sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | delly 1.1.8-1 (armel) Fri, 24 Oct 2025 22:34:24 +0000 | +==============================================================================+ Package: delly Version: 1.1.8-1 Source Version: 1.1.8-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-b5c81905-bdaf-47cf-921f-992b2166c868' with '<>' I: NOTICE: Log filtering will replace 'build/delly-O6alDc/resolver-JRoFPv' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian unstable InRelease Get:2 http://localhost:3142/debian unstable/main armel Packages [9608 kB] Fetched 9608 kB in 1s (10.2 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3751 kB of source archives. Get:1 http://localhost:3142/debian unstable/main delly 1.1.8-1 (dsc) [2110 B] Get:2 http://localhost:3142/debian unstable/main delly 1.1.8-1 (tar) [3744 kB] Get:3 http://localhost:3142/debian unstable/main delly 1.1.8-1 (diff) [5244 B] Fetched 3751 kB in 1s (4226 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/delly-O6alDc/delly-1.1.8' with '<>' I: NOTICE: Log filtering will replace 'build/delly-O6alDc' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [894 B] Get:5 copy:/<>/apt_archive ./ Packages [937 B] Fetched 2440 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils chrpath comerr-dev:armel cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-14-base:armel gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base icu-devtools intltool-debian krb5-multidev:armel libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libboost-atomic1.83-dev:armel libboost-atomic1.83.0:armel libboost-date-time-dev:armel libboost-date-time1.83-dev:armel libboost-date-time1.83.0:armel libboost-filesystem-dev:armel libboost-filesystem1.83-dev:armel libboost-filesystem1.83.0:armel libboost-iostreams-dev:armel libboost-iostreams1.83-dev:armel libboost-iostreams1.83.0:armel libboost-program-options-dev:armel libboost-program-options1.83-dev:armel libboost-program-options1.83.0:armel libboost-regex1.83-dev:armel libboost-regex1.83.0:armel libboost-serialization1.83-dev:armel libboost-serialization1.83.0:armel libboost-system-dev:armel libboost-system1.83-dev:armel libboost-system1.83.0:armel libboost1.83-dev:armel libbrotli-dev:armel libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libcrypt-dev:armel libcrypt1:armel libcurl3t64-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3t64:armel libdebhelper-perl libdeflate-dev:armel libdeflate0:armel libelf1t64 libevent-2.1-7t64:armel libfakeroot libffi8:armel libfile-stripnondeterminism-perl libgcc-14-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp-dev:armel libgmp10:armel libgmpxx4ldbl:armel libgnutls-dane0t64:armel libgnutls-openssl27t64:armel libgnutls28-dev:armel libgnutls30t64:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libgssrpc4t64:armel libhogweed6t64:armel libhts-dev:armel libhts3t64:armel libhtscodecs2:armel libicu-dev:armel libicu76 libicu76:armel libidn2-0:armel libidn2-dev:armel libk5crypto3:armel libkadm5clnt-mit12:armel libkadm5srv-mit12:armel libkdb5-10t64:armel libkeyutils1:armel libkrb5-3:armel libkrb5-dev:armel libkrb5support0:armel libldap-dev:armel libldap2:armel liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1t64 libnettle8t64:armel libnghttp2-14:armel libnghttp2-dev:armel libnghttp3-9:armel libnghttp3-dev:armel libngtcp2-16:armel libngtcp2-crypto-gnutls-dev:armel libngtcp2-crypto-gnutls8:armel libngtcp2-dev:armel libp11-kit-dev:armel libp11-kit0:armel libpipeline1 libpkgconf3 libpsl-dev:armel libpsl5t64:armel librtmp-dev:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libssh2-1-dev:armel libssh2-1t64:armel libssl-dev:armel libssl3t64:armel libstdc++-14-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtasn1-6:armel libtasn1-6-dev:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunbound8:armel libunistring5 libunistring5:armel libxml2-16 libzstd-dev:armel libzstd1:armel linux-libc-dev-armel-cross m4 man-db nettle-dev:armel pkgconf:armel pkgconf-bin po-debconf sensible-utils zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:armel gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:armel libboost1.83-doc:armel libboost-chrono1.83-dev:armel libboost-container1.83-dev:armel libboost-context1.83-dev:armel libboost-contract1.83-dev:armel libboost-coroutine1.83-dev:armel libboost-exception1.83-dev:armel libboost-fiber1.83-dev:armel libboost-graph-parallel1.83-dev:armel libboost-graph1.83-dev:armel libboost-json1.83-dev:armel libboost-locale1.83-dev:armel libboost-log1.83-dev:armel libboost-math1.83-dev:armel libboost-mpi-python1.83-dev:armel libboost-mpi1.83-dev:armel libboost-nowide1.83-dev:armel libboost-numpy1.83-dev:armel libboost-python1.83-dev:armel libboost-random1.83-dev:armel libboost-stacktrace1.83-dev:armel libboost-test1.83-dev:armel libboost-thread1.83-dev:armel libboost-timer1.83-dev:armel libboost-type-erasure1.83-dev:armel libboost-url1.83-dev:armel libboost-wave1.83-dev:armel libboost1.83-tools-dev:armel libmpfrc++-dev:armel libntl-dev:armel glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel libcurl4-doc:armel libidn-dev:armel gmp-doc:armel libgmp10-doc:armel libmpfr-dev:armel dns-root-data:armel gnutls-bin:armel gnutls-doc:armel krb5-user:armel icu-doc:armel liblzma-doc:armel libnghttp2-doc:armel p11-kit-doc:armel libssl-doc:armel libstdc++-14-doc:armel libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:armel ca-certificates:armel libarchive-cpio-perl krb5-locales:armel libldap-common:armel publicsuffix:armel libsasl2-modules:armel libtasn1-doc:armel libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils chrpath comerr-dev:armel cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-14-base:armel gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base icu-devtools intltool-debian krb5-multidev:armel libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libboost-atomic1.83-dev:armel libboost-atomic1.83.0:armel libboost-date-time-dev:armel libboost-date-time1.83-dev:armel libboost-date-time1.83.0:armel libboost-filesystem-dev:armel libboost-filesystem1.83-dev:armel libboost-filesystem1.83.0:armel libboost-iostreams-dev:armel libboost-iostreams1.83-dev:armel libboost-iostreams1.83.0:armel libboost-program-options-dev:armel libboost-program-options1.83-dev:armel libboost-program-options1.83.0:armel libboost-regex1.83-dev:armel libboost-regex1.83.0:armel libboost-serialization1.83-dev:armel libboost-serialization1.83.0:armel libboost-system-dev:armel libboost-system1.83-dev:armel libboost-system1.83.0:armel libboost1.83-dev:armel libbrotli-dev:armel libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libcrypt-dev:armel libcrypt1:armel libcurl3t64-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3t64:armel libdebhelper-perl libdeflate-dev:armel libdeflate0:armel libelf1t64 libevent-2.1-7t64:armel libfakeroot libffi8:armel libfile-stripnondeterminism-perl libgcc-14-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp-dev:armel libgmp10:armel libgmpxx4ldbl:armel libgnutls-dane0t64:armel libgnutls-openssl27t64:armel libgnutls28-dev:armel libgnutls30t64:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libgssrpc4t64:armel libhogweed6t64:armel libhts-dev:armel libhts3t64:armel libhtscodecs2:armel libicu-dev:armel libicu76 libicu76:armel libidn2-0:armel libidn2-dev:armel libk5crypto3:armel libkadm5clnt-mit12:armel libkadm5srv-mit12:armel libkdb5-10t64:armel libkeyutils1:armel libkrb5-3:armel libkrb5-dev:armel libkrb5support0:armel libldap-dev:armel libldap2:armel liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1t64 libnettle8t64:armel libnghttp2-14:armel libnghttp2-dev:armel libnghttp3-9:armel libnghttp3-dev:armel libngtcp2-16:armel libngtcp2-crypto-gnutls-dev:armel libngtcp2-crypto-gnutls8:armel libngtcp2-dev:armel libp11-kit-dev:armel libp11-kit0:armel libpipeline1 libpkgconf3 libpsl-dev:armel libpsl5t64:armel librtmp-dev:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libssh2-1-dev:armel libssh2-1t64:armel libssl-dev:armel libssl3t64:armel libstdc++-14-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtasn1-6:armel libtasn1-6-dev:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunbound8:armel libunistring5 libunistring5:armel libxml2-16 libzstd-dev:armel libzstd1:armel linux-libc-dev-armel-cross m4 man-db nettle-dev:armel pkgconf:armel pkgconf-bin po-debconf sbuild-build-depends-main-dummy:armel sensible-utils zlib1g:armel zlib1g-dev:armel 0 upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 360 MB of archives. After this operation, 1627 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [980 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.45-8 [1540 kB] Get:18 http://localhost:3142/debian unstable/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get:19 http://localhost:3142/debian unstable/main armel gcc-15-base armel 15.2.0-7 [53.3 kB] Get:20 http://localhost:3142/debian unstable/main armel libgcc-s1 armel 15.2.0-7 [39.0 kB] Get:21 http://localhost:3142/debian unstable/main armel libc6 armel 2.41-12 [2262 kB] Get:22 http://localhost:3142/debian unstable/main armel libcrypt1 armel 1:4.4.38-1 [97.4 kB] Get:23 http://localhost:3142/debian unstable/main armel libcrypt-dev armel 1:4.4.38-1 [127 kB] Get:24 http://localhost:3142/debian unstable/main armel libc6-dev armel 2.41-12 [1362 kB] Get:25 http://localhost:3142/debian unstable/main armel libcom-err2 armel 1.47.2-3+b3 [24.4 kB] Get:26 http://localhost:3142/debian unstable/main armel comerr-dev armel 2.1-1.47.2-3+b3 [56.4 kB] Get:27 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabi-base amd64 15.2.0-4cross1 [53.0 kB] Get:28 http://localhost:3142/debian unstable/main amd64 cpp-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [80.4 MB] Get:29 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:15.2.0-4 [4448 B] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base-ports all 15.2.0-4cross1 [48.4 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libc6-armel-cross all 2.41-11cross1 [942 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armel-cross all 15.2.0-4cross1 [38.9 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libgomp1-armel-cross all 15.2.0-4cross1 [113 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libatomic1-armel-cross all 15.2.0-4cross1 [9472 B] Get:35 http://localhost:3142/debian unstable/main amd64 libasan8-armel-cross all 15.2.0-4cross1 [2590 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libstdc++6-armel-cross all 15.2.0-4cross1 [561 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libubsan1-armel-cross all 15.2.0-4cross1 [1072 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-armel-cross all 15.2.0-4cross1 [755 kB] Get:39 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [88.1 MB] Get:40 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:15.2.0-4 [1456 B] Get:41 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armel-cross all 6.12.38-1cross1 [2430 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libc6-dev-armel-cross all 2.41-11cross1 [1358 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-armel-cross all 15.2.0-4cross1 [2409 kB] Get:44 http://localhost:3142/debian unstable/main amd64 g++-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [85.9 MB] Get:45 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:15.2.0-4 [1204 B] Get:46 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armel all 12.12 [3552 B] Get:47 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get:49 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:52 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:53 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get:54 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.2 [639 kB] Get:57 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:58 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:59 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:60 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:62 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:63 http://localhost:3142/debian unstable/main armel gcc-14-base armel 14.3.0-10 [52.4 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:65 http://localhost:3142/debian unstable/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get:66 http://localhost:3142/debian unstable/main armel libkrb5support0 armel 1.21.3-5 [30.4 kB] Get:67 http://localhost:3142/debian unstable/main armel libk5crypto3 armel 1.21.3-5 [75.3 kB] Get:68 http://localhost:3142/debian unstable/main armel libkeyutils1 armel 1.6.3-6 [8568 B] Get:69 http://localhost:3142/debian unstable/main armel libatomic1 armel 15.2.0-7 [9712 B] Get:70 http://localhost:3142/debian unstable/main armel libzstd1 armel 1.5.7+dfsg-2 [274 kB] Get:71 http://localhost:3142/debian unstable/main armel zlib1g armel 1:1.3.dfsg+really1.3.1-1+b1 [75.3 kB] Get:72 http://localhost:3142/debian unstable/main armel libssl3t64 armel 3.5.4-1 [1952 kB] Get:73 http://localhost:3142/debian unstable/main armel libkrb5-3 armel 1.21.3-5 [282 kB] Get:74 http://localhost:3142/debian unstable/main armel libgssapi-krb5-2 armel 1.21.3-5 [114 kB] Get:75 http://localhost:3142/debian unstable/main armel libgssrpc4t64 armel 1.21.3-5 [52.5 kB] Get:76 http://localhost:3142/debian unstable/main armel libkadm5clnt-mit12 armel 1.21.3-5 [37.6 kB] Get:77 http://localhost:3142/debian unstable/main armel libkdb5-10t64 armel 1.21.3-5 [37.6 kB] Get:78 http://localhost:3142/debian unstable/main armel libkadm5srv-mit12 armel 1.21.3-5 [47.4 kB] Get:79 http://localhost:3142/debian unstable/main armel krb5-multidev armel 1.21.3-5 [126 kB] Get:80 http://localhost:3142/debian unstable/main armel libasan8 armel 15.2.0-7 [2602 kB] Get:81 http://localhost:3142/debian unstable/main armel libgomp1 armel 15.2.0-7 [116 kB] Get:82 http://localhost:3142/debian unstable/main armel libstdc++6 armel 15.2.0-7 [608 kB] Get:83 http://localhost:3142/debian unstable/main armel libubsan1 armel 15.2.0-7 [1072 kB] Get:84 http://localhost:3142/debian unstable/main armel libgcc-14-dev armel 14.3.0-10 [762 kB] Get:85 http://localhost:3142/debian unstable/main armel libstdc++-14-dev armel 14.3.0-10 [2609 kB] Get:86 http://localhost:3142/debian unstable/main armel libboost1.83-dev armel 1.83.0-5 [10.6 MB] Get:87 http://localhost:3142/debian unstable/main armel libboost-atomic1.83.0 armel 1.83.0-5 [233 kB] Get:88 http://localhost:3142/debian unstable/main armel libboost-atomic1.83-dev armel 1.83.0-5 [234 kB] Get:89 http://localhost:3142/debian unstable/main armel libboost-date-time1.83.0 armel 1.83.0-5 [231 kB] Get:90 http://localhost:3142/debian unstable/main armel libboost-serialization1.83.0 armel 1.83.0-5 [315 kB] Get:91 http://localhost:3142/debian unstable/main armel libboost-serialization1.83-dev armel 1.83.0-5 [384 kB] Get:92 http://localhost:3142/debian unstable/main armel libboost-date-time1.83-dev armel 1.83.0-5 [239 kB] Get:93 http://localhost:3142/debian unstable/main armel libboost-date-time-dev armel 1.83.0.2+b2 [3588 B] Get:94 http://localhost:3142/debian unstable/main armel libboost-filesystem1.83.0 armel 1.83.0-5 [271 kB] Get:95 http://localhost:3142/debian unstable/main armel libboost-system1.83.0 armel 1.83.0-5 [231 kB] Get:96 http://localhost:3142/debian unstable/main armel libboost-system1.83-dev armel 1.83.0-5 [232 kB] Get:97 http://localhost:3142/debian unstable/main armel libboost-filesystem1.83-dev armel 1.83.0-5 [286 kB] Get:98 http://localhost:3142/debian unstable/main armel libboost-filesystem-dev armel 1.83.0.2+b2 [3616 B] Get:99 http://localhost:3142/debian unstable/main armel libboost-regex1.83.0 armel 1.83.0-5 [306 kB] Get:100 http://localhost:3142/debian unstable/main armel libicu76 armel 76.1-4 [9332 kB] Get:101 http://localhost:3142/debian unstable/main armel libicu-dev armel 76.1-4 [10.4 MB] Get:102 http://localhost:3142/debian unstable/main armel libboost-regex1.83-dev armel 1.83.0-5 [335 kB] Get:103 http://localhost:3142/debian unstable/main armel libbz2-1.0 armel 1.0.8-6 [36.3 kB] Get:104 http://localhost:3142/debian unstable/main armel liblzma5 armel 5.8.1-2 [297 kB] Get:105 http://localhost:3142/debian unstable/main armel libboost-iostreams1.83.0 armel 1.83.0-5 [250 kB] Get:106 http://localhost:3142/debian unstable/main armel libboost-iostreams1.83-dev armel 1.83.0-5 [261 kB] Get:107 http://localhost:3142/debian unstable/main armel libboost-iostreams-dev armel 1.83.0.2+b2 [3568 B] Get:108 http://localhost:3142/debian unstable/main armel libboost-program-options1.83.0 armel 1.83.0-5 [324 kB] Get:109 http://localhost:3142/debian unstable/main armel libboost-program-options1.83-dev armel 1.83.0-5 [367 kB] Get:110 http://localhost:3142/debian unstable/main armel libboost-program-options-dev armel 1.83.0.2+b2 [3604 B] Get:111 http://localhost:3142/debian unstable/main armel libboost-system-dev armel 1.83.0.2+b2 [3724 B] Get:112 http://localhost:3142/debian unstable/main armel libbrotli1 armel 1.1.0-2+b7 [302 kB] Get:113 http://localhost:3142/debian unstable/main armel libbrotli-dev armel 1.1.0-2+b7 [301 kB] Get:114 http://localhost:3142/debian unstable/main armel libbz2-dev armel 1.0.8-6 [28.4 kB] Get:115 http://localhost:3142/debian unstable/main armel libnghttp3-9 armel 1.12.0-1 [60.2 kB] Get:116 http://localhost:3142/debian unstable/main armel libngtcp2-16 armel 1.16.0-1 [129 kB] Get:117 http://localhost:3142/debian unstable/main armel libgmp10 armel 2:6.3.0+dfsg-5 [508 kB] Get:118 http://localhost:3142/debian unstable/main armel libnettle8t64 armel 3.10.2-1 [311 kB] Get:119 http://localhost:3142/debian unstable/main armel libhogweed6t64 armel 3.10.2-1 [322 kB] Get:120 http://localhost:3142/debian unstable/main armel libunistring5 armel 1.3-2 [429 kB] Get:121 http://localhost:3142/debian unstable/main armel libidn2-0 armel 2.3.8-4 [105 kB] Get:122 http://localhost:3142/debian unstable/main armel libffi8 armel 3.5.2-2 [20.4 kB] Get:123 http://localhost:3142/debian unstable/main armel libp11-kit0 armel 0.25.9-2 [420 kB] Get:124 http://localhost:3142/debian unstable/main armel libtasn1-6 armel 4.20.0-2 [43.8 kB] Get:125 http://localhost:3142/debian unstable/main armel libgnutls30t64 armel 3.8.10-2 [1386 kB] Get:126 http://localhost:3142/debian unstable/main armel libdb5.3t64 armel 5.3.28+dfsg2-10 [589 kB] Get:127 http://localhost:3142/debian unstable/main armel libsasl2-modules-db armel 2.1.28+dfsg1-10 [18.4 kB] Get:128 http://localhost:3142/debian unstable/main armel libsasl2-2 armel 2.1.28+dfsg1-10 [50.5 kB] Get:129 http://localhost:3142/debian unstable/main armel libldap2 armel 2.6.10+dfsg-1 [167 kB] Get:130 http://localhost:3142/debian unstable/main armel libnghttp2-14 armel 1.64.0-1.1+b1 [63.3 kB] Get:131 http://localhost:3142/debian unstable/main armel libngtcp2-crypto-gnutls8 armel 1.16.0-1 [22.0 kB] Get:132 http://localhost:3142/debian unstable/main armel libpsl5t64 armel 0.21.2-1.1+b1 [55.9 kB] Get:133 http://localhost:3142/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-3 [53.4 kB] Get:134 http://localhost:3142/debian unstable/main armel libssh2-1t64 armel 1.11.1-1 [226 kB] Get:135 http://localhost:3142/debian unstable/main armel libcurl3t64-gnutls armel 8.17.0~rc2-1 [339 kB] Get:136 http://localhost:3142/debian unstable/main armel libevent-2.1-7t64 armel 2.1.12-stable-10+b1 [165 kB] Get:137 http://localhost:3142/debian unstable/main armel libunbound8 armel 1.24.1-1 [546 kB] Get:138 http://localhost:3142/debian unstable/main armel libgnutls-dane0t64 armel 3.8.10-2 [450 kB] Get:139 http://localhost:3142/debian unstable/main armel libgnutls-openssl27t64 armel 3.8.10-2 [449 kB] Get:140 http://localhost:3142/debian unstable/main armel libidn2-dev armel 2.3.8-4 [98.6 kB] Get:141 http://localhost:3142/debian unstable/main armel libp11-kit-dev armel 0.25.9-2 [220 kB] Get:142 http://localhost:3142/debian unstable/main armel libtasn1-6-dev armel 4.20.0-2 [93.4 kB] Get:143 http://localhost:3142/debian unstable/main armel libgmpxx4ldbl armel 2:6.3.0+dfsg-5 [328 kB] Get:144 http://localhost:3142/debian unstable/main armel libgmp-dev armel 2:6.3.0+dfsg-5 [590 kB] Get:145 http://localhost:3142/debian unstable/main armel nettle-dev armel 3.10.2-1 [1316 kB] Get:146 http://localhost:3142/debian unstable/main armel libgnutls28-dev armel 3.8.10-2 [1354 kB] Get:147 http://localhost:3142/debian unstable/main armel libkrb5-dev armel 1.21.3-5 [16.1 kB] Get:148 http://localhost:3142/debian unstable/main armel libldap-dev armel 2.6.10+dfsg-1 [286 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:150 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:151 http://localhost:3142/debian unstable/main armel pkgconf armel 1.8.1-4 [26.1 kB] Get:152 http://localhost:3142/debian unstable/main armel libnghttp2-dev armel 1.64.0-1.1+b1 [103 kB] Get:153 http://localhost:3142/debian unstable/main armel libnghttp3-dev armel 1.12.0-1 [87.4 kB] Get:154 http://localhost:3142/debian unstable/main armel libngtcp2-crypto-gnutls-dev armel 1.16.0-1 [22.9 kB] Get:155 http://localhost:3142/debian unstable/main armel libngtcp2-dev armel 1.16.0-1 [187 kB] Get:156 http://localhost:3142/debian unstable/main armel libpsl-dev armel 0.21.2-1.1+b1 [77.0 kB] Get:157 http://localhost:3142/debian unstable/main armel zlib1g-dev armel 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get:158 http://localhost:3142/debian unstable/main armel librtmp-dev armel 2.4+20151223.gitfa8646d.1-3 [63.4 kB] Get:159 http://localhost:3142/debian unstable/main armel libssl-dev armel 3.5.4-1 [2556 kB] Get:160 http://localhost:3142/debian unstable/main armel libssh2-1-dev armel 1.11.1-1 [377 kB] Get:161 http://localhost:3142/debian unstable/main armel libzstd-dev armel 1.5.7+dfsg-2 [341 kB] Get:162 http://localhost:3142/debian unstable/main armel libcurl4-gnutls-dev armel 8.17.0~rc2-1 [471 kB] Get:163 http://localhost:3142/debian unstable/main armel libdeflate0 armel 1.23-2 [33.8 kB] Get:164 http://localhost:3142/debian unstable/main armel libdeflate-dev armel 1.23-2 [42.0 kB] Get:165 http://localhost:3142/debian unstable/main armel libhtscodecs2 armel 1.6.1-2 [64.0 kB] Get:166 http://localhost:3142/debian unstable/main armel libhts3t64 armel 1.22.1+ds2-1 [411 kB] Get:167 http://localhost:3142/debian unstable/main armel liblzma-dev armel 5.8.1-2 [338 kB] Get:168 http://localhost:3142/debian unstable/main armel libhts-dev armel 1.22.1+ds2-1 [1677 kB] Preconfiguring packages ... Fetched 360 MB in 2s (207 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12903 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../029-libc6-armel-cross_2.41-11cross1_all.deb ... Unpacking libc6-armel-cross (2.41-11cross1) ... Selecting previously unselected package libgcc-s1-armel-cross. Preparing to unpack .../030-libgcc-s1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgcc-s1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../031-libgomp1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgomp1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../032-libatomic1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libatomic1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libasan8-armel-cross. Preparing to unpack .../033-libasan8-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libasan8-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../034-libstdc++6-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libstdc++6-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../035-libubsan1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libubsan1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libgcc-15-dev-armel-cross. Preparing to unpack .../036-libgcc-15-dev-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgcc-15-dev-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package gcc-15-arm-linux-gnueabi. Preparing to unpack .../037-gcc-15-arm-linux-gnueabi_15.2.0-4cross1_amd64.deb ... Unpacking gcc-15-arm-linux-gnueabi (15.2.0-4cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../038-gcc-arm-linux-gnueabi_4%3a15.2.0-4_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:15.2.0-4) ... 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Unpacking g++-arm-linux-gnueabi (4:15.2.0-4) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../044-crossbuild-essential-armel_12.12_all.deb ... Unpacking crossbuild-essential-armel (12.12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../045-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../046-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../047-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../048-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. 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Selecting previously unselected package libngtcp2-dev:armel. Preparing to unpack .../153-libngtcp2-dev_1.16.0-1_armel.deb ... Unpacking libngtcp2-dev:armel (1.16.0-1) ... Selecting previously unselected package libpsl-dev:armel. Preparing to unpack .../154-libpsl-dev_0.21.2-1.1+b1_armel.deb ... Unpacking libpsl-dev:armel (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../155-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armel.deb ... Unpacking zlib1g-dev:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:armel. Preparing to unpack .../156-librtmp-dev_2.4+20151223.gitfa8646d.1-3_armel.deb ... Unpacking librtmp-dev:armel (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssl-dev:armel. Preparing to unpack .../157-libssl-dev_3.5.4-1_armel.deb ... Unpacking libssl-dev:armel (3.5.4-1) ... Selecting previously unselected package libssh2-1-dev:armel. 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Selecting previously unselected package libhts3t64:armel. Preparing to unpack .../164-libhts3t64_1.22.1+ds2-1_armel.deb ... Unpacking libhts3t64:armel (1.22.1+ds2-1) ... Selecting previously unselected package liblzma-dev:armel. Preparing to unpack .../165-liblzma-dev_5.8.1-2_armel.deb ... Unpacking liblzma-dev:armel (5.8.1-2) ... Selecting previously unselected package libhts-dev:armel. Preparing to unpack .../166-libhts-dev_1.22.1+ds2-1_armel.deb ... Unpacking libhts-dev:armel (1.22.1+ds2-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../167-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up binutils-arm-linux-gnueabi (2.45-8) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libboost-date-time1.83.0:armel (1.83.0-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:armel (14.3.0-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-0.2) ... Setting up libdebhelper-perl (13.28) ... Setting up gcc-15-cross-base-ports (15.2.0-4cross1) ... Setting up libboost-system1.83.0:armel (1.83.0-5) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libfakeroot:amd64 (1.37.1.2-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up linux-libc-dev-armel-cross (6.12.38-1cross1) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up gcc-15-arm-linux-gnueabi-base:amd64 (15.2.0-4cross1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up autoconf (2.72-3.1) ... Setting up libc6-armel-cross (2.41-11cross1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libc6-dev-armel-cross (2.41-11cross1) ... Setting up gcc-15-base:armel (15.2.0-7) ... Setting up cpp-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up chrpath (0.18-1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgomp1-armel-cross (15.2.0-4cross1) ... Setting up libtool (2.5.4-7) ... Setting up libgcc-s1-armel-cross (15.2.0-4cross1) ... Setting up libstdc++6-armel-cross (15.2.0-4cross1) ... Setting up libatomic1-armel-cross (15.2.0-4cross1) ... Setting up pkgconf:armel (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up cpp-arm-linux-gnueabi (4:15.2.0-4) ... Setting up libubsan1-armel-cross (15.2.0-4cross1) ... Setting up icu-devtools (76.1-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libasan8-armel-cross (15.2.0-4cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up debhelper (13.28) ... Setting up libstdc++-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-arm-linux-gnueabi (4:15.2.0-4) ... Setting up g++-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up g++-arm-linux-gnueabi (4:15.2.0-4) ... Setting up crossbuild-essential-armel (12.12) ... Setting up libgcc-s1:armel (15.2.0-7) ... Setting up libc6:armel (2.41-12) ... Setting up libnghttp3-9:armel (1.12.0-1) ... Setting up libnghttp3-dev:armel (1.12.0-1) ... Setting up libdb5.3t64:armel (5.3.28+dfsg2-10) ... Setting up libffi8:armel (3.5.2-2) ... Setting up libasan8:armel (15.2.0-7) ... Setting up libtasn1-6:armel (4.20.0-2) ... Setting up libngtcp2-16:armel (1.16.0-1) ... Setting up libbz2-1.0:armel (1.0.8-6) ... Setting up libtasn1-6-dev:armel (4.20.0-2) ... Setting up libstdc++6:armel (15.2.0-7) ... Setting up libhtscodecs2:armel (1.6.1-2) ... Setting up libboost-program-options1.83.0:armel (1.83.0-5) ... Setting up libzstd1:armel (1.5.7+dfsg-2) ... Setting up libkeyutils1:armel (1.6.3-6) ... Setting up libzstd-dev:armel (1.5.7+dfsg-2) ... Setting up liblzma5:armel (5.8.1-2) ... Setting up libboost-regex1.83.0:armel (1.83.0-5) ... Setting up libbrotli1:armel (1.1.0-2+b7) ... Setting up libnghttp2-14:armel (1.64.0-1.1+b1) ... Setting up libdeflate0:armel (1.23-2) ... Setting up libevent-2.1-7t64:armel (2.1.12-stable-10+b1) ... Setting up zlib1g:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:armel (1:4.4.38-1) ... Setting up libcom-err2:armel (1.47.2-3+b3) ... Setting up libngtcp2-dev:armel (1.16.0-1) ... Setting up libboost-filesystem1.83.0:armel (1.83.0-5) ... Setting up libgomp1:armel (15.2.0-7) ... Setting up libkrb5support0:armel (1.21.3-5) ... Setting up libsasl2-modules-db:armel (2.1.28+dfsg1-10) ... Setting up libboost-atomic1.83.0:armel (1.83.0-5) ... Setting up libboost-serialization1.83.0:armel (1.83.0-5) ... Setting up libnettle8t64:armel (3.10.2-1) ... Setting up libboost-iostreams1.83.0:armel (1.83.0-5) ... Setting up libgmp10:armel (2:6.3.0+dfsg-5) ... Setting up libp11-kit0:armel (0.25.9-2) ... Setting up libunistring5:armel (1.3-2) ... Setting up libatomic1:armel (15.2.0-7) ... Setting up libk5crypto3:armel (1.21.3-5) ... Setting up liblzma-dev:armel (5.8.1-2) ... Setting up libubsan1:armel (15.2.0-7) ... Setting up libhogweed6t64:armel (3.10.2-1) ... Setting up libcrypt-dev:armel (1:4.4.38-1) ... Setting up libc6-dev:armel (2.41-12) ... Setting up libicu76:armel (76.1-4) ... Setting up libgcc-14-dev:armel (14.3.0-10) ... Setting up libdeflate-dev:armel (1.23-2) ... Setting up libstdc++-14-dev:armel (14.3.0-10) ... Setting up libicu-dev:armel (76.1-4) ... Setting up libbrotli-dev:armel (1.1.0-2+b7) ... Setting up libp11-kit-dev:armel (0.25.9-2) ... Setting up libbz2-dev:armel (1.0.8-6) ... Setting up libnghttp2-dev:armel (1.64.0-1.1+b1) ... Setting up libboost1.83-dev:armel (1.83.0-5) ... Setting up libssl3t64:armel (3.5.4-1) ... Setting up libboost-program-options1.83-dev:armel (1.83.0-5) ... Setting up libboost-serialization1.83-dev:armel (1.83.0-5) ... Setting up libidn2-0:armel (2.3.8-4) ... Setting up libunbound8:armel (1.24.1-1) ... Setting up libgmpxx4ldbl:armel (2:6.3.0+dfsg-5) ... Setting up libboost-program-options-dev:armel (1.83.0.2+b2) ... Setting up libboost-date-time1.83-dev:armel (1.83.0-5) ... Setting up comerr-dev:armel (2.1-1.47.2-3+b3) ... Setting up libssl-dev:armel (3.5.4-1) ... Setting up libboost-regex1.83-dev:armel (1.83.0-5) ... Setting up libboost-date-time-dev:armel (1.83.0.2+b2) ... Setting up libidn2-dev:armel (2.3.8-4) ... Setting up libsasl2-2:armel (2.1.28+dfsg1-10) ... Setting up libboost-atomic1.83-dev:armel (1.83.0-5) ... Setting up zlib1g-dev:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libkrb5-3:armel (1.21.3-5) ... Setting up libboost-system1.83-dev:armel (1.83.0-5) ... Setting up libssh2-1t64:armel (1.11.1-1) ... Setting up libldap2:armel (2.6.10+dfsg-1) ... Setting up libgnutls30t64:armel (3.8.10-2) ... Setting up libgnutls-openssl27t64:armel (3.8.10-2) ... Setting up libgmp-dev:armel (2:6.3.0+dfsg-5) ... Setting up nettle-dev:armel (3.10.2-1) ... Setting up libboost-iostreams1.83-dev:armel (1.83.0-5) ... Setting up libboost-system-dev:armel (1.83.0.2+b2) ... Setting up libpsl5t64:armel (0.21.2-1.1+b1) ... Setting up libboost-filesystem1.83-dev:armel (1.83.0-5) ... Setting up libboost-iostreams-dev:armel (1.83.0.2+b2) ... Setting up libpsl-dev:armel (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:armel (3.8.10-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-3) ... Setting up libldap-dev:armel (2.6.10+dfsg-1) ... Setting up libgssapi-krb5-2:armel (1.21.3-5) ... Setting up libssh2-1-dev:armel (1.11.1-1) ... Setting up libboost-filesystem-dev:armel (1.83.0.2+b2) ... Setting up libngtcp2-crypto-gnutls8:armel (1.16.0-1) ... Setting up libgnutls28-dev:armel (3.8.10-2) ... Setting up libcurl3t64-gnutls:armel (8.17.0~rc2-1) ... Setting up libngtcp2-crypto-gnutls-dev:armel (1.16.0-1) ... Setting up libgssrpc4t64:armel (1.21.3-5) ... Setting up librtmp-dev:armel (2.4+20151223.gitfa8646d.1-3) ... Setting up libhts3t64:armel (1.22.1+ds2-1) ... Setting up libkadm5clnt-mit12:armel (1.21.3-5) ... Setting up libkdb5-10t64:armel (1.21.3-5) ... Setting up libkadm5srv-mit12:armel (1.21.3-5) ... Setting up krb5-multidev:armel (1.21.3-5) ... Setting up libkrb5-dev:armel (1.21.3-5) ... Setting up libcurl4-gnutls-dev:armel (8.17.0~rc2-1) ... Setting up libhts-dev:armel (1.22.1+ds2-1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-15_15.2.0-7 gcc-15_15.2.0-7 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-10 libstdc++-15-dev_15.2.0-7 libstdc++-15-dev-armel-cross_15.2.0-4cross1 libstdc++6_15.2.0-7 libstdc++6-armel-cross_15.2.0-4cross1 linux-libc-dev_6.16.12-2 Package versions: apt_3.1.9 apt-utils_3.1.9 autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-8 binutils-arm-linux-gnueabi_2.45-8 binutils-common_2.45-8 binutils-x86-64-linux-gnu_2.45-8 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 chrpath_0.18-1 comerr-dev_2.1-1.47.2-3+b3 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-7 cpp-15-arm-linux-gnueabi_15.2.0-4cross1 cpp-15-x86-64-linux-gnu_15.2.0-7 cpp-arm-linux-gnueabi_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-armel_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-7 g++-15-arm-linux-gnueabi_15.2.0-4cross1 g++-15-x86-64-linux-gnu_15.2.0-7 g++-arm-linux-gnueabi_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-14-base_14.3.0-10 gcc-15_15.2.0-7 gcc-15-arm-linux-gnueabi_15.2.0-4cross1 gcc-15-arm-linux-gnueabi-base_15.2.0-4cross1 gcc-15-base_15.2.0-7 gcc-15-cross-base-ports_15.2.0-4cross1 gcc-15-x86-64-linux-gnu_15.2.0-7 gcc-arm-linux-gnueabi_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 icu-devtools_76.1-4 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.9 libarchive-zip-perl_1.68-1 libasan8_15.2.0-7 libasan8-armel-cross_15.2.0-4cross1 libatomic1_15.2.0-7 libatomic1-armel-cross_15.2.0-4cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-8 libblkid1_2.41.2-4 libboost-atomic1.83-dev_1.83.0-5 libboost-atomic1.83.0_1.83.0-5 libboost-date-time-dev_1.83.0.2+b2 libboost-date-time1.83-dev_1.83.0-5 libboost-date-time1.83.0_1.83.0-5 libboost-filesystem-dev_1.83.0.2+b2 libboost-filesystem1.83-dev_1.83.0-5 libboost-filesystem1.83.0_1.83.0-5 libboost-iostreams-dev_1.83.0.2+b2 libboost-iostreams1.83-dev_1.83.0-5 libboost-iostreams1.83.0_1.83.0-5 libboost-program-options-dev_1.83.0.2+b2 libboost-program-options1.83-dev_1.83.0-5 libboost-program-options1.83.0_1.83.0-5 libboost-regex1.83-dev_1.83.0-5 libboost-regex1.83.0_1.83.0-5 libboost-serialization1.83-dev_1.83.0-5 libboost-serialization1.83.0_1.83.0-5 libboost-system-dev_1.83.0.2+b2 libboost-system1.83-dev_1.83.0-5 libboost-system1.83.0_1.83.0-5 libboost1.83-dev_1.83.0-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-armel-cross_2.41-11cross1 libc6-dev_2.41-12 libc6-dev-armel-cross_2.41-11cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-7 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-8 libctf0_2.45-8 libcurl3t64-gnutls_8.17.0~rc2-1 libcurl4-gnutls-dev_8.17.0~rc2-1 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libevent-2.1-7t64_2.1.12-stable-10+b1 libfakeroot_1.37.1.2-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-14-dev_14.3.0-10 libgcc-15-dev_15.2.0-7 libgcc-15-dev-armel-cross_15.2.0-4cross1 libgcc-s1_15.2.0-7 libgcc-s1-armel-cross_15.2.0-4cross1 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp-dev_2:6.3.0+dfsg-5 libgmp10_2:6.3.0+dfsg-5 libgmpxx4ldbl_2:6.3.0+dfsg-5 libgnutls-dane0t64_3.8.10-2 libgnutls-openssl27t64_3.8.10-2 libgnutls28-dev_3.8.10-2 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-7 libgomp1-armel-cross_15.2.0-4cross1 libgprofng0_2.45-8 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.2-1 libhts-dev_1.22.1+ds2-1 libhts3t64_1.22.1+ds2-1 libhtscodecs2_1.6.1-2 libhwasan0_15.2.0-7 libicu-dev_76.1-4 libicu76_76.1-4 libidn2-0_2.3.8-4 libidn2-dev_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-7 libjansson4_2.14-2+b3 libk5crypto3_1.21.3-5 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https://github.com/dellytools/delly Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/delly Vcs-Git: https://salsa.debian.org/med-team/delly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper Package-List: delly deb science optional arch=any Checksums-Sha1: cf08c2c461916e0c2ed3e0e156a133ed141ac4db 3743720 delly_1.1.8.orig.tar.xz 85b866350db703acd3f9193450034d51a1fb790d 5244 delly_1.1.8-1.debian.tar.xz Checksums-Sha256: 011e6a2a1e2bfcddd3e909ab38974b4220b69f308ef6049420e12112fe967bd3 3743720 delly_1.1.8.orig.tar.xz b3feab4ff9e3654487aafb8836a29703a40ac172d1bf2b343464a3738139e48f 5244 delly_1.1.8-1.debian.tar.xz Files: d803b6a94d7f64c179b7feda0f25679c 3743720 delly_1.1.8.orig.tar.xz d4a36fee1946cb9cca003d1109ccbf5c 5244 delly_1.1.8-1.debian.tar.xz -----BEGIN PGP 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dpkg-source: info: unpacking delly_1.1.8.orig.tar.xz dpkg-source: info: unpacking delly_1.1.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.Sy6uqiKcVk/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-b5c81905-bdaf-47cf-921f-992b2166c868 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/<>' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j1 INSTALL="install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/<>' arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/pow.hpp:16, from src/delly.h:19, from src/delly.cpp:18: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from src/util.h:15, from src/delly.h:32: src/tags.h:76:32: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/string:51, from /usr/arm-linux-gnueabi/include/c++/15/bits/locale_classes.h:42, from /usr/arm-linux-gnueabi/include/c++/15/bits/ios_base.h:43, from /usr/arm-linux-gnueabi/include/c++/15/ios:46, from /usr/arm-linux-gnueabi/include/c++/15/bits/ostream.h:43, from /usr/arm-linux-gnueabi/include/c++/15/ostream:42, from /usr/arm-linux-gnueabi/include/c++/15/iostream:43, from src/delly.cpp:3: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:61:33: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 61 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:68:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 68 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:33, from src/delly.cpp:26: src/gfa.h:43:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 43 | struct SortLinks : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:34: src/gaf.h:41:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct SortAlignRecord : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:27: src/markdup.h:62:37: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 62 | struct SortSVEvents : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:28: src/compvcf.h:65:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 65 | struct SortCompSVRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/junction.h:16: src/assemble.h: In instantiation of ‘void torali::consensusWfa(const TAlign&, std::string&) [with TAlign = boost::multi_array; std::string = std::__cxx11::basic_string]’: src/assemble.h:703:19: required from ‘int torali::msaWfa(const TConfig&, TSplitReadSet&, std::string&, const std::string&, const std::string&) [with TConfig = TeguaConfig; TSplitReadSet = std::vector >; std::string = std::__cxx11::basic_string]’ 703 | consensusWfa(align, alignStr); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ src/assemble.h:866:12: required from ‘void torali::assemble(const TConfig&, const TValidRegion&, std::vector&, TSRStore&) [with TConfig = TeguaConfig; TValidRegion = std::vector >; TSRStore = std::vector, std::vector > >]’ 866 | msaWfa(c, seqStore[svid], svs[svid].consensus, prefix, suffix); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/tegua.h:113:14: required from ‘int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig; int32_t = int]’ 113 | assemble(c, validRegions, svc, srStore); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/tegua.h:383:19: required from here 383 | return runTegua(c); | ~~~~~~~~^~~ src/assemble.h:273:17: warning: comparison of integer expressions of different signedness: ‘TAIndex’ {aka ‘int’} and ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 273 | if (j < readStart[i]) readStart[i] = j; | ~~^~~~~~~~~~~~ src/assemble.h:274:17: warning: comparison of integer expressions of different signedness: ‘TAIndex’ {aka ‘int’} and ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 274 | if (j > readEnd[i]) readEnd[i] = j; | ~~^~~~~~~~~~ src/assemble.h:284:16: warning: comparison of integer expressions of different signedness: ‘TAIndex’ {aka ‘int’} and ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 284 | if ((j >= readStart[i]) && (j <= readEnd[i])) { | ~~~^~~~~~~~~~~~~~~~ src/assemble.h:284:39: warning: comparison of integer expressions of different signedness: ‘TAIndex’ {aka ‘int’} and ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 284 | if ((j >= readStart[i]) && (j <= readEnd[i])) { | ~~~^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algobase.h:71, from /usr/arm-linux-gnueabi/include/c++/15/string:53: /usr/arm-linux-gnueabi/include/c++/15/bits/predefined_ops.h: In function ‘bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = torali::SortCompSVRecord]’: /usr/arm-linux-gnueabi/include/c++/15/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 157 | operator()(_Iterator1 __it1, _Iterator2 __it2) | ^~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/15/algorithm:63, from /usr/include/boost/move/algorithm.hpp:31, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_set.hpp:21, from /usr/include/boost/unordered_set.hpp:17, from /usr/include/boost/graph/adjacency_list.hpp:20, from src/delly.h:8: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1751 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1771 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1751 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1771 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:61: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = torali::CompSVRecord; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1877 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1890:38: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:95:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 95 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:102:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 102 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = torali::CNV; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1877 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = torali::SortCompSVRecord]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘int torali::compvcfRun(CompvcfConfig&)’ at src/compvcf.h:358:9: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1906 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1907 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1908 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1909:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = torali::SortCompSVRecord]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘int torali::compvcfRun(CompvcfConfig&)’ at src/compvcf.h:358:9: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1818 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1823 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = torali::SortCompSVRecord]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘int torali::compvcfRun(CompvcfConfig&)’ at src/compvcf.h:359:9: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1906 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1907 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1908 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1909:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = torali::SortCompSVRecord]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘int torali::compvcfRun(CompvcfConfig&)’ at src/compvcf.h:359:9: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1818 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1823 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/vector:68, from /usr/include/boost/graph/adjacency_list.hpp:16: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]’, inlined from ‘int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]’ at src/asmode.h:399:26, inlined from ‘int torali::asmode(int, char**)’ at src/asmode.h:559:17: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/vector:74: /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc: In function ‘int torali::asmode(int, char**)’: /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc:652:5: note: by argument 4 of type ‘const std::vector::value_type&’ {aka ‘const torali::ReadCount&’} to ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]’ declared here 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:399:39: note: ‘’ declared here 399 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]’, inlined from ‘void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]’ at src/coverage.h:265:30: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc: In function ‘void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc:652:5: note: by argument 4 of type ‘const std::vector::value_type&’ {aka ‘const torali::ReadCount&’} to ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]’ declared here 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: ‘’ declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]’, inlined from ‘int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]’ at src/tegua.h:166:26: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc: In function ‘int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]’: /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc:652:5: note: by argument 4 of type ‘const std::vector::value_type&’ {aka ‘const torali::ReadCount&’} to ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]’ declared here 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:166:39: note: ‘’ declared here 166 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = torali::SortCNVs]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘int32_t torali::bamCount(const TConfig&, const LibraryInfo&, const std::vector&, const std::pair&) [with TConfig = CountDNAConfig]’ at src/coral.h:433:9: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1906 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1907 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1908 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1909:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = torali::SortCNVs]’ at /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:4874:18, inlined from ‘int32_t torali::bamCount(const TConfig&, const LibraryInfo&, const std::vector&, const std::pair&) [with TConfig = CountDNAConfig]’ at src/coral.h:433:9: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1818 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1823 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>' chrpath -d src/delly make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' # avoiding redundant compile of delly make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/delly/usr/bin/delly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'delly' in '../delly_1.1.8-1_armel.deb'. dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.8-1_armel.deb'. dpkg-genbuildinfo --build=any -O../delly_1.1.8-1_armel.buildinfo dpkg-genchanges --build=any -O../delly_1.1.8-1_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-24T22:36:13Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ --------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ delly_1.1.8-1_armel.changes: ---------------------------- Format: 1.8 Date: Thu, 12 Oct 2023 14:40:44 +0000 Source: delly Binary: delly delly-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.1.8-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: delly - Structural variant discovery by read analysis Changes: delly (1.1.8-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 5730fd7d7d9b6f1a5fbabd86b14deada2b936195 6268884 delly-dbgsym_1.1.8-1_armel.deb 7399c30e1e1a64fa6ff59a24aa44a130c1134028 7812 delly_1.1.8-1_armel.buildinfo dd511990dbc1dc74e01ed7b0deea66753f3d0f01 338976 delly_1.1.8-1_armel.deb Checksums-Sha256: f53e9f2367156e358f5f15fa838a4e59c7e179713a18611c793ce001269303b7 6268884 delly-dbgsym_1.1.8-1_armel.deb 23c39699b4f3fd6fd3a9f01e3266e734ddc3659f523ffabbbf3c05d555a8c3b4 7812 delly_1.1.8-1_armel.buildinfo 3f6ef67df09c8c96b24929da4b912c0c0ee5ac42048611d6d3f556b5ef79e91b 338976 delly_1.1.8-1_armel.deb Files: 90ef3d85c6636b923d2c21e7e077d4c2 6268884 debug optional delly-dbgsym_1.1.8-1_armel.deb 6dfe8249e885b3d969bce11ff733be52 7812 science optional delly_1.1.8-1_armel.buildinfo b5a542ba29d2fc6581e053785895e289 338976 science optional delly_1.1.8-1_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: delly Binary: delly delly-dbgsym Architecture: armel Version: 1.1.8-1 Checksums-Md5: 90ef3d85c6636b923d2c21e7e077d4c2 6268884 delly-dbgsym_1.1.8-1_armel.deb b5a542ba29d2fc6581e053785895e289 338976 delly_1.1.8-1_armel.deb Checksums-Sha1: 5730fd7d7d9b6f1a5fbabd86b14deada2b936195 6268884 delly-dbgsym_1.1.8-1_armel.deb dd511990dbc1dc74e01ed7b0deea66753f3d0f01 338976 delly_1.1.8-1_armel.deb Checksums-Sha256: f53e9f2367156e358f5f15fa838a4e59c7e179713a18611c793ce001269303b7 6268884 delly-dbgsym_1.1.8-1_armel.deb 3f6ef67df09c8c96b24929da4b912c0c0ee5ac42048611d6d3f556b5ef79e91b 338976 delly_1.1.8-1_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 24 Oct 2025 22:36:12 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), binutils (= 2.45-8), binutils-common (= 2.45-8), binutils-x86-64-linux-gnu (= 2.45-8), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), chrpath (= 0.18-1), comerr-dev (= 2.1-1.47.2-3+b3), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-7), cpp-15-x86-64-linux-gnu (= 15.2.0-7), cpp-x86-64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-7), g++-15-x86-64-linux-gnu (= 15.2.0-7), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-14-base (= 14.3.0-10), gcc-15 (= 15.2.0-7), gcc-15-base (= 15.2.0-7), gcc-15-x86-64-linux-gnu (= 15.2.0-7), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), icu-devtools (= 76.1-4), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), 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libboost-system1.83.0 (= 1.83.0-5), libboost1.83-dev (= 1.83.0-5), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-7), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-8), libctf0 (= 2.45-8), libcurl3t64-gnutls (= 8.17.0~rc2-1), libcurl4-gnutls-dev (= 8.17.0~rc2-1), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.28), libdeflate-dev (= 1.23-2), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.193-3), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libffi8 (= 3.5.2-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-14-dev (= 14.3.0-10), libgcc-15-dev (= 15.2.0-7), libgcc-s1 (= 15.2.0-7), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgmp-dev (= 2:6.3.0+dfsg-5), libgmp10 (= 2:6.3.0+dfsg-5), libgmpxx4ldbl (= 2:6.3.0+dfsg-5), libgnutls-dane0t64 (= 3.8.10-2), libgnutls-openssl27t64 (= 3.8.10-2), libgnutls28-dev (= 3.8.10-2), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-7), libgprofng0 (= 2.45-8), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhogweed6t64 (= 3.10.2-1), libhts-dev (= 1.22.1+ds2-1), libhts3t64 (= 1.22.1+ds2-1), libhtscodecs2 (= 1.6.1-2), libhwasan0 (= 15.2.0-7), libicu-dev (= 76.1-4), libicu76 (= 76.1-4), libidn2-0 (= 2.3.8-4), libidn2-dev (= 2.3.8-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-7), libjansson4 (= 2.14-2+b3), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblsan0 (= 15.2.0-7), liblzma-dev (= 5.8.1-2), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp2-dev (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-gnutls-dev (= 1.16.0-1), libngtcp2-crypto-gnutls8 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libp11-kit-dev (= 0.25.9-2), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libquadmath0 (= 15.2.0-7), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.9-2), libsframe2 (= 2.45-8), libsmartcols1 (= 2.41.2-4), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1), libssl3t64 (= 3.5.4-1), libstdc++-14-dev (= 14.3.0-10), libstdc++-15-dev (= 15.2.0-7), libstdc++6 (= 15.2.0-7), libsystemd0 (= 258.1-1), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-7), libtsan2 (= 15.2.0-7), libubsan1 (= 15.2.0-7), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-1), libunbound8 (= 1.24.1-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libxml2-16 (= 2.15.1+dfsg-0.2), libzstd-dev (= 1.5.7+dfsg-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.16.12-2), m4 (= 1.4.20-2), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), nettle-dev (= 3.10.2-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-5), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1697121644" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ delly-dbgsym_1.1.8-1_armel.deb ------------------------------ new Debian package, version 2.0. size 6268884 bytes: control archive=528 bytes. 363 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: delly-dbgsym Source: delly Version: 1.1.8-1 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 7403 Depends: delly (= 1.1.8-1) Section: debug Priority: optional Description: debug symbols for delly Build-Ids: 3701d06857442887039c11be922b1245487d177d drwxr-xr-x root/root 0 2023-10-12 14:40 ./ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/lib/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/lib/debug/.build-id/37/ -rw-r--r-- root/root 7570368 2023-10-12 14:40 ./usr/lib/debug/.build-id/37/01d06857442887039c11be922b1245487d177d.debug drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-10-12 14:40 ./usr/share/doc/delly-dbgsym -> delly delly_1.1.8-1_armel.deb ----------------------- new Debian package, version 2.0. size 338976 bytes: control archive=948 bytes. 943 bytes, 16 lines control 312 bytes, 5 lines md5sums Package: delly Version: 1.1.8-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1106 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libhts3t64 (>= 1.17), libstdc++6 (>= 14) Section: science Priority: optional Homepage: https://github.com/dellytools/delly Description: Structural variant discovery by read analysis Delly performs Structural variant discovery by integrated paired-end and split-read analysis. It discovers, genotypes and visualizes deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. drwxr-xr-x root/root 0 2023-10-12 14:40 ./ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/bin/ -rwxr-xr-x root/root 1115988 2023-10-12 14:40 ./usr/bin/delly drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/doc/delly/ -rw-r--r-- root/root 1120 2023-10-12 14:40 ./usr/share/doc/delly/changelog.Debian.gz -rw-r--r-- root/root 2645 2023-10-12 14:39 ./usr/share/doc/delly/copyright drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/man/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/man/man1/ -rw-r--r-- root/root 291 2023-10-12 14:40 ./usr/share/man/man1/delly.1.gz -rw-r--r-- root/root 336 2023-10-12 14:40 ./usr/share/man/man1/dpe.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1476 B] Get:5 copy:/<>/apt_archive ./ Packages [1555 B] Fetched 3646 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libxml-libxml-perl : Depends: libxml2-16 (< 2.15~) but 2.15.1+dfsg-0.2 is to be installed Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:armel : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 83 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 17 Job: delly_1.1.8-1 Lintian: error Machine Architecture: amd64 Package: delly Package-Time: 109 Source-Version: 1.1.8-1 Space: n/a Status: successful Version: 1.1.8-1 -------------------------------------------------------------------------------- Finished at 2025-10-24T22:36:13Z Build needed 00:01:49, no disk space