sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | diamond-aligner 0.9.30-2 (s390x) Fri, 07 Feb 2020 08:17:43 +0000 | +==============================================================================+ Package: diamond-aligner Version: 0.9.30-2 Source Version: 0.9.30-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-a22921e8-6baf-48f7-bd08-20a99cf262bd' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-4iHeC4/resolver-RbuKtU' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7907 kB] Fetched 7907 kB in 2s (3703 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 792 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main diamond-aligner 0.9.30-2 (dsc) [2016 B] Get:2 http://debian.oregonstate.edu/debian unstable/main diamond-aligner 0.9.30-2 (tar) [782 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main diamond-aligner 0.9.30-2 (diff) [7908 B] Fetched 792 kB in 0s (46.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/diamond-aligner-4iHeC4/diamond-aligner-0.9.30' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-4iHeC4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 12), cmake, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [415 B] Get:5 copy:/<>/apt_archive ./ Packages [503 B] Fetched 1875 B in 0s (102 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libbsd0 libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libicu63 libio-string-perl libitm1:s390x libitm1-s390x-cross libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf procps sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation cmake-doc ninja-build gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-s390x-linux-gnu gcc-9-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x krb5-doc krb5-user libstdc++-9-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:s390x ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libbsd0 libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libicu63 libio-string-perl libitm1:s390x libitm1-s390x-cross libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 85.3 MB of archives. After this operation, 351 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10-20200204-1 [195 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.2.1-28 [195 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2+b1 [62.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2+b1 [259 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.34-2 [1944 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-10 [2638 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-28 [1697 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-28 [10.7 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.16.3-1 [1628 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.0-1+b1 [335 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.49+dfsg-1 [91.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-1 [226 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.67.0-2 [321 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.33.1-3 [125 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.16.3-1 [3673 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu-base amd64 9.2.1-21cross1 [195 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-s390x-linux-gnu amd64 9.2.1-21cross1 [6139 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.29-9cross1 [1246 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:9.2.1-21cross1 [24.3 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 9.2.1-21cross1 [79.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 9.2.1-21cross1 [26.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 9.2.1-21cross1 [7952 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 9.2.1-21cross1 [337 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 9.2.1-21cross1 [450 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 9.2.1-21cross1 [119 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-s390x-cross all 9.2.1-21cross1 [681 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu amd64 9.2.1-21cross1 [6507 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:9.2.1-3.1 [1456 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.4.8-1cross1 [1145 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.29-9cross1 [2209 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-s390x-cross all 9.2.1-21cross1 [1646 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-s390x-linux-gnu amd64 9.2.1-21cross1 [6716 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:9.2.1-3.1 [1176 B] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10-20200204-1 [24.5 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.10-10 [88.1 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.29-10 [2442 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.2.1-28 [344 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10-20200204-1 [8204 B] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.4.13-1 [1057 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.10-10 [107 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.29-10 [2236 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10-20200204-1 [92.1 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10-20200204-1 [25.4 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10-20200204-1 [485 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10-20200204-1 [126 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.2.1-28 [682 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.2.1-28 [1659 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1.2 [88.8 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1.2 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.3 MB in 1s (70.2 MB/s) Selecting previously unselected package libbsd0:amd64. 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Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../121-zlib1g-dev_1%3a1.2.11.dfsg-1.2_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-1.2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../122-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000002-1) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up binutils-s390x-linux-gnu (2.34-2) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libprocps7:amd64 (2:3.3.15-2+b1) ... Setting up libdebhelper-perl (12.9) ... Setting up libbrotli1:amd64 (1.0.7-6) ... Setting up libc6-s390x-cross (2.29-9cross1) ... Setting up gcc-9-s390x-linux-gnu-base:amd64 (9.2.1-21cross1) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:s390x (5.4.13-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:s390x (10-20200204-1) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.4.8-1cross1) ... Setting up cross-config (2.6.15-3) ... Setting up libuv1:amd64 (1.33.1-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up cpp-9-s390x-linux-gnu (9.2.1-21cross1) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libitm1-s390x-cross (9.2.1-21cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.29-9cross1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-10) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libgomp1-s390x-cross (9.2.1-21cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up libgcc1-s390x-cross (1:9.2.1-21cross1) ... Setting up gcc-9-base:s390x (9.2.1-28) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libstdc++-9-dev:amd64 (9.2.1-28) ... Setting up cpp-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up libtool (2.4.6-11) ... Setting up libarchive13:amd64 (3.4.0-1+b1) ... Setting up libstdc++6-s390x-cross (9.2.1-21cross1) ... Setting up libatomic1-s390x-cross (9.2.1-21cross1) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libasan5-s390x-cross (9.2.1-21cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-28) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up libcurl4:amd64 (7.67.0-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libubsan1-s390x-cross (9.2.1-21cross1) ... Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.16.3-1) ... Setting up libgcc-9-dev-s390x-cross (9.2.1-21cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-9-dev-s390x-cross (9.2.1-21cross1) ... Setting up gcc-9-s390x-linux-gnu (9.2.1-21cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up g++-9-s390x-linux-gnu (9.2.1-21cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.10-10) ... Setting up libgcc-s1:s390x (10-20200204-1) ... Setting up libc6:s390x (2.29-10) ... Setting up libcrypt-dev:s390x (1:4.4.10-10) ... Setting up libc6-dev:s390x (2.29-10) ... Setting up libstdc++6:s390x (10-20200204-1) ... Setting up libitm1:s390x (10-20200204-1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-1.2) ... Setting up libgomp1:s390x (10-20200204-1) ... Setting up dh-autoreconf (19) ... Setting up libasan5:s390x (9.2.1-28) ... Setting up libatomic1:s390x (10-20200204-1) ... Setting up libubsan1:s390x (10-20200204-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1.2) ... Setting up debhelper (12.9) ... Setting up libgcc-9-dev:s390x (9.2.1-28) ... Setting up libstdc++-9-dev:s390x (9.2.1-28) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.34-2 dpkg-dev_1.19.7 g++-9_9.2.1-28 gcc-8_8.3.0-28 gcc-9_9.2.1-28 libc6-dev_2.29-10 libstdc++-9-dev_9.2.1-28 libstdc++-9-dev-s390x-cross_9.2.1-21cross1 libstdc++6_10-20200204-1 libstdc++6-s390x-cross_9.2.1-21cross1 linux-libc-dev_5.4.13-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-2 binutils-common_2.34-2 binutils-s390x-linux-gnu_2.34-2 binutils-x86-64-linux-gnu_2.34-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-28 cpp-9_9.2.1-28 cpp-9-s390x-linux-gnu_9.2.1-21cross1 cpp-s390x-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-s390x_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-28 g++-9-s390x-linux-gnu_9.2.1-21cross1 g++-s390x-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200204-1 gcc-8_8.3.0-28 gcc-8-base_8.3.0-28 gcc-9_9.2.1-28 gcc-9-base_9.2.1-28 gcc-9-cross-base_9.2.1-21cross1 gcc-9-s390x-linux-gnu_9.2.1-21cross1 gcc-9-s390x-linux-gnu-base_9.2.1-21cross1 gcc-s390x-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-28 libasan5-s390x-cross_9.2.1-21cross1 libatomic1_10-20200204-1 libatomic1-s390x-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-2 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-dev-s390x-cross_2.29-9cross1 libc6-s390x-cross_2.29-9cross1 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200204-1 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-2 libctf0_2.34-2 libcurl4_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-28 libgcc-9-dev_9.2.1-28 libgcc-9-dev-s390x-cross_9.2.1-21cross1 libgcc-s1_10-20200204-1 libgcc1_1:10-20200204-1 libgcc1-s390x-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-3 libgnutls30_3.6.11.1-2 libgomp1_10-20200204-1 libgomp1-s390x-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_10-20200204-1 libitm1-s390x-cross_9.2.1-21cross1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-1 libldap-common_2.4.49+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200204-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-28 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libprocps7_2:3.3.15-2+b1 libpsl5_0.20.2-2 libquadmath0_10-20200204-1 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 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patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 procps_2:3.3.15-2+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: diamond-aligner Binary: diamond-aligner Architecture: any Version: 0.9.30-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bbuchfink/diamond Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/diamond-aligner Vcs-Git: https://salsa.debian.org/med-team/diamond-aligner.git Build-Depends: debhelper-compat (= 12), cmake, zlib1g-dev Package-List: diamond-aligner deb science optional arch=any Checksums-Sha1: 68d9895dab7338963a485233e0c1d9b095a415d8 781976 diamond-aligner_0.9.30.orig.tar.xz a4bbefff872ddd7c15d5dd8e79e64289a08cc395 7908 diamond-aligner_0.9.30-2.debian.tar.xz Checksums-Sha256: 1ce4d7ac5f405fa5cb7d3f3cf47445f08ccef19f9ab81722dfb8de83fc3141e1 781976 diamond-aligner_0.9.30.orig.tar.xz 90b9340aba56cc50f3e018f3e289df15364a5c8b825476882b0ac28f2df359d2 7908 diamond-aligner_0.9.30-2.debian.tar.xz Files: a4f8f299166d3d1d3f123634ab052ae7 781976 diamond-aligner_0.9.30.orig.tar.xz 14c3896d6029248e97c9fd4a9daae39a 7908 diamond-aligner_0.9.30-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl48Oo8ACgkQPCZ2P2xn 5uLOIg/+Iwzh0jBlFk3ZezaAghjy/WHyr2WXrpXJPokhZHRNDgmCLUtNBu+aHcUA jDpYNUfj6ojsHK6/Y+hefRqdmwRk6UzdrAVg6LWMzTZGv3PCThk8F2pk5G+tTMkm 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extracting diamond-aligner in /<> dpkg-source: info: unpacking diamond-aligner_0.9.30.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_0.9.30-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid_unwanted_optimisation.patch dpkg-source: info: applying 82feea2aee5c82e283704b9317cb5e8abc625f90.patch dpkg-source: info: applying multi_arch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-a22921e8-6baf-48f7-bd08-20a99cf262bd SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 0.9.30-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DX86=OFF cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DX86=OFF .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/s390x-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-s390x-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-s390x-linux-gnu && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles /<>/obj-s390x-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-s390x-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend make[3]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake --color= Scanning dependencies of target arch_generic make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build make[3]: Entering directory '/<>/obj-s390x-linux-gnu' [ 0%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -DDISPATCH_ARCH=ARCH_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /<>/src/dp/swipe/banded_3frame_swipe.cpp [ 1%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -DDISPATCH_ARCH=ARCH_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe.cpp.o -c /<>/src/dp/swipe/swipe.cpp [ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_swipe.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 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-Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -DDISPATCH_ARCH=ARCH_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/search/stage1.cpp.o -c /<>/src/search/stage1.cpp [ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -DDISPATCH_ARCH=ARCH_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o -c /<>/src/search/stage2.cpp [ 6%] Building CXX object CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -DDISPATCH_ARCH=ARCH_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -c /<>/src/tools/benchmark.cpp [ 7%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -DDISPATCH_ARCH=ARCH_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /<>/src/dp/swipe/swipe_wrapper.cpp [ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -DDISPATCH_ARCH=ARCH_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o -c /<>/src/util/tantan.cpp make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 8%] Built target arch_generic make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake --color= Scanning dependencies of target diamond make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/<>/obj-s390x-linux-gnu' [ 9%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-std=gnu++11 -o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o -c /<>/src/basic/score_matrix.cpp [ 12%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -std=gnu++11 -o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o -c /<>/src/blast/blast_filter.cpp [ 13%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -std=gnu++11 -o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o -c /<>/src/blast/blast_seg.cpp [ 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-std=gnu++11 -o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o -c /<>/src/data/taxonomy.cpp /<>/src/data/taxonomy.cpp: In member function ‘void Taxonomy::load_nodes()’: /<>/src/data/taxonomy.cpp:105:50: warning: format ‘%[^ ’ expects argument of type ‘char*’, but argument 5 has type ‘char (*)[64]’ [-Wformat=] 105 | if (sscanf(f.line.c_str(), "%u\t|\t%u\t|\t%63[^\t]", &taxid, &parent, &rank) != 3) | ~~~~~^~ ~~~~~ | | | | char* char (*)[64] [ 48%] Building CXX object CMakeFiles/diamond.dir/src/basic/masking.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src -I/<>/src/lib -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wno-uninitialized -Wno-ignored-attributes -Wno-unused-variable -std=gnu++11 -o CMakeFiles/diamond.dir/src/basic/masking.cpp.o -c /<>/src/basic/masking.cpp [ 49%] Building CXX object CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/src 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CMakeFiles/diamond.dir/src/test/test.cpp.o CMakeFiles/diamond.dir/src/align/ranking.cpp.o CMakeFiles/diamond.dir/src/align/ungapped.cpp.o CMakeFiles/diamond.dir/src/align/gapped.cpp.o CMakeFiles/diamond.dir/src/align/culling.cpp.o CMakeFiles/diamond.dir/src/cluster/medoid.cpp.o CMakeFiles/diamond.dir/src/align/output.cpp.o CMakeFiles/diamond.dir/src/tools/roc.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_swipe.cpp.o CMakeFiles/arch_generic.dir/src/search/collision.cpp.o CMakeFiles/arch_generic.dir/src/search/stage1.cpp.o CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o -o diamond -lz -lpthread /usr/s390x-linux-gnu/include/c++/9/new:174: error: undefined reference to 'Util::tantan::ARCH_GENERIC::mask(char*, int, float const**, float, float, float, float, char const*)' collect2: error: ld returned 1 exit status make[3]: *** [CMakeFiles/diamond.dir/build.make:1501: diamond] Error 1 make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:81: CMakeFiles/diamond.dir/all] Error 2 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' make[1]: *** [Makefile:133: all] Error 2 make[1]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_build: error: cd obj-s390x-linux-gnu && make -j1 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:23: build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-07T08:22:06Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 121368 Build-Time: 230 Distribution: unstable Fail-Stage: build Foreign Architectures: s390x Host Architecture: s390x Install-Time: 21 Job: diamond-aligner_0.9.30-2 Machine Architecture: amd64 Package: diamond-aligner Package-Time: 263 Source-Version: 0.9.30-2 Space: 121368 Status: attempted Version: 0.9.30-2 -------------------------------------------------------------------------------- Finished at 2020-02-07T08:22:06Z Build needed 00:04:23, 121368k disk space