sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on mjolnir.einval.org +==============================================================================+ | disulfinder 1.2.11-13 (i386) Fri, 25 Sep 2026 04:53:07 +0000 | +==============================================================================+ Package: disulfinder Version: 1.2.11-13 Source Version: 1.2.11-13 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.asqE7FvLoc... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Fri, 25 Sep 2026 04:53:24 +0000 | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [193 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [12.0 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [10.7 MB] Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [10.4 MB] Fetched 33.3 MB in 8s (4349 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: init-system-helpers libselinux1 libsystemd0 libudev1 linux-libc-dev mawk 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2805 kB of archives. After this operation, 17.4 kB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 init-system-helpers all 1.69+nmu3 [37.3 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libselinux1 arm64 3.11-2.1 [81.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 262-1 [431 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 262-1 [130 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 mawk arm64 1.3.4.20260302-2 [134 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev all 7.2.7-1 [1991 kB] Fetched 2805 kB in 0s (52.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69+nmu3_all.deb ... Unpacking init-system-helpers (1.69+nmu3) over (1.69+nmu2) ... Setting up init-system-helpers (1.69+nmu3) ... (Reading database ... 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Processing triggers for libc-bin (2.43-6) ... +------------------------------------------------------------------------------+ | Fetch source files Fri, 25 Sep 2026 04:53:43 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'disulfinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/disulfinder.git Please use: git clone https://salsa.debian.org/med-team/disulfinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2492 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main disulfinder 1.2.11-13 (dsc) [2324 B] Get:2 http://mirror.einval.org/debian unstable/main disulfinder 1.2.11-13 (tar) [2481 kB] Get:3 http://mirror.einval.org/debian unstable/main disulfinder 1.2.11-13 (diff) [8864 B] Fetched 2492 kB in 0s (8632 kB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 25 Sep 2026 04:53:46 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-i386:arm64, apt-utils:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-i386:arm64, apt-utils:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-9goFpP/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Sources [770 B] Get:5 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Packages [812 B] Fetched 2191 B in 0s (98.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-16-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-i686-linux-gnu g++-i686-linux-gnu gcc-16-base:i386 gcc-16-cross-base gcc-16-i686-linux-gnu gcc-16-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libboost-dev:i386 libboost-exception1.90-dev:i386 libboost-graph-dev:i386 libboost-graph1.90-dev:i386 libboost-graph1.90.0:i386 libboost-regex1.90-dev:i386 libboost-regex1.90.0:i386 libboost-serialization1.90-dev:i386 libboost-serialization1.90.0:i386 libboost-test1.90-dev:i386 libboost-test1.90.0:i386 libboost1.90-dev:i386 libc-gconv-modules-extra:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libdebhelper-perl libelf1t64 libf2c2:i386 libf2c2-dev:i386 libfile-stripnondeterminism-perl libgcc-16-dev:i386 libgcc-16-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libitm1:i386 libitm1-i386-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libstdc++-16-dev:i386 libstdc++-16-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-i386-cross m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libboost-doc:i386 graphviz:i386 libboost1.90-doc:i386 libboost-atomic1.90-dev:i386 libboost-chrono1.90-dev:i386 libboost-container1.90-dev:i386 libboost-context1.90-dev:i386 libboost-contract1.90-dev:i386 libboost-coroutine1.90-dev:i386 libboost-date-time1.90-dev:i386 libboost-fiber1.90-dev:i386 libboost-filesystem1.90-dev:i386 libboost-graph-parallel1.90-dev:i386 libboost-iostreams1.90-dev:i386 libboost-json1.90-dev:i386 libboost-locale1.90-dev:i386 libboost-log1.90-dev:i386 libboost-math1.90-dev:i386 libboost-mpi-python1.90-dev:i386 libboost-mpi1.90-dev:i386 libboost-nowide1.90-dev:i386 libboost-numpy1.90-dev:i386 libboost-program-options1.90-dev:i386 libboost-python1.90-dev:i386 libboost-random1.90-dev:i386 libboost-stacktrace1.90-dev:i386 libboost-thread1.90-dev:i386 libboost-timer1.90-dev:i386 libboost-type-erasure1.90-dev:i386 libboost-url1.90-dev:i386 libboost-wave1.90-dev:i386 libboost1.90-tools-dev:i386 libmpfrc++-dev:i386 libntl-dev:i386 glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 manpages-dev:i386 libstdc++-16-doc:i386 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests libidn2-0:i386 libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-16-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-i686-linux-gnu g++-i686-linux-gnu gcc-16-base:i386 gcc-16-cross-base gcc-16-i686-linux-gnu gcc-16-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libboost-dev:i386 libboost-exception1.90-dev:i386 libboost-graph-dev:i386 libboost-graph1.90-dev:i386 libboost-graph1.90.0:i386 libboost-regex1.90-dev:i386 libboost-regex1.90.0:i386 libboost-serialization1.90-dev:i386 libboost-serialization1.90.0:i386 libboost-test1.90-dev:i386 libboost-test1.90.0:i386 libboost1.90-dev:i386 libc-gconv-modules-extra:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libdebhelper-perl libelf1t64 libf2c2:i386 libf2c2-dev:i386 libfile-stripnondeterminism-perl libgcc-16-dev:i386 libgcc-16-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libitm1:i386 libitm1-i386-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libstdc++-16-dev:i386 libstdc++-16-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-i386-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 566 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.47-4 [345 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.47-4 [104 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.47-4 [43.2 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 1.0-5 [328 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2+b2 [69.1 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.24.1-1 [1270 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.42.3-1 [99.1 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-3 [47.2 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1+b1 [1455 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.21-1 [323 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.73-2 [516 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.19-2 [891 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autopoint all 1.0-5 [820 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 gcc-16-i686-linux-gnu-base arm64 16.2.0-3cross1 [38.9 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 cpp-16-i686-linux-gnu arm64 16.2.0-3cross1 [11.7 MB] Get:19 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:16.1.0-3 [4464 B] Get:20 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.47-6 [1527 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.43-3cross8 [1496 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 16.2.0-3cross1 [87.7 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 16.2.0-3cross1 [153 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 16.2.0-3cross1 [29.0 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 16.2.0-3cross1 [8252 B] Get:27 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 16.2.0-3cross1 [2727 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 16.2.0-3cross1 [832 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 16.2.0-3cross1 [1106 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 16.2.0-3cross1 [230 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libgcc-16-dev-i386-cross all 16.2.0-3cross1 [2654 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 gcc-16-i686-linux-gnu arm64 16.2.0-3cross1 [22.7 MB] Get:33 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:16.1.0-3 [1440 B] Get:34 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 7.2.7-1 [12.6 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.43-3cross8 [1879 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libstdc++-16-dev-i386-cross all 16.2.0-3cross1 [2749 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 g++-16-i686-linux-gnu arm64 16.2.0-3cross1 [12.8 MB] Get:38 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:16.1.0-3 [1192 B] Get:39 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.12 [3544 B] Get:40 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 14.5 [77.7 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.6.2-3 [552 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 23 [12.7 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:46 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.196-1 [57.9 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.17-1 [100 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.4.2-1 [455 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml2-16 arm64 2.15.4+dfsg-1 [602 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 1.0-5 [2549 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 debhelper all 14.5 [944 kB] Get:54 http://mirror.einval.org/debian unstable/main i386 gcc-16-base i386 16.2.0-3 [38.7 kB] Get:55 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 16.2.0-3 [87.7 kB] Get:56 http://mirror.einval.org/debian unstable/main i386 libc-gconv-modules-extra i386 2.43-6 [1100 kB] Get:57 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.43-6 [1737 kB] Get:58 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 16.2.0-3 [2734 kB] Get:59 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 16.2.0-3 [8156 B] Get:60 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 16.2.0-3 [153 kB] Get:61 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 16.2.0-3 [29.0 kB] Get:62 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 16.2.0-3 [857 kB] Get:63 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 16.2.0-3 [1107 kB] Get:64 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 16.2.0-3 [230 kB] Get:65 http://mirror.einval.org/debian unstable/main i386 libgcc-16-dev i386 16.2.0-3 [2662 kB] Get:66 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.43-6 [1886 kB] Get:67 http://mirror.einval.org/debian unstable/main i386 libstdc++-16-dev i386 16.2.0-3 [2769 kB] Get:68 http://mirror.einval.org/debian unstable/main i386 libboost1.90-dev i386 1.90.0-6.1+b1 [11.3 MB] Get:69 http://mirror.einval.org/debian unstable/main i386 libboost-dev i386 1.90.0.2+nmu1 [3200 B] Get:70 http://mirror.einval.org/debian unstable/main i386 libboost-exception1.90-dev i386 1.90.0-6.1+b1 [222 kB] Get:71 http://mirror.einval.org/debian unstable/main i386 libboost-graph1.90.0 i386 1.90.0-6.1+b1 [368 kB] Get:72 http://mirror.einval.org/debian unstable/main i386 libboost-regex1.90.0 i386 1.90.0-6.1+b1 [330 kB] Get:73 http://mirror.einval.org/debian unstable/main i386 libboost-regex1.90-dev i386 1.90.0-6.1+b1 [349 kB] Get:74 http://mirror.einval.org/debian unstable/main i386 libboost-serialization1.90.0 i386 1.90.0-6.1+b1 [342 kB] Get:75 http://mirror.einval.org/debian unstable/main i386 libboost-serialization1.90-dev i386 1.90.0-6.1+b1 [382 kB] Get:76 http://mirror.einval.org/debian unstable/main i386 libboost-test1.90.0 i386 1.90.0-6.1+b1 [495 kB] Get:77 http://mirror.einval.org/debian unstable/main i386 libboost-test1.90-dev i386 1.90.0-6.1+b1 [571 kB] Get:78 http://mirror.einval.org/debian unstable/main i386 libboost-graph1.90-dev i386 1.90.0-6.1+b1 [396 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 libboost-graph-dev i386 1.90.0.2+nmu1 [3096 B] Get:80 http://mirror.einval.org/debian unstable/main i386 libf2c2 i386 20240504-1+b3 [127 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libf2c2-dev i386 20240504-1+b3 [138 kB] Preconfiguring packages ... Fetched 105 MB in 1s (86.2 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_arm64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_arm64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-5_arm64.deb ... Unpacking gettext-base (1.0-5) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_arm64.deb ... 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Setting up libboost-regex1.90.0:i386 (1.90.0-6.1+b1) ... Setting up libgcc-16-dev:i386 (16.2.0-3) ... Setting up libstdc++-16-dev:i386 (16.2.0-3) ... Setting up libboost1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libboost-dev:i386 (1.90.0.2+nmu1) ... Setting up libboost-serialization1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libboost-exception1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libboost-regex1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libboost-test1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libboost-graph1.90-dev:i386 (1.90.0-6.1+b1) ... Setting up libboost-graph-dev:i386 (1.90.0.2+nmu1) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... +------------------------------------------------------------------------------+ | Check architectures Fri, 25 Sep 2026 04:54:41 +0000 | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment Fri, 25 Sep 2026 04:54:42 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-arm64 #1 SMP Debian 6.12.107-1 (2026-08-29) arm64 (aarch64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-6 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-i386-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-i386-cross_16.2.0-3cross1 linux-libc-dev_7.2.7-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8+b1 bash_5.3-4 binutils_2.47-6 binutils-aarch64-linux-gnu_2.47-6 binutils-common_2.47-6 binutils-i686-linux-gnu_2.47-6 bsdextrautils_2.42.3-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-aarch64-linux-gnu_16.2.0-3 cpp-16-i686-linux-gnu_16.2.0-3cross1 cpp-aarch64-linux-gnu_4:16.1.0-3 cpp-i686-linux-gnu_4:16.1.0-3 crossbuild-essential-i386_12.12 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1+b1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-aarch64-linux-gnu_16.2.0-3 g++-16-i686-linux-gnu_16.2.0-3cross1 g++-aarch64-linux-gnu_4:16.1.0-3 g++-i686-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-aarch64-linux-gnu_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-cross-base_16.2.0-3cross1 gcc-16-i686-linux-gnu_16.2.0-3cross1 gcc-16-i686-linux-gnu-base_16.2.0-3cross1 gcc-aarch64-linux-gnu_4:16.1.0-3 gcc-i686-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1+b1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25+b1 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libasan8-i386-cross_16.2.0-3cross1 libatomic1_16.2.0-3 libatomic1-i386-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbinutils_2.47-6 libblkid1_2.42.3-1 libboost-dev_1.90.0.2+nmu1 libboost-exception1.90-dev_1.90.0-6.1+b1 libboost-graph-dev_1.90.0.2+nmu1 libboost-graph1.90-dev_1.90.0-6.1+b1 libboost-graph1.90.0_1.90.0-6.1+b1 libboost-regex1.90-dev_1.90.0-6.1+b1 libboost-regex1.90.0_1.90.0-6.1+b1 libboost-serialization1.90-dev_1.90.0-6.1+b1 libboost-serialization1.90.0_1.90.0-6.1+b1 libboost-test1.90-dev_1.90.0-6.1+b1 libboost-test1.90.0_1.90.0-6.1+b1 libboost1.90-dev_1.90.0-6.1+b1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-6 libc-dev-bin_2.43-6 libc-gconv-modules-extra_2.43-6 libc6_2.43-6 libc6-dev_2.43-6 libc6-dev-i386-cross_2.43-3cross8 libc6-i386-cross_2.43-3cross8 libcap-ng0_0.9.6-1 libcc1-0_16.2.0-3 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-6 libctf0_2.47-6 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libf2c2_20240504-1+b3 libf2c2-dev_20240504-1+b3 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-3 libgcc-16-dev-i386-cross_16.2.0-3cross1 libgcc-s1_16.2.0-3 libgcc-s1-i386-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-3 libgomp1-i386-cross_16.2.0-3cross1 libgprofng0_2.47-6 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-3 libisl23_0.28-1 libitm1_16.2.0-3 libitm1-i386-cross_16.2.0-3cross1 libjansson4_2.15.1-1 liblsan0_16.2.0-3 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.3-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libnettle8t64_3.10.2-1+b1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libquadmath0_16.2.0-3 libquadmath0-i386-cross_16.2.0-3cross1 libseccomp2_2.6.1-1+b1 libselinux1_3.11-2.1 libsframe3_2.47-6 libsmartcols1_2.42.3-1 libssl3t64_3.6.4-1 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-i386-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-i386-cross_16.2.0-3cross1 libsystemd0_262-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-3 libubsan1_16.2.0-3 libubsan1-i386-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262-1 libunistring5_1.4.2-1 libuuid1_2.42.3-1 libxml2-16_2.15.4+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.7-1 linux-libc-dev-i386-cross_7.2.7-1 login_1:4.16.0-2+really2.42.3-1 login.defs_1:4.19.3-2 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.4-1 patch_2.8-2+b1 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 util-linux_2.42.3-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 25 Sep 2026 04:54:42 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: disulfinder Binary: disulfinder, disulfinder-data Architecture: any all Version: 1.2.11-13 Maintainer: Debian Med Packaging Team Uploaders: Guy Yachdav , Laszlo Kajan , Andreas Tille Homepage: https://disulfind.dsi.unifi.it/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/disulfinder Vcs-Git: https://salsa.debian.org/med-team/disulfinder.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-dev, libboost-graph-dev, libf2c2-dev, debhelper Package-List: disulfinder deb science optional arch=any disulfinder-data deb science optional arch=all Checksums-Sha1: 275abbe8b4ac8e7f83d8a38c81c7f75c0ec7481e 2480613 disulfinder_1.2.11.orig.tar.gz 7b6f50d164eff3540de81d4841a19093f4719b39 8864 disulfinder_1.2.11-13.debian.tar.xz Checksums-Sha256: d653aaac3ea26e9f6106a371de4f43d05b781a8b8b690c97820e4b27ea9d3495 2480613 disulfinder_1.2.11.orig.tar.gz ff3cad8259a3df308dc081e6aa1058bcbc15b5e67946bada74c6ad155760635a 8864 disulfinder_1.2.11-13.debian.tar.xz Files: a4f0ed137b56fc0674a207351b659eba 2480613 disulfinder_1.2.11.orig.tar.gz 0d5e2886f3f8110f1589a1338471342d 8864 disulfinder_1.2.11-13.debian.tar.xz Dgit: 5148b7ee784ca97b82588e995b85b62c6dcd9c12 debian archive/debian/1.2.11-13 https://git.dgit.debian.org/disulfinder -----BEGIN PGP SIGNATURE----- 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dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting disulfinder in /build/reproducible-path/disulfinder-1.2.11 dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying variable_length_array dpkg-source: info: applying unknown_escape dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc-15.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package disulfinder dpkg-buildpackage: info: source version 1.2.11-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' # Workaround patches reordering deps.mk during cleaning. cp disulfind/src/deps.mk disulfind/src/deps.mk.orig dh_auto_clean make -j1 distclean make[2]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' make -C NN clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/NN' make -C Common clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common' make -C eig clean make[5]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[5]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common' make -C SVM clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' cd SVM && make clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/SVM' cd Input && make clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Input' cd Output && make clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Output' cd FSA-Alignment && make clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/FSA-Alignment' cd BRNN && make clean make[4]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[2]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' mv disulfind/src/deps.mk.orig disulfind/src/deps.mk make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/disulfinder.substvars debian/disulfinder-data.substvars debian/files rm -fr -- debian/disulfinder/ debian/tmp/ debian/disulfinder-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' dh_auto_build --no-parallel make -j1 INSTALL="install --strip-program=true" CXX=i686-linux-gnu-g\+\+ CC=i686-linux-gnu-gcc make[2]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' make -C disulfind/src disulfinder make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o In file included from Input/utils.h:2, from Input/GlobalDescriptor.cpp:3: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o In file included from Input/utils.h:2, from Input/createBRNNDataset.h:1, from Input/createBRNNDataset.cpp:2: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o In file included from Input/utils.h:2, from Input/createKernelDataset.h:1, from Input/createKernelDataset.cpp:2: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o Input/Protein.cpp: In member function ‘void Protein::ReadCB513(std::istream&)’: Input/Protein.cpp:327:7: warning: variable ‘noaligns’ set but not used [-Wunused-but-set-variable=] 327 | int noaligns = 0; | ^~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c SVM/SVMClassifier.cpp -o SVM/SVMClassifier.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeHTMLOutput.cpp -o Output/makeHTMLOutput.o Output/makeHTMLOutput.cpp: In function ‘void makeHTMLOutput(std::string, const char*, int, std::string, std::ostream&)’: Output/makeHTMLOutput.cpp:162:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~~ Output/makeHTMLOutput.cpp:162:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/utils.cpp -o Output/utils.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeASCIIOutput.cpp -o Output/makeASCIIOutput.o Output/makeASCIIOutput.cpp: In function ‘void makeASCIIOutput(std::string, const char*, int, std::string, std::ostream&)’: Output/makeASCIIOutput.cpp:144:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~~ Output/makeASCIIOutput.cpp:144:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/fsa.cpp -o FSA-Alignment/fsa.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/viterbi_aligner.cpp -o FSA-Alignment/viterbi_aligner.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/multi-array.cpp -o NN/multi-array.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/array.cpp -o NN/array.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-model.cpp -o NN/brnn-model.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-test.cpp -o NN/brnn-test.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Node.cpp -o BRNN/RNNs/Node.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/StructureSearch.cpp -o BRNN/RNNs/StructureSearch.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DataSet.cpp -o BRNN/RNNs/DataSet.o In file included from BRNN/RNNs/DataSet.cpp:1: BRNN/RNNs/DataSet.h:19:1: warning: ‘typedef’ was ignored in this declaration 19 | typedef struct StructuredInstanceTemplate { | ^~~~~~~ BRNN/RNNs/DataSet.h: In constructor ‘DataSet::iterator::iterator(DataSet&)’: BRNN/RNNs/DataSet.h:86:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 86 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h: In member function ‘bool DataSet::iterator::operator++()’: BRNN/RNNs/DataSet.h:116:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 116 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h:135:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 135 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.cpp: In constructor ‘DataSet::DataSet(const char*, const char*)’: BRNN/RNNs/DataSet.cpp:69:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 69 | if(pos == string::npos) | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.cpp: In member function ‘bool DataSet::loadInstances(const char*)’: BRNN/RNNs/DataSet.cpp:141:7: warning: unused variable ‘ng’ [-Wunused-variable] 141 | int ng = 1; | ^~ BRNN/RNNs/DataSet.cpp: At global scope: BRNN/RNNs/DataSet.cpp:14:12: warning: ‘int one(const dirent*)’ defined but not used [-Wunused-function] 14 | static int one(const struct dirent* unused) { | ^~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DPAG.cpp -o BRNN/RNNs/DPAG.o BRNN/RNNs/DPAG.cpp: In function ‘float PRMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:48:7: warning: unused variable ‘global_predicted_positives’ [-Wunused-variable] 48 | int global_predicted_positives = boost::num_edges(g), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:49:5: warning: unused variable ‘global_actual_positives’ [-Wunused-variable] 49 | global_actual_positives = boost::num_edges(gtarget), | ^~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:50:5: warning: variable ‘global_true_positives’ set but not used [-Wunused-but-set-variable=] 50 | global_true_positives = 0; | ^~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:52:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 52 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘float PrecisionMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:302:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 302 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘std::pair globalPRMeasure(const DPAG&, const DPAG&, int&, int&, int&, int&, int&, int&, float&)’: BRNN/RNNs/DPAG.cpp:361:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 361 | Vertex_d graphNode, targetNode, targetNode1; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘ConfusionTable getPredictionIndexes(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:560:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::vertices_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 559 | require(true_positives + true_negatives + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | false_positives + false_negatives == | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 561 | boost::num_vertices(gpred) * (boost::num_vertices(gpred)-1) / 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:471:9: warning: unused variable ‘weight’ [-Wunused-variable] 471 | float weight = 1.0 / boost::num_vertices(gpred); | ^~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘float RecallMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:573:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 573 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘bool equal(const DPAG&, const DPAG&)’: BRNN/RNNs/DPAG.cpp:746:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 746 | for(int i=0; i, boost::property >, boost::adjacency_list, boost::property > > dpag_to_rnndpag(const DPAG&)’: BRNN/RNNs/DPAG.cpp:832:24: warning: comparison of integer expressions of different signedness: ‘boost::vec_adj_list_vertex_id_map, unsigned int>::value_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 832 | if(vertex_id[*v_i] != n_vertices-1) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:839:29: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘boost::vec_adj_list_vertex_id_map, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 839 | if(children.front() == vertex_id[*v_i]+1) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:844:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 844 | for(int i=0; i, int>::value_type’ {aka ‘int’} and ‘boost::vec_adj_list_vertex_id_map, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 862 | if((*it).second.front() == vertex_id[*v_i]-1) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:867:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 867 | for(int i=0; i<(*it).second.size(); i++) | ~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:813:12: warning: unused variable ‘node’ [-Wunused-variable] 813 | Vertex_d node; | ^~~~ BRNN/RNNs/DPAG.cpp: In function ‘DPAG rnndpag_to_dpag(const std::pair, boost::property >, boost::adjacency_list, boost::property > >&)’: BRNN/RNNs/DPAG.cpp:878:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable=] 878 | VertexId vertex_id = boost::get(boost::vertex_index, g);; | ^~~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Options.cpp -o BRNN/RNNs/Options.o BRNN/RNNs/Options.cpp: In member function ‘virtual void Options::parse_config(const std::string&)’: BRNN/RNNs/Options.cpp:30:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 30 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:36:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 36 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:42:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 42 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:47:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 47 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:61:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 61 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:79:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 79 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:85:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 85 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:90:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 90 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:99:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 99 | if(_input_mask.size() != _input_dimension) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp: In member function ‘virtual void Options::parse_args(int, char**)’: BRNN/RNNs/Options.cpp:138:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 138 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:144:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 144 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:150:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 150 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:155:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 155 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:169:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 169 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:187:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 187 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:193:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 193 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:198:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 198 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:207:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(_input_mask.size() != _input_dimension) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/protein_util.cpp -o BRNN/protein_util.o In file included from BRNN/protein_util.cpp:1: BRNN/protein_util.h: In constructor ‘Residue::Residue(int, int, char, float, float, float, float, float, char)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h: In copy constructor ‘Residue::Residue(const Residue&)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:211:13: warning: ‘Residue::_bp2’ will be initialized after [-Wreorder] 211 | int _bp1, _bp2; // bridge partners | ^~~~ BRNN/protein_util.h:206:24: warning: ‘int Residue::_ssp’ [-Wreorder] 206 | int _index, _sindex, _ssp; // DSSP index, sequential index and disulfide bond partner | ^~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h: In constructor ‘SSegment::SSegment(char)’: BRNN/protein_util.h:241:16: warning: ‘SSegment::_baricentre’ will be initialized after [-Wreorder] 241 | Coordinate3D _baricentre; // baricentrum of C_alpha atoms set | ^~~~~~~~~~~ BRNN/protein_util.h:239:18: warning: ‘SSegment::Hydrophobicity SSegment::_hydr’ [-Wreorder] 239 | Hydrophobicity _hydr; // hydropatic tendency (?!) of the segment | ^~~~~ BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] 245 | SSegment(char symbol): | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/16/cassert:46, from BRNN/protein_util.cpp:2: BRNN/protein_util.cpp: In member function ‘void Chain::setSShydrophobicity()’: BRNN/protein_util.cpp:365:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 365 | assert(resHydrScales.size() == numResidues()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ BRNN/protein_util.cpp:380:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 380 | if(r_i >= resHydrScales.size()) r_i = resHydrScales.size()-1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ BRNN/protein_util.cpp:386:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 386 | assert(hAvg.size() == (*c_it).numResidues()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BRNN/protein_util.cpp:391:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 391 | for(int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 401 | assert(seq_pos == resHydrScales.size()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ BRNN/protein_util.cpp: In member function ‘void Chain::parseDsspFile(std::istream&)’: BRNN/protein_util.cpp:251:39: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 251 | map ss_map; ss_map['H'] = 'H'; ss_map['E'] = 'E'; In file included from /usr/i686-linux-gnu/include/c++/16/map:64, from BRNN/protein_util.h:9: /usr/i686-linux-gnu/include/c++/16/bits/stl_tree.h:214:12: note: at offset 17 into destination object ‘std::_Rb_tree_node >::std::_Rb_tree_node_base’ of size 16 214 | struct _Rb_tree_node : public _Rb_tree_node_base | ^~~~~~~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/blast_util.cpp -o BRNN/blast_util.o BRNN/blast_util.cpp: In member function ‘void PSSM::parsePsiBlastReport(const char*)’: BRNN/blast_util.cpp:34:13: warning: unused variable ‘prof’ [-Wunused-variable] 34 | Profile prof; | ^~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/rnn_util.cpp -o BRNN/rnn_util.o In file included from BRNN/rnn_util.cpp:4: BRNN/RNNs/DataSet.h:19:1: warning: ‘typedef’ was ignored in this declaration 19 | typedef struct StructuredInstanceTemplate { | ^~~~~~~ BRNN/RNNs/DataSet.h: In constructor ‘DataSet::iterator::iterator(DataSet&)’: BRNN/RNNs/DataSet.h:86:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 86 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h: In member function ‘bool DataSet::iterator::operator++()’: BRNN/RNNs/DataSet.h:116:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 116 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h:135:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 135 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from BRNN/rnn_util.cpp:7: BRNN/protein_util.h: In constructor ‘Residue::Residue(int, int, char, float, float, float, float, float, char)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h: In copy constructor ‘Residue::Residue(const Residue&)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:211:13: warning: ‘Residue::_bp2’ will be initialized after [-Wreorder] 211 | int _bp1, _bp2; // bridge partners | ^~~~ BRNN/protein_util.h:206:24: warning: ‘int Residue::_ssp’ [-Wreorder] 206 | int _index, _sindex, _ssp; // DSSP index, sequential index and disulfide bond partner | ^~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h: In constructor ‘SSegment::SSegment(char)’: BRNN/protein_util.h:241:16: warning: ‘SSegment::_baricentre’ will be initialized after [-Wreorder] 241 | Coordinate3D _baricentre; // baricentrum of C_alpha atoms set | ^~~~~~~~~~~ BRNN/protein_util.h:239:18: warning: ‘SSegment::Hydrophobicity SSegment::_hydr’ [-Wreorder] 239 | Hydrophobicity _hydr; // hydropatic tendency (?!) of the segment | ^~~~~ BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] 245 | SSegment(char symbol): | ^~~~~~~~ BRNN/rnn_util.cpp: In function ‘void create_connectivity_input_data(const std::string&, const std::string&, int, int, const std::string&)’: BRNN/rnn_util.cpp:233:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 233 | for(int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 277 | if(i >=0 && i < pssm.size()) | ~~^~~~~~~~~~~~~ BRNN/rnn_util.cpp: In function ‘void rnn_predict_disulphides(const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, int)’: BRNN/rnn_util.cpp:359:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::edges_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 359 | require(B == boost::num_edges(candidate) && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:348:16: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable=] 348 | VertexId vertex_id = boost::get(boost::vertex_index, candidate); | ^~~~~~~~~ BRNN/rnn_util.cpp:405:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, boost::property > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 405 | for(int j=0; j, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::edges_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 406 | require(B == boost::num_edges(bestPatterns[j]) && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:407:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::vertices_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 407 | B == boost::num_vertices(bestPatterns[j]) / 2, | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:378:18: warning: unused variable ‘nodes’ [-Wunused-variable] 378 | vector *nodes = it.currenTONodes(); | ^~~~~ In file included from BRNN/rnn_util.cpp:5: BRNN/RNNs/RecursiveNN.h: In instantiation of ‘RecursiveNN::RecursiveNN(const char*) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’: BRNN/rnn_util.cpp:88:73: required from here 88 | rnn = new RecursiveNN(model.c_str()); | ^ BRNN/RNNs/RecursiveNN.h:1018:13: warning: unused variable ‘trasd’ [-Wunused-variable] 1018 | TrasdType trasd = Options::instance()->getTrasductionType(); | ^~~~~ BRNN/RNNs/RecursiveNN.h:1026:23: warning: variable ‘indexes’ set but not used [-Wunused-but-set-variable=] 1026 | std::pair indexes = Options::instance()->getLayersIndexes(); | ^~~~~~~ BRNN/RNNs/RecursiveNN.h:1047:7: warning: unused variable ‘default_precision’ [-Wunused-variable] 1047 | int default_precision = is.precision(); | ^~~~~~~~~~~~~~~~~ In file included from BRNN/rnn_util.cpp:6: BRNN/RNNs/StructureSearch.h: In instantiation of ‘std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN]’: BRNN/rnn_util.cpp:396:37: required from here 396 | search.ConnectivityPatternSearch(rnn, candidates, bestScores); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/StructureSearch.h:977:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 977 | for(int i=0; i<_nodesInputs.size(); ++i) | ~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/StructureSearch.h:984:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, boost::property > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 984 | for(int i=0; i::fPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/RecursiveNN.h:1356:3: required from ‘void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’ 1356 | fPropagateInput(toNodes, sdags.first); | ^~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:99:32: required from here 99 | rnn->propagateStructuredInput(*nodes, *dpags); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1390:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1390 | require(_n == toNodes[t]->_encodedInput.size(), "Error in input dim!"); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1415:45: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1415 | out_i!=out_end && edge_id[*out_i] < _v; ++out_i) { BRNN/RNNs/RecursiveNN.h:1418:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1418 | for(int i=_n + edge_id[*out_i]*_m; i<_n + _m*(edge_id[*out_i] + 1); i++) { | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1384:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable=] 1384 | VertexId vertex_id = boost::get(boost::vertex_index, sdag); | ^~~~~~~~~ BRNN/RNNs/RecursiveNN.h: In instantiation of ‘void RecursiveNN::bPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/RecursiveNN.h:1359:19: required from ‘void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’ 1359 | if(_process_dr) bPropagateInput(toNodes, sdags.second); | ^~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:99:32: required from here 99 | rnn->propagateStructuredInput(*nodes, *dpags); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1470:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1470 | for(int t=0; t::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1471 | require(_n == toNodes[t]->_encodedInput.size(), "Error!"); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1492:45: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1492 | out_i!=out_end && edge_id[*out_i] < _v; ++out_i) { BRNN/RNNs/RecursiveNN.h:1495:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1495 | for(int i=_n + edge_id[*out_i]*_m; i<_n + _m*(edge_id[*out_i] + 1); i++) { | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1465:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable=] 1465 | VertexId vertex_id = boost::get(boost::vertex_index, sdag); | ^~~~~~~~~ BRNN/RNNs/StructureSearch.h: In instantiation of ‘float StructureSearch::RNNMeasure(const DPAG&, RNN*, std::vector&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/StructureSearch.h:990:17: required from ‘std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN]’ 990 | RNNMeasure(candidates[i], net_scorer, _toNodes, localScores); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:396:37: required from here 396 | search.ConnectivityPatternSearch(rnn, candidates, bestScores); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/StructureSearch.h:186:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 186 | for(int i=0; i > Util::tokenize(const std::string&, const std::string&, bool)’: Util.cpp:135:12: warning: ‘void operator delete(void*, std::size_t)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 135 | delete str; | ^~~ Util.cpp:127:38: note: returned from ‘void* operator new [](std::size_t)’ 127 | char *str = new char[s.length()+1]; | ^ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c CommonMethods.cpp -o CommonMethods.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c ConfusionMatrix.cpp -o ConfusionMatrix.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Exception.cpp -o Exception.o i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Statistics.cpp -o Statistics.o i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/balanc.o eig/balanc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/balbak.o eig/balbak.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/cdiv.o eig/cdiv.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/elmhes.o eig/elmhes.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/eltran.o eig/eltran.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/hqr.o eig/hqr.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/hqr2.o eig/hqr2.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/rg.o eig/rg.c i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c coords.cpp -o coords.o i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/d_sign.o eig/d_sign.c ar rvs libCommon.a Vector.o Util.o CommonMethods.o ConfusionMatrix.o Exception.o Statistics.o eig/balanc.o eig/balbak.o eig/cdiv.o eig/elmhes.o eig/eltran.o eig/hqr.o eig/hqr2.o eig/rg.o coords.o eig/d_sign.o ar: creating libCommon.a a - Vector.o a - Util.o a - CommonMethods.o a - ConfusionMatrix.o a - Exception.o a - Statistics.o a - eig/balanc.o a - eig/balbak.o a - eig/cdiv.o a - eig/elmhes.o a - eig/eltran.o a - eig/hqr.o a - eig/hqr2.o a - eig/rg.o a - coords.o a - eig/d_sign.o make[4]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src/Common' i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/disulfinder-1.2.11=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c disulfinder.cpp -o disulfinder.o In file included from Input/utils.h:2, from disulfinder.cpp:8: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ i686-linux-gnu-g++ -o disulfinder disulfinder.o Input/GlobalDescriptor.o Input/createBRNNDataset.o Input/createKernelDataset.o Input/makeWindow.o Input/makeSparseVector.o Input/Protein.o Input/buildXfolds.o SVM/SVMClassifier.o Output/makeHTMLOutput.o Output/utils.o Output/makeASCIIOutput.o FSA-Alignment/fsa.o FSA-Alignment/viterbi_aligner.o NN/multi-array.o NN/array.o NN/brnn-model.o NN/brnn-test.o BRNN/RNNs/Node.o BRNN/RNNs/StructureSearch.o BRNN/RNNs/DataSet.o BRNN/RNNs/DPAG.o BRNN/RNNs/Options.o BRNN/protein_util.o BRNN/blast_util.o BRNN/rnn_util.o -Wl,-z,relro -Wl,-z,now -LCommon/ -lCommon make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' sed -e 's|__datadir__||g;s|__docdir__|/usr/share/doc/disulfinder|g;s|__pkgdatadir__||g;s|__PREFIX__|/usr|g;s|__sysconfdir__||g;s|__VERSION__|1.2.11|g;' "disulfinder.pod" | \ pod2man -c 'User Commands' -r '1.2.11' -name DISULFINDER > "disulfinder.1" make[2]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/disulfinder.substvars rm -fr -- debian/.debhelper/generated/disulfinder/ debian/disulfinder/ debian/tmp/ rm -f debian/disulfinder.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' /usr/bin/make DESTDIR=/build/reproducible-path/disulfinder-1.2.11/debian/disulfinder prefix=/usr install make[2]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' /usr/bin/make -C disulfind/src install make[3]: Entering directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' mkdir -p /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/bin cp disulfinder /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/bin/ mkdir -p /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder mkdir -p /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder/Models cp -r ../Models /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder/ && find /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder/ -depth -ignore_readdir_race -name .svn -execdir rm -rf {} \; rm -rf /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder/Models/conn/data/sequences_w5 rm -rf /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder/Predictions rm -rf /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder/tmp make[3]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11/disulfind/src' mkdir -p /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/man/man1 && cp disulfinder.1 /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/man/man1/ mkdir -p /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/doc/disulfinder/examples && cp examples/res_id_* /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/doc/disulfinder/examples/ make[2]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/disulfinder-1.2.11' dh_install mkdir -p /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder-data/usr/share/disulfinder mv /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder/usr/share/disulfinder/* /build/reproducible-path/disulfinder-1.2.11/debian/disulfinder-data/usr/share/disulfinder make[1]: Leaving directory '/build/reproducible-path/disulfinder-1.2.11' dh_installdocs -a install -m0755 -d debian/disulfinder/usr/share/doc/disulfinder cp --reflink=auto -a ./debian/upstream/metadata debian/disulfinder/usr/share/doc/disulfinder cp --reflink=auto -a ./debian/README.test debian/disulfinder/usr/share/doc/disulfinder cp --reflink=auto -a ./debian/tests/installation-test debian/disulfinder/usr/share/doc/disulfinder chmod -R u\+rw,go=rX debian/disulfinder/usr/share/doc install -p -m0644 debian/copyright debian/disulfinder/usr/share/doc/disulfinder/copyright dh_installchangelogs -a install -m0755 -d debian/disulfinder/usr/share/doc/disulfinder install -p -m0644 debian/.debhelper/generated/disulfinder/dh_installchangelogs.dch.trimmed debian/disulfinder/usr/share/doc/disulfinder/changelog.Debian install -p -m0644 ./ChangeLog debian/disulfinder/usr/share/doc/disulfinder/changelog dh_installman -a man-recode --to-code UTF-8 --suffix .dh-new debian/disulfinder/usr/share/man/man1/disulfinder.1 mv debian/disulfinder/usr/share/man/man1/disulfinder.1.dh-new debian/disulfinder/usr/share/man/man1/disulfinder.1 chmod 0644 -- debian/disulfinder/usr/share/man/man1/disulfinder.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/disulfinder chmod a-x usr/share/doc/disulfinder/changelog usr/share/doc/disulfinder/changelog.Debian usr/share/man/man1/disulfinder.1 gzip -9nf usr/share/doc/disulfinder/changelog usr/share/doc/disulfinder/changelog.Debian usr/share/man/man1/disulfinder.1 cd '/build/reproducible-path/disulfinder-1.2.11' dh_fixperms -a find debian/disulfinder ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/disulfinder/usr/share/doc -type f -a -true -a ! -regex 'debian/disulfinder/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/disulfinder/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/disulfinder/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/disulfinder -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/disulfinder/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a dwz -- debian/disulfinder/usr/bin/disulfinder dh_strip -a install -m0755 -d debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/6c i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/disulfinder/usr/bin/disulfinder debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/6c/825aa2aa3194b192c22ce8374910f293b6d410.debug chmod 0644 -- debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/6c/825aa2aa3194b192c22ce8374910f293b6d410.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/disulfinder/usr/bin/disulfinder i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/disulfinder/dbgsym-root/usr/lib/debug/.build-id/6c/825aa2aa3194b192c22ce8374910f293b6d410.debug debian/disulfinder/usr/bin/disulfinder install -m0755 -d debian/.debhelper/disulfinder/dbgsym-root/usr/share/doc ln -s disulfinder debian/.debhelper/disulfinder/dbgsym-root/usr/share/doc/disulfinder-dbgsym install -m0755 -d debian/.debhelper/disulfinder dh_makeshlibs -a rm -f debian/disulfinder/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/disulfinder/DEBIAN dpkg-shlibdeps -Tdebian/disulfinder.substvars debian/disulfinder/usr/bin/disulfinder dh_installdeb -a install -m0755 -d debian/disulfinder/DEBIAN dh_gencontrol -a install -m0755 -d debian/disulfinder/DEBIAN echo misc:Depends= >> debian/disulfinder.substvars echo misc:Pre-Depends= >> debian/disulfinder.substvars install -m0755 -d debian/.debhelper/disulfinder/dbgsym-root/DEBIAN dpkg-gencontrol -pdisulfinder -ldebian/changelog -Tdebian/disulfinder.substvars -cdebian/control -Pdebian/.debhelper/disulfinder/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=disulfinder-dbgsym -DDepends="disulfinder (= \${binary:Version})" -DDescription="debug symbols for disulfinder" -DBuild-Ids=6c825aa2aa3194b192c22ce8374910f293b6d410 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/disulfinder/dbgsym-root/DEBIAN/control dpkg-gencontrol -pdisulfinder -ldebian/changelog -Tdebian/disulfinder.substvars -cdebian/control -Pdebian/disulfinder chmod 0644 -- debian/disulfinder/DEBIAN/control dh_md5sums -a install -m0755 -d debian/disulfinder/DEBIAN cd debian/disulfinder >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/disulfinder/DEBIAN/md5sums install -m0755 -d debian/.debhelper/disulfinder/dbgsym-root/DEBIAN cd debian/.debhelper/disulfinder/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/disulfinder/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/disulfinder .. dpkg-deb: building package 'disulfinder' in '../disulfinder_1.2.11-13_i386.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/disulfinder/dbgsym-root .. dpkg-deb: building package 'disulfinder-dbgsym' in '../disulfinder-dbgsym_1.2.11-13_i386.deb'. dpkg-genbuildinfo --build=any -O../disulfinder_1.2.11-13_i386.buildinfo dpkg-genchanges --build=any -O../disulfinder_1.2.11-13_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-09-25T05:00:02Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Fri, 25 Sep 2026 05:00:02 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/disulfinder-1.2.11/ --------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/disulfinder-1.2.11/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 25 Sep 2026 05:00:04 +0000 | +------------------------------------------------------------------------------+ disulfinder_1.2.11-13_i386.changes: ----------------------------------- Format: 1.8 Date: Mon, 03 Nov 2025 21:25:29 +0100 Source: disulfinder Binary: disulfinder disulfinder-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 1.2.11-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: disulfinder - cysteines disulfide bonding state and connectivity predictor Closes: 1114089 Changes: disulfinder (1.2.11-13) unstable; urgency=medium . * Team upload. * d/rules: protect deps.mk on dh_auto_clean. This file may get changed if some patch reorders "include" stanzas. * gcc-15.patch: new: fix "complex" double definition. (Closes: #1114089) * d/watch: convert to v5 untrackable upstream. * d/copyright: remove reference to the old fsf address. * d/patches/*: normalise Last-Update timestamp. * d/control: drop redundant Rules-Requires-Root: no. * d/control: declare compliance to standards version 4.7.2. Checksums-Sha1: 0ba6afc9495968650de7cd196e5cc442bb1b5b04 3628388 disulfinder-dbgsym_1.2.11-13_i386.deb ed9556ce33776f2459b6c4dd85a1ecfbb15a36d9 5278 disulfinder_1.2.11-13_i386.buildinfo 39007751683001963ba40109e8c21525ca514bc8 268400 disulfinder_1.2.11-13_i386.deb Checksums-Sha256: 1b4da6c9d6a09ed00ce8cdb0252edf515d71a61f96faaa168484f4a915c36566 3628388 disulfinder-dbgsym_1.2.11-13_i386.deb 21e84b088d364a7e40929f69267cf88d5e6b49ac42f5ae3df01396b798efa585 5278 disulfinder_1.2.11-13_i386.buildinfo 40cab3bf1e95cf88922a2697b4e6addda2388209de719ad403b57d60c5abdfe4 268400 disulfinder_1.2.11-13_i386.deb Files: 368126c76914a8a12a620a82941b5909 3628388 debug optional disulfinder-dbgsym_1.2.11-13_i386.deb fd449b6be05d5697d6529d7073ebf1a2 5278 science optional disulfinder_1.2.11-13_i386.buildinfo 975d1812dc3562458697b5ff1b2f44ad 268400 science optional disulfinder_1.2.11-13_i386.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 25 Sep 2026 05:00:05 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: disulfinder Binary: disulfinder disulfinder-dbgsym Architecture: i386 Version: 1.2.11-13 Checksums-Md5: 368126c76914a8a12a620a82941b5909 3628388 disulfinder-dbgsym_1.2.11-13_i386.deb 975d1812dc3562458697b5ff1b2f44ad 268400 disulfinder_1.2.11-13_i386.deb Checksums-Sha1: 0ba6afc9495968650de7cd196e5cc442bb1b5b04 3628388 disulfinder-dbgsym_1.2.11-13_i386.deb 39007751683001963ba40109e8c21525ca514bc8 268400 disulfinder_1.2.11-13_i386.deb Checksums-Sha256: 1b4da6c9d6a09ed00ce8cdb0252edf515d71a61f96faaa168484f4a915c36566 3628388 disulfinder-dbgsym_1.2.11-13_i386.deb 40cab3bf1e95cf88922a2697b4e6addda2388209de719ad403b57d60c5abdfe4 268400 disulfinder_1.2.11-13_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 25 Sep 2026 05:00:01 +0000 Build-Path: /build/reproducible-path/disulfinder-1.2.11 Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-2), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8+b1), bash (= 5.3-4), binutils (= 2.47-6), binutils-aarch64-linux-gnu (= 2.47-6), binutils-common (= 2.47-6), bsdextrautils (= 2.42.3-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-aarch64-linux-gnu (= 16.2.0-3), cpp-aarch64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12+b1), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-aarch64-linux-gnu (= 16.2.0-3), g++-aarch64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-aarch64-linux-gnu (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-aarch64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1+b1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25+b1), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libbinutils (= 2.47-6), libblkid1 (= 2.42.3-1), libboost-dev (= 1.90.0.2+nmu1), libboost-exception1.90-dev (= 1.90.0-6.1+b1), libboost-graph-dev (= 1.90.0.2+nmu1), libboost-graph1.90-dev (= 1.90.0-6.1+b1), libboost-graph1.90.0 (= 1.90.0-6.1+b1), libboost-regex1.90-dev (= 1.90.0-6.1+b1), libboost-regex1.90.0 (= 1.90.0-6.1+b1), libboost-serialization1.90-dev (= 1.90.0-6.1+b1), libboost-serialization1.90.0 (= 1.90.0-6.1+b1), libboost-test1.90-dev (= 1.90.0-6.1+b1), libboost-test1.90.0 (= 1.90.0-6.1+b1), libboost1.90-dev (= 1.90.0-6.1+b1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-6), libc-dev-bin (= 2.43-6), libc-gconv-modules-extra (= 2.43-6), libc6 (= 2.43-6), libc6-dev (= 2.43-6), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libf2c2 (= 20240504-1+b3), libf2c2-dev (= 20240504-1+b3), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47-6), libhwasan0 (= 16.2.0-3), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), liblsan0 (= 16.2.0-3), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.3-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsframe3 (= 2.47-6), libsmartcols1 (= 2.42.3-1), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsystemd0 (= 262-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.3-1), libxml2-16 (= 2.15.4+dfsg-1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.7-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2+b1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), util-linux (= 2.42.3-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1762201529" +------------------------------------------------------------------------------+ | Package contents Fri, 25 Sep 2026 05:00:06 +0000 | +------------------------------------------------------------------------------+ disulfinder-dbgsym_1.2.11-13_i386.deb ------------------------------------- new Debian package, version 2.0. size 3628388 bytes: control archive=540 bytes. 390 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: disulfinder-dbgsym Source: disulfinder Version: 1.2.11-13 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 3714 Depends: disulfinder (= 1.2.11-13) Section: debug Priority: optional Description: debug symbols for disulfinder Build-Ids: 6c825aa2aa3194b192c22ce8374910f293b6d410 drwxr-xr-x root/root 0 2025-11-03 20:25 ./ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/lib/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/lib/debug/.build-id/6c/ -rw-r--r-- root/root 3792072 2025-11-03 20:25 ./usr/lib/debug/.build-id/6c/825aa2aa3194b192c22ce8374910f293b6d410.debug drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-11-03 20:25 ./usr/share/doc/disulfinder-dbgsym -> disulfinder disulfinder_1.2.11-13_i386.deb ------------------------------ new Debian package, version 2.0. size 268400 bytes: control archive=1276 bytes. 1297 bytes, 24 lines control 761 bytes, 10 lines md5sums Package: disulfinder Version: 1.2.11-13 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 764 Depends: libc6 (>= 2.43), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), disulfinder-data Section: science Priority: optional Homepage: https://disulfind.dsi.unifi.it/ Description: cysteines disulfide bonding state and connectivity predictor 'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks. . 'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern. drwxr-xr-x root/root 0 2025-11-03 20:25 ./ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/bin/ -rwxr-xr-x root/root 726680 2025-11-03 20:25 ./usr/bin/disulfinder drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/disulfinder/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/doc/disulfinder/ -rw-r--r-- root/root 971 2025-11-03 20:25 ./usr/share/doc/disulfinder/README.test -rw-r--r-- root/root 845 2025-11-03 20:25 ./usr/share/doc/disulfinder/changelog.Debian.gz -rw-r--r-- root/root 308 2011-08-26 10:41 ./usr/share/doc/disulfinder/changelog.gz -rw-r--r-- root/root 1944 2025-11-03 20:25 ./usr/share/doc/disulfinder/copyright drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/doc/disulfinder/examples/ -rw-r--r-- root/root 28389 2025-11-03 20:25 ./usr/share/doc/disulfinder/examples/res_id_41483.blastPsiMatTmb -rw-r--r-- root/root 3609 2025-11-03 20:25 ./usr/share/doc/disulfinder/examples/res_id_41483.expected_result -rw-r--r-- root/root 749 2025-11-03 20:25 ./usr/share/doc/disulfinder/installation-test -rw-r--r-- root/root 1528 2025-11-03 20:25 ./usr/share/doc/disulfinder/metadata drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/man/ drwxr-xr-x root/root 0 2025-11-03 20:25 ./usr/share/man/man1/ -rw-r--r-- root/root 2679 2025-11-03 20:25 ./usr/share/man/man1/disulfinder.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-9goFpP/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Sources [1352 B] Get:5 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ Packages [1429 B] Fetched 3396 B in 0s (129 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:i386 shared-mime-info t1utils ucf unzip 0 upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 23.8 MB of archives. After this operation, 98.6 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-9goFpP/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [832 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.6 [10.3 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.6+20260608-2 [125 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libproc2-1 arm64 2:4.0.7-1 [66.2 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.7-1 [971 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.3-4 [74.8 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.6.4-1 [1499 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20260816 [134 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-12+b1 [9412 B] Get:10 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:11 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0056 [47.1 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.8.0-2 [25.9 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.90.0-1 [1436 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b4 [754 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.17.0-1 [63.0 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.24.0-1 [129 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.2.0-4+b1 [293 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-5 [107 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.26.5-1 [440 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.21.0-2+b1 [46.9 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.13-1 [1434 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.22.1-3 [30.2 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.4-1+b1 [19.4 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.22.1-3 [74.7 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6+b2 [9444 B] Get:26 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.22.1-3 [314 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.22.1-3 [125 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-11 [17.1 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-11 [52.4 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.14+dfsg-2 [173 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.70.0-1 [87.9 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.24.0-1 [22.5 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.23.3-1 [61.0 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-6 [235 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libcurl4-gnutls arm64 8.23.0~rc1-2 [392 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libfyaml0 arm64 0.9.4-1 [245 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 3.1.1-1 [132 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.29-1 [58.5 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.2.0-2 [230 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.2.0-2 [618 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.69-1 [32.5 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 distro-info-data all 2026.08.20-1 [6292 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.61-5 [84.8 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2+b2 [57.6 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.12.3-2 [803 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-4 [168 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.4.9-7+b1 [118 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.8.1-1 [127 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-4 [22.7 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.53.4-2 [901 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.4.9-7+b1 [566 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.20.1-1 [3319 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.43+b1 [64.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b5 [10.7 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-3+b1 [15.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b7 [22.4 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.65-1 [44.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-2+b2 [116 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.37-1 [113 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-2+b2 [96.7 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.72-1 [217 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b8 [35.4 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.50-1+b2 [21.0 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libparams-someutil-perl arm64 1.11-1 [24.2 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.115-1 [10.4 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b3 [24.1 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1.1 [49.5 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:83 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.51-1 [137 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-3+b2 [30.9 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b7 [98.0 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.87-1+b1 [24.0 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libdistro-info-perl all 1.17 [5192 B] Get:99 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b6 [28.3 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:104 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:105 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libfile-libmagic-perl arm64 1.23-2+b4 [31.2 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.12-2 [19.2 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:122 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.96-2 [327 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.099-1 [229 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.24-1 [23.2 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.15-1 [10.7 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.83-1 [186 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-xs-perl arm64 0.59-1+b1 [33.1 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.16-2 [38.5 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b2 [50.7 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2.1+b2 [33.8 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002005-1 [19.5 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:146 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.6.2-1+b1 [141 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-4+b1 [11.3 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1+b3 [12.4 kB] Get:150 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:151 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.150-1 [56.4 kB] Get:152 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b6 [17.6 kB] Get:153 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b5 [11.5 kB] Get:154 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.637-1+b4 [41.1 kB] Get:155 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:156 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.006+ds-1+b1 [97.2 kB] Get:157 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.006+ds-1+b1 [99.3 kB] Get:158 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:159 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.49-1+b1 [64.4 kB] Get:160 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.31-1+b1 [27.0 kB] Get:161 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b6 [24.5 kB] Get:162 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b6 [8868 B] Get:163 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.18-1+b2 [13.3 kB] Get:164 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b3 [173 kB] Get:165 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:166 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.46-1+b1 [77.5 kB] Get:167 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.75-1+b1 [27.8 kB] Get:168 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.22-1 [117 kB] Get:169 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:170 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:171 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:172 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-8+b1 [299 kB] Get:173 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2+b1 [47.8 kB] Get:174 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.910.0+ds-1+b1 [44.9 kB] Get:175 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.13-2 [64.5 kB] Get:176 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b2 [82.0 kB] Get:177 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.5-1 [81.0 kB] Get:178 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b2 [57.5 kB] Get:179 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-31 [163 kB] Get:180 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.141.0 [1038 kB] Preconfiguring packages ... Fetched 23.8 MB in 0s (60.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 35605 files and directories currently installed.) Preparing to unpack .../000-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../001-libncursesw6_6.6+20260608-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:arm64. Preparing to unpack .../002-libproc2-1_2%3a4.0.7-1_arm64.deb ... Unpacking libproc2-1:arm64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.7-1_arm64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.6.4-1_arm64.deb ... Unpacking openssl (3.6.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20260816_all.deb ... Unpacking ca-certificates (20260816) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../007-libtext-charwidth-perl_0.04-12+b1_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../008-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../010-libffi8_3.8.0-2_arm64.deb ... Unpacking libffi8:arm64 (3.8.0-2) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../011-libglib2.0-0t64_2.90.0-1_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.90.0-1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../012-shared-mime-info_2.4-5+b4_arm64.deb ... Unpacking shared-mime-info (2.4-5+b4) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../013-libnghttp3-9_1.17.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.17.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../014-libngtcp2-16_1.24.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.24.0-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../015-libbrotli1_1.2.0-4+b1_arm64.deb ... Unpacking libbrotli1:arm64 (1.2.0-4+b1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../016-libidn2-0_2.3.8-5_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-5) ... Selecting previously unselected package libp11-kit0:arm64. 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Selecting previously unselected package libfyaml0:arm64. Preparing to unpack .../034-libfyaml0_0.9.4-1_arm64.deb ... Unpacking libfyaml0:arm64 (0.9.4-1) ... Selecting previously unselected package libstemmer0d:arm64. Preparing to unpack .../035-libstemmer0d_3.1.1-1_arm64.deb ... Unpacking libstemmer0d:arm64 (3.1.1-1) ... Selecting previously unselected package libxmlb2:arm64. Preparing to unpack .../036-libxmlb2_0.3.29-1_arm64.deb ... Unpacking libxmlb2:arm64 (0.3.29-1) ... Selecting previously unselected package libappstream5:arm64. Preparing to unpack .../037-libappstream5_1.2.0-2_arm64.deb ... Unpacking libappstream5:arm64 (1.2.0-2) ... Selecting previously unselected package appstream. Preparing to unpack .../038-appstream_1.2.0-2_arm64.deb ... Unpacking appstream (1.2.0-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../039-diffstat_1.69-1_arm64.deb ... Unpacking diffstat (1.69-1) ... Selecting previously unselected package distro-info-data. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../045-gpgconf_2.4.9-7+b1_arm64.deb ... Unpacking gpgconf (2.4.9-7+b1) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../046-libksba8_1.8.1-1_arm64.deb ... Unpacking libksba8:arm64 (1.8.1-1) ... Selecting previously unselected package libnpth0t64:arm64. 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Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../069-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../070-libclass-inspector-perl_1.36-3_all.deb ... Unpacking libclass-inspector-perl (1.36-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../071-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../072-libclass-xsaccessor-perl_1.19-4+b8_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b8) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../073-libclone-perl_0.50-1+b2_arm64.deb ... Unpacking libclone-perl:arm64 (0.50-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../074-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-someutil-perl. Preparing to unpack .../075-libparams-someutil-perl_1.11-1_arm64.deb ... Unpacking libparams-someutil-perl (1.11-1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../076-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../077-libdata-optlist-perl_0.115-1_all.deb ... Unpacking libdata-optlist-perl (0.115-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../078-libparams-util-perl_1.102-3+b3_arm64.deb ... Unpacking libparams-util-perl (1.102-3+b3) ... Selecting previously unselected package libsub-exporter-perl. 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Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../090-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../091-libnet-netmask-perl_2.0003-1_all.deb ... Unpacking libnet-netmask-perl (2.0003-1) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../092-libnetaddr-ip-perl_4.079+dfsg-2+b7_arm64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b7) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../093-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../094-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../095-libdevel-size-perl_0.87-1+b1_arm64.deb ... Unpacking libdevel-size-perl (0.87-1+b1) ... Selecting previously unselected package libdistro-info-perl. Preparing to unpack .../096-libdistro-info-perl_1.17_all.deb ... Unpacking libdistro-info-perl (1.17) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../097-libemail-address-xs-perl_1.05-1+b6_arm64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b6) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../098-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../099-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../100-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../101-libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../102-libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../103-libfile-find-rule-perl_0.35-1_all.deb ... Unpacking libfile-find-rule-perl (0.35-1) ... Selecting previously unselected package libfile-libmagic-perl. Preparing to unpack .../104-libfile-libmagic-perl_1.23-2+b4_arm64.deb ... Unpacking libfile-libmagic-perl (1.23-2+b4) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../105-libtimedate-perl_2.3500-1_all.deb ... Unpacking libtimedate-perl (2.3500-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../106-libhttp-date-perl_6.08-1_all.deb ... Unpacking libhttp-date-perl (6.08-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../107-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libfile-sharedir-perl. Preparing to unpack .../108-libfile-sharedir-perl_1.118-3_all.deb ... Unpacking libfile-sharedir-perl (1.118-3) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../109-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../110-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../111-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../112-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../113-libhttp-message-perl_7.04-1_all.deb ... Unpacking libhttp-message-perl (7.04-1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../114-libhtml-form-perl_6.13-1_all.deb ... Unpacking libhtml-form-perl (6.13-1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../115-libhtml-html5-entities-perl_0.004-3_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../116-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../117-libhttp-cookies-perl_6.12-2_all.deb ... Unpacking libhttp-cookies-perl (6.12-2) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../118-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:arm64. Preparing to unpack .../119-perl-openssl-defaults_7+b2_arm64.deb ... Unpacking perl-openssl-defaults:arm64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:arm64. Preparing to unpack .../120-libnet-ssleay-perl_1.96-2_arm64.deb ... Unpacking libnet-ssleay-perl:arm64 (1.96-2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../121-libio-socket-ssl-perl_2.099-1_all.deb ... Unpacking libio-socket-ssl-perl (2.099-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../122-libnet-http-perl_6.24-1_all.deb ... Unpacking libnet-http-perl (6.24-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../123-liblwp-protocol-https-perl_6.15-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.15-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../124-libwww-robotrules-perl_6.03-1_all.deb ... Unpacking libwww-robotrules-perl (6.03-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../125-libwww-perl_6.83-1_all.deb ... Unpacking libwww-perl (6.83-1) ... Selecting previously unselected package libhtml-tokeparser-simple-perl. Preparing to unpack .../126-libhtml-tokeparser-simple-perl_3.16-4_all.deb ... Unpacking libhtml-tokeparser-simple-perl (3.16-4) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../127-libimport-into-perl_1.002005-2_all.deb ... Unpacking libimport-into-perl (1.002005-2) ... 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Setting up plzip (1.13-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:arm64 (0.04-12+b1) ... Setting up libnpth0t64:arm64 (1.8-4) ... Setting up libkeyutils1:arm64 (1.6.3-6+b2) ... Setting up libunicode-utf8-perl (0.75-1+b1) ... Setting up libmouse-perl:arm64 (2.6.2-1+b1) ... Setting up libgpg-error0:arm64 (1.61-5) ... Setting up libdata-messagepack-perl (1.02-3+b2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.50-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4+b1) ... Setting up distro-info-data (2026.08.20-1) ... Setting up libcpanel-json-xs-perl:arm64 (4.51-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.87-1+b1) ... Setting up unzip (6.0-31) ... Setting up libbrotli1:arm64 (1.2.0-4+b1) ... Setting up libsqlite3-0:arm64 (3.53.4-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.910.0+ds-1+b1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:arm64 (1.70.0-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:arm64 (1.12.3-2) ... Setting up liblzo2-2:arm64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:arm64 (2.3.8-5) ... Setting up libcom-err2:arm64 (1.47.4-1+b1) ... Setting up libparams-someutil-perl (1.11-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.006+ds-1+b1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:arm64 (0.9.4-1) ... Setting up libkrb5support0:arm64 (1.22.1-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-11) ... Setting up patchutils (0.4.5-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b7) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libproc2-1:arm64 (2:4.0.7-1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b5) ... Setting up t1utils (1.41-4+b2) ... Setting up diffstat (1.69-1) ... Setting up libvariable-magic-perl (0.65-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libdata-optlist-perl (0.115-1) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b5) ... Setting up libfile-libmagic-perl (1.23-2+b4) ... Setting up libncursesw6:arm64 (6.6+20260608-2) ... Setting up libk5crypto3:arm64 (1.22.1-3) ... Setting up libparams-util-perl (1.102-3+b3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-11) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2+b3) ... Setting up libnghttp3-9:arm64 (1.17.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3500-1) ... Setting up libsub-name-perl:arm64 (0.28-1+b3) ... Setting up libffi8:arm64 (3.8.0-2) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:arm64 (0.637-1+b4) ... Setting up libpath-tiny-perl (0.150-1) ... Setting up lzop (1.04-2+b2) ... Setting up libassuan9:arm64 (3.0.2-2+b2) ... Setting up procps (2:4.0.7-1) ... Setting up librole-tiny-perl (2.002005-1) ... Setting up libtasn1-6:arm64 (4.21.0-2+b1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:arm64 (1.24.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b8) ... Setting up libkrb5-3:arm64 (1.22.1-3) ... Setting up libstemmer0d:arm64 (3.1.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:arm64 (1.11.1-6) ... Setting up libterm-readkey-perl (2.38-2+b6) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.6.4-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b6) ... Setting up libperlio-gzip-perl (0.20-1+b6) ... Setting up readline-common (8.3-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.006+ds-1+b1) ... Setting up libmarkdown2:arm64 (2.2.7-2.1+b2) ... Setting up libldap2:arm64 (2.6.14+dfsg-2) ... Setting up liburi-perl (5.37-1) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libsub-exporter-perl (0.990-1.1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b6) ... Setting up libnet-ssleay-perl:arm64 (1.96-2) ... Setting up libksba8:arm64 (1.8.1-1) ... Setting up libhttp-date-perl (6.08-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libdistro-info-perl (1.17) ... Setting up libpsl5t64:arm64 (0.23.3-1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-3+b1) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.90.0-1) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1+b1) ... Setting up shared-mime-info (2.4-5+b4) ... Setting up libp11-kit0:arm64 (0.26.5-1) ... Setting up libgssapi-krb5-2:arm64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up libreadline8t64:arm64 (8.3-4) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libsyntax-keyword-try-perl (0.31-1+b1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhtml-parser-perl:arm64 (3.83-2+b2) ... Setting up gpgconf (2.4.9-7+b1) ... Setting up libio-socket-ssl-perl (2.099-1) ... Setting up gpg (2.4.9-7+b1) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libgnutls30t64:arm64 (3.8.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.12-2) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:arm64 (0.3.29-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b7) ... Setting up libcgi-pm-perl (4.72-1) ... Setting up libxml-sax-perl (1.02+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.24.0-1) ... Setting up libcurl4-gnutls:arm64 (8.23.0~rc1-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:arm64 (1.2.0-2) ... Setting up liblist-someutils-xs-perl:arm64 (0.59-1+b1) ... Setting up appstream (1.2.0-2) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.15-1) ... Setting up libwww-perl (6.83-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.22-1) ... Setting up lintian (2.141.0) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... Processing triggers for man-db (2.13.1-1+b1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build Fri, 25 Sep 2026 05:01:14 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 25 Sep 2026 05:01:14 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 25 Sep 2026 05:01:18 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 314 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 55 Job: disulfinder_1.2.11-13 Lintian: pass Machine Architecture: arm64 Package: disulfinder Package-Time: 415 Source-Version: 1.2.11-13 Space: n/a Status: successful Version: 1.2.11-13 -------------------------------------------------------------------------------- Finished at 2026-09-25T05:00:02Z Build needed 00:06:55, no disk space