file_format_fasta_align.h:138:44: warning: typedef ‘TRow’ locally defined but not used [-Wunused-local-typedefs] 138 | typedef typename Row::Type TRow; | ^~~~ ./seqan/file/file_format_fasta_align.h: In function ‘void seqan::_write_impl(TFile&, Align&, TStringContainer&, FastaAlign)’: ./seqan/file/file_format_fasta_align.h:252:49: warning: typedef ‘TPosition’ locally defined but not used [-Wunused-local-typedefs] 252 | typedef typename Position::Type TPosition; | ^~~~~~~~~ In file included from ./seqan/file.h:69: ./seqan/file/file_format_cgviz.h: In function ‘void seqan::_write_impl(TFile&, Align&, TStringContainer&, CGViz)’: ./seqan/file/file_format_cgviz.h:66:44: warning: typedef ‘TRow’ locally defined but not used [-Wunused-local-typedefs] 66 | typedef typename Row::Type TRow; | ^~~~ /<>/src/libSSA/karkkainen_bwt/diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: /<>/src/libSSA/karkkainen_bwt/diff_sample.h:156:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 156 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ /<>/src/libSSA/karkkainen_bwt/diff_sample.h:156:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 156 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ /<>/src/libSSA/karkkainen_bwt/diff_sample.h:157:41: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ /<>/src/libSSA/karkkainen_bwt/diff_sample.h:157:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h: In destructor ‘KarkkainenBlockwiseSA::~KarkkainenBlockwiseSA()’: /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:206:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if(_dc != NULL) delete _dc; _dc = NULL; // difference cover sample | ^~ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:206:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if(_dc != NULL) delete _dc; _dc = NULL; // difference cover sample | ^~~ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::buildSamples()’: /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:380:44: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs] 380 | typedef typename Value::Type TAlphabet; | ^~~~~~~~~ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA::nextBlock()’: /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:745:44: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs] 745 | typedef typename Value::Type TAlphabet; | ^~~~~~~~~ ./seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts, seqan::Packed<> > >’: ./seqan/sequence/string_packed.h:906:72: required from ‘typename seqan::Position > >::Type seqan::position(const Iter >&) [with TContainer = const String, Packed<> >; THostspec = Alloc; typename Position > >::Type = long unsigned int]’ ./seqan/sequence/string_packed.h:1237:17: required from ‘typename seqan::Difference > >::Type seqan::operator-(const Iter >&, const Iter >&) [with TContainer = const String, Packed<> >; THostspec = Alloc; typename Difference > >::Type = long int]’ ./seqan/sequence/string_base.h:181:29: required from ‘typename seqan::Size >::Type seqan::length(const String&) [with TValue = SimpleType; TSpec = Packed<>; typename Size >::Type = long unsigned int]’ /<>/src/libSSA/karkkainen_bwt/blockwise_sa.h:354:30: required from here ./seqan/sequence/string_packed.h:294:51: warning: comparison between ‘enum seqan::BitsPerValue >::’ and ‘enum seqan::BitsPerValue::’ [-Wenum-compare] 294 | VALUES_PER_WORD = (BITS_PER_VALUE > BITS_PER_HOST_VALUE) ? 1 : (BITS_PER_HOST_VALUE / BITS_PER_VALUE), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts, seqan::Packed<> > >’: ./seqan/sequence/string_packed.h:958:79: required from ‘typename seqan::GetValue > >::Type seqan::getValue(const Iter >&) [with TContainer = String, Packed<> >; THostspec = Alloc; typename GetValue > >::Type = SimpleType]’ ./seqan/basic/basic_proxy.h:242:17: required from ‘typename seqan::GetValue >::Type seqan::getValue(const Proxy&) [with TSpec = IteratorProxy, Packed<> >, Packed<> > >; typename GetValue >::Type = SimpleType]’ ./seqan/basic/basic_proxy.h:272:34: required from ‘typename seqan::Convert >::Type seqan::convertImpl(Convert, const Proxy&) [with TTarget = char; T = Proxy, Packed<> >, Packed<> > > >; TSpec = IteratorProxy, Packed<> >, Packed<> > >; typename Convert >::Type = char]’ ./seqan/basic/basic_converter.h:111:20: required from ‘typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = char; TSource = Proxy, Packed<> >, Packed<> > > >; typename Convert::Type = char]’ cracIndex.cpp:224:29: required from here ./seqan/sequence/string_packed.h:294:51: warning: comparison between ‘enum seqan::BitsPerValue >::’ and ‘enum seqan::BitsPerValue::’ [-Wenum-compare] In file included from ./seqan/basic.h:101: ./seqan/basic/basic_alphabet_trait_basic.h: In instantiation of ‘void seqan::_arrayCopyForward_Pointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]’: ./seqan/basic/basic_alphabet_trait_basic.h:226:27: required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]’ ./seqan/basic/basic_alphabet_trait_basic.h:102:18: required from ‘void seqan::_arrayConstructCopy_Pointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]’ ./seqan/basic/basic_alphabet_trait_basic.h:121:29: required from ‘void seqan::arrayConstructCopy(TValue*, TValue*, TValue*) [with TValue = SimpleType]’ ./seqan/sequence/string_alloc.h:421:21: required from ‘typename seqan::Size > >::Type seqan::reserve(String >&, _TSize, Tag) [with TValue = SimpleType; TSpec = void; _TSize = long unsigned int; TExpand = TagExact_; typename Size > >::Type = long unsigned int]’ ./seqan/sequence/string_base.h:1433:33: required from ‘static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc >; TExpand = const seqan::Tag; typename seqan::Size::Type = long unsigned int]’ ./seqan/sequence/string_base.h:1459:52: required from ‘typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc; TSize = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]’ ./seqan/sequence/sequence_interface.h:1360:15: required from ‘typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc >; TSize = long unsigned int; typename Size::Type = long unsigned int]’ ./seqan/file/file_format_fasta.h:269:8: required from ‘void seqan::read(TFile&, TData&, TSize, Fasta) [with TFile = std::basic_ifstream; TData = String, Alloc >; TSize = long unsigned int; Fasta = const Tag]’ ./seqan/file/file_format_fasta.h:309:6: required from ‘void seqan::read(TFile&, TData&, Fasta) [with TFile = std::basic_ifstream; TData = String, Alloc >; Fasta = const Tag]’ cracIndex.cpp:142:13: required from here ./seqan/basic/basic_alphabet_trait_basic.h:207:16: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘struct seqan::SimpleType’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 207 | memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./seqan/basic.h:106: ./seqan/basic/basic_alphabet_simple.h:57:8: note: ‘struct seqan::SimpleType’ declared here 57 | struct SimpleType | ^~~~~~~~~~ In file included from ./seqan/basic.h:61: In function ‘void seqan::allocate(T&, TValue*&, TSize, Tag) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = TagAllocateStorage_]’, inlined from ‘seqan::Value >, 0>::Type* seqan::_allocateStorage(String >&, size_t)’ at ./seqan/sequence/string_alloc.h:294:11, inlined from ‘typename seqan::Value >::Type* seqan::_reallocateStorage(String&, typename Size >::Type, Exact) [with TValue = unsigned int; TSpec = Alloc]’ at ./seqan/sequence/string_base.h:1353:26, inlined from ‘typename seqan::Size > >::Type seqan::reserve(String >&, _TSize, Tag) [with TValue = unsigned int; TSpec = void; _TSize = long unsigned int; TExpand = TagExact_]’ at ./seqan/sequence/string_alloc.h:418:88, inlined from ‘static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = const seqan::Tag]’ at ./seqan/sequence/string_base.h:1433:33, inlined from ‘typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc; TSize = long unsigned int; TExpand = TagExact_]’ at ./seqan/sequence/string_base.h:1459:52, inlined from ‘void DifferenceCoverSample::build() [with TStr = seqan::String, seqan::Packed<> >]’ at /<>/src/libSSA/karkkainen_bwt/diff_sample.h:781:9: ./seqan/basic/basic_allocator_interface.h:159:39: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 159 | data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/new_allocator.h:34, from /usr/aarch64-linux-gnu/include/c++/13/aarch64-linux-gnu/bits/c++allocator.h:33, from /usr/aarch64-linux-gnu/include/c++/13/bits/allocator.h:46, from /usr/aarch64-linux-gnu/include/c++/13/string:43, from /usr/aarch64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/aarch64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/aarch64-linux-gnu/include/c++/13/ios:44, from /usr/aarch64-linux-gnu/include/c++/13/ostream:40, from /usr/aarch64-linux-gnu/include/c++/13/iostream:41, from cracIndex.cpp:52: /usr/aarch64-linux-gnu/include/c++/13/new: In member function ‘void DifferenceCoverSample::build() [with TStr = seqan::String, seqan::Packed<> >]’: /usr/aarch64-linux-gnu/include/c++/13/new:126:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function ‘void seqan::allocate(T&, TValue*&, TSize, Tag) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = TagAllocateStorage_]’, inlined from ‘seqan::Value >, 0>::Type* seqan::_allocateStorage(String >&, size_t)’ at ./seqan/sequence/string_alloc.h:294:11, inlined from ‘typename seqan::Value >::Type* seqan::_reallocateStorage(String&, typename Size >::Type, Exact) [with TValue = unsigned int; TSpec = Alloc]’ at ./seqan/sequence/string_base.h:1353:26, inlined from ‘typename seqan::Size > >::Type seqan::reserve(String >&, _TSize, Tag) [with TValue = unsigned int; TSpec = void; _TSize = long unsigned int; TExpand = TagExact_]’ at ./seqan/sequence/string_alloc.h:418:88, inlined from ‘static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = const seqan::Tag]’ at ./seqan/sequence/string_base.h:1433:33, inlined from ‘typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc; TSize = long unsigned int; TExpand = TagExact_]’ at ./seqan/sequence/string_base.h:1459:52, inlined from ‘typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]’ at ./seqan/sequence/sequence_interface.h:1360:15, inlined from ‘void DifferenceCoverSample::build() [with TStr = seqan::String, seqan::Packed<> >]’ at /<>/src/libSSA/karkkainen_bwt/diff_sample.h:857:8: ./seqan/basic/basic_allocator_interface.h:159:39: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 159 | data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/new: In member function ‘void DifferenceCoverSample::build() [with TStr = seqan::String, seqan::Packed<> >]’: /usr/aarch64-linux-gnu/include/c++/13/new:126:26: note: in a call to allocation function ‘void* operator new(std::size_t)’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o bitarray.o bitarray.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o bitrankw32int.o bitrankw32int.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o chrPosition.o chrPosition.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o HuffAlphabetRank.o HuffAlphabetRank.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Huffman_Codes.o Huffman_Codes.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o locateOnGenome.o locateOnGenome.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o locateTags.o locateTags.cpp In file included from /usr/include/libGkArrays/readsReader.h:109, from locateTags.h:60, from locateTags.cpp:53: /usr/include/libGkArrays/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ /usr/include/libGkArrays/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ /usr/include/libGkArrays/readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o SSA.o SSA.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o utils.o utils.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o GenomeInfo.o GenomeInfo.cpp rm -f libSSA.a aarch64-linux-gnu-ar cru libSSA.a bitarray.o bitrankw32int.o chrPosition.o HuffAlphabetRank.o Huffman_Codes.o locateOnGenome.o locateTags.o SSA.o utils.o GenomeInfo.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libSSA.a /bin/bash ../../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -lm -lpthread -lSSA -L/<>/src/libSSA/ -Wl,-z,relro -Wl,-z,now -o crac-index cracIndex.o libSSA.a -lhts -lz -lpthread -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -o crac-index cracIndex.o -lSSA -L/<>/src/libSSA/ libSSA.a -lhts -lz -lpthread -lm make[3]: Leaving directory '/<>/src/libSSA' Making all in libReadsReader make[3]: Entering directory '/<>/src/libReadsReader' Making all in kseq make[4]: Entering directory '/<>/src/libReadsReader/kseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/src/libReadsReader/kseq' make[4]: Entering directory '/<>/src/libReadsReader' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../config -I/<> -I/<>/src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libReadsReader_a-readsReader.o `test -f 'readsReader.cpp' || echo './'`readsReader.cpp rm -f libReadsReader.a aarch64-linux-gnu-ar cru libReadsReader.a libReadsReader_a-readsReader.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libReadsReader.a make[4]: Leaving directory '/<>/src/libReadsReader' make[3]: Leaving directory '/<>/src/libReadsReader' make[3]: Entering directory '/<>/src' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Classifier.o Classifier.cpp In file included from ./libReadsReader/readsReader.h:57, from ./Read.h:55, from ./ReadIndex.h:52, from ./Classifier.h:56, from Classifier.cpp:52: ./libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ Classifier.cpp: In member function ‘virtual void SingleReadClassifier::classify()’: Classifier.cpp:203:40: warning: ‘bioundetermined_type’ may be used uninitialized [-Wmaybe-uninitialized] 203 | taginfo->addBioUndetermined(suppoBreak->getLocationStartBreak(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | suppoBreak->getPositionStartBreak(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 | bioundetermined_type, | ~~~~~~~~~~~~~~~~~~~~~ 206 | message.c_str()); | ~~~~~~~~~~~~~~~~ Classifier.cpp:187:33: note: ‘bioundetermined_type’ was declared here 187 | BioUndeterminedInfo::Type bioundetermined_type; | ^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o classifyTags.o classifyTags.cpp classifyTags.cpp:421:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 421 | headerTemplate << "#Created on " <<__DATE__ << endl << "#" << endl; | ^~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from classifyTags.cpp:52: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o GkReadIndex.o GkReadIndex.cpp In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.hxx:119:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 119 | LargeBinVect(const CountWordSize length = 0, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:120:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:121:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:127:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 127 | inline LargeBinVect &operator=(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:155:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 155 | inline LargeBinVect operator()(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:158:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 158 | inline unsigned long int GetValue(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:161:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 161 | inline bool operator[](const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 177 | inline bool GetBit(const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:179:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 179 | inline LargeBinVect &SetBit(const CountWordSize i, const bool value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:182:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 182 | inline LargeBinVect &SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:191:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 191 | inline LargeBinVect &Resize(const CountWordSize length, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:194:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | inline LargeBinVect &Append(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:197:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 197 | inline LargeBinVect &Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:200:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 200 | inline LargeBinVect &operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:203:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 203 | inline LargeBinVect &operator++() throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:205:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 205 | inline LargeBinVect operator++(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:208:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 208 | inline LargeBinVect &operator--() throw (BinVectOverflow); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:210:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 210 | inline LargeBinVect operator--(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:214:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 214 | inline LargeBinVect Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241: /usr/include/libGkArrays/largebinvect.cxx:121:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | unsigned char *MyCalloc(const CountWordSize w, const int value = -1) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:136:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 136 | LargeBinVect::LargeBinVect(const CountWordSize length, const bool value) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:147:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 147 | LargeBinVect::LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:167:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 167 | LargeBinVect::LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:184:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 184 | LargeBinVect &LargeBinVect::operator=(const LargeBinVect &v) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:339:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 339 | LargeBinVect LargeBinVect::operator()(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:363:110: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 363 | unsigned long int LargeBinVect::GetValue(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:397:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 397 | bool LargeBinVect::operator[](const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:478:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 478 | bool LargeBinVect::GetBit(const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:493:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 493 | LargeBinVect &LargeBinVect::SetBit(const CountWordSize i, const bool value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:513:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 513 | LargeBinVect &LargeBinVect::SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:619:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 619 | LargeBinVect &LargeBinVect::Resize(const CountWordSize length, const bool value) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:653:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 653 | LargeBinVect &LargeBinVect::Append(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:661:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 661 | LargeBinVect &LargeBinVect::Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:673:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 673 | LargeBinVect &LargeBinVect::operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:711:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 711 | LargeBinVect &LargeBinVect::operator++() throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:727:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 727 | LargeBinVect LargeBinVect::operator++(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:734:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 734 | LargeBinVect &LargeBinVect::operator--() throw (BinVectOverflow) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:750:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 750 | LargeBinVect LargeBinVect::operator--(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:757:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 757 | LargeBinVect LargeBinVect::Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/solArray.h:160:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 160 | SolArray(void *ptr, array_type t, uintSA nbElements) throw (invalid_argument); | ^~~~~ /usr/include/libGkArrays/solArray.h:202:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 202 | void realloc(uintSA nbElements) throw (logic_error); | ^~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from GkReadIndex.h:59: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o JellyReadIndex.o JellyReadIndex.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from JellyReadIndex.h:59, from JellyReadIndex.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o crac.o crac.cpp crac.cpp:213:34: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 213 | printf("\tCompiled on %s.\n\n",__DATE__); | ^~~~~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.hxx:119:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 119 | LargeBinVect(const CountWordSize length = 0, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:120:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:121:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:127:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 127 | inline LargeBinVect &operator=(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:155:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 155 | inline LargeBinVect operator()(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:158:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 158 | inline unsigned long int GetValue(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:161:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 161 | inline bool operator[](const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 177 | inline bool GetBit(const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:179:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 179 | inline LargeBinVect &SetBit(const CountWordSize i, const bool value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:182:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 182 | inline LargeBinVect &SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:191:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 191 | inline LargeBinVect &Resize(const CountWordSize length, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:194:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | inline LargeBinVect &Append(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:197:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 197 | inline LargeBinVect &Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:200:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 200 | inline LargeBinVect &operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:203:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 203 | inline LargeBinVect &operator++() throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:205:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 205 | inline LargeBinVect operator++(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:208:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 208 | inline LargeBinVect &operator--() throw (BinVectOverflow); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:210:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 210 | inline LargeBinVect operator--(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:214:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 214 | inline LargeBinVect Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241: /usr/include/libGkArrays/largebinvect.cxx:121:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | unsigned char *MyCalloc(const CountWordSize w, const int value = -1) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:136:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 136 | LargeBinVect::LargeBinVect(const CountWordSize length, const bool value) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:147:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 147 | LargeBinVect::LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:167:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 167 | LargeBinVect::LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:184:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 184 | LargeBinVect &LargeBinVect::operator=(const LargeBinVect &v) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:339:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 339 | LargeBinVect LargeBinVect::operator()(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:363:110: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 363 | unsigned long int LargeBinVect::GetValue(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:397:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 397 | bool LargeBinVect::operator[](const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:478:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 478 | bool LargeBinVect::GetBit(const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:493:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 493 | LargeBinVect &LargeBinVect::SetBit(const CountWordSize i, const bool value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:513:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 513 | LargeBinVect &LargeBinVect::SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:619:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 619 | LargeBinVect &LargeBinVect::Resize(const CountWordSize length, const bool value) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:653:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 653 | LargeBinVect &LargeBinVect::Append(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:661:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 661 | LargeBinVect &LargeBinVect::Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:673:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 673 | LargeBinVect &LargeBinVect::operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:711:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 711 | LargeBinVect &LargeBinVect::operator++() throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:727:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 727 | LargeBinVect LargeBinVect::operator++(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:734:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 734 | LargeBinVect &LargeBinVect::operator--() throw (BinVectOverflow) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:750:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 750 | LargeBinVect LargeBinVect::operator--(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:757:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 757 | LargeBinVect LargeBinVect::Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/solArray.h:160:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 160 | SolArray(void *ptr, array_type t, uintSA nbElements) throw (invalid_argument); | ^~~~~ /usr/include/libGkArrays/solArray.h:202:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 202 | void realloc(uintSA nbElements) throw (logic_error); | ^~~~~ crac.cpp: In function ‘int main(int, char**)’: crac.cpp:1009:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 1009 | } catch (bad_alloc e) { | ^ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from crac.cpp:66: libReadsReader/readsReader.h: At global scope: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Parameters.o Parameters.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o SupportBreak.o SupportBreak.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from Support.h:59, from SupportBreak.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o BreakList.o BreakList.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o CandidatBreak.o CandidatBreak.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Support.o Support.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from Support.h:59, from Support.cpp:57: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In member function ‘ChrPosition* Support::getLocation(uint)’, inlined from ‘void Support::checkPairedConnection()’ at Support.cpp:1085:38: Support.cpp:470:21: warning: ‘best_candidate1’ may be used uninitialized [-Wmaybe-uninitialized] 470 | return locations[i]; | ^ Support.cpp: In member function ‘void Support::checkPairedConnection()’: Support.cpp:1030:8: note: ‘best_candidate1’ was declared here 1030 | uint best_candidate1, best_candidate2; | ^~~~~~~~~~~~~~~ In member function ‘ChrPosition* Support::getLocation(uint)’, inlined from ‘void Support::checkPairedConnection()’ at Support.cpp:1084:20: Support.cpp:470:21: warning: ‘best_candidate2’ may be used uninitialized [-Wmaybe-uninitialized] 470 | return locations[i]; | ^ Support.cpp: In member function ‘void Support::checkPairedConnection()’: Support.cpp:1030:25: note: ‘best_candidate2’ was declared here 1030 | uint best_candidate1, best_candidate2; | ^~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o locateServer.o locateServer.cpp locateServer.cpp: In function ‘void* launchSubServer(void*)’: locateServer.cpp:464:8: warning: unused variable ‘threshold’ [-Wunused-variable] 464 | uint threshold = indexTags->getFactorLength(); | ^~~~~~~~~ locateServer.cpp:466:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable] 466 | char *dontCare, *variable, *tag_length, *factor; | ^~~~~~~~ locateServer.cpp: In function ‘void locateServer(ClassifyTags*, const char*, const char*)’: locateServer.cpp:717:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable] 717 | char *dontCare; | ^~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from locateServer.cpp:59: libReadsReader/readsReader.h: At global scope: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o utils.o utils.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../config -I/<> -I/<>/src -I/<>/src/libSSA -I/<>/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Bitset.o Bitset.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -lGkArrays -ljellyfish-2.0 -lm -lpthread -lhts -lSSA -lReadsInfo -lReadsReader -lgzstream -L/<>/src/libSSA -L/<>/src/libReadsInfo -L/<>/src/libReadsReader -ljellyfish-2.0 -lGkArrays -lProgressBar -Wl,-z,relro -Wl,-z,now -o crac Classifier.o classifyTags.o GkReadIndex.o JellyReadIndex.o crac.o Parameters.o SupportBreak.o BreakList.o CandidatBreak.o Support.o locateServer.o utils.o Bitset.o /<>/src/libSSA/libSSA.a /<>/src/libReadsInfo/libReadsInfo.a /<>/src/libReadsReader/libReadsReader.a -lhts -lz -lpthread -lm libtool: link: aarch64-linux-gnu-g++ -std=c++0x -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -o crac Classifier.o classifyTags.o GkReadIndex.o JellyReadIndex.o crac.o Parameters.o SupportBreak.o BreakList.o CandidatBreak.o Support.o locateServer.o utils.o Bitset.o -lSSA -lReadsInfo -lReadsReader -lgzstream -L/<>/src/libSSA -L/<>/src/libReadsInfo -L/<>/src/libReadsReader /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lGkArrays -lProgressBar /<>/src/libSSA/libSSA.a /<>/src/libReadsInfo/libReadsInfo.a /<>/src/libReadsReader/libReadsReader.a -lhts -lz -lpthread -lm ln -s -f /<>/src/libSSA/crac-index crac-index make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in man make[2]: Entering directory '/<>/man' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/man' Making all in scripts make[2]: Entering directory '/<>/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/scripts' Making all in test_f make[2]: Entering directory '/<>/test_f' Making all in causes make[3]: Entering directory '/<>/test_f/causes' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/causes' Making all in bug make[3]: Entering directory '/<>/test_f/bug' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/bug' Making all in cigar make[3]: Entering directory '/<>/test_f/cigar' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/cigar' Making all in splices_adjust make[3]: Entering directory '/<>/test_f/splices_adjust' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test_f/splices_adjust' make[3]: Entering directory '/<>/test_f' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>/test_f' make[2]: Leaving directory '/<>/test_f' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/crac/ -a make -j1 install DESTDIR=/<>/crac-2.5.2\+dfsg/debian/crac AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' Making install in libReadsInfo make[3]: Entering directory '/<>/src/libReadsInfo' make[4]: Entering directory '/<>/src/libReadsInfo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/libReadsInfo' make[3]: Leaving directory '/<>/src/libReadsInfo' Making install in libSSA make[3]: Entering directory '/<>/src/libSSA' make[4]: Entering directory '/<>/src/libSSA' /usr/bin/mkdir -p '/<>/debian/crac/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c crac-index '/<>/debian/crac/usr/bin' libtool: install: /usr/bin/install -c crac-index /<>/debian/crac/usr/bin/crac-index make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/libSSA' make[3]: Leaving directory '/<>/src/libSSA' Making install in libReadsReader make[3]: Entering directory '/<>/src/libReadsReader' Making install in kseq make[4]: Entering directory '/<>/src/libReadsReader/kseq' make[5]: Entering directory '/<>/src/libReadsReader/kseq' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/crac/usr/include/crac-2.5.2/kseq' /usr/bin/install -c -m 644 kseq.h '/<>/debian/crac/usr/include/crac-2.5.2/kseq' make[5]: Leaving directory '/<>/src/libReadsReader/kseq' make[4]: Leaving directory '/<>/src/libReadsReader/kseq' make[4]: Entering directory '/<>/src/libReadsReader' make[5]: Entering directory '/<>/src/libReadsReader' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/libReadsReader' make[4]: Leaving directory '/<>/src/libReadsReader' make[3]: Leaving directory '/<>/src/libReadsReader' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/crac/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c crac '/<>/debian/crac/usr/bin' libtool: install: /usr/bin/install -c crac /<>/debian/crac/usr/bin/crac make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/crac/usr/share/man/man1' /usr/bin/install -c -m 644 crac.1 '/<>/debian/crac/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' Making install in scripts make[2]: Entering directory '/<>/scripts' make[3]: Entering directory '/<>/scripts' /usr/bin/mkdir -p '/<>/debian/crac/usr/bin' /usr/bin/install -c crac-client '/<>/debian/crac/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/scripts' make[2]: Leaving directory '/<>/scripts' Making install in test_f make[2]: Entering directory '/<>/test_f' Making install in causes make[3]: Entering directory '/<>/test_f/causes' make[4]: Entering directory '/<>/test_f/causes' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/causes' make[3]: Leaving directory '/<>/test_f/causes' Making install in bug make[3]: Entering directory '/<>/test_f/bug' make[4]: Entering directory '/<>/test_f/bug' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/bug' make[3]: Leaving directory '/<>/test_f/bug' Making install in cigar make[3]: Entering directory '/<>/test_f/cigar' make[4]: Entering directory '/<>/test_f/cigar' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/cigar' make[3]: Leaving directory '/<>/test_f/cigar' Making install in splices_adjust make[3]: Entering directory '/<>/test_f/splices_adjust' make[4]: Entering directory '/<>/test_f/splices_adjust' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f/splices_adjust' make[3]: Leaving directory '/<>/test_f/splices_adjust' make[3]: Entering directory '/<>/test_f' make[4]: Entering directory '/<>/test_f' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/test_f' make[3]: Leaving directory '/<>/test_f' make[2]: Leaving directory '/<>/test_f' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' mkdir debian/crac/usr/share/doc/crac/examples rsync -a --exclude=Makefile* test_f debian/crac/usr/share/doc/crac/examples sed -i 's+${abs_top_builddir:-\.\./\.\.}/src/crac+crac+' `grep -wRl crac debian/crac/usr/share/doc/crac/examples/*` sed -i 's+$abs_top_builddir/src/crac-index+crac-index+' `grep -wRl crac-index debian/crac/usr/share/doc/crac/examples/*` make[1]: Leaving directory '/<>' dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package crac: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package crac: substitution variable ${misc:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'crac' in '../crac_2.5.2+dfsg-6_arm64.deb'. dpkg-deb: building package 'crac-dbgsym' in '../crac-dbgsym_2.5.2+dfsg-6_arm64.deb'. dpkg-genbuildinfo --build=any -O../crac_2.5.2+dfsg-6_arm64.buildinfo dpkg-genchanges --build=any -O../crac_2.5.2+dfsg-6_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-03-27T09:55:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ crac_2.5.2+dfsg-6_arm64.changes: -------------------------------- Format: 1.8 Date: Tue, 19 Mar 2024 18:27:00 +0100 Source: crac Binary: crac crac-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.5.2+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: crac - integrated RNA-Seq read analysis Changes: crac (2.5.2+dfsg-6) unstable; urgency=medium . * Team upload. * d/control: stop building on 32-bit architectures. Checksums-Sha1: 673250b720c5d558e90c259f8f475ec3c93bba93 1775776 crac-dbgsym_2.5.2+dfsg-6_arm64.deb d3c005a29534f050d53adcfa3e19cd2191b2a843 6505 crac_2.5.2+dfsg-6_arm64.buildinfo fd2ea201cf0a51a253ded529087d66b83e967804 446648 crac_2.5.2+dfsg-6_arm64.deb Checksums-Sha256: 259dce03a5e64a46ba62a997de92efb9cd6b254ee0155ef4248ed8acfde86884 1775776 crac-dbgsym_2.5.2+dfsg-6_arm64.deb 87c27d93692980035e94c84f292a25c221e07f9e60ec93e75f2fc35e40dac79a 6505 crac_2.5.2+dfsg-6_arm64.buildinfo 5a313e4e25522909dbdda1d5a24fefa97ce0453bdbcfa14c013cc9d37ca7b8bf 446648 crac_2.5.2+dfsg-6_arm64.deb Files: 3e463e9b4b1aa78abaa06a643e06b47f 1775776 debug optional crac-dbgsym_2.5.2+dfsg-6_arm64.deb aee5929d8ee3e3784e1eb09e0a4f019d 6505 science optional crac_2.5.2+dfsg-6_arm64.buildinfo f7f86799611214ccfb379b0fb2692d1f 446648 science optional crac_2.5.2+dfsg-6_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: crac Binary: crac crac-dbgsym Architecture: arm64 Version: 2.5.2+dfsg-6 Checksums-Md5: 3e463e9b4b1aa78abaa06a643e06b47f 1775776 crac-dbgsym_2.5.2+dfsg-6_arm64.deb f7f86799611214ccfb379b0fb2692d1f 446648 crac_2.5.2+dfsg-6_arm64.deb Checksums-Sha1: 673250b720c5d558e90c259f8f475ec3c93bba93 1775776 crac-dbgsym_2.5.2+dfsg-6_arm64.deb fd2ea201cf0a51a253ded529087d66b83e967804 446648 crac_2.5.2+dfsg-6_arm64.deb Checksums-Sha256: 259dce03a5e64a46ba62a997de92efb9cd6b254ee0155ef4248ed8acfde86884 1775776 crac-dbgsym_2.5.2+dfsg-6_arm64.deb 5a313e4e25522909dbdda1d5a24fefa97ce0453bdbcfa14c013cc9d37ca7b8bf 446648 crac_2.5.2+dfsg-6_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 27 Mar 2024 09:55:46 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: architecture-properties (= 0.1.1+b1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.39.3-10), bsdutils (= 1:2.39.3-10), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-21), cpp-13-x86-64-linux-gnu (= 13.2.0-21), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.2), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-21), g++-13-x86-64-linux-gnu (= 13.2.0-21), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-21), gcc-13-base (= 13.2.0-21), gcc-13-x86-64-linux-gnu (= 13.2.0-21), gcc-14-base (= 14-20240315-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240315-1), libatomic1 (= 14-20240315-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.39.3-10), libbrotli1 (= 1.1.0-2+b3), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240315-1), libcom-err2t64 (= 1.47.0-2.3+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libcurl3t64-gnutls (= 8.6.0-4), libcurl4-gnutls-dev (= 8.6.0-4), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.2), libdeflate-dev (= 1.20-1), libdeflate0 (= 1.20-1), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-21), libgcc-s1 (= 14-20240315-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgkarrays-dev (= 2.1.0+dfsg-4.2), libgkarrays1t64 (= 2.1.0+dfsg-4.2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.3-1.1+b1), libgomp1 (= 14-20240315-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libgssapi-krb5-2 (= 1.20.1-6), libgzstream-dev (= 1.5+git20171107.9a20658-2), libgzstream0 (= 1.5+git20171107.9a20658-2), libhogweed6t64 (= 3.9.1-2.2), libhts-dev (= 1.19+ds-1.1+b1), libhts3t64 (= 1.19+ds-1.1+b1), libhtscodecs2 (= 1.6.0-1+b1), libhwasan0 (= 14-20240315-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240315-1), libjansson4 (= 2.14-2+b2), libjellyfish-2.0-2 (= 2.3.1-3), libjellyfish-2.0-dev (= 2.3.1-3), libk5crypto3 (= 1.20.1-6), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6), libkrb5support0 (= 1.20.1-6), libldap-2.5-0 (= 2.5.16+dfsg-2), liblsan0 (= 14-20240315-1), liblz4-1 (= 1.9.4-1+b2), liblzma-dev (= 5.6.0-0.2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-10), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.59.0-1+b1), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0t64 (= 1.5.3-4), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-1+b2), libpkgconf3 (= 1.8.1-1+b2), libpopt0 (= 1.19+dfsg-1+b1), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14-20240315-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b3), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b1), libsframe1 (= 2.42-4), libsmartcols1 (= 2.39.3-10), libssh2-1t64 (= 1.11.0-4.1+b1), libssl3t64 (= 3.1.5-1.1), libstdc++-13-dev (= 13.2.0-21), libstdc++6 (= 14-20240315-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240315-1), libubsan1 (= 14-20240315-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.39.3-10), libxml2 (= 2.9.14+dfsg-1.3+b2), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3+b1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), pkg-config (= 1.8.1-1+b2), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), rsync (= 3.2.7-1+b2), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.39.3-10), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1710869220" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ crac-dbgsym_2.5.2+dfsg-6_arm64.deb ---------------------------------- new Debian package, version 2.0. size 1775776 bytes: control archive=644 bytes. 410 bytes, 12 lines control 294 bytes, 3 lines md5sums Package: crac-dbgsym Source: crac Version: 2.5.2+dfsg-6 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1859 Depends: crac (= 2.5.2+dfsg-6) Section: debug Priority: optional Description: debug symbols for crac Build-Ids: 2d916a7362ed9347cb8f79464e91456ccba60e3c 62a4157d9182c796f0db9cf8664724e34f813cb8 drwxr-xr-x root/root 0 2024-03-19 17:27 ./ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/lib/debug/.build-id/2d/ -rw-r--r-- root/root 498696 2024-03-19 17:27 ./usr/lib/debug/.build-id/2d/916a7362ed9347cb8f79464e91456ccba60e3c.debug drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/lib/debug/.build-id/62/ -rw-r--r-- root/root 1345064 2024-03-19 17:27 ./usr/lib/debug/.build-id/62/a4157d9182c796f0db9cf8664724e34f813cb8.debug drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 44840 2024-03-19 17:27 ./usr/lib/debug/.dwz/aarch64-linux-gnu/crac.debug drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-19 17:27 ./usr/share/doc/crac-dbgsym -> crac crac_2.5.2+dfsg-6_arm64.deb --------------------------- new Debian package, version 2.0. size 446648 bytes: control archive=3936 bytes. 1505 bytes, 25 lines control 10578 bytes, 119 lines md5sums Package: crac Version: 2.5.2+dfsg-6 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 2302 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgkarrays1t64 (>= 2.1.0+dfsg), libgzstream0 (>= 1.5+dfsg), libhts3t64 (>= 1.17), libjellyfish-2.0-2 (>= 2.3.1), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://crac.gforge.inria.fr/ Description: integrated RNA-Seq read analysis CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis. drwxr-xr-x root/root 0 2024-03-19 17:27 ./ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/bin/ -rwxr-xr-x root/root 463776 2024-03-19 17:27 ./usr/bin/crac -rwxr-xr-x root/root 11120 2024-03-19 17:27 ./usr/bin/crac-client -rwxr-xr-x root/root 201672 2024-03-19 17:27 ./usr/bin/crac-index drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/include/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/include/crac-2.5.2/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/include/crac-2.5.2/kseq/ -rw-r--r-- root/root 12765 2024-03-19 17:27 ./usr/include/crac-2.5.2/kseq/kseq.h drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/doc/crac/ -rw-r--r-- root/root 2004 2015-07-13 14:37 ./usr/share/doc/crac/README.gz -rw-r--r-- root/root 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drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 146 2024-03-19 17:23 ./usr/share/lintian/overrides/crac drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-19 17:27 ./usr/share/man/man1/ -rw-r--r-- root/root 6450 2024-03-19 17:27 ./usr/share/man/man1/crac.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1419 B] Get:5 copy:/<>/apt_archive ./ Packages [1498 B] Fetched 3532 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 13.6 MB of archives. After this operation, 51.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.1.5-1.1 [1241 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.66-1 [34.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-3 [565 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.45.2-1 [895 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-3 [950 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b5 [66.9 kB] Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2+b2 [15.1 kB] Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.64-1 [44.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b3 [121 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.27-1 [98.4 kB] Get:29 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.82-1 [98.9 kB] Get:30 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.64-1 [217 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b3 [36.2 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get:35 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:36 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b2 [128 kB] Get:42 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:43 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b3 [32.5 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b3 [98.1 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b3 [24.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b3 [29.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:61 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:62 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:64 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:67 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:68 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:73 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:74 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:75 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:76 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:77 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:78 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:80 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:81 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:82 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:83 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:84 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:85 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:98 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:99 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:101 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:104 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:106 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:107 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:112 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b2 [57.6 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:114 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:116 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:118 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:120 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:122 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:123 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:124 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:125 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:126 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:127 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:128 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:129 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.6 MB in 0s (80.0 MB/s) Selecting previously unselected package netbase. (Reading database ... 18528 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.1.5-1.1_amd64.deb ... Unpacking openssl (3.1.5-1.1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../006-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.45.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.2-1) ... Selecting previously unselected package gpg. Preparing to unpack .../009-gpg_2.2.40-3_amd64.deb ... Unpacking gpg (2.2.40-3) ... Selecting previously unselected package iso-codes. Preparing to unpack .../010-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../011-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../012-libapt-pkg-perl_0.1.40+b5_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40+b5) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../013-libb-hooks-op-check-perl_0.22-3+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../014-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2+b2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b3_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../020-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../021-libvariable-magic-perl_0.64-1_amd64.deb ... Unpacking libvariable-magic-perl (0.64-1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../022-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libberkeleydb-perl:amd64. Preparing to unpack .../023-libberkeleydb-perl_0.64-2+b3_amd64.deb ... Unpacking libberkeleydb-perl:amd64 (0.64-2+b3) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../024-libcapture-tiny-perl_0.48-2_all.deb ... 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Preparing to unpack .../128-sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:amd64 (1.14-1) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.83-2+b3) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.45.2-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.39-1+b2) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.27-1+b2) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.636-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.1.5-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.27-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for man-db (2.12.0-3+b1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 42880 Build-Time: 51 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 14 Job: crac_2.5.2+dfsg-6 Lintian: pass Machine Architecture: amd64 Package: crac Package-Time: 75 Source-Version: 2.5.2+dfsg-6 Space: 42880 Status: successful Version: 2.5.2+dfsg-6 -------------------------------------------------------------------------------- Finished at 2024-03-27T09:55:46Z Build needed 00:01:15, 42880k disk space