sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | diamond-aligner 2.1.8-2 (arm64) Sun, 20 Aug 2023 17:11:43 +0000 | +==============================================================================+ Package: diamond-aligner Version: 2.1.8-2 Source Version: 2.1.8-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-5b166aad-5369-49d2-9a4a-7f55f771b2d4' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-qY51IU/resolver-jD4c9B' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [210 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-08-20-1421.14-F-2023-08-20-1421.14.pdiff [35.5 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-08-20-1421.14-F-2023-08-20-1421.14.pdiff [34.9 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-08-20-1421.14-F-2023-08-20-1421.14.pdiff [35.5 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-08-20-1421.14-F-2023-08-20-1421.14.pdiff [34.9 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9453 kB] Fetched 9861 kB in 2s (4695 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libperl5.36 perl perl-base perl-modules-5.36 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8854 kB of archives. After this operation, 63.5 kB disk space will be freed. Get:1 http://localhost:3142/debian sid/main amd64 libperl5.36 amd64 5.36.0-8 [4199 kB] Get:2 http://localhost:3142/debian sid/main amd64 perl amd64 5.36.0-8 [239 kB] Get:3 http://localhost:3142/debian sid/main amd64 perl-base amd64 5.36.0-8 [1600 kB] Get:4 http://localhost:3142/debian sid/main amd64 perl-modules-5.36 all 5.36.0-8 [2816 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8854 kB in 0s (174 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14526 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-8_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-8) over (5.36.0-7) ... Preparing to unpack .../perl_5.36.0-8_amd64.deb ... Unpacking perl (5.36.0-8) over (5.36.0-7) ... Preparing to unpack .../perl-base_5.36.0-8_amd64.deb ... Unpacking perl-base (5.36.0-8) over (5.36.0-7) ... Setting up perl-base (5.36.0-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14526 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-8_all.deb ... Unpacking perl-modules-5.36 (5.36.0-8) over (5.36.0-7) ... Setting up perl-modules-5.36 (5.36.0-8) ... Setting up libperl5.36:amd64 (5.36.0-8) ... Setting up perl (5.36.0-8) ... Processing triggers for libc-bin (2.37-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9581 kB of source archives. Get:1 http://localhost:3142/debian sid/main diamond-aligner 2.1.8-2 (dsc) [2199 B] Get:2 http://localhost:3142/debian sid/main diamond-aligner 2.1.8-2 (tar) [9450 kB] Get:3 http://localhost:3142/debian sid/main diamond-aligner 2.1.8-2 (diff) [129 kB] Fetched 9581 kB in 1s (7746 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/diamond-aligner-qY51IU/diamond-aligner-2.1.8' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-qY51IU' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [744 B] Get:5 copy:/<>/apt_archive ./ Packages [787 B] Fetched 2140 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cmake cmake-data cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp25 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libproc2-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf procps sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 krb5-doc:arm64 krb5-user:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 ca-certificates libarchive-cpio-perl krb5-locales:arm64 libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cmake cmake-data cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp25 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libproc2-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 471 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20230625-2 [134 kB] Get:4 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.3-1 [63.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.3-1 [762 kB] Get:6 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:9 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:10 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-13 [160 kB] Get:11 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:12 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-2 [1176 kB] Get:13 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.1-4 [88.4 kB] Get:14 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:15 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-3 [1386 kB] Get:16 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:17 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:18 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:19 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-13 [496 kB] Get:22 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.41-4 [3381 kB] Get:23 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:24 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:25 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get:26 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:27 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-3 [19.3 kB] Get:28 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-3 [56.6 kB] Get:29 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:30 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.55.1-1 [72.8 kB] Get:31 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:32 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:33 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.11.0-2 [214 kB] Get:34 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 8.2.1-1 [388 kB] Get:35 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:36 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-6 [79.8 kB] Get:37 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:38 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get:39 http://localhost:3142/debian sid/main amd64 cmake-data all 3.27.2-1 [2102 kB] Get:40 http://localhost:3142/debian sid/main amd64 cmake amd64 3.27.2-1 [10.3 MB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu-base amd64 13.2.0-2cross1 [39.6 kB] Get:42 http://localhost:3142/debian sid/main amd64 cpp-13-aarch64-linux-gnu amd64 13.2.0-2cross1 [9758 kB] Get:43 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:13.2.0-1 [4120 B] Get:44 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-2cross1 [35.2 kB] Get:46 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.37-3cross1 [1002 kB] Get:47 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 13.2.0-2cross1 [40.9 kB] Get:48 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 13.2.0-2cross1 [112 kB] Get:49 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 13.2.0-2cross1 [23.3 kB] Get:50 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 13.2.0-2cross1 [9876 B] Get:51 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 13.2.0-2cross1 [2407 kB] Get:52 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 13.2.0-2cross1 [1068 kB] Get:53 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 13.2.0-2cross1 [2279 kB] Get:54 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 13.2.0-2cross1 [575 kB] Get:55 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 13.2.0-2cross1 [980 kB] Get:56 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 13.2.0-2cross1 [1119 kB] Get:57 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-arm64-cross all 13.2.0-2cross1 [2232 kB] Get:58 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu amd64 13.2.0-2cross1 [19.2 MB] Get:59 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:13.2.0-1 [1468 B] Get:60 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 6.3.7-1cross1 [1894 kB] Get:61 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.37-3cross1 [1424 kB] Get:62 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-arm64-cross all 13.2.0-2cross1 [2132 kB] Get:63 http://localhost:3142/debian sid/main amd64 g++-13-aarch64-linux-gnu amd64 13.2.0-2cross1 [10.7 MB] Get:64 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:13.2.0-1 [1172 B] Get:65 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:66 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:69 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:70 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:71 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:72 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:73 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:74 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:75 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:76 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:77 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:78 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.10 [3484 B] Get:79 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.5 [81.8 kB] Get:80 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:81 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:82 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:83 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:84 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:85 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:86 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.189-4 [174 kB] Get:87 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:88 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-13 [1300 kB] Get:89 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:90 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:91 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.5 [952 kB] Get:92 http://localhost:3142/debian sid/main arm64 gcc-11-base arm64 11.4.0-2 [39.2 kB] Get:93 http://localhost:3142/debian sid/main arm64 gcc-13-base arm64 13.2.0-2 [39.3 kB] Get:94 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 13.2.0-2 [40.9 kB] Get:95 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.37-7 [2312 kB] Get:96 http://localhost:3142/debian sid/main arm64 libasan6 arm64 11.4.0-2 [1948 kB] Get:97 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 13.2.0-2 [10.2 kB] Get:98 http://localhost:3142/debian sid/main arm64 linux-libc-dev arm64 6.4.11-1 [1799 kB] Get:99 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.36-2 [90.3 kB] Get:100 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-2 [121 kB] Get:101 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.0-2 [19.6 kB] Get:102 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-3 [31.7 kB] Get:103 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-3 [79.2 kB] Get:104 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2 [8844 B] Get:105 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.0.10-1 [1801 kB] Get:106 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-3 [314 kB] Get:107 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-3 [123 kB] Get:108 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.3+ds-1 [80.9 kB] Get:109 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:110 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.3+ds-1 [194 kB] Get:111 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:112 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.37-7 [1428 kB] Get:113 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 13.2.0-2 [114 kB] Get:114 http://localhost:3142/debian sid/main arm64 libitm1 arm64 13.2.0-2 [23.8 kB] Get:115 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 13.2.0-2 [1069 kB] Get:116 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.4.0-2 [1957 kB] Get:117 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 13.2.0-2 [621 kB] Get:118 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 13.2.0-2 [980 kB] Get:119 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 13.2.0-2 [1120 kB] Get:120 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.4.0-2 [933 kB] Get:121 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.4.0-2 [1935 kB] Get:122 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.2.13.dfsg-3 [82.9 kB] Get:123 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-3 [913 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 116 MB in 1s (186 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14526 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.4+20230625-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20230625-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.3-1_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.3-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.3-1_amd64.deb ... Unpacking procps (2:4.0.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... 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Selecting previously unselected package zlib1g:arm64. Preparing to unpack .../120-zlib1g_1%3a1.2.13.dfsg-3_arm64.deb ... Unpacking zlib1g:arm64 (1:1.2.13.dfsg-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../121-zlib1g-dev_1%3a1.2.13.dfsg-3_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.13.dfsg-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy:arm64. Preparing to unpack .../122-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libexpat1:amd64 (2.5.0-2) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up gcc-11-base:arm64 (11.4.0-2) ... Setting up libfile-which-perl (1.27-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.39.1-4) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.5) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libnghttp2-14:amd64 (1.55.1-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up linux-libc-dev:arm64 (6.4.11-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up binutils-aarch64-linux-gnu (2.41-4) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-3) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libuv1:amd64 (1.44.2-1) ... Setting up gcc-13-base:arm64 (13.2.0-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up gcc-13-cross-base (13.2.0-2cross1) ... Setting up libc6-arm64-cross (2.37-3cross1) ... Setting up libproc2-0:amd64 (2:4.0.3-1) ... Setting up autopoint (0.21-13) ... Setting up libjsoncpp25:amd64 (1.9.5-6) ... Setting up libitm1-arm64-cross (13.2.0-2cross1) ... Setting up libncursesw6:amd64 (6.4+20230625-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-3) ... Setting up autoconf (2.71-3) ... Setting up linux-libc-dev-arm64-cross (6.3.7-1cross1) ... Setting up sensible-utils (0.0.20) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.3-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.11.0-2) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-2cross1) ... Setting up cmake-data (3.27.2-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.189-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up libgcc-s1-arm64-cross (13.2.0-2cross1) ... Setting up libatomic1-arm64-cross (13.2.0-2cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (13.2.0-2cross1) ... Setting up libgomp1-arm64-cross (13.2.0-2cross1) ... Setting up gettext (0.21-13) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-2cross1) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libhwasan0-arm64-cross (13.2.0-2cross1) ... Setting up libc6-dev-arm64-cross (2.37-3cross1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (13.2.0-2cross1) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up libcurl4:amd64 (8.2.1-1) ... Setting up libasan8-arm64-cross (13.2.0-2cross1) ... Setting up libtsan2-arm64-cross (13.2.0-2cross1) ... Setting up libubsan1-arm64-cross (13.2.0-2cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-arm64-cross (13.2.0-2cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.27.2-1) ... Setting up debhelper (13.11.5) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-2cross1) ... Setting up libstdc++-13-dev-arm64-cross (13.2.0-2cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-2cross1) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.10) ... Setting up libgcc-s1:arm64 (13.2.0-2) ... Setting up libc6:arm64 (2.37-7) ... Setting up libhwasan0:arm64 (13.2.0-2) ... Setting up libstdc++6:arm64 (13.2.0-2) ... Setting up liblsan0:arm64 (13.2.0-2) ... Setting up libitm1:arm64 (13.2.0-2) ... Setting up libtsan0:arm64 (11.4.0-2) ... Setting up libkeyutils1:arm64 (1.6.3-2) ... Setting up libssl3:arm64 (3.0.10-1) ... Setting up zlib1g:arm64 (1:1.2.13.dfsg-3) ... Setting up libcrypt1:arm64 (1:4.4.36-2) ... Setting up libcom-err2:arm64 (1.47.0-2) ... Setting up libgomp1:arm64 (13.2.0-2) ... Setting up libasan6:arm64 (11.4.0-2) ... Setting up libkrb5support0:arm64 (1.20.1-3) ... Setting up libatomic1:arm64 (13.2.0-2) ... Setting up libk5crypto3:arm64 (1.20.1-3) ... Setting up libubsan1:arm64 (13.2.0-2) ... Setting up libgcc-11-dev:arm64 (11.4.0-2) ... Setting up libcrypt-dev:arm64 (1:4.4.36-2) ... Setting up libkrb5-3:arm64 (1.20.1-3) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-3) ... Setting up libtirpc3:arm64 (1.3.3+ds-1) ... Setting up libtirpc-dev:arm64 (1.3.3+ds-1) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.37-7) ... Setting up libstdc++-11-dev:arm64 (11.4.0-2) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-3) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any-amd64 arm64 ppc64el s390x ia64 ppc64 riscv64 sparc64 loong64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-9-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.27-1 (2023-05-08) amd64 (x86_64) Toolchain package versions: binutils_2.41-4 dpkg-dev_1.21.22 g++-11_11.4.0-2 g++-13_13.2.0-2 gcc-11_11.4.0-2 gcc-13_13.2.0-2 libc6-dev_2.37-7 libstdc++-11-dev_11.4.0-2 libstdc++-13-dev_13.2.0-2 libstdc++-13-dev-arm64-cross_13.2.0-2cross1 libstdc++6_13.2.0-2 libstdc++6-arm64-cross_13.2.0-2cross1 linux-libc-dev_6.4.11-1 Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b4 binutils_2.41-4 binutils-aarch64-linux-gnu_2.41-4 binutils-common_2.41-4 binutils-x86-64-linux-gnu_2.41-4 bsdextrautils_2.39.1-4 bsdutils_1:2.39.1-4 build-essential_12.10 bzip2_1.0.8-5+b1 cmake_3.27.2-1 cmake-data_3.27.2-1 coreutils_9.1-1 cpp_4:13.2.0-1 cpp-11_11.4.0-2 cpp-13_13.2.0-2 cpp-13-aarch64-linux-gnu_13.2.0-2cross1 cpp-aarch64-linux-gnu_4:13.2.0-1 cross-config_2.6.20 crossbuild-essential-arm64_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.5 debian-archive-keyring_2023.4 debianutils_5.8-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1 g++-11_11.4.0-2 g++-13_13.2.0-2 g++-13-aarch64-linux-gnu_13.2.0-2cross1 g++-aarch64-linux-gnu_4:13.2.0-1 gcc_4:13.2.0-1 gcc-11_11.4.0-2 gcc-11-base_11.4.0-2 gcc-12-base_12.3.0-7 gcc-13_13.2.0-2 gcc-13-aarch64-linux-gnu_13.2.0-2cross1 gcc-13-aarch64-linux-gnu-base_13.2.0-2cross1 gcc-13-base_13.2.0-2 gcc-13-cross-base_13.2.0-2cross1 gcc-9-base_9.5.0-4 gcc-aarch64-linux-gnu_4:13.2.0-1 gettext_0.21-13 gettext-base_0.21-13 gpgv_2.2.40-1.1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1 libasan6_11.4.0-2 libasan8_13.2.0-2 libasan8-arm64-cross_13.2.0-2cross1 libatomic1_13.2.0-2 libatomic1-arm64-cross_13.2.0-2cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-4 libblkid1_2.39.1-4 libbrotli1_1.0.9-2+b6 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-7 libc-dev-bin_2.37-7 libc6_2.37-7 libc6-arm64-cross_2.37-3cross1 libc6-dev_2.37-7 libc6-dev-arm64-cross_2.37-3cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_13.2.0-2 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-4 libctf0_2.41-4 libcurl4_8.2.1-1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.5 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.21.22 libelf1_0.189-4 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-2 libgcc-13-dev_13.2.0-2 libgcc-13-dev-arm64-cross_13.2.0-2cross1 libgcc-s1_13.2.0-2 libgcc-s1-arm64-cross_13.2.0-2cross1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-2 libgomp1-arm64-cross_13.2.0-2cross1 libgpg-error0_1.47-2 libgprofng0_2.41-4 libgssapi-krb5-2_1.20.1-3 libhogweed6_3.9.1-2 libhwasan0_13.2.0-2 libhwasan0-arm64-cross_13.2.0-2cross1 libicu72_72.1-3 libidn2-0_2.3.4-1 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Hash: SHA256 Format: 3.0 (quilt) Source: diamond-aligner Binary: diamond-aligner Architecture: any-amd64 arm64 ppc64el s390x ia64 ppc64 riscv64 sparc64 loong64 Version: 2.1.8-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bbuchfink/diamond Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/diamond-aligner Vcs-Git: https://salsa.debian.org/med-team/diamond-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper Package-List: diamond-aligner deb science optional arch=any-amd64,arm64,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,loong64 Checksums-Sha1: 6ac31371e93c554c86dc9cc38b118d33f61786d5 9449920 diamond-aligner_2.1.8.orig.tar.xz 1b92afcea0f485e41c224e2ab85d663cec956a54 128992 diamond-aligner_2.1.8-2.debian.tar.xz Checksums-Sha256: c8267f0cb1e09083fb51101cae4e3c6497a0562d20faeb37ee50e053cdf1c40c 9449920 diamond-aligner_2.1.8.orig.tar.xz c8864c4718d298faf2d621235a67adcad4f58c6a4a4eae115846f9e8cee1303e 128992 diamond-aligner_2.1.8-2.debian.tar.xz Files: 4b51d6eac3ece8db25221bd57438ee04 9449920 diamond-aligner_2.1.8.orig.tar.xz 643d410199fc098c178cef60391fb607 128992 diamond-aligner_2.1.8-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmTgkxcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEsfQ/+Nu4HqOzBcjEQw3DDOYJv/HpUXU7eI/ae J/1bV85qq2Tqgt2jJQVIJ5Fi+FQW10v2owqgxaHDXdAz3QIUFDm/RFn0JtRp7Utc aAhBVGCNjis5eep81/tM3MRSMQUnZiDFu+0FqAUqziHSyxbS7smTCZYC5v3Zbba0 Ska5Fyy4dwMZk7y67UQdN1RVJ/DaIAibiQTPK3SgXjV49leNqVLW1PdA/NQYauRa GHXLU6RyT5p3NLGUqhHVUDqIDp6U9upgwqD9/VX47BCPFgKQZU5RYvsvqJIhRe5y QlPG2NCZ0KnceRb3dRV5jYmz8P3ZLsJJDSPGCEbMDPelizbxsUweZARJZ4v+P/db kCDoOHrXksq49IXkX437IrL0/JujG0cZmb21poIVoAMleGMt+lNvzk/g4Q95kpz9 Q4joaxKSnah+WuJCoh7sxvQpGHdi1JxkII/lC1lzlPPmakJvWcNnhtWWMSMYnmQG M7oVYd/4yQETMjbxRUWKrU/W3JCpJFmCuM2/nHQsSmKeanFiKgfmkPJ4RWff1PS4 k9DGK/6us6HbZzxrknIt7f/Hd4veBRDjGVbLWdMOw5StB9taYgkjXJAiO7AiXBCa bXaLPiG2VRlh5A8mPkYELDe7LYswh9lBxNSHH9haVm5WXsp2lnz+yG+FDvKP6EZ3 Sv4lsRbcuQw= =+70X -----END PGP SIGNATURE----- gpgv: Signature made Sat Aug 19 10:01:59 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.8-2.dsc: no acceptable signature found dpkg-source: info: extracting diamond-aligner in /<> dpkg-source: info: unpacking diamond-aligner_2.1.8.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.8-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-5b166aad-5369-49d2-9a4a-7f55f771b2d4 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.8-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules 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CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -c /<>/src/dp/pfscan/pfscan.cpp [ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /<>/src/dp/swipe/anchored_wrapper.cpp [ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /<>/src/dp/score_profile.cpp make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 5%] Built target arch_generic make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 6%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/run/main.cpp.o -MF CMakeFiles/diamond.dir/src/run/main.cpp.o.d -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /<>/src/run/main.cpp [ 6%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/basic/config.cpp.o -MF CMakeFiles/diamond.dir/src/basic/config.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /<>/src/basic/config.cpp [ 7%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -MF CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -c /<>/src/stats/score_matrix.cpp [ 8%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/queries.cpp.o -MF CMakeFiles/diamond.dir/src/data/queries.cpp.o.d -o CMakeFiles/diamond.dir/src/data/queries.cpp.o -c /<>/src/data/queries.cpp [ 8%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -MF CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o.d -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /<>/src/data/seed_histogram.cpp In file included from /<>/src/data/seed_histogram.cpp:29: /<>/src/data/enum_seeds.h: In function ‘void enum_seeds_hashed(SequenceSet*, F*, unsigned int, unsigned int, const Filter*, const EnumCfg&)’: /<>/src/data/enum_seeds.h:86:36: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 86 | if (filter->contains(key, shape_id)) | ^ In file included from /<>/src/data/enum_seeds.h:6: /<>/src/data/../basic/seed_iterator.h: In member function ‘HashedSeedIterator& HashedSeedIterator::operator++() [with long unsigned int B = 4]’: /<>/src/data/../basic/seed_iterator.h:187:17: warning: control reaches end of non-void function [-Wreturn-type] 187 | ++ptr_; | ^~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 9%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o -c /<>/src/output/daa/daa_record.cpp In file included from /<>/src/output/daa/daa_record.cpp:21: /<>/src/output/daa/../output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/daa/../output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/daa/../output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/daa/../output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 9%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -MF CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o.d -o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -c /<>/src/util/command_line_parser.cpp /<>/src/util/command_line_parser.cpp: In member function ‘void CommandLineParser::print_documentation(int)’: /<>/src/util/command_line_parser.cpp:126:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 126 | for( int i = 0; i < opt.commands.size();i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ /<>/src/util/command_line_parser.cpp:127:32: warning: comparison of integer expressions of different signedness: ‘const __gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare] 127 | if(opt.commands[i] == command){ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 10%] Building CXX object CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o -MF CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o.d -o CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o -c /<>/src/util/seq_file_format.cpp [ 10%] Building CXX object CMakeFiles/diamond.dir/src/util/util.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/util.cpp.o -MF CMakeFiles/diamond.dir/src/util/util.cpp.o.d -o CMakeFiles/diamond.dir/src/util/util.cpp.o -c /<>/src/util/util.cpp /<>/src/util/util.cpp: In function ‘std::string print_char(char)’: /<>/src/util/util.cpp:168:25: warning: comparison is always true due to limited range of data type [-Wtype-limits] 168 | if (c < 32 && c >= 0) | ~~^~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 11%] Building CXX object CMakeFiles/diamond.dir/src/basic/basic.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/basic/basic.cpp.o -MF CMakeFiles/diamond.dir/src/basic/basic.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/basic.cpp.o -c /<>/src/basic/basic.cpp [ 12%] Building CXX object CMakeFiles/diamond.dir/src/basic/hssp.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/basic/hssp.cpp.o -MF CMakeFiles/diamond.dir/src/basic/hssp.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/hssp.cpp.o -c /<>/src/basic/hssp.cpp In file included from /<>/src/basic/hssp.cpp:24: /<>/src/basic/../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/basic/../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/basic/../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/basic/../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 12%] Building CXX object CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o -MF CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o.d -o CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o -c /<>/src/dp/ungapped_align.cpp [ 13%] Building CXX object CMakeFiles/diamond.dir/src/run/tools.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/run/tools.cpp.o -MF CMakeFiles/diamond.dir/src/run/tools.cpp.o.d -o CMakeFiles/diamond.dir/src/run/tools.cpp.o -c /<>/src/run/tools.cpp [ 13%] Building CXX object CMakeFiles/diamond.dir/src/chaining/greedy_align.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/chaining/greedy_align.cpp.o -MF CMakeFiles/diamond.dir/src/chaining/greedy_align.cpp.o.d -o CMakeFiles/diamond.dir/src/chaining/greedy_align.cpp.o -c /<>/src/chaining/greedy_align.cpp [ 14%] Building CXX object CMakeFiles/diamond.dir/src/output/output_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/output_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/output_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/output_format.cpp.o -c /<>/src/output/output_format.cpp In file included from /<>/src/output/output_format.cpp:31: /<>/src/output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 14%] Building CXX object CMakeFiles/diamond.dir/src/output/clustering_variables.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/clustering_variables.cpp.o -MF CMakeFiles/diamond.dir/src/output/clustering_variables.cpp.o.d -o CMakeFiles/diamond.dir/src/output/clustering_variables.cpp.o -c /<>/src/output/clustering_variables.cpp [ 15%] Building CXX object CMakeFiles/diamond.dir/src/output/clustering_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/clustering_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/clustering_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/clustering_format.cpp.o -c /<>/src/output/clustering_format.cpp [ 16%] Building CXX object CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o -MF CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o.d -o CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o -c /<>/src/output/join_blocks.cpp In file included from /<>/src/output/join_blocks.cpp:25: /<>/src/output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ /<>/src/output/join_blocks.cpp: In function ‘void join_query(std::vector&, TextBuffer&, Statistics&, unsigned int, const char*, unsigned int, OutputFormat&, const Search::Config&)’: /<>/src/output/join_blocks.cpp:220:88: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 220 | Output::Info info = { cfg.query->seq_info(query), false, cfg.db.get(), out, {} }; | ^ /<>/src/output/join_blocks.cpp: In function ‘void join_worker(TaskQueue*, const Search::Config*, BitVector*)’: /<>/src/output/join_blocks.cpp:298:115: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 298 | Output::Info info{ cfg->query->seq_info(i), true, cfg->db.get(), *out, {} }; | ^ /<>/src/output/join_blocks.cpp:306:115: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 306 | Output::Info info{ cfg->query->seq_info(fetcher.query_id), false, cfg->db.get(), *out, {} }; | ^ /<>/src/output/join_blocks.cpp: In function ‘void join_blocks(int64_t, Consumer&, const PtrVector&, Search::Config&, SequenceFile&, std::vector >)’: /<>/src/output/join_blocks.cpp:367:96: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 367 | Output::Info info{ cfg.query->seq_info(i), true, cfg.db.get(), out, {} }; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 16%] Building CXX object CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o -MF CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o.d -o CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o -c /<>/src/data/frequent_seeds.cpp [ 17%] Building CXX object CMakeFiles/diamond.dir/src/align/legacy/query_mapper.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/legacy/query_mapper.cpp.o -MF CMakeFiles/diamond.dir/src/align/legacy/query_mapper.cpp.o.d -o CMakeFiles/diamond.dir/src/align/legacy/query_mapper.cpp.o -c /<>/src/align/legacy/query_mapper.cpp In file included from /<>/src/align/legacy/query_mapper.cpp:27: /<>/src/align/legacy/../../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/align/legacy/../../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/align/legacy/../../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/align/legacy/../../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ /<>/src/align/legacy/query_mapper.cpp: In member function ‘bool QueryMapper::generate_output(TextBuffer&, Statistics&, const Search::Config&)’: /<>/src/align/legacy/query_mapper.cpp:226:90: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 226 | Output::Info info{ cfg.query->seq_info(query_id), true, cfg.db.get(), buffer, {} }; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 17%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o -c /<>/src/output/blast_tab_format.cpp [ 18%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o -c /<>/src/output/blast_pairwise_format.cpp [ 18%] Building CXX object CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o -MF CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o.d -o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o -c /<>/src/run/double_indexed.cpp In file included from /<>/src/run/../output/daa/daa_write.h:24, from /<>/src/run/double_indexed.cpp:38: /<>/src/run/../output/daa/../output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/run/../output/daa/../output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/run/../output/daa/../output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/run/../output/daa/../output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 19%] Building CXX object CMakeFiles/diamond.dir/src/output/sam_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/sam_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/sam_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o -c /<>/src/output/sam_format.cpp [ 20%] Building CXX object CMakeFiles/diamond.dir/src/align/align.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/align.cpp.o -MF CMakeFiles/diamond.dir/src/align/align.cpp.o.d -o CMakeFiles/diamond.dir/src/align/align.cpp.o -c /<>/src/align/align.cpp In file included from /<>/src/align/align.cpp:26: /<>/src/align/../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/align/../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/align/../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/align/../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ /<>/src/align/align.cpp: In function ‘TextBuffer* legacy_pipeline(const HitIterator::Hits&, Search::Config&, Statistics&)’: /<>/src/align/align.cpp:192:106: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 192 | Output::Info info{ cfg.query->seq_info(hits.query), true, cfg.db.get(), *buf, {} }; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 20%] Building CXX object CMakeFiles/diamond.dir/src/search/setup.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/search/setup.cpp.o -MF CMakeFiles/diamond.dir/src/search/setup.cpp.o.d -o CMakeFiles/diamond.dir/src/search/setup.cpp.o -c /<>/src/search/setup.cpp [ 21%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o -MF CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o.d -o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o -c /<>/src/data/taxonomy.cpp [ 21%] Building CXX object CMakeFiles/diamond.dir/src/masking/masking.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/masking/masking.cpp.o -MF CMakeFiles/diamond.dir/src/masking/masking.cpp.o.d -o CMakeFiles/diamond.dir/src/masking/masking.cpp.o -c /<>/src/masking/masking.cpp [ 22%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_set.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/seed_set.cpp.o -MF CMakeFiles/diamond.dir/src/data/seed_set.cpp.o.d -o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o -c /<>/src/data/seed_set.cpp In file included from /<>/src/data/seed_set.cpp:28: /<>/src/data/enum_seeds.h: In function ‘void enum_seeds_hashed(SequenceSet*, F*, unsigned int, unsigned int, const Filter*, const EnumCfg&)’: /<>/src/data/enum_seeds.h:86:36: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 86 | if (filter->contains(key, shape_id)) | ^ In file included from /<>/src/data/enum_seeds.h:6: /<>/src/data/../basic/seed_iterator.h: In member function ‘HashedSeedIterator& HashedSeedIterator::operator++() [with long unsigned int B = 4]’: /<>/src/data/../basic/seed_iterator.h:187:17: warning: control reaches end of non-void function [-Wreturn-type] 187 | ++ptr_; | ^~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 22%] Building CXX object CMakeFiles/diamond.dir/src/util/simd.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/simd.cpp.o -MF CMakeFiles/diamond.dir/src/util/simd.cpp.o.d -o CMakeFiles/diamond.dir/src/util/simd.cpp.o -c /<>/src/util/simd.cpp [ 23%] Building CXX object CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o -c /<>/src/output/taxon_format.cpp [ 24%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/view.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/view.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/view.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/view.cpp.o -c /<>/src/output/daa/view.cpp In file included from /<>/src/output/daa/daa_write.h:24, from /<>/src/output/daa/view.cpp:34: /<>/src/output/daa/../output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/daa/../output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/daa/../output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/daa/../output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ /<>/src/output/daa/view.cpp: In function ‘void view_query(DAA_query_record&, TextBuffer&, OutputFormat&, const Search::Config&)’: /<>/src/output/daa/view.cpp:89:183: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 89 | Output::Info info{ SeqInfo { (BlockId)r.query_num, (OId)r.query_num, r.query_name.c_str(), "", (Loc)r.query_len(), r.query_seq.source(), Sequence()}, false, nullptr, out, {} }; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 24%] Building CXX object CMakeFiles/diamond.dir/src/output/output_sink.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/output_sink.cpp.o -MF CMakeFiles/diamond.dir/src/output/output_sink.cpp.o.d -o CMakeFiles/diamond.dir/src/output/output_sink.cpp.o -c /<>/src/output/output_sink.cpp In file included from /<>/src/output/output_sink.cpp:21: /<>/src/output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 25%] Building CXX object CMakeFiles/diamond.dir/src/output/target_culling.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/target_culling.cpp.o -MF CMakeFiles/diamond.dir/src/output/target_culling.cpp.o.d -o CMakeFiles/diamond.dir/src/output/target_culling.cpp.o -c /<>/src/output/target_culling.cpp In file included from /<>/src/output/target_culling.h:28, from /<>/src/output/target_culling.cpp:19: /<>/src/output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 25%] Building CXX object CMakeFiles/diamond.dir/src/align/legacy/banded_swipe_pipeline.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/legacy/banded_swipe_pipeline.cpp.o -MF CMakeFiles/diamond.dir/src/align/legacy/banded_swipe_pipeline.cpp.o.d -o CMakeFiles/diamond.dir/src/align/legacy/banded_swipe_pipeline.cpp.o -c /<>/src/align/legacy/banded_swipe_pipeline.cpp [ 26%] Building CXX object CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o -c /<>/src/util/io/compressed_stream.cpp [ 27%] Building CXX object CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o -c /<>/src/util/io/deserializer.cpp [ 27%] Building CXX object CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o -c /<>/src/util/io/file_sink.cpp [ 28%] Building CXX object CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o -c /<>/src/util/io/file_source.cpp [ 28%] Building CXX object CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o -c 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-I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o -c /<>/src/util/io/output_file.cpp [ 30%] Building CXX object CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o -c /<>/src/util/io/output_stream_buffer.cpp [ 31%] Building CXX object CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o -c /<>/src/util/io/serializer.cpp [ 31%] Building CXX object CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o -c /<>/src/util/io/temp_file.cpp [ 32%] Building CXX object CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o -MF CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o.d -o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o -c /<>/src/util/io/text_input_file.cpp [ 32%] Building CXX object CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o -MF CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o.d -o CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o -c /<>/src/data/taxon_list.cpp [ 33%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o -MF CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o.d -o CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o -c /<>/src/data/taxonomy_nodes.cpp [ 33%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o -c /<>/src/util/algo/MurmurHash3.cpp [ 34%] Building CXX object CMakeFiles/diamond.dir/src/search/stage0.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/search/stage0.cpp.o -MF CMakeFiles/diamond.dir/src/search/stage0.cpp.o.d -o CMakeFiles/diamond.dir/src/search/stage0.cpp.o -c /<>/src/search/stage0.cpp [ 35%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_array.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/seed_array.cpp.o -MF CMakeFiles/diamond.dir/src/data/seed_array.cpp.o.d -o CMakeFiles/diamond.dir/src/data/seed_array.cpp.o -c /<>/src/data/seed_array.cpp In file included from /<>/src/data/seed_array.cpp:26: /<>/src/data/enum_seeds.h: In function ‘void enum_seeds_hashed(SequenceSet*, F*, unsigned int, unsigned int, const Filter*, const EnumCfg&)’: /<>/src/data/enum_seeds.h:86:36: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 86 | if (filter->contains(key, shape_id)) | ^ In file included from /<>/src/data/enum_seeds.h:6: /<>/src/data/../basic/seed_iterator.h: In member function ‘HashedSeedIterator& HashedSeedIterator::operator++() [with long unsigned int B = 4]’: /<>/src/data/../basic/seed_iterator.h:187:17: warning: control reaches end of non-void function [-Wreturn-type] 187 | ++ptr_; | ^~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 35%] Building CXX object CMakeFiles/diamond.dir/src/output/paf_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/paf_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -c /<>/src/output/paf_format.cpp [ 36%] Building CXX object CMakeFiles/diamond.dir/src/util/system/system.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/system/system.cpp.o -MF CMakeFiles/diamond.dir/src/util/system/system.cpp.o.d -o CMakeFiles/diamond.dir/src/util/system/system.cpp.o -c /<>/src/util/system/system.cpp [ 36%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o -c /<>/src/util/algo/greedy_vertex_cover.cpp [ 37%] Building CXX object CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o -MF CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o.d -o CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o -c /<>/src/util/sequence/sequence.cpp [ 37%] Building CXX object CMakeFiles/diamond.dir/src/tools/tsv_record.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/tsv_record.cpp.o -MF CMakeFiles/diamond.dir/src/tools/tsv_record.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/tsv_record.cpp.o -c /<>/src/tools/tsv_record.cpp [ 38%] Building CXX object CMakeFiles/diamond.dir/src/tools/tools.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/tools.cpp.o -MF CMakeFiles/diamond.dir/src/tools/tools.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/tools.cpp.o -c /<>/src/tools/tools.cpp In file included from /<>/src/tools/tools.cpp:18: /<>/src/tools/../data/enum_seeds.h: In function ‘void enum_seeds_hashed(SequenceSet*, F*, unsigned int, unsigned int, const Filter*, const EnumCfg&)’: /<>/src/tools/../data/enum_seeds.h:86:36: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 86 | if (filter->contains(key, shape_id)) | ^ In file included from /<>/src/tools/../data/enum_seeds.h:6: /<>/src/tools/../data/../basic/seed_iterator.h: In member function ‘HashedSeedIterator& HashedSeedIterator::operator++() [with long unsigned int B = 4]’: /<>/src/tools/../data/../basic/seed_iterator.h:187:17: warning: control reaches end of non-void function [-Wreturn-type] 187 | ++ptr_; | ^~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 39%] Building CXX object CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o -MF CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o.d -o CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o -c /<>/src/util/system/getRSS.cpp [ 39%] Building CXX object CMakeFiles/diamond.dir/src/lib/tantan/LambdaCalculator.cc.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/tantan/LambdaCalculator.cc.o -MF CMakeFiles/diamond.dir/src/lib/tantan/LambdaCalculator.cc.o.d -o CMakeFiles/diamond.dir/src/lib/tantan/LambdaCalculator.cc.o -c /<>/src/lib/tantan/LambdaCalculator.cc [ 40%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/edge_vec.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/algo/edge_vec.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/edge_vec.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/edge_vec.cpp.o -c /<>/src/util/algo/edge_vec.cpp [ 40%] Building CXX object CMakeFiles/diamond.dir/src/util/string/string.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/string/string.cpp.o -MF CMakeFiles/diamond.dir/src/util/string/string.cpp.o.d -o CMakeFiles/diamond.dir/src/util/string/string.cpp.o -c /<>/src/util/string/string.cpp [ 41%] Building CXX object CMakeFiles/diamond.dir/src/align/extend.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/extend.cpp.o -c /<>/src/align/extend.cpp In file included from /<>/src/align/global_ranking/global_ranking.h:21, from /<>/src/align/extend.cpp:36: /<>/src/align/global_ranking/../../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/align/global_ranking/../../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/align/global_ranking/../../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/align/global_ranking/../../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 41%] Building CXX object CMakeFiles/diamond.dir/src/test/test.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/test/test.cpp.o -MF CMakeFiles/diamond.dir/src/test/test.cpp.o.d -o CMakeFiles/diamond.dir/src/test/test.cpp.o -c /<>/src/test/test.cpp [ 42%] Building CXX object CMakeFiles/diamond.dir/src/align/ungapped.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/ungapped.cpp.o -MF CMakeFiles/diamond.dir/src/align/ungapped.cpp.o.d -o CMakeFiles/diamond.dir/src/align/ungapped.cpp.o -c /<>/src/align/ungapped.cpp [ 43%] Building CXX object CMakeFiles/diamond.dir/src/align/gapped_score.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/gapped_score.cpp.o -MF CMakeFiles/diamond.dir/src/align/gapped_score.cpp.o.d -o CMakeFiles/diamond.dir/src/align/gapped_score.cpp.o -c /<>/src/align/gapped_score.cpp [ 43%] Building CXX object CMakeFiles/diamond.dir/src/align/gapped_final.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/gapped_final.cpp.o -MF CMakeFiles/diamond.dir/src/align/gapped_final.cpp.o.d -o CMakeFiles/diamond.dir/src/align/gapped_final.cpp.o -c /<>/src/align/gapped_final.cpp [ 44%] Building CXX object CMakeFiles/diamond.dir/src/align/full_db.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/full_db.cpp.o -MF CMakeFiles/diamond.dir/src/align/full_db.cpp.o.d -o CMakeFiles/diamond.dir/src/align/full_db.cpp.o -c /<>/src/align/full_db.cpp [ 44%] Building CXX object CMakeFiles/diamond.dir/src/align/culling.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/culling.cpp.o -MF CMakeFiles/diamond.dir/src/align/culling.cpp.o.d -o CMakeFiles/diamond.dir/src/align/culling.cpp.o -c /<>/src/align/culling.cpp [ 45%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cluster_registry.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/cluster_registry.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/cluster_registry.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/cluster_registry.cpp.o -c /<>/src/cluster/cluster_registry.cpp [ 45%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cascaded/cascaded.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/cascaded/cascaded.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/cascaded/cascaded.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/cascaded/cascaded.cpp.o -c /<>/src/cluster/cascaded/cascaded.cpp [ 46%] Building CXX object CMakeFiles/diamond.dir/src/align/output.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/output.cpp.o -MF CMakeFiles/diamond.dir/src/align/output.cpp.o.d -o CMakeFiles/diamond.dir/src/align/output.cpp.o -c /<>/src/align/output.cpp In file included from /<>/src/align/../output/daa/daa_write.h:24, from /<>/src/align/output.cpp:26: /<>/src/align/../output/daa/../output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/align/../output/daa/../output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/align/../output/daa/../output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/align/../output/daa/../output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ /<>/src/align/output.cpp: In function ‘TextBuffer* Extension::generate_output(std::vector&, const Stats&, BlockId, Statistics&, const Search::Config&)’: /<>/src/align/output.cpp:41:108: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 41 | Output::Info info{ cfg.query->seq_info(query_block_id), targets.empty(), cfg.db.get(), *out, stats }; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 47%] Building CXX object CMakeFiles/diamond.dir/src/tools/roc.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/roc.cpp.o -MF CMakeFiles/diamond.dir/src/tools/roc.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/roc.cpp.o -c /<>/src/tools/roc.cpp [ 47%] Building CXX object CMakeFiles/diamond.dir/src/test/data.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/test/data.cpp.o -MF CMakeFiles/diamond.dir/src/test/data.cpp.o.d -o CMakeFiles/diamond.dir/src/test/data.cpp.o -c /<>/src/test/data.cpp [ 48%] Building CXX object CMakeFiles/diamond.dir/src/test/test_cases.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/test/test_cases.cpp.o -MF CMakeFiles/diamond.dir/src/test/test_cases.cpp.o.d -o CMakeFiles/diamond.dir/src/test/test_cases.cpp.o -c /<>/src/test/test_cases.cpp [ 48%] Building CXX object CMakeFiles/diamond.dir/src/chaining/smith_waterman.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/chaining/smith_waterman.cpp.o -MF CMakeFiles/diamond.dir/src/chaining/smith_waterman.cpp.o.d -o CMakeFiles/diamond.dir/src/chaining/smith_waterman.cpp.o -c /<>/src/chaining/smith_waterman.cpp [ 49%] Building CXX object CMakeFiles/diamond.dir/src/output/xml_format.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/xml_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/xml_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/xml_format.cpp.o -c /<>/src/output/xml_format.cpp [ 50%] Building CXX object CMakeFiles/diamond.dir/src/align/gapped_filter.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/gapped_filter.cpp.o -MF CMakeFiles/diamond.dir/src/align/gapped_filter.cpp.o.d -o CMakeFiles/diamond.dir/src/align/gapped_filter.cpp.o -c /<>/src/align/gapped_filter.cpp [ 50%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o -MF CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o.d -o CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o -c /<>/src/util/parallel/filestack.cpp [ 51%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o -MF CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o.d -o CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o -c /<>/src/util/parallel/parallelizer.cpp [ 51%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o -MF CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o.d -o CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o -c /<>/src/util/parallel/multiprocessing.cpp [ 52%] Building CXX object CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o -MF CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o -c /<>/src/tools/benchmark_io.cpp [ 52%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprob.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprob.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprob.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprob.cpp.o -c /<>/src/lib/alp/njn_dynprogprob.cpp [ 53%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -c /<>/src/lib/alp/njn_dynprogproblim.cpp In file included from /<>/src/lib/alp/njn_dynprogproblim.hpp:39, from /<>/src/lib/alp/njn_dynprogproblim.cpp:37: /<>/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /<>/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /<>/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 54%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -c /<>/src/lib/alp/njn_dynprogprobproto.cpp [ 54%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -c /<>/src/lib/alp/njn_ioutil.cpp [ 55%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -c /<>/src/lib/alp/njn_localmaxstat.cpp In file included from /<>/src/lib/alp/njn_dynprogproblim.hpp:39, from /<>/src/lib/alp/njn_localmaxstat.cpp:39: /<>/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /<>/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /<>/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 55%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -c /<>/src/lib/alp/njn_localmaxstatmatrix.cpp [ 56%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -c /<>/src/lib/alp/njn_localmaxstatutil.cpp In file included from /<>/src/lib/alp/njn_dynprogproblim.hpp:39, from /<>/src/lib/alp/njn_localmaxstatutil.cpp:39: /<>/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /<>/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /<>/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /<>/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 56%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -c /<>/src/lib/alp/njn_random.cpp [ 57%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o.d -o 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-DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /<>/src/lib/alp/sls_alp_data.cpp [ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /<>/src/lib/alp/sls_alp_regression.cpp [ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /<>/src/lib/alp/sls_alp_sim.cpp [ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -c /<>/src/lib/alp/sls_basic.cpp [ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -c /<>/src/lib/alp/sls_pvalues.cpp [ 61%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -c /<>/src/align/global_ranking/global_ranking.cpp In file included from /<>/src/align/global_ranking/global_ranking.h:21, from /<>/src/align/global_ranking/global_ranking.cpp:22: /<>/src/align/global_ranking/../../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/align/global_ranking/../../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/align/global_ranking/../../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/align/global_ranking/../../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 62%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -c /<>/src/align/global_ranking/extend.cpp In file included from /<>/src/align/global_ranking/global_ranking.h:21, from /<>/src/align/global_ranking/extend.cpp:26: /<>/src/align/global_ranking/../../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/align/global_ranking/../../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/align/global_ranking/../../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/align/global_ranking/../../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 62%] Building CXX object CMakeFiles/diamond.dir/src/tools/rocid.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -MF CMakeFiles/diamond.dir/src/tools/rocid.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -c /<>/src/tools/rocid.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o -c /<>/src/stats/hauser_correction.cpp [ 71%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o -c /<>/src/stats/matrix_adjust.cpp [ 72%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o 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-D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/index.cpp.o -MF CMakeFiles/diamond.dir/src/data/index.cpp.o.d -o CMakeFiles/diamond.dir/src/data/index.cpp.o -c /<>/src/data/index.cpp [ 73%] Building CXX object CMakeFiles/diamond.dir/src/data/dmnd/dmnd.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/dmnd/dmnd.cpp.o -MF CMakeFiles/diamond.dir/src/data/dmnd/dmnd.cpp.o.d -o CMakeFiles/diamond.dir/src/data/dmnd/dmnd.cpp.o -c /<>/src/data/dmnd/dmnd.cpp [ 74%] Building CXX object CMakeFiles/diamond.dir/src/data/sequence_file.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/sequence_file.cpp.o -MF CMakeFiles/diamond.dir/src/data/sequence_file.cpp.o.d -o CMakeFiles/diamond.dir/src/data/sequence_file.cpp.o -c /<>/src/data/sequence_file.cpp [ 74%] Building CXX object CMakeFiles/diamond.dir/src/tools/find_shapes.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/find_shapes.cpp.o -MF CMakeFiles/diamond.dir/src/tools/find_shapes.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/find_shapes.cpp.o -c /<>/src/tools/find_shapes.cpp [ 75%] Building CXX object CMakeFiles/diamond.dir/src/data/block/block.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/block/block.cpp.o -MF CMakeFiles/diamond.dir/src/data/block/block.cpp.o.d -o CMakeFiles/diamond.dir/src/data/block/block.cpp.o -c /<>/src/data/block/block.cpp [ 75%] Building CXX object CMakeFiles/diamond.dir/src/data/block/block_wrapper.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/block/block_wrapper.cpp.o -MF CMakeFiles/diamond.dir/src/data/block/block_wrapper.cpp.o.d -o CMakeFiles/diamond.dir/src/data/block/block_wrapper.cpp.o -c /<>/src/data/block/block_wrapper.cpp [ 76%] Building CXX object CMakeFiles/diamond.dir/src/run/config.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/run/config.cpp.o -MF CMakeFiles/diamond.dir/src/run/config.cpp.o.d -o CMakeFiles/diamond.dir/src/run/config.cpp.o -c /<>/src/run/config.cpp In file included from /<>/src/run/../align/global_ranking/global_ranking.h:21, from /<>/src/run/config.cpp:10: /<>/src/run/../align/global_ranking/../../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/run/../align/global_ranking/../../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/run/../align/global_ranking/../../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/run/../align/global_ranking/../../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 77%] Building CXX object CMakeFiles/diamond.dir/src/data/sequence_set.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/sequence_set.cpp.o -MF CMakeFiles/diamond.dir/src/data/sequence_set.cpp.o.d -o CMakeFiles/diamond.dir/src/data/sequence_set.cpp.o -c /<>/src/data/sequence_set.cpp [ 77%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/table.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/table.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/table.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/table.cpp.o -c /<>/src/align/global_ranking/table.cpp In file included from /<>/src/align/global_ranking/global_ranking.h:21, from /<>/src/align/global_ranking/table.cpp:21: /<>/src/align/global_ranking/../../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/align/global_ranking/../../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/align/global_ranking/../../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/align/global_ranking/../../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 78%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/daa_write.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/daa_write.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/daa_write.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/daa_write.cpp.o -c /<>/src/output/daa/daa_write.cpp In file included from /<>/src/output/daa/daa_write.h:24, from /<>/src/output/daa/daa_write.cpp:1: /<>/src/output/daa/../output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/daa/../output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/daa/../output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/daa/../output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 78%] Building CXX object CMakeFiles/diamond.dir/src/search/seed_complexity.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/search/seed_complexity.cpp.o -MF CMakeFiles/diamond.dir/src/search/seed_complexity.cpp.o.d -o CMakeFiles/diamond.dir/src/search/seed_complexity.cpp.o -c /<>/src/search/seed_complexity.cpp [ 79%] Building CXX object CMakeFiles/diamond.dir/src/tools/view.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/view.cpp.o -MF CMakeFiles/diamond.dir/src/tools/view.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/view.cpp.o -c /<>/src/tools/view.cpp In file included from /<>/src/tools/view.cpp:10: /<>/src/tools/../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/tools/../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/tools/../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/tools/../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ /<>/src/tools/view.cpp: In function ‘TextBuffer* view_query(const std::string&, const std::string&, SequenceFile&, SequenceFile&, Search::Config&, Statistics&)’: /<>/src/tools/view.cpp:101:154: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 101 | Output::Info info{ SeqInfo { 0, 0, query_acc.c_str(), "", query_seq.source().length(), query_seq.source(), Sequence()}, false, nullptr, *out, {} }; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 79%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/tsv.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/tsv.cpp.o -MF CMakeFiles/diamond.dir/src/util/tsv/tsv.cpp.o.d -o CMakeFiles/diamond.dir/src/util/tsv/tsv.cpp.o -c /<>/src/util/tsv/tsv.cpp [ 80%] Building CXX object CMakeFiles/diamond.dir/src/tools/join.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/join.cpp.o -MF CMakeFiles/diamond.dir/src/tools/join.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/join.cpp.o -c /<>/src/tools/join.cpp [ 81%] Building CXX object CMakeFiles/diamond.dir/src/basic/value.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/basic/value.cpp.o -MF CMakeFiles/diamond.dir/src/basic/value.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/value.cpp.o -c /<>/src/basic/value.cpp [ 81%] Building CXX object CMakeFiles/diamond.dir/src/masking/motifs.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/masking/motifs.cpp.o -MF CMakeFiles/diamond.dir/src/masking/motifs.cpp.o.d -o CMakeFiles/diamond.dir/src/masking/motifs.cpp.o -c /<>/src/masking/motifs.cpp [ 82%] Building CXX object CMakeFiles/diamond.dir/src/align/alt_hsp.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/alt_hsp.cpp.o -MF CMakeFiles/diamond.dir/src/align/alt_hsp.cpp.o.d -o CMakeFiles/diamond.dir/src/align/alt_hsp.cpp.o -c /<>/src/align/alt_hsp.cpp [ 82%] Building CXX object CMakeFiles/diamond.dir/src/data/fasta/fasta_file.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/fasta/fasta_file.cpp.o -MF CMakeFiles/diamond.dir/src/data/fasta/fasta_file.cpp.o.d -o CMakeFiles/diamond.dir/src/data/fasta/fasta_file.cpp.o -c /<>/src/data/fasta/fasta_file.cpp [ 83%] Building CXX object CMakeFiles/diamond.dir/src/cluster/output.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/output.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/output.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/output.cpp.o -c /<>/src/cluster/output.cpp In file included from /<>/src/cluster/output.cpp:31: /<>/src/cluster/../output/output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/cluster/../output/output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/cluster/../output/output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/cluster/../output/output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 83%] Building CXX object CMakeFiles/diamond.dir/src/cluster/realign.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/realign.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/realign.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/realign.cpp.o -c /<>/src/cluster/realign.cpp /<>/src/cluster/realign.cpp: In lambda function: /<>/src/cluster/realign.cpp:76:71: warning: missing initializer for member ‘Output::Info::acc_stats’ [-Wmissing-field-initializers] 76 | Output::Info info{ SeqInfo(), false, nullptr, buf, {} }; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 84%] Building CXX object CMakeFiles/diamond.dir/src/cluster/reassign.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/reassign.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/reassign.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/reassign.cpp.o -c /<>/src/cluster/reassign.cpp [ 85%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/read_tsv.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/read_tsv.cpp.o -MF CMakeFiles/diamond.dir/src/util/tsv/read_tsv.cpp.o.d -o CMakeFiles/diamond.dir/src/util/tsv/read_tsv.cpp.o -c /<>/src/util/tsv/read_tsv.cpp [ 85%] Building CXX object CMakeFiles/diamond.dir/src/tools/greedy_vertex_cover.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/greedy_vertex_cover.cpp.o -MF CMakeFiles/diamond.dir/src/tools/greedy_vertex_cover.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/greedy_vertex_cover.cpp.o -c /<>/src/tools/greedy_vertex_cover.cpp [ 86%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cascaded/recluster.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 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CXX object CMakeFiles/diamond.dir/src/search/kmer_ranking.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/search/kmer_ranking.cpp.o -MF CMakeFiles/diamond.dir/src/search/kmer_ranking.cpp.o.d -o CMakeFiles/diamond.dir/src/search/kmer_ranking.cpp.o -c /<>/src/search/kmer_ranking.cpp [ 87%] Building CXX object CMakeFiles/diamond.dir/src/chaining/hamming_ext.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/chaining/hamming_ext.cpp.o -MF CMakeFiles/diamond.dir/src/chaining/hamming_ext.cpp.o.d -o CMakeFiles/diamond.dir/src/chaining/hamming_ext.cpp.o -c /<>/src/chaining/hamming_ext.cpp [ 88%] Building CXX object CMakeFiles/diamond.dir/src/dna/smith_watermann.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 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-O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o -c /<>/src/lib/blast/blast_stat.cpp [ 90%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o -c /<>/src/lib/blast/blastn_score.cpp [ 91%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/ncbi_std.cpp.o -c /<>/src/lib/blast/ncbi_std.cpp [ 91%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o -MF CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o.d -o CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o -c /<>/src/util/tsv/table.cpp [ 92%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/file.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 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/<>/src/cluster/cascaded/helpers.cpp [ 94%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o -c /<>/src/cluster/cascaded/wrapper.cpp [ 94%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -c /<>/src/output/daa/merge.cpp In file included from /<>/src/output/daa/daa_write.h:24, from /<>/src/output/daa/merge.cpp:24: /<>/src/output/daa/../output.h: In constructor ‘OutputWriter::OutputWriter(Consumer*, char, bool)’: /<>/src/output/daa/../output.h:112:10: warning: ‘OutputWriter::sep’ will be initialized after [-Wreorder] 112 | char sep; | ^~~ /<>/src/output/daa/../output.h:111:10: warning: ‘bool OutputWriter::first’ [-Wreorder] 111 | bool first; | ^~~~~ /<>/src/output/daa/../output.h:97:5: warning: when initialized here [-Wreorder] 97 | OutputWriter(Consumer* file_, char sep = char(0), bool first = true): | ^~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 95%] Building CXX object CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o -MF CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o.d -o CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o -c /<>/src/chaining/backtrace.cpp [ 95%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o -MF CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o.d -o CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o -c /<>/src/util/tsv/merge.cpp [ 96%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/join.cpp.o /usr/bin/aarch64-linux-gnu-g++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/<>/src/lib -g -O2 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[100%] Built target diamond make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/diamond-aligner/ -a cd obj-aarch64-linux-gnu && make -j1 install DESTDIR=/<>/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.8-2_arm64.deb'. dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.8-2_arm64.deb'. dpkg-genbuildinfo --build=any -O../diamond-aligner_2.1.8-2_arm64.buildinfo dpkg-genchanges --build=any -O../diamond-aligner_2.1.8-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-20T17:20:54Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ diamond-aligner_2.1.8-2_arm64.changes: -------------------------------------- Format: 1.8 Date: Sat, 19 Aug 2023 11:56:22 +0200 Source: diamond-aligner Binary: diamond-aligner diamond-aligner-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.1.8-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: diamond-aligner - accelerated BLAST compatible local sequence aligner Changes: diamond-aligner (2.1.8-2) unstable; urgency=medium . [ Dandan Zhang ] * Add LoongArch support Checksums-Sha1: 3222bd20b9c205f62a3b1120f58eb4bc5a2e5bd9 28213228 diamond-aligner-dbgsym_2.1.8-2_arm64.deb eb5ee0fb2f4b2101e2c6f0c45e92a777385dd472 6062 diamond-aligner_2.1.8-2_arm64.buildinfo efded6689861ba1e7c4a476bcf8f1eb4a6fc522b 1610048 diamond-aligner_2.1.8-2_arm64.deb Checksums-Sha256: 9a3443fb2e68c80fced7380b7b535623fd26cf97d4e8ba3faf440f9a74bdcb57 28213228 diamond-aligner-dbgsym_2.1.8-2_arm64.deb 8a575ac12b93a7dc6d69ffbba3bc817a760ec5ef771762e6a81bd396b62f63d0 6062 diamond-aligner_2.1.8-2_arm64.buildinfo 49d6f40f5445856340cd6124d1f1dad3d85e1078250c7f9cc3f8d1d187c16399 1610048 diamond-aligner_2.1.8-2_arm64.deb Files: 07ed5564dec479886e8bd539d29c90ee 28213228 debug optional diamond-aligner-dbgsym_2.1.8-2_arm64.deb 4f7af55f653b3016ca463e1bb914cf9c 6062 science optional diamond-aligner_2.1.8-2_arm64.buildinfo 578a86affe83cd2a6afd58477363dd46 1610048 science optional diamond-aligner_2.1.8-2_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: diamond-aligner Binary: diamond-aligner diamond-aligner-dbgsym Architecture: arm64 Version: 2.1.8-2 Checksums-Md5: 07ed5564dec479886e8bd539d29c90ee 28213228 diamond-aligner-dbgsym_2.1.8-2_arm64.deb 578a86affe83cd2a6afd58477363dd46 1610048 diamond-aligner_2.1.8-2_arm64.deb Checksums-Sha1: 3222bd20b9c205f62a3b1120f58eb4bc5a2e5bd9 28213228 diamond-aligner-dbgsym_2.1.8-2_arm64.deb efded6689861ba1e7c4a476bcf8f1eb4a6fc522b 1610048 diamond-aligner_2.1.8-2_arm64.deb Checksums-Sha256: 9a3443fb2e68c80fced7380b7b535623fd26cf97d4e8ba3faf440f9a74bdcb57 28213228 diamond-aligner-dbgsym_2.1.8-2_arm64.deb 49d6f40f5445856340cd6124d1f1dad3d85e1078250c7f9cc3f8d1d187c16399 1610048 diamond-aligner_2.1.8-2_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 20 Aug 2023 17:20:53 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.1), bash (= 5.2.15-2+b4), binutils (= 2.41-4), binutils-common (= 2.41-4), binutils-x86-64-linux-gnu (= 2.41-4), bsdextrautils (= 2.39.1-4), bsdutils (= 1:2.39.1-4), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), cmake (= 3.27.2-1), cmake-data (= 3.27.2-1), coreutils (= 9.1-1), cpp (= 4:13.2.0-1), cpp-11 (= 11.4.0-2), cpp-13 (= 13.2.0-2), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.5), debianutils (= 5.8-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-2), gcc (= 4:13.2.0-1), gcc-11 (= 11.4.0-2), gcc-11-base (= 11.4.0-2), gcc-13 (= 13.2.0-2), gcc-13-base (= 13.2.0-2), gettext (= 0.21-13), gettext-base (= 0.21-13), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1), libasan6 (= 11.4.0-2), libasan8 (= 13.2.0-2), libatomic1 (= 13.2.0-2), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4), libblkid1 (= 2.39.1-4), libbrotli1 (= 1.0.9-2+b6), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-7), libc-dev-bin (= 2.37-7), libc6 (= 2.37-7), libc6-dev (= 2.37-7), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-2), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4), libctf0 (= 2.41-4), libcurl4 (= 8.2.1-1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.5), libdpkg-perl (= 1.21.22), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-2), libgcc-13-dev (= 13.2.0-2), libgcc-s1 (= 13.2.0-2), libgcrypt20 (= 1.10.2-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2), libgnutls30 (= 3.8.1-4), libgomp1 (= 13.2.0-2), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-4), libgssapi-krb5-2 (= 1.20.1-3), libhogweed6 (= 3.9.1-2), libhwasan0 (= 13.2.0-2), libicu72 (= 72.1-3), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-2), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-3), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3), libkrb5support0 (= 1.20.1-3), libldap-2.5-0 (= 2.5.13+dfsg-5), liblsan0 (= 13.2.0-2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.39.1-4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.0-4), libpam-modules (= 1.5.2-7), libpam-modules-bin (= 1.5.2-7), libpam-runtime (= 1.5.2-7), libpam0g (= 1.5.2-7), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-8), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.3-1), libpsl5 (= 0.21.2-1), libquadmath0 (= 13.2.0-2), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-4), libsmartcols1 (= 2.39.1-4), libssh2-1 (= 1.11.0-2), libssl3 (= 3.0.10-1), libstdc++-13-dev (= 13.2.0-2), libstdc++6 (= 13.2.0-2), libsub-override-perl (= 0.09-4), libsystemd0 (= 254.1-2), libtasn1-6 (= 4.19.0-3), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-2), libtsan2 (= 13.2.0-2), libubsan1 (= 13.2.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 254.1-2), libunistring2 (= 1.0-2), libuuid1 (= 2.39.1-4), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.3), libzstd1 (= 1.5.5+dfsg2-1), linux-libc-dev (= 6.4.11-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), patch (= 2.7.6-7), perl (= 5.36.0-8), perl-base (= 5.36.0-8), perl-modules-5.36 (= 5.36.0-8), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.39.1-4), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-3), zlib1g-dev (= 1:1.2.13.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1692438982" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ diamond-aligner-dbgsym_2.1.8-2_arm64.deb ---------------------------------------- new Debian package, version 2.0. size 28213228 bytes: control archive=544 bytes. 404 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: diamond-aligner-dbgsym Source: diamond-aligner Version: 2.1.8-2 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 28270 Depends: diamond-aligner (= 2.1.8-2) Section: debug Priority: optional Description: debug symbols for diamond-aligner Build-Ids: 182f21a1408d481e0d1d5fd8ec69320e4ee91b1c drwxr-xr-x root/root 0 2023-08-19 09:56 ./ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/lib/debug/.build-id/18/ -rw-r--r-- root/root 28938096 2023-08-19 09:56 ./usr/lib/debug/.build-id/18/2f21a1408d481e0d1d5fd8ec69320e4ee91b1c.debug drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-08-19 09:56 ./usr/share/doc/diamond-aligner-dbgsym -> diamond-aligner diamond-aligner_2.1.8-2_arm64.deb --------------------------------- new Debian package, version 2.0. size 1610048 bytes: control archive=1244 bytes. 770 bytes, 16 lines control 1426 bytes, 18 lines md5sums Package: diamond-aligner Version: 2.1.8-2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 4911 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Recommends: med-config Section: science Priority: optional Homepage: https://github.com/bbuchfink/diamond Description: accelerated BLAST compatible local sequence aligner DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. drwxr-xr-x root/root 0 2023-08-19 09:56 ./ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/bin/ -rwxr-xr-x root/root 4829248 2023-08-19 09:56 ./usr/bin/diamond lrwxrwxrwx root/root 0 2023-08-19 09:56 ./usr/bin/diamond-aligner -> diamond drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/ -rw-r--r-- root/root 3403 2023-06-20 10:46 ./usr/share/doc/diamond-aligner/README.md -rw-r--r-- root/root 1956 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/changelog.Debian.gz -rw-r--r-- root/root 1307 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/copyright -rw-r--r-- root/root 3460 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/diamond-calls -rw-r--r-- root/root 396 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/run-unit-test drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/ -rw-r--r-- root/root 24551 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/C.faa.diamond.dmnd.gz -rw-r--r-- root/root 24290 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/C.faa.gz -rw-r--r-- root/root 751 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/C2.faa -rw-r--r-- root/root 884 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/C2.faa.diamond.dmnd -rw-r--r-- root/root 29218 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/E.faa.diamond.dmnd.gz -rw-r--r-- root/root 29389 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/E.faa.gz -rw-r--r-- root/root 14115 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/L.faa.diamond.dmnd.gz -rw-r--r-- root/root 14172 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/L.faa.gz -rw-r--r-- root/root 14242 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/M.faa.diamond.dmnd.gz -rw-r--r-- root/root 14230 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/M.faa.gz -rw-r--r-- root/root 110 2023-08-19 09:56 ./usr/share/doc/diamond-aligner/test/README.data drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/man/ drwxr-xr-x root/root 0 2023-08-19 09:56 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-08-19 09:56 ./usr/share/man/man1/diamond-aligner.1.gz -> diamond.1.gz -rw-r--r-- root/root 3600 2023-08-19 09:56 ./usr/share/man/man1/diamond.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1326 B] Get:5 copy:/<>/apt_archive ./ Packages [1405 B] Fetched 3346 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 51.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.10-1 [1415 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20230311 [153 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1 [564 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.42.0-1 [859 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1 [949 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.15.0-1 [2906 kB] Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.19-2 [91.0 kB] Get:29 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:30 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.57-1 [221 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:35 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.29-1 [16.5 kB] Get:36 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1 [131 kB] Get:42 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:43 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-2 [81.8 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:73 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:74 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.083-1 [218 kB] Get:75 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:76 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.72-1 [187 kB] Get:79 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:82 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:83 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-6 [37.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:97 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1 [12.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:104 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1 [43.0 kB] Get:105 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1 [99.5 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.38-1 [60.0 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1 [28.8 kB] Get:111 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:113 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:118 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:121 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-6 [63.1 kB] Get:122 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:123 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:124 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:125 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:126 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (80.0 MB/s) Selecting previously unselected package netbase. (Reading database ... 24316 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.10-1_amd64.deb ... Unpacking openssl (3.0.10-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package libreadline8:amd64. 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Unpacking libapt-pkg-perl (0.1.40+b2) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../013-libb-hooks-op-check-perl_0.22-2+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../014-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b1_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../020-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../021-libvariable-magic-perl_0.63-1+b1_amd64.deb ... Unpacking libvariable-magic-perl (0.63-1+b1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../022-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libberkeleydb-perl:amd64. Preparing to unpack .../023-libberkeleydb-perl_0.64-2+b1_amd64.deb ... Unpacking libberkeleydb-perl:amd64 (0.64-2+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../024-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../025-libhtml-tagset-perl_3.20-6_all.deb ... Unpacking libhtml-tagset-perl (3.20-6) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../026-liburi-perl_5.19-2_all.deb ... Unpacking liburi-perl (5.19-2) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../027-libhtml-parser-perl_3.81-1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.81-1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../028-libcgi-pm-perl_4.57-1_all.deb ... Unpacking libcgi-pm-perl (4.57-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../029-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../030-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../031-libclass-xsaccessor-perl_1.19-4+b1_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b1) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../032-libclone-perl_0.46-1_amd64.deb ... Unpacking libclone-perl:amd64 (0.46-1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../033-libconfig-tiny-perl_2.29-1_all.deb ... Unpacking libconfig-tiny-perl (2.29-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../034-libparams-util-perl_1.102-2+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../035-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../036-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../037-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../038-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../039-libcpanel-json-xs-perl_4.37-1_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.37-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../040-libdevel-stacktrace-perl_2.0400-2_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-2) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../041-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../042-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../043-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../044-libdata-dpath-perl_0.58-2_all.deb ... Unpacking libdata-dpath-perl (0.58-2) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../045-libdata-messagepack-perl_1.02-1+b1_amd64.deb ... Unpacking libdata-messagepack-perl (1.02-1+b1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../046-libnet-domain-tld-perl_1.75-3_all.deb ... Unpacking libnet-domain-tld-perl (1.75-3) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../047-libdata-validate-domain-perl_0.10-1.1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1.1) ... Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../048-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../049-libnet-netmask-perl_2.0002-2_all.deb ... Unpacking libnet-netmask-perl (2.0002-2) ... 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Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.42.0-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.29-1) ... Setting up libsereal-encoder-perl (5.004+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.38-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.65-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.27-1) ... Setting up libsyntax-keyword-try-perl (0.29-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.636-1) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.10-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up readline-common (8.2-1.3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.19-2) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.083-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.57-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... Processing triggers for man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 473832 Build-Time: 525 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 14 Job: diamond-aligner_2.1.8-2 Lintian: pass Machine Architecture: amd64 Package: diamond-aligner Package-Time: 551 Source-Version: 2.1.8-2 Space: 473832 Status: successful Version: 2.1.8-2 -------------------------------------------------------------------------------- Finished at 2023-08-20T17:20:54Z Build needed 00:09:11, 473832k disk space