sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | disulfinder 1.2.11-12 (s390x) Fri, 21 Jan 2022 14:26:40 +0000 | +==============================================================================+ Package: disulfinder Version: 1.2.11-12 Source Version: 1.2.11-12 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b30d9e47-7e39-4875-ac69-2fdf6b88a904' with '<>' I: NOTICE: Log filtering will replace 'build/disulfinder-Asp9Yc/resolver-7i9h8b' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-01-21-0807.40-F-2022-01-21-0807.40.pdiff [6276 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-01-21-0807.40-F-2022-01-21-0807.40.pdiff [13.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-01-21-0807.40-F-2022-01-21-0807.40.pdiff [6276 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-01-21-0807.40-F-2022-01-21-0807.40.pdiff [13.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8509 kB] Fetched 8821 kB in 3s (3247 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'disulfinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/disulfinder.git Please use: git clone https://salsa.debian.org/med-team/disulfinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2491 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main disulfinder 1.2.11-12 (dsc) [2201 B] Get:2 http://debian.oregonstate.edu/debian unstable/main disulfinder 1.2.11-12 (tar) [2481 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main disulfinder 1.2.11-12 (diff) [8332 B] Fetched 2491 kB in 0s (55.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/disulfinder-Asp9Yc/disulfinder-1.2.11' with '<>' I: NOTICE: Log filtering will replace 'build/disulfinder-Asp9Yc' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [423 B] Get:5 copy:/<>/apt_archive ./ Packages [513 B] Fetched 1893 B in 0s (78.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-11-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-11-cross-base gcc-11-s390x-linux-gnu gcc-11-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan6:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libboost-dev:s390x libboost-graph-dev:s390x libboost-graph1.74-dev:s390x libboost-graph1.74.0:s390x libboost-regex1.74-dev:s390x libboost-regex1.74.0:s390x libboost-serialization1.74-dev:s390x libboost-serialization1.74.0:s390x libboost-test1.74-dev:s390x libboost-test1.74.0:s390x libboost1.74-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libf2c2:s390x libf2c2-dev:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-11-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu-dev:s390x libicu67 libicu67:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2:s390x libperl5.32 libpipeline1 libsigsegv2 libssl1.1:s390x libstdc++-11-dev libstdc++-11-dev:s390x libstdc++-11-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc g++-11-multilib-s390x-linux-gnu gcc-11-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:s390x graphviz:s390x libboost1.74-doc:s390x libboost-atomic1.74-dev:s390x libboost-chrono1.74-dev:s390x libboost-container1.74-dev:s390x libboost-context1.74-dev:s390x libboost-contract1.74-dev:s390x libboost-coroutine1.74-dev:s390x libboost-date-time1.74-dev:s390x libboost-exception1.74-dev:s390x libboost-fiber1.74-dev:s390x libboost-filesystem1.74-dev:s390x libboost-graph-parallel1.74-dev:s390x libboost-iostreams1.74-dev:s390x libboost-locale1.74-dev:s390x libboost-log1.74-dev:s390x libboost-math1.74-dev:s390x libboost-mpi1.74-dev:s390x libboost-mpi-python1.74-dev:s390x libboost-numpy1.74-dev:s390x libboost-program-options1.74-dev:s390x libboost-python1.74-dev:s390x libboost-random1.74-dev:s390x libboost-stacktrace1.74-dev:s390x libboost-system1.74-dev:s390x libboost-thread1.74-dev:s390x libboost-timer1.74-dev:s390x libboost-type-erasure1.74-dev:s390x libboost-wave1.74-dev:s390x libboost1.74-tools-dev:s390x libmpfrc++-dev:s390x libntl-dev:s390x libboost-nowide1.74-dev:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x glibc-doc manpages-dev:s390x gnupg git bzr krb5-doc:s390x krb5-user:s390x icu-doc:s390x libstdc++-11-doc libstdc++-11-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:s390x libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-11-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-11-cross-base gcc-11-s390x-linux-gnu gcc-11-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan6:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libboost-dev:s390x libboost-graph-dev:s390x libboost-graph1.74-dev:s390x libboost-graph1.74.0:s390x libboost-regex1.74-dev:s390x libboost-regex1.74.0:s390x libboost-serialization1.74-dev:s390x libboost-serialization1.74.0:s390x libboost-test1.74-dev:s390x libboost-test1.74.0:s390x libboost1.74-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libf2c2:s390x libf2c2-dev:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-11-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu-dev:s390x libicu67 libicu67:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:s390x libnsl2:s390x libperl5.32 libpipeline1 libsigsegv2 libssl1.1:s390x libstdc++-11-dev libstdc++-11-dev:s390x libstdc++-11-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:s390x sensible-utils ucf 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 252 MB of archives. After this operation, 1057 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.41-2 [295 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.41-2 [129 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.41-2 [66.9 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-6 [143 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.5-1 [37.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-4 [1354 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1.1 [823 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.37.50.20220106-2 [2367 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.27-1.1 [118 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.33-3 [2276 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-14 [1979 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-14 [10.2 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.21.1 [1568 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.21.1 [2171 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-s390x-linux-gnu-base amd64 11.2.0-9cross1 [205 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-s390x-linux-gnu amd64 11.2.0-9cross1 [45.6 MB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:11.2.0-2 [17.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.33-1cross1 [1241 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 11.2.0-9cross1 [24.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 11.2.0-9cross1 [94.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 11.2.0-9cross1 [24.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 11.2.0-9cross1 [7924 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 11.2.0-9cross1 [1920 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 11.2.0-9cross1 [530 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 11.2.0-9cross1 [806 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-s390x-cross all 11.2.0-9cross1 [690 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-s390x-linux-gnu amd64 11.2.0-9cross1 [51.0 MB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:11.2.0-2 [1452 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.15.5-1cross1 [1573 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.33-1cross1 [1856 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-s390x-cross all 11.2.0-9cross1 [1912 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-s390x-linux-gnu amd64 11.2.0-9cross1 [49.8 MB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:11.2.0-2 [1176 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5+b1 [701 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg-2 [340 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.9 [6704 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.6 [193 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.6 [1054 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main s390x gcc-11-base s390x 11.2.0-14 [207 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 11.2.0-14 [24.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.33-3 [2460 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libasan6 s390x 11.2.0-14 [1927 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 11.2.0-14 [8076 B] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 11.2.0-14 [96.8 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 11.2.0-14 [25.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 11.2.0-14 [573 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 11.2.0-14 [807 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-11-dev s390x 11.2.0-14 [690 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.15.15-1 [1476 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.27-1.1 [89.8 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.27-1.1 [118 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.46.5-2 [75.5 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.18.3-7 [64.6 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.18.3-7 [112 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1m-1 [1212 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.18.3-7 [341 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.18.3-7 [154 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc3 s390x 1.3.2-2 [78.0 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libtirpc-dev s390x 1.3.2-2 [185 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.33-3 [1882 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-11-dev s390x 11.2.0-14 [1955 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libboost1.74-dev s390x 1.74.0-14 [9533 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libboost-dev s390x 1.74.0.3 [4548 B] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libicu67 s390x 67.1-7 [8348 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libboost-regex1.74.0 s390x 1.74.0-14 [477 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libboost-graph1.74.0 s390x 1.74.0-14 [319 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libicu-dev s390x 67.1-7 [9290 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libboost-regex1.74-dev s390x 1.74.0-14 [548 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libboost-serialization1.74.0 s390x 1.74.0-14 [333 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libboost-serialization1.74-dev s390x 1.74.0-14 [373 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x libboost-test1.74.0 s390x 1.74.0-14 [441 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x libboost-test1.74-dev s390x 1.74.0-14 [509 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x libboost-graph1.74-dev s390x 1.74.0-14 [1450 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main s390x libboost-graph-dev s390x 1.74.0.3 [4436 B] Get:125 http://debian.oregonstate.edu/debian unstable/main s390x libf2c2 s390x 20140711-1 [118 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main s390x libf2c2-dev s390x 20140711-1 [124 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 252 MB in 2s (128 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... 10576 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../001-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../002-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../003-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.41-2_amd64.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.41-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.41-2_amd64.deb ... Unpacking file (1:5.41-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.22.4-8_amd64.deb ... Unpacking groff-base (1.22.4-8) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.37.2-6_amd64.deb ... Unpacking bsdextrautils (2.37.2-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.5-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.5-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.9.4-4_amd64.deb ... Unpacking man-db (2.9.4-4) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.1_all.deb ... Unpacking automake (1:1.16.5-1.1) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-s390x-linux-gnu. Preparing to unpack .../021-binutils-s390x-linux-gnu_2.37.50.20220106-2_amd64.deb ... Unpacking binutils-s390x-linux-gnu (2.37.50.20220106-2) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../022-libcrypt-dev_1%3a4.4.27-1.1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.27-1.1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../023-libtirpc-dev_1.3.2-2_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../024-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../025-rpcsvc-proto_1.4.2-4_amd64.deb ... Unpacking rpcsvc-proto (1.4.2-4) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../026-libc6-dev_2.33-3_amd64.deb ... Unpacking libc6-dev:amd64 (2.33-3) ... Selecting previously unselected package libstdc++-11-dev:amd64. Preparing to unpack .../027-libstdc++-11-dev_11.2.0-14_amd64.deb ... Unpacking libstdc++-11-dev:amd64 (11.2.0-14) ... Selecting previously unselected package g++-11. Preparing to unpack .../028-g++-11_11.2.0-14_amd64.deb ... Unpacking g++-11 (11.2.0-14) ... Selecting previously unselected package g++. Preparing to unpack .../029-g++_4%3a11.2.0-2_amd64.deb ... Unpacking g++ (4:11.2.0-2) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../030-libdpkg-perl_1.21.1_all.deb ... Unpacking libdpkg-perl (1.21.1) ... 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Preparing to unpack .../036-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package gcc-11-cross-base. Preparing to unpack .../037-gcc-11-cross-base_11.2.0-9cross1_all.deb ... Unpacking gcc-11-cross-base (11.2.0-9cross1) ... Selecting previously unselected package libc6-s390x-cross. Preparing to unpack .../038-libc6-s390x-cross_2.33-1cross1_all.deb ... Unpacking libc6-s390x-cross (2.33-1cross1) ... Selecting previously unselected package libgcc-s1-s390x-cross. Preparing to unpack .../039-libgcc-s1-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libgcc-s1-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package libgomp1-s390x-cross. Preparing to unpack .../040-libgomp1-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libgomp1-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package libitm1-s390x-cross. Preparing to unpack .../041-libitm1-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libitm1-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package libatomic1-s390x-cross. Preparing to unpack .../042-libatomic1-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libatomic1-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package libasan6-s390x-cross. Preparing to unpack .../043-libasan6-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libasan6-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package libstdc++6-s390x-cross. Preparing to unpack .../044-libstdc++6-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libstdc++6-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package libubsan1-s390x-cross. Preparing to unpack .../045-libubsan1-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libubsan1-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package libgcc-11-dev-s390x-cross. Preparing to unpack .../046-libgcc-11-dev-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libgcc-11-dev-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package gcc-11-s390x-linux-gnu. Preparing to unpack .../047-gcc-11-s390x-linux-gnu_11.2.0-9cross1_amd64.deb ... Unpacking gcc-11-s390x-linux-gnu (11.2.0-9cross1) ... Selecting previously unselected package gcc-s390x-linux-gnu. Preparing to unpack .../048-gcc-s390x-linux-gnu_4%3a11.2.0-2_amd64.deb ... Unpacking gcc-s390x-linux-gnu (4:11.2.0-2) ... Selecting previously unselected package linux-libc-dev-s390x-cross. Preparing to unpack .../049-linux-libc-dev-s390x-cross_5.15.5-1cross1_all.deb ... Unpacking linux-libc-dev-s390x-cross (5.15.5-1cross1) ... Selecting previously unselected package libc6-dev-s390x-cross. Preparing to unpack .../050-libc6-dev-s390x-cross_2.33-1cross1_all.deb ... Unpacking libc6-dev-s390x-cross (2.33-1cross1) ... Selecting previously unselected package libstdc++-11-dev-s390x-cross. Preparing to unpack .../051-libstdc++-11-dev-s390x-cross_11.2.0-9cross1_all.deb ... Unpacking libstdc++-11-dev-s390x-cross (11.2.0-9cross1) ... Selecting previously unselected package g++-11-s390x-linux-gnu. Preparing to unpack .../052-g++-11-s390x-linux-gnu_11.2.0-9cross1_amd64.deb ... Unpacking g++-11-s390x-linux-gnu (11.2.0-9cross1) ... Selecting previously unselected package g++-s390x-linux-gnu. Preparing to unpack .../053-g++-s390x-linux-gnu_4%3a11.2.0-2_amd64.deb ... Unpacking g++-s390x-linux-gnu (4:11.2.0-2) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../054-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../055-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../056-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../057-libxml2_2.9.12+dfsg-5+b1_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-5+b1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../058-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../059-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../060-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../061-libxml-libxml-perl_2.0207+dfsg-2_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../062-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../063-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../064-libconfig-auto-perl_0.44-1.1_all.deb ... Unpacking libconfig-auto-perl (0.44-1.1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../065-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../066-libfile-homedir-perl_1.006-1_all.deb ... Unpacking libfile-homedir-perl (1.006-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../067-libdebian-dpkgcross-perl_2.6.18+nmu2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.18+nmu2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../068-dpkg-cross_2.6.18+nmu2_all.deb ... Unpacking dpkg-cross (2.6.18+nmu2) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../069-crossbuild-essential-s390x_12.9_all.deb ... Unpacking crossbuild-essential-s390x (12.9) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../070-libdebhelper-perl_13.6_all.deb ... Unpacking libdebhelper-perl (13.6) ... Selecting previously unselected package libtool. Preparing to unpack .../071-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../072-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../073-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../074-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../075-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../076-dh-strip-nondeterminism_1.13.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../077-libelf1_0.186-1_amd64.deb ... Unpacking libelf1:amd64 (0.186-1) ... Selecting previously unselected package dwz. Preparing to unpack .../078-dwz_0.14-1_amd64.deb ... Unpacking dwz (0.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../079-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../080-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../081-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../082-debhelper_13.6_all.deb ... Unpacking debhelper (13.6) ... Selecting previously unselected package gcc-11-base:s390x. Preparing to unpack .../083-gcc-11-base_11.2.0-14_s390x.deb ... Unpacking gcc-11-base:s390x (11.2.0-14) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../084-icu-devtools_67.1-7_amd64.deb ... Unpacking icu-devtools (67.1-7) ... Selecting previously unselected package libgcc-s1:s390x. Preparing to unpack .../085-libgcc-s1_11.2.0-14_s390x.deb ... Unpacking libgcc-s1:s390x (11.2.0-14) ... Selecting previously unselected package libc6:s390x. Preparing to unpack .../086-libc6_2.33-3_s390x.deb ... Unpacking libc6:s390x (2.33-3) ... Selecting previously unselected package libasan6:s390x. Preparing to unpack .../087-libasan6_11.2.0-14_s390x.deb ... Unpacking libasan6:s390x (11.2.0-14) ... Selecting previously unselected package libatomic1:s390x. Preparing to unpack .../088-libatomic1_11.2.0-14_s390x.deb ... Unpacking libatomic1:s390x (11.2.0-14) ... Selecting previously unselected package libgomp1:s390x. Preparing to unpack .../089-libgomp1_11.2.0-14_s390x.deb ... Unpacking libgomp1:s390x (11.2.0-14) ... Selecting previously unselected package libitm1:s390x. Preparing to unpack .../090-libitm1_11.2.0-14_s390x.deb ... Unpacking libitm1:s390x (11.2.0-14) ... Selecting previously unselected package libstdc++6:s390x. Preparing to unpack .../091-libstdc++6_11.2.0-14_s390x.deb ... Unpacking libstdc++6:s390x (11.2.0-14) ... Selecting previously unselected package libubsan1:s390x. 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Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libc6-dev-s390x-cross (2.33-1cross1) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1.1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.33-3) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libgomp1-s390x-cross (11.2.0-9cross1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-11-s390x-linux-gnu-base:amd64 (11.2.0-9cross1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-s390x-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up perl (5.32.1-6) ... Setting up libgcc-s1-s390x-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.21.1) ... Setting up autoconf (2.71-2) ... Setting up libstdc++-11-dev:amd64 (11.2.0-14) ... Setting up libitm1-s390x-cross (11.2.0-9cross1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libsub-override-perl (0.09-2) ... Setting up cpp-11-s390x-linux-gnu (11.2.0-9cross1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up cpp-s390x-linux-gnu (4:11.2.0-2) ... Setting up g++-11 (11.2.0-14) ... Setting up libstdc++6-s390x-cross (11.2.0-9cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.6) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (11.2.0-9cross1) ... Setting up dpkg-dev (1.21.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libubsan1-s390x-cross (11.2.0-9cross1) ... Setting up libgcc-11-dev-s390x-cross (11.2.0-9cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-11-s390x-linux-gnu (11.2.0-9cross1) ... Setting up gcc-s390x-linux-gnu (4:11.2.0-2) ... Setting up libxml-libxml-perl (2.0207+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libstdc++-11-dev-s390x-cross (11.2.0-9cross1) ... Setting up debhelper (13.6) ... Setting up g++-11-s390x-linux-gnu (11.2.0-9cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-s390x-linux-gnu (4:11.2.0-2) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-s390x (12.9) ... Setting up libgcc-s1:s390x (11.2.0-14) ... Setting up libc6:s390x (2.33-3) ... Setting up libf2c2:s390x (20140711-1) ... Setting up libstdc++6:s390x (11.2.0-14) ... Setting up libitm1:s390x (11.2.0-14) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up libicu67:s390x (67.1-7) ... Setting up libssl1.1:s390x (1.1.1m-1) ... Setting up libcrypt1:s390x (1:4.4.27-1.1) ... Setting up libcom-err2:s390x (1.46.5-2) ... Setting up libgomp1:s390x (11.2.0-14) ... Setting up libasan6:s390x (11.2.0-14) ... Setting up libkrb5support0:s390x (1.18.3-7) ... Setting up libboost-test1.74.0:s390x (1.74.0-14) ... Setting up libboost-regex1.74.0:s390x (1.74.0-14) ... Setting up libatomic1:s390x (11.2.0-14) ... Setting up libboost-graph1.74.0:s390x (1.74.0-14) ... Setting up libk5crypto3:s390x (1.18.3-7) ... Setting up libubsan1:s390x (11.2.0-14) ... Setting up libboost-serialization1.74.0:s390x (1.74.0-14) ... Setting up libgcc-11-dev:s390x (11.2.0-14) ... Setting up libcrypt-dev:s390x (1:4.4.27-1.1) ... Setting up libkrb5-3:s390x (1.18.3-7) ... Setting up libgssapi-krb5-2:s390x (1.18.3-7) ... Setting up libtirpc3:s390x (1.3.2-2) ... Setting up libtirpc-dev:s390x (1.3.2-2) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.33-3) ... Setting up libf2c2-dev:s390x (20140711-1) ... Setting up libicu-dev:s390x (67.1-7) ... Setting up libstdc++-11-dev:s390x (11.2.0-14) ... Setting up libboost1.74-dev:s390x (1.74.0-14) ... Setting up libboost-serialization1.74-dev:s390x (1.74.0-14) ... Setting up libboost-regex1.74-dev:s390x (1.74.0-14) ... Setting up libboost-dev:s390x (1.74.0.3) ... Setting up libboost-test1.74-dev:s390x (1.74.0-14) ... Setting up libboost-graph1.74-dev:s390x (1.74.0-14) ... Setting up libboost-graph-dev:s390x (1.74.0.3) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.33-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37.50.20220106-2 dpkg-dev_1.21.1 g++-11_11.2.0-14 gcc-11_11.2.0-14 libc6-dev_2.33-3 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-s390x-cross_11.2.0-9cross1 libstdc++6_11.2.0-14 libstdc++6-s390x-cross_11.2.0-9cross1 linux-libc-dev_5.15.15-1 Package versions: adduser_3.118 apt_2.3.14 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.50.20220106-2 binutils-common_2.37.50.20220106-2 binutils-s390x-linux-gnu_2.37.50.20220106-2 binutils-x86-64-linux-gnu_2.37.50.20220106-2 bsdextrautils_2.37.2-6 bsdutils_1:2.37.2-6 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-14 cpp-11-s390x-linux-gnu_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-s390x-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-s390x_12.9 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.27-1 fdisk_2.37.2-6 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-14 g++-11-s390x-linux-gnu_11.2.0-9cross1 g++-s390x-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-14 gcc-11_11.2.0-14 gcc-11-base_11.2.0-14 gcc-11-cross-base_11.2.0-9cross1 gcc-11-s390x-linux-gnu_11.2.0-9cross1 gcc-11-s390x-linux-gnu-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-4+b1 gcc-s390x-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.14 libarchive-zip-perl_1.68-1 libasan5_9.4.0-4+b1 libasan6_11.2.0-14 libasan6-s390x-cross_11.2.0-9cross1 libatomic1_11.2.0-14 libatomic1-s390x-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1+b1 libbinutils_2.37.50.20220106-2 libblkid1_2.37.2-6 libboost-dev_1.74.0.3 libboost-graph-dev_1.74.0.3 libboost-graph1.74-dev_1.74.0-14 libboost-graph1.74.0_1.74.0-14 libboost-regex1.74-dev_1.74.0-14 libboost-regex1.74.0_1.74.0-14 libboost-serialization1.74-dev_1.74.0-14 libboost-serialization1.74.0_1.74.0-14 libboost-test1.74-dev_1.74.0-14 libboost-test1.74.0_1.74.0-14 libboost1.74-dev_1.74.0-14 libbz2-1.0_1.0.8-5 libc-bin_2.33-3 libc-dev-bin_2.33-3 libc6_2.33-3 libc6-dev_2.33-3 libc6-dev-s390x-cross_2.33-1cross1 libc6-s390x-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-14 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.37.50.20220106-2 libctf0_2.37.50.20220106-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.1 libelf1_0.186-1 libext2fs2_1.46.5-2 libf2c2_20140711-1 libf2c2-dev_20140711-1 libfakeroot_1.27-1 libfdisk1_2.37.2-6 libffi6_3.2.1-9 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-14 libgcc-11-dev-s390x-cross_11.2.0-9cross1 libgcc-s1_11.2.0-14 libgcc-s1-s390x-cross_11.2.0-9cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-3 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logsave_1.46.5-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-6 ncurses-base_6.3-2 ncurses-bin_6.3-2 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-6 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: disulfinder Binary: disulfinder, disulfinder-data Architecture: any all Version: 1.2.11-12 Maintainer: Debian Med Packaging Team Uploaders: Guy Yachdav , Laszlo Kajan , Andreas Tille Homepage: https://disulfind.dsi.unifi.it/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/disulfinder Vcs-Git: https://salsa.debian.org/med-team/disulfinder.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper Package-List: disulfinder deb science optional arch=any disulfinder-data deb science optional arch=all Checksums-Sha1: 275abbe8b4ac8e7f83d8a38c81c7f75c0ec7481e 2480613 disulfinder_1.2.11.orig.tar.gz 52738db0241d3d67646b28e2f265eadbcad5a33e 8332 disulfinder_1.2.11-12.debian.tar.xz Checksums-Sha256: d653aaac3ea26e9f6106a371de4f43d05b781a8b8b690c97820e4b27ea9d3495 2480613 disulfinder_1.2.11.orig.tar.gz 407927fbe004d1c16487e4f787cd23d79ce80cdef4e4d17315b967109d5d33ca 8332 disulfinder_1.2.11-12.debian.tar.xz Files: a4f0ed137b56fc0674a207351b659eba 2480613 disulfinder_1.2.11.orig.tar.gz 53a5bfd7ad95f806bdee5a7888491ba0 8332 disulfinder_1.2.11-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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10:41:26 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./disulfinder_1.2.11-12.dsc dpkg-source: info: extracting disulfinder in /<> dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying variable_length_array dpkg-source: info: applying unknown_escape dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b30d9e47-7e39-4875-ac69-2fdf6b88a904 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package disulfinder dpkg-buildpackage: info: source version 1.2.11-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home make -j1 distclean make[1]: Entering directory '/<>' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[2]: Entering directory '/<>/disulfind/src' make -C NN clean make[3]: Entering directory '/<>/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make[3]: Leaving directory '/<>/disulfind/src/NN' make -C Common clean make[3]: Entering directory '/<>/disulfind/src/Common' make -C eig clean make[4]: Entering directory '/<>/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[4]: Leaving directory '/<>/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[3]: Leaving directory '/<>/disulfind/src/Common' make -C SVM clean make[3]: Entering directory '/<>/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/<>/disulfind/src/SVM' cd SVM && make clean make[3]: Entering directory '/<>/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/<>/disulfind/src/SVM' cd Input && make clean make[3]: Entering directory '/<>/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[3]: Leaving directory '/<>/disulfind/src/Input' cd Output && make clean make[3]: Entering directory '/<>/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[3]: Leaving directory '/<>/disulfind/src/Output' cd FSA-Alignment && make clean make[3]: Entering directory '/<>/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[3]: Leaving directory '/<>/disulfind/src/FSA-Alignment' cd BRNN && make clean make[3]: Entering directory '/<>/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[3]: Leaving directory '/<>/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[2]: Leaving directory '/<>/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/disulfinder.substvars debian/disulfinder-data.substvars debian/files rm -fr -- debian/disulfinder/ debian/tmp/ debian/disulfinder-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a install -d /<>/debian/.debhelper/generated/_source/home debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[2]: Entering directory '/<>' make -C disulfind/src disulfinder make[3]: Entering directory '/<>/disulfind/src' s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o In file included from Input/utils.h:2, from Input/GlobalDescriptor.cpp:3: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o In file included from Input/utils.h:2, from Input/createBRNNDataset.h:1, from Input/createBRNNDataset.cpp:2: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o In file included from Input/utils.h:2, from Input/createKernelDataset.h:1, from Input/createKernelDataset.cpp:2: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c SVM/SVMClassifier.cpp -o SVM/SVMClassifier.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeHTMLOutput.cpp -o Output/makeHTMLOutput.o Output/makeHTMLOutput.cpp: In function ‘void makeHTMLOutput(std::string, const char*, int, std::string, std::ostream&)’: Output/makeHTMLOutput.cpp:162:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~~ Output/makeHTMLOutput.cpp:162:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/utils.cpp -o Output/utils.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeASCIIOutput.cpp -o Output/makeASCIIOutput.o Output/makeASCIIOutput.cpp: In function ‘void makeASCIIOutput(std::string, const char*, int, std::string, std::ostream&)’: Output/makeASCIIOutput.cpp:144:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~~ Output/makeASCIIOutput.cpp:144:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/fsa.cpp -o FSA-Alignment/fsa.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/viterbi_aligner.cpp -o FSA-Alignment/viterbi_aligner.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/multi-array.cpp -o NN/multi-array.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/array.cpp -o NN/array.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-model.cpp -o NN/brnn-model.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-test.cpp -o NN/brnn-test.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Node.cpp -o BRNN/RNNs/Node.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/StructureSearch.cpp -o BRNN/RNNs/StructureSearch.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DataSet.cpp -o BRNN/RNNs/DataSet.o In file included from BRNN/RNNs/DataSet.cpp:1: BRNN/RNNs/DataSet.h:19:1: warning: ‘typedef’ was ignored in this declaration 19 | typedef struct StructuredInstanceTemplate { | ^~~~~~~ In file included from BRNN/RNNs/DataSet.cpp:1: BRNN/RNNs/DataSet.h: In constructor ‘DataSet::iterator::iterator(DataSet&)’: BRNN/RNNs/DataSet.h:86:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 86 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h: In member function ‘bool DataSet::iterator::operator++()’: BRNN/RNNs/DataSet.h:116:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 116 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h:135:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.cpp: In constructor ‘DataSet::DataSet(const char*, const char*)’: BRNN/RNNs/DataSet.cpp:69:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 69 | if(pos == string::npos) | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.cpp: In member function ‘bool DataSet::loadInstances(const char*)’: BRNN/RNNs/DataSet.cpp:141:7: warning: unused variable ‘ng’ [-Wunused-variable] 141 | int ng = 1; | ^~ BRNN/RNNs/DataSet.cpp: At global scope: BRNN/RNNs/DataSet.cpp:14:12: warning: ‘int one(const dirent*)’ defined but not used [-Wunused-function] 14 | static int one(const struct dirent* unused) { | ^~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DPAG.cpp -o BRNN/RNNs/DPAG.o BRNN/RNNs/DPAG.cpp: In function ‘float PRMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:48:7: warning: unused variable ‘global_predicted_positives’ [-Wunused-variable] 48 | int global_predicted_positives = boost::num_edges(g), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:49:5: warning: unused variable ‘global_actual_positives’ [-Wunused-variable] 49 | global_actual_positives = boost::num_edges(gtarget), | ^~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:52:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 52 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘float PrecisionMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:302:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 302 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘std::pair globalPRMeasure(const DPAG&, const DPAG&, int&, int&, int&, int&, int&, int&, float&)’: BRNN/RNNs/DPAG.cpp:361:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 361 | Vertex_d graphNode, targetNode, targetNode1; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘ConfusionTable getPredictionIndexes(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:560:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::vertices_size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | require(true_positives + true_negatives + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | false_positives + false_negatives == | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 561 | boost::num_vertices(gpred) * (boost::num_vertices(gpred)-1) / 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:471:9: warning: unused variable ‘weight’ [-Wunused-variable] 471 | float weight = 1.0 / boost::num_vertices(gpred); | ^~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘float RecallMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:573:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 573 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘bool equal(const DPAG&, const DPAG&)’: BRNN/RNNs/DPAG.cpp:746:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 746 | for(int i=0; i, boost::property >, boost::adjacency_list, boost::property > > dpag_to_rnndpag(const DPAG&)’: BRNN/RNNs/DPAG.cpp:832:24: warning: comparison of integer expressions of different signedness: ‘boost::vec_adj_list_vertex_id_map, long unsigned int>::value_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 832 | if(vertex_id[*v_i] != n_vertices-1) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:839:29: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘boost::vec_adj_list_vertex_id_map, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 839 | if(children.front() == vertex_id[*v_i]+1) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:844:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 844 | for(int i=0; i, int>::value_type’ {aka ‘int’} and ‘boost::vec_adj_list_vertex_id_map, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 862 | if((*it).second.front() == vertex_id[*v_i]-1) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:867:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 867 | for(int i=0; i<(*it).second.size(); i++) | ~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:813:12: warning: unused variable ‘node’ [-Wunused-variable] 813 | Vertex_d node; | ^~~~ BRNN/RNNs/DPAG.cpp: In function ‘DPAG rnndpag_to_dpag(const std::pair, boost::property >, boost::adjacency_list, boost::property > >&)’: BRNN/RNNs/DPAG.cpp:878:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 878 | VertexId vertex_id = boost::get(boost::vertex_index, g);; | ^~~~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Options.cpp -o BRNN/RNNs/Options.o BRNN/RNNs/Options.cpp: In member function ‘virtual void Options::parse_config(const string&)’: BRNN/RNNs/Options.cpp:30:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 30 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:36:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 36 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:42:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 42 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:47:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 47 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:61:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 61 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:79:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 79 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:85:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 85 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:90:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 90 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:99:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | if(_input_mask.size() != _input_dimension) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp: In member function ‘virtual void Options::parse_args(int, char**)’: BRNN/RNNs/Options.cpp:138:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 138 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:144:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 144 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:150:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 150 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:155:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 155 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:169:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 169 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:187:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 187 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:193:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 193 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:198:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 198 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:207:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(_input_mask.size() != _input_dimension) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/protein_util.cpp -o BRNN/protein_util.o In file included from BRNN/protein_util.cpp:1: BRNN/protein_util.h: In constructor ‘Residue::Residue(int, int, char, float, float, float, float, float, char)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h: In copy constructor ‘Residue::Residue(const Residue&)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:211:13: warning: ‘Residue::_bp2’ will be initialized after [-Wreorder] 211 | int _bp1, _bp2; // bridge partners | ^~~~ BRNN/protein_util.h:206:24: warning: ‘int Residue::_ssp’ [-Wreorder] 206 | int _index, _sindex, _ssp; // DSSP index, sequential index and disulfide bond partner | ^~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h: In constructor ‘SSegment::SSegment(char)’: BRNN/protein_util.h:241:16: warning: ‘SSegment::_baricentre’ will be initialized after [-Wreorder] 241 | Coordinate3D _baricentre; // baricentrum of C_alpha atoms set | ^~~~~~~~~~~ BRNN/protein_util.h:239:18: warning: ‘SSegment::Hydrophobicity SSegment::_hydr’ [-Wreorder] 239 | Hydrophobicity _hydr; // hydropatic tendency (?!) of the segment | ^~~~~ BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] 245 | SSegment(char symbol): | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/11/cassert:44, from BRNN/protein_util.cpp:2: BRNN/protein_util.cpp: In member function ‘void Chain::setSShydrophobicity()’: BRNN/protein_util.cpp:365:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 365 | assert(resHydrScales.size() == numResidues()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ BRNN/protein_util.cpp:380:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 380 | if(r_i >= resHydrScales.size()) r_i = resHydrScales.size()-1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/11/cassert:44, from BRNN/protein_util.cpp:2: BRNN/protein_util.cpp:386:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 386 | assert(hAvg.size() == (*c_it).numResidues()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BRNN/protein_util.cpp:391:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 391 | for(int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 401 | assert(seq_pos == resHydrScales.size()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/blast_util.cpp -o BRNN/blast_util.o BRNN/blast_util.cpp: In member function ‘void PSSM::parsePsiBlastReport(const char*)’: BRNN/blast_util.cpp:34:13: warning: unused variable ‘prof’ [-Wunused-variable] 34 | Profile prof; | ^~~~ s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/rnn_util.cpp -o BRNN/rnn_util.o In file included from BRNN/rnn_util.cpp:4: BRNN/RNNs/DataSet.h:19:1: warning: ‘typedef’ was ignored in this declaration 19 | typedef struct StructuredInstanceTemplate { | ^~~~~~~ In file included from BRNN/rnn_util.cpp:4: BRNN/RNNs/DataSet.h: In constructor ‘DataSet::iterator::iterator(DataSet&)’: BRNN/RNNs/DataSet.h:86:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 86 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h: In member function ‘bool DataSet::iterator::operator++()’: BRNN/RNNs/DataSet.h:116:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 116 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h:135:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from BRNN/rnn_util.cpp:7: BRNN/protein_util.h: In constructor ‘Residue::Residue(int, int, char, float, float, float, float, float, char)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h: In copy constructor ‘Residue::Residue(const Residue&)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:211:13: warning: ‘Residue::_bp2’ will be initialized after [-Wreorder] 211 | int _bp1, _bp2; // bridge partners | ^~~~ BRNN/protein_util.h:206:24: warning: ‘int Residue::_ssp’ [-Wreorder] 206 | int _index, _sindex, _ssp; // DSSP index, sequential index and disulfide bond partner | ^~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h: In constructor ‘SSegment::SSegment(char)’: BRNN/protein_util.h:241:16: warning: ‘SSegment::_baricentre’ will be initialized after [-Wreorder] 241 | Coordinate3D _baricentre; // baricentrum of C_alpha atoms set | ^~~~~~~~~~~ BRNN/protein_util.h:239:18: warning: ‘SSegment::Hydrophobicity SSegment::_hydr’ [-Wreorder] 239 | Hydrophobicity _hydr; // hydropatic tendency (?!) of the segment | ^~~~~ BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] 245 | SSegment(char symbol): | ^~~~~~~~ BRNN/rnn_util.cpp: In function ‘void create_connectivity_input_data(const string&, const string&, int, int, const string&)’: BRNN/rnn_util.cpp:233:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 233 | for(int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 277 | if(i >=0 && i < pssm.size()) | ~~^~~~~~~~~~~~~ BRNN/rnn_util.cpp: In function ‘void rnn_predict_disulphides(const string&, const string&, const string&, const string&, const string&, const string&, int)’: BRNN/rnn_util.cpp:359:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::edges_size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 359 | require(B == boost::num_edges(candidate) && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:348:16: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 348 | VertexId vertex_id = boost::get(boost::vertex_index, candidate); | ^~~~~~~~~ BRNN/rnn_util.cpp:405:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, boost::property > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 405 | for(int j=0; j, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::edges_size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 406 | require(B == boost::num_edges(bestPatterns[j]) && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:407:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::vertices_size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 407 | B == boost::num_vertices(bestPatterns[j]) / 2, | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:378:18: warning: unused variable ‘nodes’ [-Wunused-variable] 378 | vector *nodes = it.currenTONodes(); | ^~~~~ In file included from BRNN/rnn_util.cpp:5: BRNN/RNNs/RecursiveNN.h: In instantiation of ‘RecursiveNN::RecursiveNN(const char*) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’: BRNN/rnn_util.cpp:88:73: required from here BRNN/RNNs/RecursiveNN.h:1018:13: warning: unused variable ‘trasd’ [-Wunused-variable] 1018 | TrasdType trasd = Options::instance()->getTrasductionType(); | ^~~~~ In file included from BRNN/rnn_util.cpp:5: BRNN/RNNs/RecursiveNN.h:1026:23: warning: variable ‘indexes’ set but not used [-Wunused-but-set-variable] 1026 | std::pair indexes = Options::instance()->getLayersIndexes(); | ^~~~~~~ BRNN/RNNs/RecursiveNN.h:1047:7: warning: unused variable ‘default_precision’ [-Wunused-variable] 1047 | int default_precision = is.precision(); | ^~~~~~~~~~~~~~~~~ In file included from BRNN/rnn_util.cpp:6: BRNN/RNNs/StructureSearch.h: In instantiation of ‘std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN]’: BRNN/rnn_util.cpp:396:37: required from here BRNN/RNNs/StructureSearch.h:977:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 977 | for(int i=0; i<_nodesInputs.size(); ++i) | ~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/StructureSearch.h:984:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, boost::property > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 984 | for(int i=0; i::fPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/RecursiveNN.h:1356:3: required from ‘void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’ BRNN/rnn_util.cpp:99:32: required from here BRNN/RNNs/RecursiveNN.h:1390:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1390 | require(_n == toNodes[t]->_encodedInput.size(), "Error in input dim!"); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1415:45: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1415 | out_i!=out_end && edge_id[*out_i] < _v; ++out_i) { BRNN/RNNs/RecursiveNN.h:1418:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1418 | for(int i=_n + edge_id[*out_i]*_m; i<_n + _m*(edge_id[*out_i] + 1); i++) { | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1384:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 1384 | VertexId vertex_id = boost::get(boost::vertex_index, sdag); | ^~~~~~~~~ BRNN/RNNs/RecursiveNN.h: In instantiation of ‘void RecursiveNN::bPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/RecursiveNN.h:1359:19: required from ‘void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’ BRNN/rnn_util.cpp:99:32: required from here BRNN/RNNs/RecursiveNN.h:1470:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1470 | for(int t=0; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1471 | require(_n == toNodes[t]->_encodedInput.size(), "Error!"); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1492:45: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1492 | out_i!=out_end && edge_id[*out_i] < _v; ++out_i) { BRNN/RNNs/RecursiveNN.h:1495:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1495 | for(int i=_n + edge_id[*out_i]*_m; i<_n + _m*(edge_id[*out_i] + 1); i++) { | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1465:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 1465 | VertexId vertex_id = boost::get(boost::vertex_index, sdag); | ^~~~~~~~~ In file included from BRNN/rnn_util.cpp:6: BRNN/RNNs/StructureSearch.h: In instantiation of ‘float StructureSearch::RNNMeasure(const DPAG&, RNN*, std::vector&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/StructureSearch.h:990:17: required from ‘std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN]’ BRNN/rnn_util.cpp:396:37: required from here BRNN/RNNs/StructureSearch.h:186:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for(int i=0; i>/disulfind/src/Common' s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Vector.cpp -o Vector.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Util.cpp -o Util.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c CommonMethods.cpp -o CommonMethods.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c ConfusionMatrix.cpp -o ConfusionMatrix.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Exception.cpp -o Exception.o s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Statistics.cpp -o Statistics.o s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/balanc.o eig/balanc.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/balbak.o eig/balbak.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/cdiv.o eig/cdiv.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/elmhes.o eig/elmhes.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/eltran.o eig/eltran.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/hqr.o eig/hqr.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/hqr2.o eig/hqr2.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/rg.o eig/rg.c s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c coords.cpp -o coords.o s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/d_sign.o eig/d_sign.c ar rvs libCommon.a Vector.o Util.o CommonMethods.o ConfusionMatrix.o Exception.o Statistics.o eig/balanc.o eig/balbak.o eig/cdiv.o eig/elmhes.o eig/eltran.o eig/hqr.o eig/hqr2.o eig/rg.o coords.o eig/d_sign.o ar: creating libCommon.a a - Vector.o a - Util.o a - CommonMethods.o a - ConfusionMatrix.o a - Exception.o a - Statistics.o a - eig/balanc.o a - eig/balbak.o a - eig/cdiv.o a - eig/elmhes.o a - eig/eltran.o a - eig/hqr.o a - eig/hqr2.o a - eig/rg.o a - coords.o a - eig/d_sign.o make[4]: Leaving directory '/<>/disulfind/src/Common' s390x-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c disulfinder.cpp -o disulfinder.o In file included from Input/utils.h:2, from disulfinder.cpp:8: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ s390x-linux-gnu-g++ -o disulfinder disulfinder.o Input/GlobalDescriptor.o Input/createBRNNDataset.o Input/createKernelDataset.o Input/makeWindow.o Input/makeSparseVector.o Input/Protein.o Input/buildXfolds.o SVM/SVMClassifier.o Output/makeHTMLOutput.o Output/utils.o Output/makeASCIIOutput.o FSA-Alignment/fsa.o FSA-Alignment/viterbi_aligner.o NN/multi-array.o NN/array.o NN/brnn-model.o NN/brnn-test.o BRNN/RNNs/Node.o BRNN/RNNs/StructureSearch.o BRNN/RNNs/DataSet.o BRNN/RNNs/DPAG.o BRNN/RNNs/Options.o BRNN/protein_util.o BRNN/blast_util.o BRNN/rnn_util.o -Wl,-z,relro -Wl,-z,now -LCommon/ -lCommon make[3]: Leaving directory '/<>/disulfind/src' sed -e 's|__datadir__||g;s|__docdir__|/usr/share/doc/disulfinder|g;s|__pkgdatadir__||g;s|__PREFIX__|/usr|g;s|__sysconfdir__||g;s|__VERSION__|1.2.11|g;' "disulfinder.pod" | \ pod2man -c 'User Commands' -r '1.2.11' -name DISULFINDER > "disulfinder.1" make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/disulfinder.substvars rm -fr -- debian/.debhelper/generated/disulfinder/ debian/disulfinder/ debian/tmp/ rm -f debian/disulfinder.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' /usr/bin/make DESTDIR=/<>/debian/disulfinder prefix=/usr install make[2]: Entering directory '/<>' /usr/bin/make -C disulfind/src install make[3]: Entering directory '/<>/disulfind/src' mkdir -p /<>/debian/disulfinder/usr/bin cp disulfinder /<>/debian/disulfinder/usr/bin/ mkdir -p /<>/debian/disulfinder/usr/share/disulfinder mkdir -p /<>/debian/disulfinder/usr/share/disulfinder/Models cp -r ../Models /<>/debian/disulfinder/usr/share/disulfinder/ && find /<>/debian/disulfinder/usr/share/disulfinder/ -depth -ignore_readdir_race -name .svn -execdir rm -rf {} \; rm -rf /<>/debian/disulfinder/usr/share/disulfinder/Models/conn/data/sequences_w5 rm -rf /<>/debian/disulfinder/usr/share/disulfinder/Predictions rm -rf /<>/debian/disulfinder/usr/share/disulfinder/tmp make[3]: Leaving directory '/<>/disulfind/src' mkdir -p /<>/debian/disulfinder/usr/share/man/man1 && cp disulfinder.1 /<>/debian/disulfinder/usr/share/man/man1/ mkdir -p /<>/debian/disulfinder/usr/share/doc/disulfinder/examples && cp examples/res_id_* /<>/debian/disulfinder/usr/share/doc/disulfinder/examples/ make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -d debian/.debhelper/generated/disulfinder install -d debian/.debhelper/generated/disulfinder-data mkdir -p /<>/debian/disulfinder-data/usr/share/disulfinder mv /<>/debian/disulfinder/usr/share/disulfinder/* /<>/debian/disulfinder-data/usr/share/disulfinder make[1]: Leaving directory '/<>' dh_installdocs -a cp --reflink=auto -a ./debian/upstream/metadata debian/disulfinder/usr/share/doc/disulfinder cp --reflink=auto -a ./debian/README.test debian/disulfinder/usr/share/doc/disulfinder cp --reflink=auto -a ./debian/tests/installation-test debian/disulfinder/usr/share/doc/disulfinder chmod -R u\+rw,go=rX debian/disulfinder/usr/share/doc install -p -m0644 debian/copyright debian/disulfinder/usr/share/doc/disulfinder/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/disulfinder/usr/share/doc/disulfinder/changelog.Debian install -p -m0644 ./ChangeLog debian/disulfinder/usr/share/doc/disulfinder/changelog dh_installman -a man-recode --to-code UTF-8 --suffix .dh-new debian/disulfinder/usr/share/man/man1/disulfinder.1 mv debian/disulfinder/usr/share/man/man1/disulfinder.1.dh-new debian/disulfinder/usr/share/man/man1/disulfinder.1 chmod 0644 -- debian/disulfinder/usr/share/man/man1/disulfinder.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/disulfinder chmod a-x usr/share/doc/disulfinder/changelog usr/share/doc/disulfinder/changelog.Debian usr/share/man/man1/disulfinder.1 gzip -9nf usr/share/doc/disulfinder/changelog usr/share/doc/disulfinder/changelog.Debian usr/share/man/man1/disulfinder.1 cd '/<>' dh_fixperms -a find debian/disulfinder ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/disulfinder/usr/share/doc -type f -a -true -a ! -regex 'debian/disulfinder/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/disulfinder/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/disulfinder/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/disulfinder -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/disulfinder/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a dwz -- debian/disulfinder/usr/bin/disulfinder dh_strip -a install -d debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/d2 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/disulfinder/usr/bin/disulfinder debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/d2/c826c7eb4d1df561065ce48d887ba47fa633ce.debug chmod 0644 -- debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/d2/c826c7eb4d1df561065ce48d887ba47fa633ce.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/disulfinder/usr/bin/disulfinder s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/d2/c826c7eb4d1df561065ce48d887ba47fa633ce.debug debian/disulfinder/usr/bin/disulfinder install -d debian/.debhelper/disulfinder/dbgsym-root/usr/share/doc ln -s disulfinder debian/.debhelper/disulfinder/dbgsym-root/usr/share/doc/disulfinder-dbgsym dh_makeshlibs -a rm -f debian/disulfinder/DEBIAN/shlibs dh_shlibdeps -a install -d debian/disulfinder/DEBIAN dpkg-shlibdeps -Tdebian/disulfinder.substvars debian/disulfinder/usr/bin/disulfinder dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/disulfinder.substvars echo misc:Pre-Depends= >> debian/disulfinder.substvars install -d debian/.debhelper/disulfinder/dbgsym-root/DEBIAN dpkg-gencontrol -pdisulfinder -ldebian/changelog -Tdebian/disulfinder.substvars -Pdebian/.debhelper/disulfinder/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=disulfinder-dbgsym "-DDepends=disulfinder (= \${binary:Version})" "-DDescription=debug symbols for disulfinder" -DBuild-Ids=d2c826c7eb4d1df561065ce48d887ba47fa633ce -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/disulfinder/dbgsym-root/DEBIAN/control dpkg-gencontrol -pdisulfinder -ldebian/changelog -Tdebian/disulfinder.substvars -Pdebian/disulfinder chmod 0644 -- debian/disulfinder/DEBIAN/control dh_md5sums -a cd debian/disulfinder >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/disulfinder/DEBIAN/md5sums cd debian/.debhelper/disulfinder/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/disulfinder/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/disulfinder .. dpkg-deb: building package 'disulfinder' in '../disulfinder_1.2.11-12_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/disulfinder/dbgsym-root .. dpkg-deb: building package 'disulfinder-dbgsym' in '../disulfinder-dbgsym_1.2.11-12_s390x.deb'. dpkg-genbuildinfo --build=any -O../disulfinder_1.2.11-12_s390x.buildinfo dpkg-genchanges --build=any -O../disulfinder_1.2.11-12_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-21T14:29:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ disulfinder_1.2.11-12_s390x.changes: ------------------------------------ Format: 1.8 Date: Thu, 20 Jan 2022 11:36:56 +0100 Source: disulfinder Binary: disulfinder disulfinder-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.2.11-12 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: disulfinder - cysteines disulfide bonding state and connectivity predictor Changes: disulfinder (1.2.11-12) unstable; urgency=medium . * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. * Apply multi-arch hints. + disulfinder-data: Add Multi-Arch: foreign. Checksums-Sha1: 1334c29e817fcc7ec49c4c095379df3bbc0a9337 3600880 disulfinder-dbgsym_1.2.11-12_s390x.deb ae03f9140cbc656f12372825598e404b98919add 5474 disulfinder_1.2.11-12_s390x.buildinfo 7e01bcc2e2431a5a85deb43d5610628df219ae4c 208836 disulfinder_1.2.11-12_s390x.deb Checksums-Sha256: 497d7d196a138229e335426202248c96ba78c5de7f860c4891568b15a5badc61 3600880 disulfinder-dbgsym_1.2.11-12_s390x.deb cd9e358f5fd7b4b188e7bbb36e454753918cd15763fba5e41211f1f2ed61eeab 5474 disulfinder_1.2.11-12_s390x.buildinfo 4df225bcac46a1dd6598d6cb6b72049224737e94194dae33b2bfd54f6f736f64 208836 disulfinder_1.2.11-12_s390x.deb Files: d5761689a001cc44f037b9275684991d 3600880 debug optional disulfinder-dbgsym_1.2.11-12_s390x.deb 7743007507e94b7942f3d1cdfb9f958f 5474 science optional disulfinder_1.2.11-12_s390x.buildinfo d7a4240959754719c95191f3f1847158 208836 science optional disulfinder_1.2.11-12_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: disulfinder Binary: disulfinder disulfinder-dbgsym Architecture: s390x Version: 1.2.11-12 Checksums-Md5: d5761689a001cc44f037b9275684991d 3600880 disulfinder-dbgsym_1.2.11-12_s390x.deb d7a4240959754719c95191f3f1847158 208836 disulfinder_1.2.11-12_s390x.deb Checksums-Sha1: 1334c29e817fcc7ec49c4c095379df3bbc0a9337 3600880 disulfinder-dbgsym_1.2.11-12_s390x.deb 7e01bcc2e2431a5a85deb43d5610628df219ae4c 208836 disulfinder_1.2.11-12_s390x.deb Checksums-Sha256: 497d7d196a138229e335426202248c96ba78c5de7f860c4891568b15a5badc61 3600880 disulfinder-dbgsym_1.2.11-12_s390x.deb 4df225bcac46a1dd6598d6cb6b72049224737e94194dae33b2bfd54f6f736f64 208836 disulfinder_1.2.11-12_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 21 Jan 2022 14:29:01 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6), binutils (= 2.37.50.20220106-2), binutils-common (= 2.37.50.20220106-2), binutils-x86-64-linux-gnu (= 2.37.50.20220106-2), bsdextrautils (= 2.37.2-6), bsdutils (= 1:2.37.2-6), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-14), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-14), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-14), gcc-11-base (= 11.2.0-14), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), icu-devtools (= 67.1-7), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-14), libatomic1 (= 11.2.0-14), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libbinutils (= 2.37.50.20220106-2), libblkid1 (= 2.37.2-6), libboost-dev (= 1.74.0.3), libboost-graph-dev (= 1.74.0.3), libboost-graph1.74-dev (= 1.74.0-14), libboost-graph1.74.0 (= 1.74.0-14), libboost-regex1.74-dev (= 1.74.0-14), libboost-regex1.74.0 (= 1.74.0-14), libboost-serialization1.74-dev (= 1.74.0-14), libboost-serialization1.74.0 (= 1.74.0-14), libboost-test1.74-dev (= 1.74.0-14), libboost-test1.74.0 (= 1.74.0-14), libboost1.74-dev (= 1.74.0-14), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-3), libc-dev-bin (= 2.33-3), libc6 (= 2.33-3), libc6-dev (= 2.33-3), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-14), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.27-1.1), libcrypt1 (= 1:4.4.27-1.1), libctf-nobfd0 (= 2.37.50.20220106-2), libctf0 (= 2.37.50.20220106-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libf2c2 (= 20140711-1), libf2c2-dev (= 20140711-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-14), libgcc-s1 (= 11.2.0-14), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-3), libgomp1 (= 11.2.0-14), libgpg-error0 (= 1.43-3), libgssapi-krb5-2 (= 1.18.3-7), libicu-dev (= 67.1-7), libicu67 (= 67.1-7), libisl23 (= 0.24-2), libitm1 (= 11.2.0-14), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-14), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-6), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.5-1), libquadmath0 (= 11.2.0-14), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-6), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-14), libstdc++6 (= 11.2.0-14), libsub-override-perl (= 0.09-2), libsystemd0 (= 250.3-1), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-14), libubsan1 (= 11.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 250.3-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-6), libxml2 (= 2.9.12+dfsg-5+b1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.15-1), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-6), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1642675016" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ disulfinder-dbgsym_1.2.11-12_s390x.deb -------------------------------------- new Debian package, version 2.0. size 3600880 bytes: control archive=536 bytes. 391 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: disulfinder-dbgsym Source: disulfinder Version: 1.2.11-12 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 3591 Depends: disulfinder (= 1.2.11-12) Section: debug Priority: optional Description: debug symbols for disulfinder Build-Ids: d2c826c7eb4d1df561065ce48d887ba47fa633ce drwxr-xr-x root/root 0 2022-01-20 10:36 ./ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/lib/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/lib/debug/.build-id/d2/ -rw-r--r-- root/root 3666624 2022-01-20 10:36 ./usr/lib/debug/.build-id/d2/c826c7eb4d1df561065ce48d887ba47fa633ce.debug drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-01-20 10:36 ./usr/share/doc/disulfinder-dbgsym -> disulfinder disulfinder_1.2.11-12_s390x.deb ------------------------------- new Debian package, version 2.0. size 208836 bytes: control archive=1276 bytes. 1296 bytes, 24 lines control 761 bytes, 10 lines md5sums Package: disulfinder Version: 1.2.11-12 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 676 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), disulfinder-data Section: science Priority: optional Homepage: https://disulfind.dsi.unifi.it/ Description: cysteines disulfide bonding state and connectivity predictor 'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks. . 'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern. drwxr-xr-x root/root 0 2022-01-20 10:36 ./ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/bin/ -rwxr-xr-x root/root 633192 2022-01-20 10:36 ./usr/bin/disulfinder drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/disulfinder/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/doc/disulfinder/ -rw-r--r-- root/root 971 2022-01-20 10:36 ./usr/share/doc/disulfinder/README.test -rw-r--r-- root/root 1935 2022-01-20 10:36 ./usr/share/doc/disulfinder/changelog.Debian.gz -rw-r--r-- root/root 308 2011-08-26 10:41 ./usr/share/doc/disulfinder/changelog.gz -rw-r--r-- root/root 2184 2022-01-20 10:36 ./usr/share/doc/disulfinder/copyright drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/doc/disulfinder/examples/ -rw-r--r-- root/root 28389 2022-01-20 10:36 ./usr/share/doc/disulfinder/examples/res_id_41483.blastPsiMatTmb -rw-r--r-- root/root 3609 2022-01-20 10:36 ./usr/share/doc/disulfinder/examples/res_id_41483.expected_result -rw-r--r-- root/root 749 2022-01-20 10:36 ./usr/share/doc/disulfinder/installation-test -rw-r--r-- root/root 1528 2022-01-20 10:36 ./usr/share/doc/disulfinder/metadata drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/man/ drwxr-xr-x root/root 0 2022-01-20 10:36 ./usr/share/man/man1/ -rw-r--r-- root/root 3631 2022-01-20 10:36 ./usr/share/man/man1/disulfinder.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [552 B] Get:5 copy:/<>/apt_archive ./ Packages [640 B] Fetched 2155 B in 0s (93.1 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 7573 kB of archives. After this operation, 22.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-3 [548 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.37.2-2 [822 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-3 [927 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.25-1 [19.5 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.27-1 [129 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-1+b5 [104 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-1 [10.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-2 [7448 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-2 [8992 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.009-1 [11.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.21-1 [50.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.26-1 [28.7 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-1 [197 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.10-1 [91.0 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-5 [88.3 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7573 kB in 0s (25.1 MB/s) Selecting previously unselected package diffstat. (Reading database ... 36240 files and directories currently installed.) Preparing to unpack .../000-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../001-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../002-gpgconf_2.2.27-3_amd64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../003-libsqlite3-0_3.37.2-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.37.2-2) ... Selecting previously unselected package gpg. Preparing to unpack .../004-gpg_2.2.27-3_amd64.deb ... Unpacking gpg (2.2.27-3) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../005-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. 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Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl:amd64 (4.27-1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-26) ... Setting up libsqlite3-0:amd64 (3.37.2-2) ... Setting up libyaml-libyaml-perl (0.83+ds-1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.5-1) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-1+b5) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.21-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up libperlio-utf8-strict-perl (0.009-1) ... Setting up libio-prompt-tiny-perl (0.003-1) ... Setting up lzip (1.22-5) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libsyntax-keyword-try-perl (0.26-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.27-3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.27-3) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-validate-uri-perl (0.07-1) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.114.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.33-3) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 80224 Build-Time: 90 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 40 Job: disulfinder_1.2.11-12 Lintian: pass Machine Architecture: amd64 Package: disulfinder Package-Time: 142 Source-Version: 1.2.11-12 Space: 80224 Status: successful Version: 1.2.11-12 -------------------------------------------------------------------------------- Finished at 2022-01-21T14:29:02Z Build needed 00:02:22, 80224k disk space