sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | dssp 3.0.0-3 (armel) Fri, 20 Dec 2019 05:32:49 +0000 | +==============================================================================+ Package: dssp Version: 3.0.0-3 Source Version: 3.0.0-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-3d37db1b-2518-474e-91a5-b6a180f11ae1' with '<>' I: NOTICE: Log filtering will replace 'build/dssp-ROTMlD/resolver-8o3BOw' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-19-0816.24.pdiff [7093 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-19-1413.23.pdiff [8294 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-19-2013.54.pdiff [10.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-20-0214.21.pdiff [5610 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-20-0214.21.pdiff [5610 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-19-0816.24.pdiff [7215 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-19-1413.23.pdiff [10.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-19-2013.54.pdiff [13.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-20-0214.21.pdiff [6656 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-20-0214.21.pdiff [6656 B] Get:12 http://debian.oregonstate.edu/debian unstable/main armel Packages [7861 kB] Fetched 8128 kB in 2s (4161 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'dssp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dssp.git Please use: git clone https://salsa.debian.org/med-team/dssp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 112 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main dssp 3.0.0-3 (dsc) [2109 B] Get:2 http://debian.oregonstate.edu/debian unstable/main dssp 3.0.0-3 (tar) [48.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main dssp 3.0.0-3 (diff) [62.1 kB] Fetched 112 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/dssp-ROTMlD/dssp-3.0.0' with '<>' I: NOTICE: Log filtering will replace 'build/dssp-ROTMlD' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libboost-thread-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper (>= 11~), libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libboost-thread-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [441 B] Get:5 copy:/<>/apt_archive ./ Packages [531 B] Fetched 1929 B in 0s (96.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libboost-atomic1.67-dev:armel libboost-atomic1.67.0:armel libboost-chrono1.67-dev:armel libboost-chrono1.67.0:armel libboost-date-time1.67-dev:armel libboost-date-time1.67.0:armel libboost-filesystem-dev:armel libboost-filesystem1.67-dev:armel libboost-filesystem1.67.0:armel libboost-iostreams-dev:armel libboost-iostreams1.67-dev:armel libboost-iostreams1.67.0:armel libboost-program-options-dev:armel libboost-program-options1.67-dev:armel libboost-program-options1.67.0:armel libboost-regex1.67-dev:armel libboost-regex1.67.0:armel libboost-serialization1.67-dev:armel libboost-serialization1.67.0:armel libboost-system-dev:armel libboost-system1.67-dev:armel libboost-system1.67.0:armel libboost-thread-dev:armel libboost-thread1.67-dev:armel libboost-thread1.67.0:armel libboost1.67-dev:armel libbsd0 libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt1:armel libcrypt1-dev:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu-dev:armel libicu63 libicu63:armel libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sensible-utils ucf zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.67-doc:armel libboost-container1.67-dev:armel libboost-context1.67-dev:armel libboost-contract1.67-dev:armel libboost-coroutine1.67-dev:armel libboost-exception1.67-dev:armel libboost-fiber1.67-dev:armel libboost-graph1.67-dev:armel libboost-graph-parallel1.67-dev:armel libboost-locale1.67-dev:armel libboost-log1.67-dev:armel libboost-math1.67-dev:armel libboost-mpi1.67-dev:armel libboost-mpi-python1.67-dev:armel libboost-numpy1.67-dev:armel libboost-python1.67-dev:armel libboost-random1.67-dev:armel libboost-signals1.67-dev:armel libboost-stacktrace1.67-dev:armel libboost-test1.67-dev:armel libboost-timer1.67-dev:armel libboost-type-erasure1.67-dev:armel libboost-wave1.67-dev:armel libboost1.67-tools-dev:armel libmpfrc++-dev:armel libntl-dev:armel glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel icu-doc:armel libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libboost-atomic1.67-dev:armel libboost-atomic1.67.0:armel libboost-chrono1.67-dev:armel libboost-chrono1.67.0:armel libboost-date-time1.67-dev:armel libboost-date-time1.67.0:armel libboost-filesystem-dev:armel libboost-filesystem1.67-dev:armel libboost-filesystem1.67.0:armel libboost-iostreams-dev:armel libboost-iostreams1.67-dev:armel libboost-iostreams1.67.0:armel libboost-program-options-dev:armel libboost-program-options1.67-dev:armel libboost-program-options1.67.0:armel libboost-regex1.67-dev:armel libboost-regex1.67.0:armel libboost-serialization1.67-dev:armel libboost-serialization1.67.0:armel libboost-system-dev:armel libboost-system1.67-dev:armel libboost-system1.67.0:armel libboost-thread-dev:armel libboost-thread1.67-dev:armel libboost-thread1.67.0:armel libboost1.67-dev:armel libbsd0 libbz2-1.0:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt1:armel libcrypt1-dev:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu-dev:armel libicu63 libicu63:armel libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. Need to get 93.4 MB of archives. After this operation, 499 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-3 [32.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-21 [194 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.33.1-6 [2720 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-21cross1 [195 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [6813 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-1cross7 [1139 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-21cross1 [39.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-21cross1 [75.1 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-21cross1 [8880 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-21cross1 [341 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-21cross1 [376 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-21cross1 [110 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-21cross1 [644 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [7157 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.2.9-2cross7 [1312 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-1cross7 [2155 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-21cross1 [1709 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [7392 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.2 [174 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-1 [14.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.3-2 [1320 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.2 [1018 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 63.2-2 [189 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-21 [39.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.10-7 [100 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-6 [2334 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-21 [347 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-21 [9080 B] Get:80 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-21 [76.7 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-21 [415 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-21 [111 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-21 [645 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.3.15-1 [998 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1-dev armel 1:4.4.10-7 [120 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-6 [2185 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-21 [1708 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libboost1.67-dev armel 1.67.0-16 [8389 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libboost-atomic1.67.0 armel 1.67.0-16 [226 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libboost-atomic1.67-dev armel 1.67.0-16 [225 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libboost-system1.67.0 armel 1.67.0-16 [230 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libboost-chrono1.67.0 armel 1.67.0-16 [232 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libboost-chrono1.67-dev armel 1.67.0-16 [235 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel libboost-date-time1.67.0 armel 1.67.0-16 [237 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel libboost-serialization1.67.0 armel 1.67.0-16 [301 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libboost-serialization1.67-dev armel 1.67.0-16 [370 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libboost-date-time1.67-dev armel 1.67.0-16 [249 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libboost-filesystem1.67.0 armel 1.67.0-16 [255 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libboost-system1.67-dev armel 1.67.0-16 [232 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libboost-filesystem1.67-dev armel 1.67.0-16 [263 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libboost-filesystem-dev armel 1.67.0.2 [4008 B] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libicu63 armel 63.2-2 [7979 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libboost-regex1.67.0 armel 1.67.0-16 [453 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libicu-dev armel 63.2-2 [8922 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libboost-regex1.67-dev armel 1.67.0-16 [556 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libbz2-1.0 armel 1.0.8-2 [45.3 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1+b1 [84.7 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libboost-iostreams1.67.0 armel 1.67.0-16 [246 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libboost-iostreams1.67-dev armel 1.67.0-16 [255 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libboost-iostreams-dev armel 1.67.0.2 [3956 B] Get:111 http://debian.oregonstate.edu/debian unstable/main armel libboost-program-options1.67.0 armel 1.67.0-16 [332 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libboost-program-options1.67-dev armel 1.67.0-16 [383 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libboost-program-options-dev armel 1.67.0.2 [3980 B] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libboost-system-dev armel 1.67.0.2 [4112 B] Get:115 http://debian.oregonstate.edu/debian unstable/main armel libboost-thread1.67.0 armel 1.67.0-16 [263 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armel libboost-thread1.67-dev armel 1.67.0-16 [273 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel libboost-thread-dev armel 1.67.0.2 [4000 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.4 MB in 1s (64.0 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-armel-cross (9.2.1-21cross1) ... Setting up gcc-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up g++-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libcrypt1:armel (1:4.4.10-7) ... 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Setting up libboost-thread1.67-dev:armel (1.67.0-16) ... Setting up libboost-system-dev:armel (1.67.0.2) ... Setting up libboost-iostreams-dev:armel (1.67.0.2) ... Setting up libboost-filesystem-dev:armel (1.67.0.2) ... Setting up libboost-thread-dev:armel (1.67.0.2) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.29-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-6 dpkg-dev_1.19.7 g++-8_8.3.0-26 g++-9_9.2.1-21 gcc-8_8.3.0-26 gcc-9_9.2.1-21 libc6-dev_2.29-6 libstdc++-8-dev_8.3.0-26 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armel-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armel-cross_9.2.1-21cross1 linux-libc-dev_5.3.15-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6 binutils-arm-linux-gnueabi_2.33.1-6 binutils-common_2.33.1-6 binutils-x86-64-linux-gnu_2.33.1-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-26 cpp-9_9.2.1-21 cpp-9-arm-linux-gnueabi_9.2.1-21cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.2 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-26 g++-9_9.2.1-21 g++-9-arm-linux-gnueabi_9.2.1-21cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-26 gcc-8-base_8.3.0-26 gcc-9_9.2.1-21 gcc-9-arm-linux-gnueabi_9.2.1-21cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-21cross1 gcc-9-base_9.2.1-21 gcc-9-cross-base_9.2.1-21cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.23 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-21 libasan5-armel-cross_9.2.1-21cross1 libatomic1_9.2.1-21 libatomic1-armel-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6 libblkid1_2.34-0.1 libboost-atomic1.67-dev_1.67.0-16 libboost-atomic1.67.0_1.67.0-16 libboost-chrono1.67-dev_1.67.0-16 libboost-chrono1.67.0_1.67.0-16 libboost-date-time1.67-dev_1.67.0-16 libboost-date-time1.67.0_1.67.0-16 libboost-filesystem-dev_1.67.0.2 libboost-filesystem1.67-dev_1.67.0-16 libboost-filesystem1.67.0_1.67.0-16 libboost-iostreams-dev_1.67.0.2 libboost-iostreams1.67-dev_1.67.0-16 libboost-iostreams1.67.0_1.67.0-16 libboost-program-options-dev_1.67.0.2 libboost-program-options1.67-dev_1.67.0-16 libboost-program-options1.67.0_1.67.0-16 libboost-regex1.67-dev_1.67.0-16 libboost-regex1.67.0_1.67.0-16 libboost-serialization1.67-dev_1.67.0-16 libboost-serialization1.67.0_1.67.0-16 libboost-system-dev_1.67.0.2 libboost-system1.67-dev_1.67.0-16 libboost-system1.67.0_1.67.0-16 libboost-thread-dev_1.67.0.2 libboost-thread1.67-dev_1.67.0-16 libboost-thread1.67.0_1.67.0-16 libboost1.67-dev_1.67.0-16 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-6 libc-dev-bin_2.29-6 libc6_2.29-6 libc6-armel-cross_2.29-1cross7 libc6-dev_2.29-6 libc6-dev-armel-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1+b1 libcc1-0_9.2.1-21 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt1_1:4.4.10-7 libcrypt1-dev_1:4.4.10-7 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.2 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 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libyaml-perl_1.29-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.15-1 linux-libc-dev-armel-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dssp Binary: dssp Architecture: any Version: 3.0.0-3 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman , Laszlo Kajan , Andreas Tille Homepage: http://www.cmbi.ru.nl/dssp.html Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/dssp Vcs-Git: https://salsa.debian.org/med-team/dssp.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libboost-thread-dev Package-List: dssp deb science optional arch=any Checksums-Sha1: 4b35bc8e7d9f62262b00b918d5b194fbdd65ffaa 47974 dssp_3.0.0.orig.tar.gz efaf3bc6d47258d9eea0a389aa1f07d0b115fe2e 62124 dssp_3.0.0-3.debian.tar.xz Checksums-Sha256: 25d39a2107767b622a59dd9fa790112c1516564b8518fc6ac0fab081d5ac3ab0 47974 dssp_3.0.0.orig.tar.gz 52782766c11d82e410637538d0b801d6a0def5cc38e3af3c10e149b15c9f40aa 62124 dssp_3.0.0-3.debian.tar.xz Files: e34b0d67622a702661fad441f22a65b0 47974 dssp_3.0.0.orig.tar.gz a2df58196f5112ac3174d4faa02ad701 62124 dssp_3.0.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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10:22:14 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dssp_3.0.0-3.dsc dpkg-source: info: extracting dssp in /<> dpkg-source: info: unpacking dssp_3.0.0.orig.tar.gz dpkg-source: info: unpacking dssp_3.0.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying hardening.patch dpkg-source: info: applying boost1.65.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-3d37db1b-2518-474e-91a5-b6a180f11ae1 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 3.0.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf obj/* mkdssp make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc make[1]: Entering directory '/<>' mkdir -p obj arm-linux-gnueabi-g++ -MD -c -o obj/mkdssp.o src/mkdssp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG arm-linux-gnueabi-g++ -MD -c -o obj/dssp.o src/dssp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG arm-linux-gnueabi-g++ -MD -c -o obj/primitives-3d.o src/primitives-3d.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG arm-linux-gnueabi-g++ -MD -c -o obj/structure.o src/structure.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG In file included from src/structure.cpp:9: src/structure.h: In constructor ‘MResidue::MResidue(int32, char, MResidue*)’: src/structure.h:283:17: warning: ‘MResidue::mRadius’ will be initialized after [-Wreorder] 283 | double mRadius; | ^~~~~~~ src/structure.h:274:33: warning: ‘MAtom MResidue::mH’ [-Wreorder] 274 | MAtom mC, mN, mCA, mO, mH; | ^~ src/structure.cpp:440:1: warning: when initialized here [-Wreorder] 440 | MResidue::MResidue(int32 inNumber, char inTypeCode, MResidue* inPrevious) | ^~~~~~~~ In file included from src/structure.cpp:9: src/structure.h: In constructor ‘MProtein::MProtein(const string&, MChain*)’: src/structure.h:430:40: warning: ‘MProtein::mNrOfHBondsInAntiparallelBridges’ will be initialized after [-Wreorder] 430 | uint32 mNrOfHBondsInParallelBridges, mNrOfHBondsInAntiparallelBridges; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/structure.h:424:17: warning: ‘uint32 MProtein::mResidueCount’ [-Wreorder] 424 | uint32 mResidueCount, mChainBreaks; | ^~~~~~~~~~~~~ src/structure.cpp:1031:1: warning: when initialized here [-Wreorder] 1031 | MProtein::MProtein(const std::string& inID, MChain* inChain) | ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from src/align-2d.h:16, from src/structure.h:9, from src/structure.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MPoint&}; _Tp = MPoint; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from src/align-2d.h:16, from src/structure.h:9, from src/structure.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void MProtein::GetPoints(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void MProtein::GetCAlphaLocations(const string&, std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In static member function ‘static {anonymous}::MSurfaceDots& {anonymous}::MSurfaceDots::Instance()’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void MResidue::GetPoints(std::vector&) const’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72, from src/align-2d.h:16, from src/structure.h:9, from src/structure.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MAtom&}; _Tp = MAtom; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MAccumulator::candidate&}; _Tp = MAccumulator::candidate; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/9/algorithm:62, from src/align-2d.h:14, from src/structure.h:9, from src/structure.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = MAccumulator::candidate; _Compare = __gnu_cxx::__ops::_Iter_less_val]’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from src/align-2d.h:16, from src/structure.h:9, from src/structure.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void MAccumulator::operator()(const MPoint&, const MPoint&, double, double)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/9/algorithm:62, from src/align-2d.h:14, from src/structure.h:9, from src/structure.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = MAccumulator::candidate; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67, from src/align-2d.h:16, from src/structure.h:9, from src/structure.cpp:9: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘double MResidue::CalculateSurface(const MAtom&, double, const std::vector&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In constructor ‘MResidue::MResidue(int32, MResidue*, const std::vector&)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void MProtein::ReadPDB(std::istream&, bool)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘void MProtein::ReadmmCIF(std::istream&, bool)’: /usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -MD -c -o obj/utils.o src/utils.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG arm-linux-gnueabi-g++ -MD -c -o obj/mas.o src/mas.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG arm-linux-gnueabi-g++ -MD -c -o obj/iocif.o src/iocif.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG arm-linux-gnueabi-g++ -o mkdssp obj/mkdssp.o obj/dssp.o obj/primitives-3d.o obj/structure.o obj/utils.o obj/mas.o obj/iocif.o -Wl,-z,relro -lboost_thread -lboost_program_options -lboost_iostreams -lboost_system -g -pthread -Wl,-z,relro make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/dssp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' install -d /<>/debian/dssp/usr/bin /<>/debian/dssp/usr/share/man/man1 install -m 755 mkdssp /<>/debian/dssp/usr/bin/mkdssp install doc/mkdssp.1 /<>/debian/dssp/usr/share/man/man1/mkdssp.1 make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/dssp/usr/bin/mkdssp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'dssp' in '../dssp_3.0.0-3_armel.deb'. dpkg-deb: building package 'dssp-dbgsym' in '../dssp-dbgsym_3.0.0-3_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../dssp_3.0.0-3_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-12-20T05:34:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ dssp_3.0.0-3_armel.changes: --------------------------- Format: 1.8 Date: Sun, 28 Oct 2018 11:18:40 +0100 Source: dssp Binary: dssp dssp-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 3.0.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dssp - protein secondary structure assignment based on 3D structure Changes: dssp (3.0.0-3) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Remove trailing whitespace in debian/copyright Checksums-Sha1: a56a171f755e195b457cacb63d9437f4491ec4b7 2857352 dssp-dbgsym_3.0.0-3_armel.deb 1a306aac77ee670e285722b2d0cad3d677c9bca3 5768 dssp_3.0.0-3_armel.buildinfo 302afe5ce4896fb99f2e48e8b02c2d6acf617cce 230352 dssp_3.0.0-3_armel.deb Checksums-Sha256: d1cde81ea6c1186bc03e7d9402f0282c4071ee2966552178b1ca8fc4d7ea83e0 2857352 dssp-dbgsym_3.0.0-3_armel.deb a9ee53fc4bf7fb1551497be61475260f7dd64295921c8a49853de956aacc31e3 5768 dssp_3.0.0-3_armel.buildinfo 6956d07b9c715e070fda43f92ec2d514070b38ab0bb3c25cf950175c1ba37bd9 230352 dssp_3.0.0-3_armel.deb Files: 2e1515633bf26c68a9a4a4870440779c 2857352 debug optional dssp-dbgsym_3.0.0-3_armel.deb d0836a605fee54829c90645214bad862 5768 science optional dssp_3.0.0-3_armel.buildinfo 1a884b767ec18880a226a50d03a75f4d 230352 science optional dssp_3.0.0-3_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: dssp Binary: dssp Architecture: armel Version: 3.0.0-3 Checksums-Md5: 2e1515633bf26c68a9a4a4870440779c 2857352 dssp-dbgsym_3.0.0-3_armel.deb 1a884b767ec18880a226a50d03a75f4d 230352 dssp_3.0.0-3_armel.deb Checksums-Sha1: a56a171f755e195b457cacb63d9437f4491ec4b7 2857352 dssp-dbgsym_3.0.0-3_armel.deb 302afe5ce4896fb99f2e48e8b02c2d6acf617cce 230352 dssp_3.0.0-3_armel.deb Checksums-Sha256: d1cde81ea6c1186bc03e7d9402f0282c4071ee2966552178b1ca8fc4d7ea83e0 2857352 dssp-dbgsym_3.0.0-3_armel.deb 6956d07b9c715e070fda43f92ec2d514070b38ab0bb3c25cf950175c1ba37bd9 230352 dssp_3.0.0-3_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 20 Dec 2019 05:34:32 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-5), binutils (= 2.33.1-6), binutils-common (= 2.33.1-6), binutils-x86-64-linux-gnu (= 2.33.1-6), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-26), cpp-9 (= 9.2.1-21), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7.2), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.37-6), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-21), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-26), gcc-8-base (= 8.3.0-26), gcc-9 (= 9.2.1-21), gcc-9-base (= 9.2.1-21), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.23), icu-devtools (= 63.2-2), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-21), libatomic1 (= 9.2.1-21), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.33.1-6), libblkid1 (= 2.34-0.1), libboost-atomic1.67-dev (= 1.67.0-16), libboost-atomic1.67.0 (= 1.67.0-16), libboost-chrono1.67-dev (= 1.67.0-16), libboost-chrono1.67.0 (= 1.67.0-16), libboost-date-time1.67-dev (= 1.67.0-16), libboost-date-time1.67.0 (= 1.67.0-16), libboost-filesystem-dev (= 1.67.0.2), libboost-filesystem1.67-dev (= 1.67.0-16), libboost-filesystem1.67.0 (= 1.67.0-16), libboost-iostreams-dev (= 1.67.0.2), libboost-iostreams1.67-dev (= 1.67.0-16), libboost-iostreams1.67.0 (= 1.67.0-16), libboost-program-options-dev (= 1.67.0.2), libboost-program-options1.67-dev (= 1.67.0-16), libboost-program-options1.67.0 (= 1.67.0-16), libboost-regex1.67-dev (= 1.67.0-16), libboost-regex1.67.0 (= 1.67.0-16), libboost-serialization1.67-dev (= 1.67.0-16), libboost-serialization1.67.0 (= 1.67.0-16), libboost-system-dev (= 1.67.0.2), libboost-system1.67-dev (= 1.67.0-16), libboost-system1.67.0 (= 1.67.0-16), libboost-thread-dev (= 1.67.0.2), libboost-thread1.67-dev (= 1.67.0-16), libboost-thread1.67.0 (= 1.67.0-16), libboost1.67-dev (= 1.67.0-16), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-6), libc-dev-bin (= 2.29-6), libc6 (= 2.29-6), libc6-dev (= 2.29-6), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 9.2.1-21), libcroco3 (= 0.6.13-1), libcrypt1 (= 1:4.4.10-7), libcrypt1-dev (= 1:4.4.10-7), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7.2), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.3-1), libgcc-8-dev (= 8.3.0-26), libgcc-9-dev (= 9.2.1-21), libgcc1 (= 1:9.2.1-21), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.3-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-21), libgpg-error0 (= 1.36-7), libicu-dev (= 63.2-2), libicu63 (= 63.2-2), libisl22 (= 0.22-2), libitm1 (= 9.2.1-21), liblsan0 (= 9.2.1-21), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-6), libmagic1 (= 1:5.37-6), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-26), libncursesw6 (= 6.1+20191019-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.1-3), libquadmath0 (= 9.2.1-21), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-8-dev (= 8.3.0-26), libstdc++-9-dev (= 9.2.1-21), libstdc++6 (= 9.2.1-21), libsub-override-perl (= 0.09-2), libsystemd0 (= 244-3), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-21), libubsan1 (= 9.2.1-21), libuchardet0 (= 0.0.6-3), libudev1 (= 244-3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-8), linux-libc-dev (= 5.3.15-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1540721920" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ dssp-dbgsym_3.0.0-3_armel.deb ----------------------------- new Debian package, version 2.0. size 2857352 bytes: control archive=528 bytes. 359 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: dssp-dbgsym Source: dssp Version: 3.0.0-3 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 2995 Depends: dssp (= 3.0.0-3) Section: debug Priority: optional Description: debug symbols for dssp Build-Ids: 4c2e5433c0128d7c1e972f1d490c825de09527f9 drwxr-xr-x root/root 0 2018-10-28 10:18 ./ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/lib/debug/.build-id/4c/ -rw-r--r-- root/root 3056384 2018-10-28 10:18 ./usr/lib/debug/.build-id/4c/2e5433c0128d7c1e972f1d490c825de09527f9.debug drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-28 10:18 ./usr/share/doc/dssp-dbgsym -> dssp dssp_3.0.0-3_armel.deb ---------------------- new Debian package, version 2.0. size 230352 bytes: control archive=1040 bytes. 748 bytes, 16 lines control 673 bytes, 10 lines md5sums Package: dssp Version: 3.0.0-3 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 569 Depends: libboost-program-options1.67.0, libboost-system1.67.0, libboost-thread1.67.0, libc6 (>= 2.29), libgcc1 (>= 1:4.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.cmbi.ru.nl/dssp.html Description: protein secondary structure assignment based on 3D structure DSSP is an application you use to assign the secondary structure of a protein based on its solved three dimensional (3D) structure. . This version (2) of DSSP is a rewrite that produces the same output as the original DSSP, but deals better with exceptions in PDB files and is much faster. drwxr-xr-x root/root 0 2018-10-28 10:18 ./ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/bin/ lrwxrwxrwx root/root 0 2018-10-28 10:18 ./usr/bin/dssp -> mkdssp -rwxr-xr-x root/root 470328 2018-10-28 10:18 ./usr/bin/mkdssp drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/doc/dssp/ -rw-r--r-- root/root 1318 2018-10-28 10:18 ./usr/share/doc/dssp/README.test -rw-r--r-- root/root 533 2017-09-21 09:25 ./usr/share/doc/dssp/README.txt -rw-r--r-- root/root 1440 2018-10-28 10:18 ./usr/share/doc/dssp/changelog.Debian.gz -rw-r--r-- root/root 541 2017-09-21 09:27 ./usr/share/doc/dssp/changelog.gz -rw-r--r-- root/root 3716 2018-10-28 10:18 ./usr/share/doc/dssp/copyright drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/doc/dssp/examples/ -rw-r--r-- root/root 1447 2018-10-28 10:18 ./usr/share/doc/dssp/examples/2OSL_fragment.pdb.gz -rw-r--r-- root/root 82571 2018-10-28 10:18 ./usr/share/doc/dssp/examples/5bmg.pdb.gz -rw-r--r-- root/root 756 2018-10-28 10:18 ./usr/share/doc/dssp/installation-test drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-28 10:18 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2018-10-28 10:18 ./usr/share/man/man1/dssp.1.gz -> mkdssp.1.gz -rw-r--r-- root/root 2550 2018-10-28 10:18 ./usr/share/man/man1/mkdssp.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [571 B] Get:5 copy:/<>/apt_archive ./ Packages [658 B] Fetched 2192 B in 0s (114 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 9286 kB of archives. After this operation, 26.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.8 [19.1 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.30.1-1 [649 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libberkeleydb-perl amd64 0.62-1+b1 [124 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.21-1 [368 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-5 [26.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.42-1 [82.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008000-1 [332 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.42.0 [1304 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9286 kB in 0s (35.1 MB/s) Selecting previously unselected package readline-common. (Reading database ... 35777 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.8_all.deb ... Unpacking netbase (5.8) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up lintian (2.42.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-6) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 33888 Build-Time: 69 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 23 Job: dssp_3.0.0-3 Lintian: pass Machine Architecture: amd64 Package: dssp Package-Time: 104 Source-Version: 3.0.0-3 Space: 33888 Status: successful Version: 3.0.0-3 -------------------------------------------------------------------------------- Finished at 2019-12-20T05:34:33Z Build needed 00:01:44, 33888k disk space