sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | diamond-aligner 0.9.30-1 (s390x) Thu, 06 Feb 2020 01:41:39 +0000 | +==============================================================================+ Package: diamond-aligner Version: 0.9.30-1 Source Version: 0.9.30-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-182cf97d-3963-4267-b5b5-90c264e4d193' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-yXNyu3/resolver-vRYtpZ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-05-0809.10.pdiff [2675 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-05-1414.47.pdiff [11.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-05-2015.02.pdiff [15.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-05-2015.02.pdiff [15.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-05-0809.10.pdiff [11.9 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-05-1414.47.pdiff [6768 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-05-2015.02.pdiff [18.5 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-05-2015.02.pdiff [18.5 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7907 kB] Fetched 8172 kB in 2s (3750 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libitm1 liblsan0 libquadmath0 libstdc++6 libtsan0 libubsan1 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1678 kB of archives. After this operation, 4096 B disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 10-20200204-1 [9056 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 10-20200204-1 [135 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0 amd64 10-20200204-1 [314 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-base amd64 10-20200204-1 [195 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 10-20200204-1 [491 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 10-20200204-1 [145 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 10-20200204-1 [142 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 10-20200204-1 [25.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 10-20200204-1 [99.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1 amd64 10-20200204-1 [41.5 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1 amd64 1:10-20200204-1 [41.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 10-20200204-1 [39.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1678 kB in 0s (32.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12784 files and directories currently installed.) Preparing to unpack .../libatomic1_10-20200204-1_amd64.deb ... Unpacking libatomic1:amd64 (10-20200204-1) over (10-20200202-1) ... Preparing to unpack .../libubsan1_10-20200204-1_amd64.deb ... Unpacking libubsan1:amd64 (10-20200204-1) over (10-20200202-1) ... Preparing to unpack .../libtsan0_10-20200204-1_amd64.deb ... Unpacking libtsan0:amd64 (10-20200204-1) over (10-20200202-1) ... 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Unpacking libgcc1 (1:10-20200204-1) over (1:10-20200202-1) ... Setting up libgcc1 (1:10-20200204-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12784 files and directories currently installed.) Preparing to unpack .../libcc1-0_10-20200204-1_amd64.deb ... Unpacking libcc1-0:amd64 (10-20200204-1) over (10-20200202-1) ... Setting up libgomp1:amd64 (10-20200204-1) ... Setting up libquadmath0:amd64 (10-20200204-1) ... Setting up libatomic1:amd64 (10-20200204-1) ... Setting up libubsan1:amd64 (10-20200204-1) ... Setting up libcc1-0:amd64 (10-20200204-1) ... Setting up liblsan0:amd64 (10-20200204-1) ... Setting up libitm1:amd64 (10-20200204-1) ... Setting up libtsan0:amd64 (10-20200204-1) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 792 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main diamond-aligner 0.9.30-1 (dsc) [2016 B] Get:2 http://debian.oregonstate.edu/debian unstable/main diamond-aligner 0.9.30-1 (tar) [782 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main diamond-aligner 0.9.30-1 (diff) [7720 B] Fetched 792 kB in 0s (33.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/diamond-aligner-yXNyu3/diamond-aligner-0.9.30' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-yXNyu3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 12), cmake, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [415 B] Get:5 copy:/<>/apt_archive ./ Packages [505 B] Fetched 1877 B in 0s (97.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libbsd0 libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libicu63 libio-string-perl libitm1:s390x libitm1-s390x-cross libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf procps sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation cmake-doc ninja-build gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-s390x-linux-gnu gcc-9-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x krb5-doc krb5-user libstdc++-9-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:s390x ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libbsd0 libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libicu63 libio-string-perl libitm1:s390x libitm1-s390x-cross libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 85.3 MB of archives. After this operation, 351 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10-20200204-1 [195 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.2.1-28 [195 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2+b1 [62.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2+b1 [259 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.34-2 [1944 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-10 [2638 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-28 [1697 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-28 [10.7 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.16.3-1 [1628 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.0-1+b1 [335 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1+b2 [225 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.67.0-2 [321 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.33.1-3 [125 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.16.3-1 [3673 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu-base amd64 9.2.1-21cross1 [195 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-s390x-linux-gnu amd64 9.2.1-21cross1 [6139 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.29-9cross1 [1246 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:9.2.1-21cross1 [24.3 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 9.2.1-21cross1 [79.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 9.2.1-21cross1 [26.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 9.2.1-21cross1 [7952 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 9.2.1-21cross1 [337 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 9.2.1-21cross1 [450 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 9.2.1-21cross1 [119 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-s390x-cross all 9.2.1-21cross1 [681 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu amd64 9.2.1-21cross1 [6507 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:9.2.1-3.1 [1456 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.4.8-1cross1 [1145 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.29-9cross1 [2209 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-s390x-cross all 9.2.1-21cross1 [1646 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-s390x-linux-gnu amd64 9.2.1-21cross1 [6716 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:9.2.1-3.1 [1176 B] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10-20200204-1 [24.5 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.10-10 [88.1 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.29-10 [2442 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.2.1-28 [344 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10-20200204-1 [8204 B] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.4.13-1 [1057 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.10-10 [107 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.29-10 [2236 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10-20200204-1 [92.1 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10-20200204-1 [25.4 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10-20200204-1 [485 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10-20200204-1 [126 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.2.1-28 [682 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.2.1-28 [1659 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1.2 [88.8 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1.2 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.3 MB in 1s (64.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12784 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Unpacking procps (2:3.3.15-2+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../012-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../013-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../014-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../015-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../016-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../017-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up libdebhelper-perl (12.9) ... Setting up libbrotli1:amd64 (1.0.7-6) ... Setting up libc6-s390x-cross (2.29-9cross1) ... Setting up gcc-9-s390x-linux-gnu-base:amd64 (9.2.1-21cross1) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:s390x (5.4.13-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:s390x (10-20200204-1) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.4.8-1cross1) ... Setting up cross-config (2.6.15-3) ... Setting up libuv1:amd64 (1.33.1-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up cpp-9-s390x-linux-gnu (9.2.1-21cross1) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libitm1-s390x-cross (9.2.1-21cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.29-9cross1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-10) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libgomp1-s390x-cross (9.2.1-21cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up libgcc1-s390x-cross (1:9.2.1-21cross1) ... Setting up gcc-9-base:s390x (9.2.1-28) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libstdc++-9-dev:amd64 (9.2.1-28) ... Setting up cpp-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up libtool (2.4.6-11) ... Setting up libarchive13:amd64 (3.4.0-1+b1) ... Setting up libstdc++6-s390x-cross (9.2.1-21cross1) ... Setting up libatomic1-s390x-cross (9.2.1-21cross1) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1+b2) ... Setting up m4 (1.4.18-4) ... Setting up libasan5-s390x-cross (9.2.1-21cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-28) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up libcurl4:amd64 (7.67.0-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libubsan1-s390x-cross (9.2.1-21cross1) ... Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.16.3-1) ... Setting up libgcc-9-dev-s390x-cross (9.2.1-21cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-9-dev-s390x-cross (9.2.1-21cross1) ... Setting up gcc-9-s390x-linux-gnu (9.2.1-21cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up g++-9-s390x-linux-gnu (9.2.1-21cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.10-10) ... Setting up libgcc-s1:s390x (10-20200204-1) ... Setting up libc6:s390x (2.29-10) ... Setting up libcrypt-dev:s390x (1:4.4.10-10) ... Setting up libc6-dev:s390x (2.29-10) ... Setting up libstdc++6:s390x (10-20200204-1) ... Setting up libitm1:s390x (10-20200204-1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-1.2) ... Setting up libgomp1:s390x (10-20200204-1) ... Setting up dh-autoreconf (19) ... Setting up libasan5:s390x (9.2.1-28) ... Setting up libatomic1:s390x (10-20200204-1) ... Setting up libubsan1:s390x (10-20200204-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1.2) ... Setting up debhelper (12.9) ... Setting up libgcc-9-dev:s390x (9.2.1-28) ... Setting up libstdc++-9-dev:s390x (9.2.1-28) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.34-2 dpkg-dev_1.19.7 g++-9_9.2.1-28 gcc-8_8.3.0-28 gcc-9_9.2.1-28 libc6-dev_2.29-10 libstdc++-9-dev_9.2.1-28 libstdc++-9-dev-s390x-cross_9.2.1-21cross1 libstdc++6_10-20200204-1 libstdc++6-s390x-cross_9.2.1-21cross1 linux-libc-dev_5.4.13-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-2 binutils-common_2.34-2 binutils-s390x-linux-gnu_2.34-2 binutils-x86-64-linux-gnu_2.34-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-28 cpp-9_9.2.1-28 cpp-9-s390x-linux-gnu_9.2.1-21cross1 cpp-s390x-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-s390x_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-28 g++-9-s390x-linux-gnu_9.2.1-21cross1 g++-s390x-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200204-1 gcc-8_8.3.0-28 gcc-8-base_8.3.0-28 gcc-9_9.2.1-28 gcc-9-base_9.2.1-28 gcc-9-cross-base_9.2.1-21cross1 gcc-9-s390x-linux-gnu_9.2.1-21cross1 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libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200204-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-28 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libprocps7_2:3.3.15-2+b1 libpsl5_0.20.2-2 libquadmath0_10-20200204-1 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-28 libstdc++-9-dev-s390x-cross_9.2.1-21cross1 libstdc++6_10-20200204-1 libstdc++6-s390x-cross_9.2.1-21cross1 libsub-override-perl_0.09-2 libsystemd0_244.1-3 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_10-20200204-1 libubsan1_10-20200204-1 libubsan1-s390x-cross_9.2.1-21cross1 libuchardet0_0.0.6-3 libudev1_244.1-3 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.33.1-3 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.13-1 linux-libc-dev-s390x-cross_5.4.8-1cross1 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 procps_2:3.3.15-2+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: diamond-aligner Binary: diamond-aligner Architecture: any Version: 0.9.30-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bbuchfink/diamond Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/diamond-aligner Vcs-Git: https://salsa.debian.org/med-team/diamond-aligner.git Build-Depends: debhelper-compat (= 12), cmake, zlib1g-dev Package-List: diamond-aligner deb science optional arch=any Checksums-Sha1: 68d9895dab7338963a485233e0c1d9b095a415d8 781976 diamond-aligner_0.9.30.orig.tar.xz 0514eeb9e06b5bb2ffbd559739b6ebb9181905f6 7720 diamond-aligner_0.9.30-1.debian.tar.xz Checksums-Sha256: 1ce4d7ac5f405fa5cb7d3f3cf47445f08ccef19f9ab81722dfb8de83fc3141e1 781976 diamond-aligner_0.9.30.orig.tar.xz 3011782de3ec809a46e083d683c662e1d093733dd147c17457d91d24e865083e 7720 diamond-aligner_0.9.30-1.debian.tar.xz Files: a4f8f299166d3d1d3f123634ab052ae7 781976 diamond-aligner_0.9.30.orig.tar.xz d2599fc2d2c64cb6bcf2add9fcda2130 7720 diamond-aligner_0.9.30-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl46vXQACgkQPCZ2P2xn 5uKBMw//TXBchpMCaF/WJJ//xhLjJTqn5yRRk+x6QDw1ZqPvWGlnUFzElYAD0y9f lkJLlOuDG3m9saTDGfQvCRKvHNg3TXV63VKfMZIJBlOWmSE3wh1sFlBLy+k0Riqz 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extracting diamond-aligner in /<> dpkg-source: info: unpacking diamond-aligner_0.9.30.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_0.9.30-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid_unwanted_optimisation.patch dpkg-source: info: applying 82feea2aee5c82e283704b9317cb5e8abc625f90.patch dpkg-source: info: applying multi_arch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-182cf97d-3963-4267-b5b5-90c264e4d193 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 0.9.30-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DX86=OFF cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DX86=OFF .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/s390x-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done CMake Error at CMakeLists.txt:171 (add_executable): Cannot find source file: src/util/Timer.cpp Tried extensions .c .C .c++ .cc .cpp .cxx .cu .m .M .mm .h .hh .h++ .hm .hpp .hxx .in .txx CMake Error at CMakeLists.txt:171 (add_executable): No SOURCES given to target: diamond CMake Generate step failed. Build files cannot be regenerated correctly. cd obj-s390x-linux-gnu && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /<>/obj-s390x-linux-gnu # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //BUILD_STATIC BUILD_STATIC:BOOL=OFF //Path to a program. CMAKE_ADDR2LINE:FILEPATH=/usr/bin/s390x-linux-gnu-addr2line //Path to a program. CMAKE_AR:FILEPATH=/usr/bin/s390x-linux-gnu-ar //Choose the type of build, options are: None Debug Release RelWithDebInfo // MinSizeRel ... CMAKE_BUILD_TYPE:STRING=None //Enable/Disable color output during build. CMAKE_COLOR_MAKEFILE:BOOL=ON //CXX compiler CMAKE_CXX_COMPILER:STRING=/usr/bin/s390x-linux-gnu-g++ //A wrapper around 'ar' adding the appropriate '--plugin' option // for the GCC compiler CMAKE_CXX_COMPILER_AR:FILEPATH=/usr/bin/s390x-linux-gnu-gcc-ar-9 //A wrapper around 'ranlib' adding the appropriate '--plugin' option // for the GCC compiler CMAKE_CXX_COMPILER_RANLIB:FILEPATH=/usr/bin/s390x-linux-gnu-gcc-ranlib-9 //Flags used by the CXX compiler during all build types. CMAKE_CXX_FLAGS:STRING=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 //Flags used by the CXX compiler during DEBUG builds. CMAKE_CXX_FLAGS_DEBUG:STRING=-g //Flags used by the CXX compiler during MINSIZEREL builds. CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG //Flags used by the CXX compiler during NONE builds. CMAKE_CXX_FLAGS_NONE:STRING= //Flags used by the CXX compiler during RELEASE builds. CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG //Flags used by the CXX compiler during RELWITHDEBINFO builds. CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG //C compiler CMAKE_C_COMPILER:STRING=/usr/bin/s390x-linux-gnu-gcc //A wrapper around 'ar' adding the appropriate '--plugin' option // for the GCC compiler CMAKE_C_COMPILER_AR:FILEPATH=/usr/bin/s390x-linux-gnu-gcc-ar-9 //A wrapper around 'ranlib' adding the appropriate '--plugin' option // for the GCC compiler CMAKE_C_COMPILER_RANLIB:FILEPATH=/usr/bin/s390x-linux-gnu-gcc-ranlib-9 //Flags used by the C compiler during all build types. CMAKE_C_FLAGS:STRING=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 //Flags used by the C compiler during DEBUG builds. CMAKE_C_FLAGS_DEBUG:STRING=-g //Flags used by the C compiler during MINSIZEREL builds. CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG //Flags used by the C compiler during NONE builds. CMAKE_C_FLAGS_NONE:STRING= //Flags used by the C compiler during RELEASE builds. CMAKE_C_FLAGS_RELEASE:STRING=-O3 -DNDEBUG //Flags used by the C compiler during RELWITHDEBINFO builds. CMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG //Path to a program. CMAKE_DLLTOOL:FILEPATH=CMAKE_DLLTOOL-NOTFOUND //Flags used by the linker during all build types. CMAKE_EXE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,-z,now //Flags used by the linker during DEBUG builds. CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during MINSIZEREL builds. CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during NONE builds. CMAKE_EXE_LINKER_FLAGS_NONE:STRING= //Flags used by the linker during RELEASE builds. CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during RELWITHDEBINFO builds. CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING= //Enable/Disable output of compile commands during generation. CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=OFF //No help, variable specified on the command line. CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/s390x-linux-gnu //No help, variable specified on the command line. CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var //Install path prefix, prepended onto install directories. CMAKE_INSTALL_PREFIX:PATH=/usr //No help, variable specified on the command line. CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run //No help, variable specified on the command line. CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc //Path to a program. CMAKE_LINKER:FILEPATH=/usr/bin/s390x-linux-gnu-ld //Path to a program. 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/usr/bin/s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=pthread_create -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cmTC_a0738.dir/CheckFunctionExists.c.o -o cmTC_a0738 -lpthread make[3]: Leaving directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' make[2]: Leaving directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' cd obj-s390x-linux-gnu && tail -v -n \+0 CMakeFiles/CMakeError.log ==> CMakeFiles/CMakeError.log <== Performing C SOURCE FILE Test CMAKE_HAVE_LIBC_PTHREAD failed with the following output: Change Dir: /<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_14799/fast && make[2]: Entering directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' /usr/bin/make -f CMakeFiles/cmTC_14799.dir/build.make CMakeFiles/cmTC_14799.dir/build make[3]: Entering directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_14799.dir/src.c.o /usr/bin/s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -DCMAKE_HAVE_LIBC_PTHREAD -o CMakeFiles/cmTC_14799.dir/src.c.o -c /<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp/src.c Linking C executable cmTC_14799 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_14799.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -DCMAKE_HAVE_LIBC_PTHREAD -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cmTC_14799.dir/src.c.o -o cmTC_14799 ./obj-s390x-linux-gnu/CMakeFiles/CMakeTmp/src.c:11: error: undefined reference to 'pthread_create' ./obj-s390x-linux-gnu/CMakeFiles/CMakeTmp/src.c:12: error: undefined reference to 'pthread_detach' ./obj-s390x-linux-gnu/CMakeFiles/CMakeTmp/src.c:13: error: undefined reference to 'pthread_join' collect2: error: ld returned 1 exit status make[3]: *** [CMakeFiles/cmTC_14799.dir/build.make:87: cmTC_14799] Error 1 make[3]: Leaving directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' make[2]: *** [Makefile:121: cmTC_14799/fast] Error 2 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' Source file was: #include void* test_func(void* data) { return data; } int main(void) { pthread_t thread; pthread_create(&thread, NULL, test_func, NULL); pthread_detach(thread); pthread_join(thread, NULL); pthread_atfork(NULL, NULL, NULL); pthread_exit(NULL); return 0; } Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_7e6e6/fast && make[2]: Entering directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' /usr/bin/make -f CMakeFiles/cmTC_7e6e6.dir/build.make CMakeFiles/cmTC_7e6e6.dir/build make[3]: Entering directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_7e6e6.dir/CheckFunctionExists.c.o /usr/bin/s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTC_7e6e6.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.16/Modules/CheckFunctionExists.c Linking C executable cmTC_7e6e6 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_7e6e6.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=pthread_create -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cmTC_7e6e6.dir/CheckFunctionExists.c.o -o cmTC_7e6e6 -lpthreads /usr/lib/gcc-cross/s390x-linux-gnu/9/../../../../s390x-linux-gnu/bin/ld.gold: error: cannot find -lpthreads /usr/share/cmake-3.16/Modules/CheckFunctionExists.c:17: error: undefined reference to 'pthread_create' collect2: error: ld returned 1 exit status make[3]: *** [CMakeFiles/cmTC_7e6e6.dir/build.make:87: cmTC_7e6e6] Error 1 make[3]: Leaving directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' make[2]: *** [Makefile:121: cmTC_7e6e6/fast] Error 2 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu/CMakeFiles/CMakeTmp' dh_auto_configure: error: cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DX86=OFF .. returned exit code 1 make[1]: *** [debian/rules:26: override_dh_auto_configure] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:23: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-06T01:42:17Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 7528 Build-Time: 4 Distribution: unstable Fail-Stage: build Foreign Architectures: s390x Host Architecture: s390x Install-Time: 21 Job: diamond-aligner_0.9.30-1 Machine Architecture: amd64 Package: diamond-aligner Package-Time: 38 Source-Version: 0.9.30-1 Space: 7528 Status: attempted Version: 0.9.30-1 -------------------------------------------------------------------------------- Finished at 2020-02-06T01:42:17Z Build needed 00:00:38, 7528k disk space