sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | disulfinder 1.2.11-8 (armel) Sat, 12 Oct 2019 22:14:05 +0000 | +==============================================================================+ Package: disulfinder Version: 1.2.11-8 Source Version: 1.2.11-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-89100aa0-421d-424e-b7b6-43094bd10a50' with '<>' I: NOTICE: Log filtering will replace 'build/disulfinder-iaNwsi/resolver-rHVNRa' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-12-0814.49.pdiff [3431 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-12-1416.02.pdiff [9121 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-12-2013.57.pdiff [12.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-12-2013.57.pdiff [12.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-12-0814.49.pdiff [2318 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-12-1416.02.pdiff [7204 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-12-2013.57.pdiff [20.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-12-2013.57.pdiff [20.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armel Packages [7904 kB] Fetched 8154 kB in 2s (4443 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'disulfinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/disulfinder.git Please use: git clone https://salsa.debian.org/med-team/disulfinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2490 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main disulfinder 1.2.11-8 (dsc) [2180 B] Get:2 http://debian.oregonstate.edu/debian unstable/main disulfinder 1.2.11-8 (tar) [2481 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main disulfinder 1.2.11-8 (diff) [7588 B] Fetched 2490 kB in 0s (56.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/disulfinder-iaNwsi/disulfinder-1.2.11' with '<>' I: NOTICE: Log filtering will replace 'build/disulfinder-iaNwsi' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libboost-dev, libboost-graph-dev, libf2c2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper (>= 11~), libboost-dev, libboost-graph-dev, libf2c2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [418 B] Get:5 copy:/<>/apt_archive ./ Packages [505 B] Fetched 1880 B in 0s (97.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libboost-chrono1.67.0:armel libboost-dev:armel libboost-graph-dev:armel libboost-graph1.67-dev:armel libboost-graph1.67.0:armel libboost-regex1.67.0:armel libboost-serialization1.67-dev:armel libboost-serialization1.67.0:armel libboost-system1.67.0:armel libboost-test1.67-dev:armel libboost-test1.67.0:armel libboost-timer1.67.0:armel libboost1.67-dev:armel libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libf2c2:armel libf2c2-dev:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libicu63:armel libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:armel graphviz:armel libboost1.67-doc:armel libboost-atomic1.67-dev:armel libboost-chrono1.67-dev:armel libboost-container1.67-dev:armel libboost-context1.67-dev:armel libboost-coroutine1.67-dev:armel libboost-date-time1.67-dev:armel libboost-exception1.67-dev:armel libboost-fiber1.67-dev:armel libboost-filesystem1.67-dev:armel libboost-graph-parallel1.67-dev:armel libboost-iostreams1.67-dev:armel libboost-locale1.67-dev:armel libboost-log1.67-dev:armel libboost-math1.67-dev:armel libboost-mpi1.67-dev:armel libboost-mpi-python1.67-dev:armel libboost-numpy1.67-dev:armel libboost-program-options1.67-dev:armel libboost-python1.67-dev:armel libboost-random1.67-dev:armel libboost-regex1.67-dev:armel libboost-signals1.67-dev:armel libboost-stacktrace1.67-dev:armel libboost-system1.67-dev:armel libboost-thread1.67-dev:armel libboost-timer1.67-dev:armel libboost-type-erasure1.67-dev:armel libboost-wave1.67-dev:armel libboost1.67-tools-dev:armel libmpfrc++-dev:armel libntl-dev:armel glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libboost-chrono1.67.0:armel libboost-dev:armel libboost-graph-dev:armel libboost-graph1.67-dev:armel libboost-graph1.67.0:armel libboost-regex1.67.0:armel libboost-serialization1.67-dev:armel libboost-serialization1.67.0:armel libboost-system1.67.0:armel libboost-test1.67-dev:armel libboost-test1.67.0:armel libboost-timer1.67.0:armel libboost1.67-dev:armel libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libf2c2:armel libf2c2-dev:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libicu63:armel libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armel sensible-utils ucf 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 81.9 MB of archives. After this operation, 437 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b5 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-9 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.33-2 [2722 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-8cross1 [193 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-8cross1 [6809 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-1cross7 [1139 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-8cross1 [39.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-8cross1 [74.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-8cross1 [8932 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-8cross1 [340 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-8cross1 [376 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-8cross1 [110 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-8cross1 [640 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-8cross1 [7143 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.2.9-2cross7 [1312 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-1cross7 [2155 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-8cross1 [1705 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-8cross1 [7387 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.6.1 [172 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.1-1 [1317 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.6.1 [993 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-9 [39.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-2 [2349 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-9 [347 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-9 [9092 B] Get:79 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-9 [414 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armel libboost-system1.67.0 armel 1.67.0-13 [229 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libboost-chrono1.67.0 armel 1.67.0-13 [231 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-9 [77.1 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-9 [111 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-9 [641 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.2.17-1+b1 [1232 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-2 [2196 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-9 [1737 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libboost1.67-dev armel 1.67.0-13 [8386 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libboost-dev armel 1.67.0.2 [4184 B] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libicu63 armel 63.2-2 [7979 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libboost-regex1.67.0 armel 1.67.0-13 [431 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libboost-graph1.67.0 armel 1.67.0-13 [298 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libboost-serialization1.67.0 armel 1.67.0-13 [301 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel libboost-serialization1.67-dev armel 1.67.0-13 [370 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel libboost-timer1.67.0 armel 1.67.0-13 [229 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libboost-test1.67.0 armel 1.67.0-13 [421 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libboost-test1.67-dev armel 1.67.0-13 [510 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libboost-graph1.67-dev armel 1.67.0-13 [325 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libboost-graph-dev armel 1.67.0.2 [4080 B] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libf2c2 armel 20130926-3 [112 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libf2c2-dev armel 20130926-3 [119 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.9 MB in 1s (61.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14991 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... 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Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up cpp-9-arm-linux-gnueabi (9.2.1-8cross1) ... Setting up autopoint (0.19.8.1-9) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up libc6-armel-cross (2.29-1cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev-armel-cross (2.29-1cross7) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b5) ... Setting up gcc-9-base:armel (9.2.1-9) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up libgomp1-armel-cross (9.2.1-8cross1) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-2) ... Setting up libatomic1-armel-cross (9.2.1-8cross1) ... Setting up libgcc1-armel-cross (1:9.2.1-8cross1) ... Setting up libasan5-armel-cross (9.2.1-8cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libstdc++6-armel-cross (9.2.1-8cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libubsan1-armel-cross (9.2.1-8cross1) ... Setting up libgcc-9-dev-armel-cross (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-armel-cross (9.2.1-8cross1) ... Setting up gcc-9-arm-linux-gnueabi (9.2.1-8cross1) ... Setting up g++-9-arm-linux-gnueabi (9.2.1-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up dh-autoreconf (19) ... Setting up libc6:armel (2.29-2) ... Setting up libc6-dev:armel (2.29-2) ... Setting up libf2c2:armel (20130926-3) ... Setting up libf2c2-dev:armel (20130926-3) ... Setting up libgcc1:armel (1:9.2.1-9) ... Setting up debhelper (12.6.1) ... Setting up libgomp1:armel (9.2.1-9) ... Setting up libasan5:armel (9.2.1-9) ... Setting up libatomic1:armel (9.2.1-9) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up libstdc++6:armel (9.2.1-9) ... Setting up libicu63:armel (63.2-2) ... Setting up libubsan1:armel (9.2.1-9) ... Setting up libboost-system1.67.0:armel (1.67.0-13) ... Setting up libboost-serialization1.67.0:armel (1.67.0-13) ... Setting up libboost-regex1.67.0:armel (1.67.0-13) ... Setting up libboost-chrono1.67.0:armel (1.67.0-13) ... Setting up libboost-graph1.67.0:armel (1.67.0-13) ... Setting up libgcc-9-dev:armel (9.2.1-9) ... Setting up libboost-timer1.67.0:armel (1.67.0-13) ... Setting up libstdc++-9-dev:armel (9.2.1-9) ... Setting up libboost-test1.67.0:armel (1.67.0-13) ... Setting up libboost1.67-dev:armel (1.67.0-13) ... Setting up libboost-serialization1.67-dev:armel (1.67.0-13) ... Setting up libboost-test1.67-dev:armel (1.67.0-13) ... Setting up libboost-graph1.67-dev:armel (1.67.0-13) ... Setting up libboost-dev:armel (1.67.0.2) ... Setting up libboost-graph-dev:armel (1.67.0.2) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33-2 dpkg-dev_1.19.7 g++-8_8.3.0-23 g++-9_9.2.1-9 gcc-8_8.3.0-23 gcc-9_9.2.1-9 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-9 libstdc++-9-dev-armel-cross_9.2.1-8cross1 libstdc++6_9.2.1-9 libstdc++6-armel-cross_9.2.1-8cross1 linux-libc-dev_5.2.17-1+b1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.33-2 binutils-arm-linux-gnueabi_2.33-2 binutils-common_2.33-2 binutils-x86-64-linux-gnu_2.33-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-23 cpp-9_9.2.1-9 cpp-9-arm-linux-gnueabi_9.2.1-8cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-23 g++-9_9.2.1-9 g++-9-arm-linux-gnueabi_9.2.1-8cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-23 gcc-8-base_8.3.0-23 gcc-9_9.2.1-9 gcc-9-arm-linux-gnueabi_9.2.1-8cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-8cross1 gcc-9-base_9.2.1-9 gcc-9-cross-base_9.2.1-8cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-9 libasan5-armel-cross_9.2.1-8cross1 libatomic1_9.2.1-9 libatomic1-armel-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33-2 libblkid1_2.34-0.1 libboost-chrono1.67.0_1.67.0-13 libboost-dev_1.67.0.2 libboost-graph-dev_1.67.0.2 libboost-graph1.67-dev_1.67.0-13 libboost-graph1.67.0_1.67.0-13 libboost-regex1.67.0_1.67.0-13 libboost-serialization1.67-dev_1.67.0-13 libboost-serialization1.67.0_1.67.0-13 libboost-system1.67.0_1.67.0-13 libboost-test1.67-dev_1.67.0-13 libboost-test1.67.0_1.67.0-13 libboost-timer1.67.0_1.67.0-13 libboost1.67-dev_1.67.0-13 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: disulfinder Binary: disulfinder, disulfinder-data Architecture: any all Version: 1.2.11-8 Maintainer: Debian Med Packaging Team Uploaders: Guy Yachdav , Laszlo Kajan , Andreas Tille Homepage: http://disulfind.dsi.unifi.it/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/disulfinder Vcs-Git: https://salsa.debian.org/med-team/disulfinder.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libboost-dev, libboost-graph-dev, libf2c2-dev Package-List: disulfinder deb science optional arch=any disulfinder-data deb science optional arch=all Checksums-Sha1: 275abbe8b4ac8e7f83d8a38c81c7f75c0ec7481e 2480613 disulfinder_1.2.11.orig.tar.gz 6f1b8adf28a7f68eb9ab1017d404cc8ff219000b 7588 disulfinder_1.2.11-8.debian.tar.xz Checksums-Sha256: d653aaac3ea26e9f6106a371de4f43d05b781a8b8b690c97820e4b27ea9d3495 2480613 disulfinder_1.2.11.orig.tar.gz 8a101f70997f8df0fcf75ae44be28548ffed2128ead3ad7cc9b60655f8b8630d 7588 disulfinder_1.2.11-8.debian.tar.xz Files: a4f0ed137b56fc0674a207351b659eba 2480613 disulfinder_1.2.11.orig.tar.gz c28edeb4b97d4c55fcc1e4b94796db9b 7588 disulfinder_1.2.11-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAluntPgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGNlg//d8PAW3d5XTdQVkWgT3Z9Q6jOJ72yU8hn XPmnFWXI60NfpaBpfUi/JjxyY0FxpAJme5S0+A4Dbj/luqKetvQNMdglf5W53n6V DrEh3OQvVI92PBm/d2cvxk7PrLDUsQZiRFj4djGVMxltgH2HusCklHTR91svF2A2 GT91vG3Vf/1DKTMaSUoWCl9WqhCJorNkZ/n2vRMfsmqANkb1vFoVlLGYJAh0mxqI FU94cJPipfS5exfINcsjUJVxL6mUAwC0ea7s4cWEhX3K5+nIhVAhBayc/Vc+mGO1 xL9mHoHCbTotAVsGo8hD6enZNN05jHvVxkpF3VOXyniS3+U4SPCdIUqzhbfycDi8 jLC84az+dXL/x+ipygLe2Ikx0T+myP9N3zWHCviVR+GsYKnsQFijGDoJFO15KmDj Fsemx1UAo2x/JgScSc2vMJfavWyuB4evw2+hSu2I9p48cKQQiFNDROfTv3zJKICm A4AQ/a/RP2InZNlJzai//Ya94ebLhcExaf+FhfTLwYw4y64Je5gEc2YDeWP5LWVM nzkkeuXcyMD4M6/YewREOug95pzr60VVtmFW34h1diO/4muEOf4XAPAirHDSiehM fxE3xu1WncrnNn1+qPuEpMpgXTXuc6mP7OaMHCsd3bLDAkltU6kT5AJRcb6VSa/j +d9te5pex8U= =/H2a -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Sep 23 15:44:56 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./disulfinder_1.2.11-8.dsc dpkg-source: info: extracting disulfinder in /<> dpkg-source: info: unpacking disulfinder_1.2.11.orig.tar.gz dpkg-source: info: unpacking disulfinder_1.2.11-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying variable_length_array dpkg-source: info: applying unknown_escape dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying gcc-7.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-89100aa0-421d-424e-b7b6-43094bd10a50 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package disulfinder dpkg-buildpackage: info: source version 1.2.11-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean dh_auto_clean make -j1 distclean make[1]: Entering directory '/<>' if [ -e "disulfind/src/Makefile" ]; then make -C disulfind/src clean; fi make[2]: Entering directory '/<>/disulfind/src' make -C NN clean make[3]: Entering directory '/<>/disulfind/src/NN' rm -f *~ *.o brnn-train brnn-test make[3]: Leaving directory '/<>/disulfind/src/NN' make -C Common clean make[3]: Entering directory '/<>/disulfind/src/Common' make -C eig clean make[4]: Entering directory '/<>/disulfind/src/Common/eig' rm *.o libeig.a *~ -f make[4]: Leaving directory '/<>/disulfind/src/Common/eig' rm *.o libCommon.a Eig Norm *~ -f make[3]: Leaving directory '/<>/disulfind/src/Common' make -C SVM clean make[3]: Entering directory '/<>/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/<>/disulfind/src/SVM' cd SVM && make clean make[3]: Entering directory '/<>/disulfind/src/SVM' rm *~ *.o *.a *.exe SVMClassifier -f make[3]: Leaving directory '/<>/disulfind/src/SVM' cd Input && make clean make[3]: Entering directory '/<>/disulfind/src/Input' rm *.o makeWindow makeSparseVector globalDescriptor createKernelDataset createBRNNDataset buildXfolds *~ -f make[3]: Leaving directory '/<>/disulfind/src/Input' cd Output && make clean make[3]: Entering directory '/<>/disulfind/src/Output' rm *.o makeASCIIOutput makeHTMLOutput *~ -f make[3]: Leaving directory '/<>/disulfind/src/Output' cd FSA-Alignment && make clean make[3]: Entering directory '/<>/disulfind/src/FSA-Alignment' rm *.o fold_automata viterbi_aligner timed_transitions *~ -f make[3]: Leaving directory '/<>/disulfind/src/FSA-Alignment' cd BRNN && make clean make[3]: Entering directory '/<>/disulfind/src/BRNN' rm -f *.o core rm -f ./RNNs/*.o ./RNNs/core disulfind-conn make[3]: Leaving directory '/<>/disulfind/src/BRNN' rm disulfinder disultrainer *.o *~ -f make[2]: Leaving directory '/<>/disulfind/src' rm -f *.[12345678] *.[12345678].gz #if [ -d "disulfind" ]; then rm -rf disulfind; fi if [ -d "disulfinder-1.2.11" ]; then rm -rf "disulfinder-1.2.11"; fi rm -rf patch-stamp \ initial-clean-stamp \ "disulfinder-1.2.11.tar.gz" \ .pc make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/disulfinder.substvars debian/disulfinder-data.substvars debian/files rm -fr -- debian/disulfinder/ debian/tmp/ debian/disulfinder-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc make[2]: Entering directory '/<>' make -C disulfind/src disulfinder make[3]: Entering directory '/<>/disulfind/src' arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/GlobalDescriptor.cpp -o Input/GlobalDescriptor.o In file included from Input/utils.h:2, from Input/GlobalDescriptor.cpp:3: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createBRNNDataset.cpp -o Input/createBRNNDataset.o In file included from Input/utils.h:2, from Input/createBRNNDataset.h:1, from Input/createBRNNDataset.cpp:2: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/createKernelDataset.cpp -o Input/createKernelDataset.o In file included from Input/utils.h:2, from Input/createKernelDataset.h:1, from Input/createKernelDataset.cpp:2: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeWindow.cpp -o Input/makeWindow.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/makeSparseVector.cpp -o Input/makeSparseVector.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from Input/../Common/Util.h:7, from Input/Protein.cpp:11: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/map:60, from Input/Protein.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from Input/../Common/Util.h:7, from Input/Protein.cpp:11: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In static member function ‘static void Protein::AddDescriptors(std::vector&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from Input/../Common/Util.h:7, from Input/Protein.cpp:11: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void Protein::ReadPsiBlast2(std::istream&, double)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from Input/../Common/Util.h:7, from Input/Protein.cpp:11: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void Protein::ReadPsiBlast0(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from Input/../Common/Util.h:7, from Input/Protein.cpp:11: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void Protein::ReadTDB(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from Input/../Common/Util.h:7, from Input/Protein.cpp:11: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void Protein::ReadStride(std::istream&, char)’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Input/buildXfolds.cpp -o Input/buildXfolds.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c SVM/SVMClassifier.cpp -o SVM/SVMClassifier.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeHTMLOutput.cpp -o Output/makeHTMLOutput.o Output/makeHTMLOutput.cpp: In function ‘void makeHTMLOutput(std::string, const char*, int, std::string, std::ostream&)’: Output/makeHTMLOutput.cpp:162:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~~ Output/makeHTMLOutput.cpp:162:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 162 | char * altname[2] = {"Second","Third"}; | ^~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/utils.cpp -o Output/utils.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c Output/makeASCIIOutput.cpp -o Output/makeASCIIOutput.o Output/makeASCIIOutput.cpp: In function ‘void makeASCIIOutput(std::string, const char*, int, std::string, std::ostream&)’: Output/makeASCIIOutput.cpp:144:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~~ Output/makeASCIIOutput.cpp:144:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 144 | char * altname[2] = {"SECOND","THIRD"}; | ^~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/fsa.cpp -o FSA-Alignment/fsa.o In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from FSA-Alignment/fsa.h:3, from FSA-Alignment/fsa.cpp:1: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Transition}; _Tp = Transition; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void FiniteStateAutomata::Read(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c FSA-Alignment/viterbi_aligner.cpp -o FSA-Alignment/viterbi_aligner.o In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from FSA-Alignment/../Common/Matrix.h:8, from FSA-Alignment/../Common/CommonMethods.h:15, from FSA-Alignment/viterbi_aligner.h:2, from FSA-Alignment/viterbi_aligner.cpp:3: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from FSA-Alignment/../Common/Matrix.h:8, from FSA-Alignment/../Common/CommonMethods.h:15, from FSA-Alignment/viterbi_aligner.h:2, from FSA-Alignment/viterbi_aligner.cpp:3: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void Matrix::Read(std::istream&) [with DATATYPE = double]’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/multi-array.cpp -o NN/multi-array.o In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from NN/multi-array.cpp:2: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from NN/multi-array.cpp:2: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In function ‘REAL* ReadArray(std::istream&, int&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/array.cpp -o NN/array.o In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from NN/array.cpp:2: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from NN/array.cpp:2: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void VECTOR::Read(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void COLLECTIONA::Read(std::istream&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-model.cpp -o NN/brnn-model.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c NN/brnn-test.cpp -o NN/brnn-test.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Node.cpp -o BRNN/RNNs/Node.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/StructureSearch.cpp -o BRNN/RNNs/StructureSearch.o arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DataSet.cpp -o BRNN/RNNs/DataSet.o In file included from BRNN/RNNs/DataSet.cpp:1: BRNN/RNNs/DataSet.h:19:1: warning: ‘typedef’ was ignored in this declaration 19 | typedef struct StructuredInstanceTemplate { | ^~~~~~~ In file included from BRNN/RNNs/DataSet.cpp:1: BRNN/RNNs/DataSet.h: In constructor ‘DataSet::iterator::iterator(DataSet&)’: BRNN/RNNs/DataSet.h:86:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 86 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h: In member function ‘bool DataSet::iterator::operator++()’: BRNN/RNNs/DataSet.h:116:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 116 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h:135:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 135 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.cpp: In constructor ‘DataSet::DataSet(const char*, const char*)’: BRNN/RNNs/DataSet.cpp:69:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 69 | if(pos == string::npos) | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.cpp: In member function ‘bool DataSet::loadInstances(const char*)’: BRNN/RNNs/DataSet.cpp:141:7: warning: unused variable ‘ng’ [-Wunused-variable] 141 | int ng = 1; | ^~ BRNN/RNNs/DataSet.cpp: At global scope: BRNN/RNNs/DataSet.cpp:14:12: warning: ‘int one(const dirent*)’ defined but not used [-Wunused-function] 14 | static int one(const struct dirent* unused) { | ^~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/DPAG.cpp -o BRNN/RNNs/DPAG.o BRNN/RNNs/DPAG.cpp: In function ‘float PRMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:48:7: warning: unused variable ‘global_predicted_positives’ [-Wunused-variable] 48 | int global_predicted_positives = boost::num_edges(g), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:49:5: warning: unused variable ‘global_actual_positives’ [-Wunused-variable] 49 | global_actual_positives = boost::num_edges(gtarget), | ^~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:52:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 52 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘float PrecisionMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:302:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 302 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘std::pair globalPRMeasure(const DPAG&, const DPAG&, int&, int&, int&, int&, int&, int&, float&)’: BRNN/RNNs/DPAG.cpp:361:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 361 | Vertex_d graphNode, targetNode, targetNode1; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘ConfusionTable getPredictionIndexes(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:560:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::vertices_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 559 | require(true_positives + true_negatives + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 | false_positives + false_negatives == | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 561 | boost::num_vertices(gpred) * (boost::num_vertices(gpred)-1) / 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:471:9: warning: unused variable ‘weight’ [-Wunused-variable] 471 | float weight = 1.0 / boost::num_vertices(gpred); | ^~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘float RecallMeasure(const DPAG&, const DPAG&, std::vector&)’: BRNN/RNNs/DPAG.cpp:573:12: warning: unused variable ‘graphNode’ [-Wunused-variable] 573 | Vertex_d graphNode, targetNode; | ^~~~~~~~~ BRNN/RNNs/DPAG.cpp: In function ‘bool equal(const DPAG&, const DPAG&)’: BRNN/RNNs/DPAG.cpp:746:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 746 | for(int i=0; i, boost::property >, boost::adjacency_list, boost::property > > dpag_to_rnndpag(const DPAG&)’: BRNN/RNNs/DPAG.cpp:832:24: warning: comparison of integer expressions of different signedness: ‘boost::vec_adj_list_vertex_id_map, unsigned int>::value_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 832 | if(vertex_id[*v_i] != n_vertices-1) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:839:22: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘boost::vec_adj_list_vertex_id_map, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 839 | if(children.front() == vertex_id[*v_i]+1) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:844:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 844 | for(int i=0; i, int>::value_type’ {aka ‘int’} and ‘boost::vec_adj_list_vertex_id_map, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 862 | if((*it).second.front() == vertex_id[*v_i]-1) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:867:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 867 | for(int i=0; i<(*it).second.size(); i++) | ~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DPAG.cpp:813:12: warning: unused variable ‘node’ [-Wunused-variable] 813 | Vertex_d node; | ^~~~ BRNN/RNNs/DPAG.cpp: In function ‘DPAG rnndpag_to_dpag(const std::pair, boost::property >, boost::adjacency_list, boost::property > >&)’: BRNN/RNNs/DPAG.cpp:878:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 878 | VertexId vertex_id = boost::get(boost::vertex_index, g);; | ^~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/RNNs/Options.cpp -o BRNN/RNNs/Options.o BRNN/RNNs/Options.cpp: In member function ‘virtual void Options::parse_config(const string&)’: BRNN/RNNs/Options.cpp:30:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 30 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:36:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 36 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:42:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 42 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:47:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 47 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:61:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 61 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:79:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 79 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:85:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 85 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:90:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 90 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:99:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 99 | if(_input_mask.size() != _input_dimension) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp: In member function ‘virtual void Options::parse_args(int, char**)’: BRNN/RNNs/Options.cpp:138:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 138 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:144:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 144 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:150:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 150 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:155:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 155 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:169:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 169 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:187:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 187 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:193:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 193 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:198:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 198 | if(pos != string::npos) { | ~~~~^~~~~~~~~~~~~~~ BRNN/RNNs/Options.cpp:207:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 207 | if(_input_mask.size() != _input_dimension) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/protein_util.cpp -o BRNN/protein_util.o In file included from BRNN/protein_util.cpp:1: BRNN/protein_util.h: In constructor ‘Residue::Residue(int, int, char, float, float, float, float, float, char)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h: In copy constructor ‘Residue::Residue(const Residue&)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:211:13: warning: ‘Residue::_bp2’ will be initialized after [-Wreorder] 211 | int _bp1, _bp2; // bridge partners | ^~~~ BRNN/protein_util.h:206:24: warning: ‘int Residue::_ssp’ [-Wreorder] 206 | int _index, _sindex, _ssp; // DSSP index, sequential index and disulfide bond partner | ^~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h: In constructor ‘SSegment::SSegment(char)’: BRNN/protein_util.h:241:16: warning: ‘SSegment::_baricentre’ will be initialized after [-Wreorder] 241 | Coordinate3D _baricentre; // baricentrum of C_alpha atoms set | ^~~~~~~~~~~ BRNN/protein_util.h:239:18: warning: ‘SSegment::Hydrophobicity SSegment::_hydr’ [-Wreorder] 239 | Hydrophobicity _hydr; // hydropatic tendency (?!) of the segment | ^~~~~ BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] 245 | SSegment(char symbol): | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/cassert:44, from BRNN/protein_util.cpp:2: BRNN/protein_util.cpp: In member function ‘void Chain::setSShydrophobicity()’: BRNN/protein_util.cpp:365:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 365 | assert(resHydrScales.size() == numResidues()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ BRNN/protein_util.cpp:380:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 380 | if(r_i >= resHydrScales.size()) r_i = resHydrScales.size()-1; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/cassert:44, from BRNN/protein_util.cpp:2: BRNN/protein_util.cpp:386:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 386 | assert(hAvg.size() == (*c_it).numResidues()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BRNN/protein_util.cpp:391:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 391 | for(int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 401 | assert(seq_pos == resHydrScales.size()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/blast_util.cpp -o BRNN/blast_util.o BRNN/blast_util.cpp: In member function ‘void PSSM::parsePsiBlastReport(const char*)’: BRNN/blast_util.cpp:34:13: warning: unused variable ‘prof’ [-Wunused-variable] 34 | Profile prof; | ^~~~ arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c BRNN/rnn_util.cpp -o BRNN/rnn_util.o In file included from BRNN/rnn_util.cpp:4: BRNN/RNNs/DataSet.h:19:1: warning: ‘typedef’ was ignored in this declaration 19 | typedef struct StructuredInstanceTemplate { | ^~~~~~~ In file included from BRNN/rnn_util.cpp:4: BRNN/RNNs/DataSet.h: In constructor ‘DataSet::iterator::iterator(DataSet&)’: BRNN/RNNs/DataSet.h:86:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 86 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h: In member function ‘bool DataSet::iterator::operator++()’: BRNN/RNNs/DataSet.h:116:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 116 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/DataSet.h:135:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 135 | require(num_nodes == (*_nodes_targets_iter).size(), | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from BRNN/rnn_util.cpp:7: BRNN/protein_util.h: In constructor ‘Residue::Residue(int, int, char, float, float, float, float, float, char)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:213:3: warning: when initialized here [-Wreorder] 213 | Residue(int index, int sindex, char symbol, float x, float y, float z, float hydr, float acc, char ssbridge): | ^~~~~~~ BRNN/protein_util.h: In copy constructor ‘Residue::Residue(const Residue&)’: BRNN/protein_util.h:209:16: warning: ‘Residue::_coord’ will be initialized after [-Wreorder] 209 | Coordinate3D _coord; // residue representative coordinates | ^~~~~~ BRNN/protein_util.h:208:9: warning: ‘float Residue::_hydr’ [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:208:16: warning: ‘Residue::_acc’ will be initialized after [-Wreorder] 208 | float _hydr, _acc; // residue hydrophobicity and acc. values | ^~~~ BRNN/protein_util.h:207:17: warning: ‘char Residue::_ssbridge’ [-Wreorder] 207 | char _symbol, _ssbridge; // one char standard amino acid symbol and ss bond indicator | ^~~~~~~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h:211:13: warning: ‘Residue::_bp2’ will be initialized after [-Wreorder] 211 | int _bp1, _bp2; // bridge partners | ^~~~ BRNN/protein_util.h:206:24: warning: ‘int Residue::_ssp’ [-Wreorder] 206 | int _index, _sindex, _ssp; // DSSP index, sequential index and disulfide bond partner | ^~~~ BRNN/protein_util.h:219:3: warning: when initialized here [-Wreorder] 219 | Residue(const Residue& r): | ^~~~~~~ BRNN/protein_util.h: In constructor ‘SSegment::SSegment(char)’: BRNN/protein_util.h:241:16: warning: ‘SSegment::_baricentre’ will be initialized after [-Wreorder] 241 | Coordinate3D _baricentre; // baricentrum of C_alpha atoms set | ^~~~~~~~~~~ BRNN/protein_util.h:239:18: warning: ‘SSegment::Hydrophobicity SSegment::_hydr’ [-Wreorder] 239 | Hydrophobicity _hydr; // hydropatic tendency (?!) of the segment | ^~~~~ BRNN/protein_util.h:245:3: warning: when initialized here [-Wreorder] 245 | SSegment(char symbol): | ^~~~~~~~ BRNN/rnn_util.cpp: In function ‘void create_connectivity_input_data(const string&, const string&, int, int, const string&)’: BRNN/rnn_util.cpp:233:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 233 | for(int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 277 | if(i >=0 && i < pssm.size()) | ~~^~~~~~~~~~~~~ BRNN/rnn_util.cpp: In function ‘void rnn_predict_disulphides(const string&, const string&, const string&, const string&, const string&, const string&, int)’: BRNN/rnn_util.cpp:359:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::edges_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 359 | require(B == boost::num_edges(candidate) && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:348:16: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 348 | VertexId vertex_id = boost::get(boost::vertex_index, candidate); | ^~~~~~~~~ BRNN/rnn_util.cpp:405:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, boost::property > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 405 | for(int j=0; j, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::edges_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 406 | require(B == boost::num_edges(bestPatterns[j]) && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:407:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen, boost::property >, boost::vecS, boost::vecS, boost::bidirectionalS, boost::property, boost::property, boost::no_property, boost::listS>::config::vertices_size_type’ {aka ‘unsigned int’} [-Wsign-compare] 407 | B == boost::num_vertices(bestPatterns[j]) / 2, | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/rnn_util.cpp:378:18: warning: unused variable ‘nodes’ [-Wunused-variable] 378 | vector *nodes = it.currenTONodes(); | ^~~~~ In file included from BRNN/rnn_util.cpp:5: BRNN/RNNs/RecursiveNN.h: In instantiation of ‘RecursiveNN::RecursiveNN(const char*) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’: BRNN/rnn_util.cpp:88:73: required from here BRNN/RNNs/RecursiveNN.h:1018:13: warning: unused variable ‘trasd’ [-Wunused-variable] 1018 | TrasdType trasd = Options::instance()->getTrasductionType(); | ^~~~~ In file included from BRNN/rnn_util.cpp:5: BRNN/RNNs/RecursiveNN.h:1026:23: warning: variable ‘indexes’ set but not used [-Wunused-but-set-variable] 1026 | std::pair indexes = Options::instance()->getLayersIndexes(); | ^~~~~~~ BRNN/RNNs/RecursiveNN.h:1047:7: warning: unused variable ‘default_precision’ [-Wunused-variable] 1047 | int default_precision = is.precision(); | ^~~~~~~~~~~~~~~~~ In file included from BRNN/rnn_util.cpp:6: BRNN/RNNs/StructureSearch.h: In instantiation of ‘std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN]’: BRNN/rnn_util.cpp:396:65: required from here BRNN/RNNs/StructureSearch.h:977:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 977 | for(int i=0; i<_nodesInputs.size(); ++i) | ~^~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/StructureSearch.h:984:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, boost::property > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 984 | for(int i=0; i::fPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/RecursiveNN.h:1356:3: required from ‘void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’ BRNN/rnn_util.cpp:99:47: required from here BRNN/RNNs/RecursiveNN.h:1390:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1390 | require(_n == toNodes[t]->_encodedInput.size(), "Error in input dim!"); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1415:38: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1415 | out_i!=out_end && edge_id[*out_i] < _v; ++out_i) { BRNN/RNNs/RecursiveNN.h:1418:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1418 | for(int i=_n + edge_id[*out_i]*_m; i<_n + _m*(edge_id[*out_i] + 1); i++) { | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1384:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 1384 | VertexId vertex_id = boost::get(boost::vertex_index, sdag); | ^~~~~~~~~ BRNN/RNNs/RecursiveNN.h: In instantiation of ‘void RecursiveNN::bPropagateInput(std::vector&, const DPAG&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/RecursiveNN.h:1359:19: required from ‘void RecursiveNN::propagateStructuredInput(std::vector&, const std::pair, boost::property >, boost::adjacency_list, boost::property > >&) [with HA_Function = TanH; OA_Function = Sigmoid; EMP = MGradientDescent]’ BRNN/rnn_util.cpp:99:47: required from here BRNN/RNNs/RecursiveNN.h:1470:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1470 | for(int t=0; t::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1471 | require(_n == toNodes[t]->_encodedInput.size(), "Error!"); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1492:38: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1492 | out_i!=out_end && edge_id[*out_i] < _v; ++out_i) { BRNN/RNNs/RecursiveNN.h:1495:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1495 | for(int i=_n + edge_id[*out_i]*_m; i<_n + _m*(edge_id[*out_i] + 1); i++) { | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BRNN/RNNs/RecursiveNN.h:1465:12: warning: variable ‘vertex_id’ set but not used [-Wunused-but-set-variable] 1465 | VertexId vertex_id = boost::get(boost::vertex_index, sdag); | ^~~~~~~~~ In file included from BRNN/rnn_util.cpp:6: BRNN/RNNs/StructureSearch.h: In instantiation of ‘float StructureSearch::RNNMeasure(const DPAG&, RNN*, std::vector&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN; DPAG = boost::adjacency_list, boost::property >]’: BRNN/RNNs/StructureSearch.h:989:11: required from ‘std::vector, boost::property > > StructureSearch::ConnectivityPatternSearch(RNN*, const std::vector, boost::property > >&, std::vector&) [with T1 = TanH; T2 = Sigmoid; T3 = MGradientDescent; RNN = RecursiveNN]’ BRNN/rnn_util.cpp:396:65: required from here BRNN/RNNs/StructureSearch.h:186:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 186 | for(int i=0; i>/disulfind/src/Common' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Vector.cpp -o Vector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Util.cpp -o Util.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c CommonMethods.cpp -o CommonMethods.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c ConfusionMatrix.cpp -o ConfusionMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Exception.cpp -o Exception.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c Statistics.cpp -o Statistics.o arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/balanc.o eig/balanc.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/balbak.o eig/balbak.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/cdiv.o eig/cdiv.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/elmhes.o eig/elmhes.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/eltran.o eig/eltran.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/hqr.o eig/hqr.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/hqr2.o eig/hqr2.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/rg.o eig/rg.c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -O3 -Wall -Wno-deprecated -c coords.cpp -o coords.o arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eig/d_sign.o eig/d_sign.c ar rvs libCommon.a Vector.o Util.o CommonMethods.o ConfusionMatrix.o Exception.o Statistics.o eig/balanc.o eig/balbak.o eig/cdiv.o eig/elmhes.o eig/eltran.o eig/hqr.o eig/hqr2.o eig/rg.o coords.o eig/d_sign.o ar: creating libCommon.a a - Vector.o a - Util.o a - CommonMethods.o a - ConfusionMatrix.o a - Exception.o a - Statistics.o a - eig/balanc.o a - eig/balbak.o a - eig/cdiv.o a - eig/elmhes.o a - eig/eltran.o a - eig/hqr.o a - eig/hqr2.o a - eig/rg.o a - coords.o a - eig/d_sign.o make[4]: Leaving directory '/<>/disulfind/src/Common' arm-linux-gnueabi-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 -Wall -Wno-deprecated -IBRNN/RNNs -c disulfinder.cpp -o disulfinder.o In file included from Input/utils.h:2, from disulfinder.cpp:8: Input/Protein.h:19:20: warning: ‘aa_three_codes’ defined but not used [-Wunused-variable] 19 | static const char *aa_three_codes[23] = { | ^~~~~~~~~~~~~~ Input/Protein.h:17:20: warning: ‘tdb_aa_codes’ defined but not used [-Wunused-variable] 17 | static const char *tdb_aa_codes = "ARNDCQEGHILKMFPSTWYVBZX"; // as ordered in tdb profile files | ^~~~~~~~~~~~ Input/Protein.h:16:20: warning: ‘aa_codes’ defined but not used [-Wunused-variable] 16 | static const char *aa_codes = "VLIMFWYGAPSTCHRKQENDBZX"; // as ordered in profile files | ^~~~~~~~ arm-linux-gnueabi-g++ -o disulfinder disulfinder.o Input/GlobalDescriptor.o Input/createBRNNDataset.o Input/createKernelDataset.o Input/makeWindow.o Input/makeSparseVector.o Input/Protein.o Input/buildXfolds.o SVM/SVMClassifier.o Output/makeHTMLOutput.o Output/utils.o Output/makeASCIIOutput.o FSA-Alignment/fsa.o FSA-Alignment/viterbi_aligner.o NN/multi-array.o NN/array.o NN/brnn-model.o NN/brnn-test.o BRNN/RNNs/Node.o BRNN/RNNs/StructureSearch.o BRNN/RNNs/DataSet.o BRNN/RNNs/DPAG.o BRNN/RNNs/Options.o BRNN/protein_util.o BRNN/blast_util.o BRNN/rnn_util.o -Wl,-z,relro -Wl,-z,now -LCommon/ -lCommon /usr/lib/gcc-cross/arm-linux-gnueabi/9/../../../../arm-linux-gnueabi/bin/ld: Common//libCommon.a: error adding symbols: file format not recognized collect2: error: ld returned 1 exit status make[3]: *** [Makefile:53: disulfinder] Error 1 make[3]: Leaving directory '/<>/disulfind/src' make[2]: *** [Makefile:24: disulfinder] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc returned exit code 2 make[1]: *** [debian/rules:16: override_dh_auto_build] Error 255 make[1]: Leaving directory '/<>' make: *** [debian/rules:13: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-10-12T22:16:10Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 41316 Build-Time: 93 Distribution: unstable Fail-Stage: build Foreign Architectures: armel Host Architecture: armel Install-Time: 21 Job: disulfinder_1.2.11-8 Machine Architecture: amd64 Package: disulfinder Package-Time: 125 Source-Version: 1.2.11-8 Space: 41316 Status: attempted Version: 1.2.11-8 -------------------------------------------------------------------------------- Finished at 2019-10-12T22:16:10Z Build needed 00:02:05, 41316k disk space