sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | dnaclust 3-6 (s390x) Tue, 26 Feb 2019 20:25:07 +0000 | +==============================================================================+ Package: dnaclust Version: 3-6 Source Version: 3-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-f792b7ad-be27-463a-ac1b-130677dc136c' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-26-0810.08.pdiff [8416 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-26-1408.30.pdiff [16.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-26-1408.30.pdiff [16.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-26-0810.08.pdiff [6805 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-26-1408.30.pdiff [9639 B] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8034 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-26-1408.30.pdiff [9639 B] Fetched 8374 kB in 2s (4859 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt coreutils debconf libapt-pkg5.0 libdb5.3 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5855 kB of archives. After this operation, 12.3 kB disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 coreutils amd64 8.30-2 [2707 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg5.0 amd64 1.8.0~rc4 [966 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 apt amd64 1.8.0~rc4 [1354 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 debconf all 1.5.71 [145 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5855 kB in 0s (49.3 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.28-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'dnaclust' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dnaclust.git Please use: git clone https://salsa.debian.org/med-team/dnaclust.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 32.4 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main dnaclust 3-6 (dsc) [1950 B] Get:2 http://debian.oregonstate.edu/debian unstable/main dnaclust 3-6 (tar) [23.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main dnaclust 3-6 (diff) [6984 B] Fetched 32.4 kB in 0s (702 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/dnaclust-gdPUt1/dnaclust-3' with '<>' I: NOTICE: Log filtering will replace 'build/dnaclust-gdPUt1' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-kVcyOK/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-kVcyOK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kVcyOK/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-kVcyOK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kVcyOK/apt_archive ./ Sources [361 B] Get:5 copy:/<>/resolver-kVcyOK/apt_archive ./ Packages [450 B] Fetched 1768 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-s390x-linux-gnu gcc-8-doc libstdc++6-8-dbg-s390x-cross gcc-8-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross libubsan1-dbg-s390x-cross libmpx2-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After this operation, 145 MB of additional disk space will be used. Get:1 copy:/<>/resolver-kVcyOK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-2 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-2 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-2 [66.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.31.1-14 [2129 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu-base amd64 8.2.0-20cross1 [190 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-s390x-linux-gnu amd64 8.2.0-20cross1 [5941 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:8.2.0-2 [16.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.2.0-20cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-4cross1 [1308 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:8.2.0-20cross1 [24.8 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 8.2.0-20cross1 [67.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 8.2.0-20cross1 [26.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 8.2.0-20cross1 [8100 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 8.2.0-20cross1 [353 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 8.2.0-20cross1 [313 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 8.2.0-20cross1 [112 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-s390x-cross all 8.2.0-20cross1 [639 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu amd64 8.2.0-20cross1 [6370 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:8.2.0-2 [1452 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 4.19.13-1cross1 [1211 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-4cross1 [2254 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-s390x-cross all 8.2.0-20cross1 [1478 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-s390x-linux-gnu amd64 8.2.0-20cross1 [6518 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:8.2.0-2 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.5 [6540 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.5 MB in 1s (67.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11913 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-2_amd64.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-s390x-linux-gnu. Preparing to unpack .../06-binutils-s390x-linux-gnu_2.31.1-14_amd64.deb ... Unpacking binutils-s390x-linux-gnu (2.31.1-14) ... Selecting previously unselected package gcc-8-s390x-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-8-s390x-linux-gnu-base_8.2.0-20cross1_amd64.deb ... Unpacking gcc-8-s390x-linux-gnu-base:amd64 (8.2.0-20cross1) ... Selecting previously unselected package cpp-8-s390x-linux-gnu. Preparing to unpack .../08-cpp-8-s390x-linux-gnu_8.2.0-20cross1_amd64.deb ... Unpacking cpp-8-s390x-linux-gnu (8.2.0-20cross1) ... Selecting previously unselected package cpp-s390x-linux-gnu. Preparing to unpack .../09-cpp-s390x-linux-gnu_4%3a8.2.0-2_amd64.deb ... Unpacking cpp-s390x-linux-gnu (4:8.2.0-2) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-2_all.deb ... Unpacking cross-config (2.6.15-2) ... Selecting previously unselected package gcc-8-cross-base. Preparing to unpack .../11-gcc-8-cross-base_8.2.0-20cross1_all.deb ... Unpacking gcc-8-cross-base (8.2.0-20cross1) ... Selecting previously unselected package libc6-s390x-cross. Preparing to unpack .../12-libc6-s390x-cross_2.28-4cross1_all.deb ... Unpacking libc6-s390x-cross (2.28-4cross1) ... Selecting previously unselected package libgcc1-s390x-cross. Preparing to unpack .../13-libgcc1-s390x-cross_1%3a8.2.0-20cross1_all.deb ... Unpacking libgcc1-s390x-cross (1:8.2.0-20cross1) ... Selecting previously unselected package libgomp1-s390x-cross. Preparing to unpack .../14-libgomp1-s390x-cross_8.2.0-20cross1_all.deb ... Unpacking libgomp1-s390x-cross (8.2.0-20cross1) ... Selecting previously unselected package libitm1-s390x-cross. Preparing to unpack .../15-libitm1-s390x-cross_8.2.0-20cross1_all.deb ... Unpacking libitm1-s390x-cross (8.2.0-20cross1) ... Selecting previously unselected package libatomic1-s390x-cross. 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Preparing to unpack .../26-g++-8-s390x-linux-gnu_8.2.0-20cross1_amd64.deb ... Unpacking g++-8-s390x-linux-gnu (8.2.0-20cross1) ... Selecting previously unselected package g++-s390x-linux-gnu. Preparing to unpack .../27-g++-s390x-linux-gnu_4%3a8.2.0-2_amd64.deb ... Unpacking g++-s390x-linux-gnu (4:8.2.0-2) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../28-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../29-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../30-libicu63_63.1-6_amd64.deb ... Unpacking libicu63:amd64 (63.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../31-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../32-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../33-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../34-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../35-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../36-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../37-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../38-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../39-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../40-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../41-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../42-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../43-crossbuild-essential-s390x_12.5_all.deb ... Unpacking crossbuild-essential-s390x (12.5) ... Selecting previously unselected package sbuild-build-depends-core-dummy:s390x. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-s390x-linux-gnu (2.31.1-14) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up gcc-8-cross-base (8.2.0-20cross1) ... Setting up libc6-s390x-cross (2.28-4cross1) ... Setting up gcc-8-s390x-linux-gnu-base:amd64 (8.2.0-20cross1) ... Setting up libatomic1-s390x-cross (8.2.0-20cross1) ... Setting up libmagic1:amd64 (1:5.35-2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-2) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up linux-libc-dev-s390x-cross (4.19.13-1cross1) ... Setting up cross-config (2.6.15-2) ... Setting up cpp-8-s390x-linux-gnu (8.2.0-20cross1) ... Setting up libitm1-s390x-cross (8.2.0-20cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-s390x-cross (2.28-4cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-s390x-cross (8.2.0-20cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc1-s390x-cross (1:8.2.0-20cross1) ... Setting up cpp-s390x-linux-gnu (4:8.2.0-2) ... Setting up libstdc++6-s390x-cross (8.2.0-20cross1) ... Setting up libasan5-s390x-cross (8.2.0-20cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-s390x-cross (8.2.0-20cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-s390x-cross (8.2.0-20cross1) ... Setting up gcc-8-s390x-linux-gnu (8.2.0-20cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-8-dev-s390x-cross (8.2.0-20cross1) ... Setting up g++-8-s390x-linux-gnu (8.2.0-20cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:8.2.0-2) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up g++-s390x-linux-gnu (4:8.2.0-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-s390x (12.5) ... Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-kVcyOK/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-kVcyOK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kVcyOK/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-kVcyOK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kVcyOK/apt_archive ./ Sources [483 B] Get:5 copy:/<>/resolver-kVcyOK/apt_archive ./ Packages [568 B] Fetched 2014 B in 0s (0 B/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:s390x 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-kVcyOK/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x. (Reading database ... 15009 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev, libboost-program-options-dev, rename Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev, libboost-program-options-dev, rename dpkg-deb: building package 'sbuild-build-depends-dnaclust-dummy' in '/<>/resolver-kVcyOK/apt_archive/sbuild-build-depends-dnaclust-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dnaclust-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-kVcyOK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kVcyOK/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-kVcyOK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kVcyOK/apt_archive ./ Sources [662 B] Get:5 copy:/<>/resolver-kVcyOK/apt_archive ./ Packages [736 B] Fetched 2361 B in 0s (0 B/s) Reading package lists... Reading package lists... Install dnaclust build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libboost-dev:s390x libboost-program-options-dev:s390x libboost-program-options1.67-dev:s390x libboost-program-options1.67.0:s390x libboost1.67-dev:s390x libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgomp1:s390x libitm1:s390x libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x libuchardet0 linux-libc-dev:s390x m4 man-db po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:s390x libboost1.67-doc:s390x libboost-atomic1.67-dev:s390x libboost-chrono1.67-dev:s390x libboost-container1.67-dev:s390x libboost-date-time1.67-dev:s390x libboost-exception1.67-dev:s390x libboost-filesystem1.67-dev:s390x libboost-graph1.67-dev:s390x libboost-graph-parallel1.67-dev:s390x libboost-iostreams1.67-dev:s390x libboost-locale1.67-dev:s390x libboost-log1.67-dev:s390x libboost-math1.67-dev:s390x libboost-mpi1.67-dev:s390x libboost-mpi-python1.67-dev:s390x libboost-numpy1.67-dev:s390x libboost-python1.67-dev:s390x libboost-random1.67-dev:s390x libboost-regex1.67-dev:s390x libboost-serialization1.67-dev:s390x libboost-signals1.67-dev:s390x libboost-stacktrace1.67-dev:s390x libboost-system1.67-dev:s390x libboost-test1.67-dev:s390x libboost-thread1.67-dev:s390x libboost-timer1.67-dev:s390x libboost-type-erasure1.67-dev:s390x libboost-wave1.67-dev:s390x libboost1.67-tools-dev:s390x libmpfrc++-dev:s390x libntl-dev:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x libstdc++-8-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:s390x libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libboost-dev:s390x libboost-program-options-dev:s390x libboost-program-options1.67-dev:s390x libboost-program-options1.67.0:s390x libboost1.67-dev:s390x libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgomp1:s390x libitm1:s390x libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x libuchardet0 linux-libc-dev:s390x m4 man-db po-debconf rename sbuild-build-depends-dnaclust-dummy:s390x 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 27.9 MB of archives. After this operation, 226 MB of additional disk space will be used. Get:1 copy:/<>/resolver-kVcyOK/apt_archive ./ sbuild-build-depends-dnaclust-dummy 0.invalid.0 [900 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.1-1 [19.7 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.1-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main s390x gcc-8-base s390x 8.2.0-21 [190 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:8.2.0-21 [24.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-7 [2503 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 8.2.0-21 [391 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 8.2.0-21 [321 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 8.2.0-21 [8192 B] Get:35 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 8.2.0-21 [68.7 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 8.2.0-21 [26.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 8.2.0-21 [113 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-8-dev s390x 8.2.0-21 [645 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 4.19.20-1 [1138 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-7 [2269 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-8-dev s390x 8.2.0-21 [1502 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main s390x libboost1.67-dev s390x 1.67.0-13 [8386 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main s390x libboost-dev s390x 1.67.0.1 [3864 B] Get:44 http://debian.oregonstate.edu/debian unstable/main s390x libboost-program-options1.67.0 s390x 1.67.0-13 [341 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main s390x libboost-program-options1.67-dev s390x 1.67.0-13 [368 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main s390x libboost-program-options-dev s390x 1.67.0.1 [3656 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 rename all 1.10-1 [17.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.9 MB in 0s (62.5 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15009 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... 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Unpacking libboost-program-options1.67.0:s390x (1.67.0-13) ... Selecting previously unselected package libboost-program-options1.67-dev:s390x. Preparing to unpack .../43-libboost-program-options1.67-dev_1.67.0-13_s390x.deb ... Unpacking libboost-program-options1.67-dev:s390x (1.67.0-13) ... Selecting previously unselected package libboost-program-options-dev:s390x. Preparing to unpack .../44-libboost-program-options-dev_1.67.0.1_s390x.deb ... Unpacking libboost-program-options-dev:s390x (1.67.0.1) ... Selecting previously unselected package rename. Preparing to unpack .../45-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) ... Selecting previously unselected package sbuild-build-depends-dnaclust-dummy:s390x. Preparing to unpack .../46-sbuild-build-depends-dnaclust-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-dnaclust-dummy:s390x (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:s390x (4.19.20-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:s390x (8.2.0-21) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:s390x (2.28-7) ... Setting up libc6-dev:s390x (2.28-7) ... Setting up libitm1:s390x (8.2.0-21) ... Setting up libgcc1:s390x (1:8.2.0-21) ... Setting up libgomp1:s390x (8.2.0-21) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:s390x (8.2.0-21) ... Setting up dh-strip-nondeterminism (1.1.1-1) ... Setting up libstdc++6:s390x (8.2.0-21) ... Setting up libboost-program-options1.67.0:s390x (1.67.0-13) ... Setting up debhelper (12.1.1) ... Setting up libasan5:s390x (8.2.0-21) ... Setting up libubsan1:s390x (8.2.0-21) ... Setting up libgcc-8-dev:s390x (8.2.0-21) ... Setting up libstdc++-8-dev:s390x (8.2.0-21) ... Setting up libboost1.67-dev:s390x (1.67.0-13) ... Setting up libboost-program-options1.67-dev:s390x (1.67.0-13) ... Setting up libboost-program-options-dev:s390x (1.67.0.1) ... Setting up libboost-dev:s390x (1.67.0.1) ... Setting up sbuild-build-depends-dnaclust-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-7) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-14 dpkg-dev_1.19.5 g++-8_8.2.0-21 gcc-8_8.2.0-21 libc6-dev_2.28-7 libstdc++-8-dev_8.2.0-21 libstdc++-8-dev-s390x-cross_8.2.0-20cross1 libstdc++6_8.2.0-21 libstdc++6-s390x-cross_8.2.0-20cross1 linux-libc-dev_4.19.20-1 Package versions: adduser_3.118 apt_1.8.0~rc4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-14 binutils-common_2.31.1-14 binutils-s390x-linux-gnu_2.31.1-14 binutils-x86-64-linux-gnu_2.31.1-14 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 coreutils_8.30-2 cpp_4:8.2.0-2 cpp-8_8.2.0-21 cpp-8-s390x-linux-gnu_8.2.0-20cross1 cpp-s390x-linux-gnu_4:8.2.0-2 cross-config_2.6.15-2 crossbuild-essential-s390x_12.5 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.7-2 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190209-2 g++_4:8.2.0-2 g++-8_8.2.0-21 g++-8-s390x-linux-gnu_8.2.0-20cross1 g++-s390x-linux-gnu_4:8.2.0-2 gcc_4:8.2.0-2 gcc-8_8.2.0-21 gcc-8-base_8.2.0-21 gcc-8-cross-base_8.2.0-20cross1 gcc-8-s390x-linux-gnu_8.2.0-20cross1 gcc-8-s390x-linux-gnu-base_8.2.0-20cross1 gcc-s390x-linux-gnu_4:8.2.0-2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-5 libapt-pkg5.0_1.8.0~rc4 libarchive-zip-perl_1.64-1 libasan5_8.2.0-21 libasan5-s390x-cross_8.2.0-20cross1 libatomic1_8.2.0-21 libatomic1-s390x-cross_8.2.0-20cross1 libattr1_1:2.4.47-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-14 libblkid1_2.33.1-0.1 libboost-dev_1.67.0.1 libboost-program-options-dev_1.67.0.1 libboost-program-options1.67-dev_1.67.0-13 libboost-program-options1.67.0_1.67.0-13 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-7 libc-dev-bin_2.28-7 libc6_2.28-7 libc6-dev_2.28-7 libc6-dev-s390x-cross_2.28-4cross1 libc6-s390x-cross_2.28-4cross1 libcap-ng0_0.7.9-2 libcc1-0_8.2.0-21 libcom-err2_1.44.5-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.247 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libelf1_0.176-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.1-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.2.0-21 libgcc-8-dev-s390x-cross_8.2.0-20cross1 libgcc1_1:8.2.0-21 libgcc1-s390x-cross_1:8.2.0-20cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-3 libgdbm6_1.18.1-3 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.2.0-21 libgomp1-s390x-cross_8.2.0-20cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.2.0-21 libitm1-s390x-cross_8.2.0-20cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.2.0-21 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.2.0-21 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libquadmath0_8.2.0-21 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.44.5-1 libstdc++-8-dev_8.2.0-21 libstdc++-8-dev-s390x-cross_8.2.0-20cross1 libstdc++6_8.2.0-21 libstdc++6-s390x-cross_8.2.0-20cross1 libsystemd0_241-1 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.2.0-21 libubsan1_8.2.0-21 libubsan1-s390x-cross_8.2.0-20cross1 libuchardet0_0.0.6-3 libudev1_241-1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.20-1 linux-libc-dev-s390x-cross_4.19.13-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 po-debconf_1.0.21 rename_1.10-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dnaclust-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 4 13:05:27 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dnaclust_3-6.dsc dpkg-source: info: extracting dnaclust in /<> dpkg-source: info: unpacking dnaclust_3.orig.tar.gz dpkg-source: info: unpacking dnaclust_3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_shel_path.patch dpkg-source: info: applying do_not_staically_linking.patch dpkg-source: info: applying resolve_name_space_conflict_fastasort.patch dpkg-source: info: applying build_with_gcc6.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-f792b7ad-be27-463a-ac1b-130677dc136c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dnaclust dpkg-buildpackage: info: source version 3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f dnaclust.o dnaclust fasta.o fastaselect.o fastaselect fastasort fastasort.o make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[1]: Entering directory '/<>' s390x-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 dnaclust.cpp dnaclust.cpp: In function 'void makeCluster()': dnaclust.cpp:1337:12: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] size_t num_threads_to_use = num_threads; ^~~~~~~~~~~~~~~~~~ dnaclust.cpp:1443:11: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] int num_threads_to_use = num_threads; ^~~~~~~~~~~~~~~~~~ dnaclust.cpp: In function 'int main(int, char**)': dnaclust.cpp:1945:11: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] int num_threads_to_use = num_threads; ^~~~~~~~~~~~~~~~~~ dnaclust.cpp:2135:14: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] size_t num_threads_to_use = num_threads; ^~~~~~~~~~~~~~~~~~ s390x-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 fasta.cpp s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now dnaclust.o fasta.o -lboost_program_options -o dnaclust -lpthread s390x-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 fastaselect.cpp s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now fastaselect.o fasta.o -lboost_program_options -o fastaselect s390x-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 fastasort.cpp -o fastasort.o s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now fastasort.o fasta.o -lboost_program_options -o fastasort make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install prename 's/\.sh//' /<>/debian/dnaclust/usr/bin/* make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'dnaclust' in '../dnaclust_3-6_s390x.deb'. dpkg-deb: building package 'dnaclust-dbgsym' in '../dnaclust-dbgsym_3-6_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../dnaclust_3-6_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-02-26T20:26:07Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-kVcyOK/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dnaclust-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-kVcyOK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kVcyOK/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-kVcyOK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kVcyOK/apt_archive ./ Sources [785 B] Get:5 copy:/<>/resolver-kVcyOK/apt_archive ./ Packages [852 B] Fetched 2600 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:s390x t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7769 kB of archives. After this operation, 20.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-kVcyOK/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.12-1 [509 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-1 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.12-1 [862 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.9.1 [1193 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7769 kB in 0s (49.5 MB/s) Selecting previously unselected package netbase. (Reading database ... 32262 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.12-1_amd64.deb ... Unpacking gpgconf (2.2.12-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.27.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-1) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.12-1_amd64.deb ... Unpacking gpg (2.2.12-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../09-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../10-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../11-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. 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Selecting previously unselected package libtimedate-perl. Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../19-libssl1.1_1.1.1a-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1a-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../20-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../21-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../22-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../23-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../24-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../25-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../26-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../27-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../28-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../29-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../30-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../31-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../32-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../33-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../34-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../35-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../36-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../37-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../38-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../39-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../40-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../41-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../42-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../43-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.76+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../44-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../45-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../46-lintian_2.9.1_all.deb ... Unpacking lintian (2.9.1) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:s390x. Preparing to unpack .../47-sbuild-build-depends-lintian-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libssl1.1:amd64 (1.1.1a-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.27.2-1) ... Setting up libfuture-perl (0.39-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (7.0-5) ... Setting up liburi-perl (1.76-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.12-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.12-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.9.1) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-7) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ dnaclust_3-6_s390x.changes: --------------------------- Format: 1.8 Date: Thu, 04 Oct 2018 14:53:24 +0200 Source: dnaclust Binary: dnaclust dnaclust-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dnaclust - tool for clustering millions of short DNA sequences Changes: dnaclust (3-6) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Drop unneeded get-orig-source target Checksums-Sha1: a2cce09e8abdfab16d67b66054e5fd52ee4fbefd 1351624 dnaclust-dbgsym_3-6_s390x.deb f6fdc884e9174d44736adcff8b19f8097104e15f 4627 dnaclust_3-6_s390x.buildinfo c7be4930fbf538560e2aa7f3da609f7adf6b9877 81444 dnaclust_3-6_s390x.deb Checksums-Sha256: ac467fffd09854753171b2cd7558f79d6e50cc0658ce15096725f710e3088abd 1351624 dnaclust-dbgsym_3-6_s390x.deb 79134d1454b1489ad4f6b9856c18256a1a44e6a61514bf993f1559483d33595e 4627 dnaclust_3-6_s390x.buildinfo bbe804c26664f932a60e4abc9ccd477eff757993f3701ef16804e568ed309673 81444 dnaclust_3-6_s390x.deb Files: 015ca34ca852f38f837c5950b0f3550f 1351624 debug optional dnaclust-dbgsym_3-6_s390x.deb 2c88c0d9967d522f4f0ab84adf0779d7 4627 science optional dnaclust_3-6_s390x.buildinfo 5e14fc263630a47c43b5de30b94cfb22 81444 science optional dnaclust_3-6_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: dnaclust Binary: dnaclust Architecture: s390x Version: 3-6 Checksums-Md5: 015ca34ca852f38f837c5950b0f3550f 1351624 dnaclust-dbgsym_3-6_s390x.deb 5e14fc263630a47c43b5de30b94cfb22 81444 dnaclust_3-6_s390x.deb Checksums-Sha1: a2cce09e8abdfab16d67b66054e5fd52ee4fbefd 1351624 dnaclust-dbgsym_3-6_s390x.deb c7be4930fbf538560e2aa7f3da609f7adf6b9877 81444 dnaclust_3-6_s390x.deb Checksums-Sha256: ac467fffd09854753171b2cd7558f79d6e50cc0658ce15096725f710e3088abd 1351624 dnaclust-dbgsym_3-6_s390x.deb bbe804c26664f932a60e4abc9ccd477eff757993f3701ef16804e568ed309673 81444 dnaclust_3-6_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 26 Feb 2019 20:26:06 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-2), binutils (= 2.31.1-14), binutils-common (= 2.31.1-14), binutils-x86-64-linux-gnu (= 2.31.1-14), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.5), bzip2 (= 1.0.6-9), coreutils (= 8.30-2), cpp (= 4:8.2.0-2), cpp-8 (= 8.2.0-21), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.1-1), diffutils (= 1:3.7-2), dpkg (= 1.19.5), dpkg-dev (= 1.19.5), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-2), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.2.0-2), g++-8 (= 8.2.0-21), gcc (= 4:8.2.0-2), gcc-8 (= 8.2.0-21), gcc-8-base (= 8.2.0-21), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-2), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.52-5), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.2.0-21), libatomic1 (= 8.2.0-21), libattr1 (= 1:2.4.47-4), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-14), libblkid1 (= 2.33.1-0.1), libboost-dev (= 1.67.0.1), libboost-program-options-dev (= 1.67.0.1), libboost-program-options1.67-dev (= 1.67.0-13), libboost-program-options1.67.0 (= 1.67.0-13), libboost1.67-dev (= 1.67.0-13), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-7), libc-dev-bin (= 2.28-7), libc6 (= 2.28-7), libc6-dev (= 2.28-7), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.2.0-21), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.5), libdebconfclient0 (= 0.247), libdpkg-perl (= 1.19.5), libelf1 (= 0.176-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.1-1), libgcc-8-dev (= 8.2.0-21), libgcc1 (= 1:8.2.0-21), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-3), libgdbm6 (= 1.18.1-3), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.2.0-21), libgpg-error0 (= 1.35-1), libicu63 (= 63.1-6), libisl19 (= 0.20-2), libitm1 (= 8.2.0-21), liblsan0 (= 8.2.0-21), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-2), libmagic1 (= 1:5.35-2), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.2.0-21), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-11), libperl5.28 (= 5.28.1-4), libpipeline1 (= 1.5.1-2), libquadmath0 (= 8.2.0-21), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.2.0-21), libstdc++6 (= 8.2.0-21), libsystemd0 (= 241-1), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.2.0-21), libubsan1 (= 8.2.0-21), libuchardet0 (= 0.0.6-3), libudev1 (= 241-1), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.20-1), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-3), perl (= 5.28.1-4), perl-base (= 5.28.1-4), perl-modules-5.28 (= 5.28.1-4), po-debconf (= 1.0.21), rename (= 1.10-1), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1538657604" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ dnaclust-dbgsym_3-6_s390x.deb ----------------------------- new Debian package, version 2.0. size 1351624 bytes: control archive=656 bytes. 449 bytes, 12 lines control 318 bytes, 3 lines md5sums Package: dnaclust-dbgsym Source: dnaclust Version: 3-6 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1427 Depends: dnaclust (= 3-6) Section: debug Priority: optional Description: debug symbols for dnaclust Build-Ids: 42c7e37125a83b36131360ca1b220a1ca9cbd3ac 4c3da429bcd7066db79bf899e852b922a11d6804 7561888729cb4e54620a26831bcbd8a35b8e3d32 drwxr-xr-x root/root 0 2018-10-04 12:53 ./ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/debug/.build-id/42/ -rw-r--r-- root/root 345712 2018-10-04 12:53 ./usr/lib/debug/.build-id/42/c7e37125a83b36131360ca1b220a1ca9cbd3ac.debug drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/debug/.build-id/4c/ -rw-r--r-- root/root 857312 2018-10-04 12:53 ./usr/lib/debug/.build-id/4c/3da429bcd7066db79bf899e852b922a11d6804.debug drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/debug/.build-id/75/ -rw-r--r-- root/root 243824 2018-10-04 12:53 ./usr/lib/debug/.build-id/75/61888729cb4e54620a26831bcbd8a35b8e3d32.debug drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/share/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-04 12:53 ./usr/share/doc/dnaclust-dbgsym -> dnaclust dnaclust_3-6_s390x.deb ---------------------- new Debian package, version 2.0. size 81444 bytes: control archive=1096 bytes. 855 bytes, 18 lines control 677 bytes, 11 lines md5sums Package: dnaclust Version: 3-6 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 336 Depends: libboost-program-options1.67.0, libc6 (>= 2.4), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://dnaclust.sourceforge.net/ Description: tool for clustering millions of short DNA sequences dnaclust is a tool for clustering large number of short DNA sequences. The clusters are created in such a way that the "radius" of each clusters is no more than the specified threshold. . The input sequences to be clustered should be in Fasta format. The id of each sequence is based on the first word of the seqeunce in the Fasta format. The first word is the prefix of the header up to the first occurrence of white space characters in the header. drwxr-xr-x root/root 0 2018-10-04 12:53 ./ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/bin/ -rwxr-xr-x root/root 194760 2018-10-04 12:53 ./usr/bin/dnaclust -rwxr-xr-x root/root 2156 2018-10-04 12:53 ./usr/bin/dnaclust-abun -rwxr-xr-x root/root 2976 2018-10-04 12:53 ./usr/bin/dnaclust-ref -rwxr-xr-x root/root 3607 2018-10-04 12:53 ./usr/bin/find-large-clusters -rwxr-xr-x root/root 635 2018-10-04 12:53 ./usr/bin/generate_test_clusters -rwxr-xr-x root/root 1501 2018-10-04 12:53 ./usr/bin/star-align drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/lib/dnaclust/ -rwxr-xr-x root/root 75936 2018-10-04 12:53 ./usr/lib/dnaclust/fastaselect -rwxr-xr-x root/root 38992 2018-10-04 12:53 ./usr/lib/dnaclust/fastasort drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/share/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/share/doc/dnaclust/ -rw-r--r-- root/root 654 2018-10-04 12:53 ./usr/share/doc/dnaclust/changelog.Debian.gz -rw-r--r-- root/root 1043 2018-10-04 12:53 ./usr/share/doc/dnaclust/copyright drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-04 12:53 ./usr/share/man/man1/ -rw-r--r-- root/root 3114 2018-10-04 12:53 ./usr/share/man/man1/dnaclust.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 20208 Build-Time: 25 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 23 Job: dnaclust_3-6 Lintian: pass Machine Architecture: amd64 Package: dnaclust Package-Time: 60 Source-Version: 3-6 Space: 20208 Status: successful Version: 3-6 -------------------------------------------------------------------------------- Finished at 2019-02-26T20:26:07Z Build needed 00:01:00, 20208k disk space