sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | fastml 3.11-1 (armel) Tue, 30 Jul 2019 12:28:08 +0000 | +==============================================================================+ Package: fastml Version: 3.11-1 Source Version: 3.11-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-10643309-d4c4-492e-ba51-a632796715f1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-30-0834.52.pdiff [3790 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-30-0834.52.pdiff [15.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-30-0834.52.pdiff [3790 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-30-0834.52.pdiff [15.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armel Packages [8050 kB] Fetched 8274 kB in 2s (4314 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fastml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastml.git Please use: git clone https://salsa.debian.org/med-team/fastml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 860 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main fastml 3.11-1 (dsc) [1892 B] Get:2 http://debian.oregonstate.edu/debian unstable/main fastml 3.11-1 (tar) [849 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main fastml 3.11-1 (diff) [9432 B] Fetched 860 kB in 1s (820 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fastml-EcQpI1/fastml-3.11' with '<>' I: NOTICE: Log filtering will replace 'build/fastml-EcQpI1' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-eA2cDv/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-eA2cDv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-eA2cDv/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-eA2cDv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-eA2cDv/apt_archive ./ Sources [359 B] Get:5 copy:/<>/resolver-eA2cDv/apt_archive ./ Packages [452 B] Fetched 1768 B in 0s (87.1 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libmpx2-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabi gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sbuild-build-depends-core-dummy:armel sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After this operation, 155 MB of additional disk space will be used. Get:1 copy:/<>/resolver-eA2cDv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.32.51.20190727-1 [2913 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [6548 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.28-10cross3 [1190 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.1.0-8cross1 [39.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.1.0-8cross1 [74.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.1.0-8cross1 [8936 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.1.0-8cross1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.1.0-8cross1 [375 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.1.0-8cross1 [110 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armel-cross all 8.3.0-19cross1 [602 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [6981 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:8.3.0-1 [1460 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 4.19.37-5cross3 [1255 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.28-10cross3 [2183 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armel-cross all 8.3.0-19cross1 [1548 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [7128 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:8.3.0-1 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 1s (57.6 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up linux-libc-dev-armel-cross (4.19.37-5cross3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-arm-linux-gnueabi (4:8.3.0-1) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up libc6-armel-cross (2.28-10cross3) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-armel-cross (2.28-10cross3) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgomp1-armel-cross (9.1.0-8cross1) ... Setting up libatomic1-armel-cross (9.1.0-8cross1) ... Setting up libgcc1-armel-cross (1:9.1.0-8cross1) ... Setting up libasan5-armel-cross (9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-armel-cross (9.1.0-8cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libubsan1-armel-cross (9.1.0-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-armel-cross (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-8-arm-linux-gnueabi (8.3.0-19cross1) ... Setting up libstdc++-8-dev-armel-cross (8.3.0-19cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-arm-linux-gnueabi (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-8-arm-linux-gnueabi (8.3.0-19cross1) ... Setting up g++-arm-linux-gnueabi (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.6) ... Setting up sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-eA2cDv/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-eA2cDv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-eA2cDv/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-eA2cDv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-eA2cDv/apt_archive ./ Sources [481 B] Get:5 copy:/<>/resolver-eA2cDv/apt_archive ./ Packages [571 B] Fetched 2015 B in 0s (98.4 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-eA2cDv/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armel. (Reading database ... 15014 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~) Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~) dpkg-deb: building package 'sbuild-build-depends-fastml-dummy' in '/<>/resolver-eA2cDv/apt_archive/sbuild-build-depends-fastml-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-fastml-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-eA2cDv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-eA2cDv/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-eA2cDv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-eA2cDv/apt_archive ./ Sources [632 B] Get:5 copy:/<>/resolver-eA2cDv/apt_archive ./ Packages [714 B] Fetched 2309 B in 0s (125 kB/s) Reading package lists... Reading package lists... Install fastml build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gcc-9-base:armel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libglib2.0-0 libgomp1:armel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armel libstdc++6:armel libsub-override-perl libtool libubsan1:armel libuchardet0 linux-libc-dev:armel m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libstdc++-8-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gcc-9-base:armel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libglib2.0-0 libgomp1:armel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armel libstdc++6:armel libsub-override-perl libtool libubsan1:armel libuchardet0 linux-libc-dev:armel m4 man-db po-debconf sbuild-build-depends-fastml-dummy:armel 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 18.9 MB of archives. After this operation, 83.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-eA2cDv/apt_archive ./ sbuild-build-depends-fastml-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.3.0-1 [21.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.3.0-1 [13.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-1 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.3 [1026 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main armel gcc-8-base armel 8.3.0-19 [192 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.1.0-10 [39.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.28-10 [2399 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.1.0-10 [347 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.1.0-10 [9088 B] Get:36 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 4.19.37-6 [1168 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.28-10 [2185 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.1.0-10 [76.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.1.0-10 [414 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.1.0-10 [111 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armel libgcc-8-dev armel 8.3.0-19 [601 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-8-dev armel 8.3.0-19 [1550 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.9 MB in 0s (50.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15014 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gcc-9-base:armel. Preparing to unpack .../06-gcc-9-base_9.1.0-10_armel.deb ... Unpacking gcc-9-base:armel (9.1.0-10) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.3.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.3.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.3.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.3.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.12.20190723-1_amd64.deb ... Unpacking dwz (0.12.20190723-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../22-libglib2.0-0_2.60.6-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20190713-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190713-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.2.3_all.deb ... Unpacking debhelper (12.2.3) ... Selecting previously unselected package gcc-8-base:armel. Preparing to unpack .../29-gcc-8-base_8.3.0-19_armel.deb ... Unpacking gcc-8-base:armel (8.3.0-19) ... Selecting previously unselected package libgcc1:armel. Preparing to unpack .../30-libgcc1_1%3a9.1.0-10_armel.deb ... Unpacking libgcc1:armel (1:9.1.0-10) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../31-libc6_2.28-10_armel.deb ... Unpacking libc6:armel (2.28-10) ... Selecting previously unselected package libasan5:armel. Preparing to unpack .../32-libasan5_9.1.0-10_armel.deb ... Unpacking libasan5:armel (9.1.0-10) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../33-libatomic1_9.1.0-10_armel.deb ... Unpacking libatomic1:armel (9.1.0-10) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../34-linux-libc-dev_4.19.37-6_armel.deb ... Unpacking linux-libc-dev:armel (4.19.37-6) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../35-libc6-dev_2.28-10_armel.deb ... Unpacking libc6-dev:armel (2.28-10) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../36-libgomp1_9.1.0-10_armel.deb ... Unpacking libgomp1:armel (9.1.0-10) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../37-libstdc++6_9.1.0-10_armel.deb ... Unpacking libstdc++6:armel (9.1.0-10) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../38-libubsan1_9.1.0-10_armel.deb ... Unpacking libubsan1:armel (9.1.0-10) ... Selecting previously unselected package libgcc-8-dev:armel. Preparing to unpack .../39-libgcc-8-dev_8.3.0-19_armel.deb ... Unpacking libgcc-8-dev:armel (8.3.0-19) ... Selecting previously unselected package libstdc++-8-dev:armel. Preparing to unpack .../40-libstdc++-8-dev_8.3.0-19_armel.deb ... Unpacking libstdc++-8-dev:armel (8.3.0-19) ... Selecting previously unselected package sbuild-build-depends-fastml-dummy:armel. Preparing to unpack .../41-sbuild-build-depends-fastml-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-fastml-dummy:armel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:armel (4.19.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190713-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armel (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:armel (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.3.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armel (2.28-10) ... Setting up libc6-dev:armel (2.28-10) ... Setting up libgcc1:armel (1:9.1.0-10) ... Setting up libgomp1:armel (9.1.0-10) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armel (9.1.0-10) ... Setting up libatomic1:armel (9.1.0-10) ... Setting up dh-strip-nondeterminism (1.3.0-1) ... Setting up libstdc++6:armel (9.1.0-10) ... Setting up debhelper (12.2.3) ... Setting up libubsan1:armel (9.1.0-10) ... Setting up libgcc-8-dev:armel (8.3.0-19) ... Setting up libstdc++-8-dev:armel (8.3.0-19) ... Setting up sbuild-build-depends-fastml-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armel-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armel-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-6 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-arm-linux-gnueabi_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-arm-linux-gnueabi_8.3.0-19cross1 cpp-arm-linux-gnueabi_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armel_12.6 dash_0.5.10.2-6 debconf_1.5.72 debhelper_12.2.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.3.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190723-1 e2fsprogs_1.45.3-3 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-arm-linux-gnueabi_8.3.0-19cross1 g++-arm-linux-gnueabi_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-arm-linux-gnueabi_8.3.0-19cross1 gcc-8-arm-linux-gnueabi-base_8.3.0-19cross1 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-arm-linux-gnueabi_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-10 libasan5-armel-cross_9.1.0-8cross1 libatomic1_9.1.0-10 libatomic1-armel-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armel-cross_2.28-10cross3 libc6-dev_2.28-10 libc6-dev-armel-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-3 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.3.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-armel-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-armel-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.8-2 libgomp1_9.1.0-10 libgomp1-armel-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190713-1 libncursesw6_6.1+20190713-1 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.1.0-10 libseccomp2_2.4.1-2 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-3 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armel-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armel-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-1 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libubsan1-armel-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-6 linux-libc-dev-armel-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-3 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-1 ncurses-bin_6.1+20190713-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-fastml-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-3 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Jul 27 19:35:05 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastml_3.11-1.dsc dpkg-source: info: extracting fastml in /<> dpkg-source: info: unpacking fastml_3.11.orig.tar.gz dpkg-source: info: unpacking fastml_3.11-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_5.patch dpkg-source: info: applying fix_makefile4test.patch dpkg-source: info: applying fix_intall_target.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying change_to_tests_dir_only_if_existing.patch dpkg-source: info: applying skip_failing_tests.patch dpkg-source: info: applying remove-template-depth.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-10643309-d4c4-492e-ba51-a632796715f1 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fastml dpkg-buildpackage: info: source version 3.11-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' cd libs;make clean make[3]: Entering directory '/<>/libs' cd phylogeny && make clean make[4]: Entering directory '/<>/libs/phylogeny' rm -f libEvolTree.a libEvolTreeDebug.a libEvolTreeDoubleRep.a *.o make[4]: Leaving directory '/<>/libs/phylogeny' make[3]: Leaving directory '/<>/libs' cd programs;make clean make[3]: Entering directory '/<>/programs' cd fastml && make clean make[4]: Entering directory '/<>/programs/fastml' rm -f libfastml.a libfastmlDebug.a libfastmlDoubleRep.a fastml fastml.debug fastml.doubleRep *.o make[4]: Leaving directory '/<>/programs/fastml' cd gainLoss && make clean make[4]: Entering directory '/<>/programs/gainLoss' rm -f libgainLoss.a libgainLossDebug.a libgainLossDoubleRep.a gainLoss gainLoss.debug gainLoss.doubleRep *.o make[4]: Leaving directory '/<>/programs/gainLoss' cd indelCoder && make clean make[4]: Entering directory '/<>/programs/indelCoder' rm -f libindelCoder.a libindelCoderDebug.a libindelCoderDoubleRep.a indelCoder indelCoder.debug indelCoder.doubleRep *.o make[4]: Leaving directory '/<>/programs/indelCoder' make[3]: Leaving directory '/<>/programs' make[2]: Leaving directory '/<>' rm -f libs/phylogeny/make.dep \ programs/fastml/make.dep \ programs/gainLoss/make.dep \ programs/indelCoder/make.dep make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc make[1]: Entering directory '/<>' cd libs;make all make[2]: Entering directory '/<>/libs' cd phylogeny && make all make[3]: Entering directory '/<>/libs/phylogeny' making depend arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o AddLog.o AddLog.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o NNiProp.o NNiProp.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o NNiSep.o NNiSep.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o Nni.o Nni.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o aaJC.o aaJC.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o allTrees.o allTrees.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from allTrees.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from allTrees.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void allTrees::recursiveFind(tree, const stochasticProcess&, const sequenceContainer&, std::vector, const Vdouble*, int, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o allTreesSeparateModel.o allTreesSeparateModel.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o alphabet.o alphabet.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o amino.o amino.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestAlpha.o bestAlpha.cpp bestAlpha.cpp: In constructor 'bestAlphaAndBetaAndBBL::bestAlphaAndBetaAndBBL(tree&, const sequenceContainer&, stochasticProcess&, const Vdouble*, double, double, double, double, double, double, double, int, int)': bestAlpha.cpp:371:10: warning: variable 'oldA' set but not used [-Wunused-but-set-variable] MDOUBLE oldA=0; ^~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from bestAlpha.h:6, from bestAlpha.cpp:6: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from bestAlpha.h:6, from bestAlpha.cpp:6: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'bestAlphasAndBBLProportional::bestAlphasAndBBLProportional(tree&, std::vector&, multipleStochasticProcess*, gammaDistribution*, Vdouble, double, double, double, int, int, bool, bool, std::__cxx11::string, bool, bool, const Vdouble*, double, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestAlphaManyTrees.o bestAlphaManyTrees.cpp bestAlphaManyTrees.cpp: In function 'void bestAlpha::optimizeAlphaNG_EM_PROP_n_alpha(tree&, std::vector&, std::vector&, const std::vector*>*, std::vector&, double&, int, double)': bestAlphaManyTrees.cpp:184:10: warning: variable 'ax' set but not used [-Wunused-but-set-variable] MDOUBLE ax,bx,cx; // left, midle, right limit on alpha ^~ bestAlphaManyTrees.cpp:184:13: warning: variable 'bx' set but not used [-Wunused-but-set-variable] MDOUBLE ax,bx,cx; // left, midle, right limit on alpha ^~ bestAlphaManyTrees.cpp:184:16: warning: variable 'cx' set but not used [-Wunused-but-set-variable] MDOUBLE ax,bx,cx; // left, midle, right limit on alpha ^~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestHKYparam.o bestHKYparam.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from bestHKYparam.h:6, from bestHKYparam.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from bestHKYparam.h:6, from bestHKYparam.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'bestHkyParamAlphaAndBBLProportional::bestHkyParamAlphaAndBBLProportional(tree&, std::vector&, multipleStochasticProcess*, gammaDistribution*, Vdouble, Vdouble, double, double, double, double, int, int, bool, bool, std::__cxx11::string, bool, bool, const Vdouble*, double, double, double, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bootstrap.o bootstrap.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblEM.o bblEM.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblEMfixRoot.o bblEMfixRoot.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblEMProprtional.o bblEMProprtional.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblEMProportionalEB.o bblEMProportionalEB.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from bblEM.h:5, from bblEMProportionalEB.cpp:2: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from bblEM.h:5, from bblEMProportionalEB.cpp:2: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void bblEMProportionalEB::allocatePlacePropEB()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblLSProportionalEB.o bblLSProportionalEB.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblEMSeperate.o bblEMSeperate.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o chebyshevAccelerator.o chebyshevAccelerator.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o clustalFormat.o clustalFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o codon.o codon.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from codon.h:6, from codon.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from codon.h:6, from codon.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function 'static void codonUtility::readCodonUsage(const string&, Vdouble&, const codon&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function 'static void codonUtility::getCodonUsage(const sequenceContainer&, Vint&, Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In static member function 'static double codonUtility::calcCodonAdaptationIndex(const sequenceContainer&, const Vdouble&, Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o codonJC.o codonJC.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computeCounts.o computeCounts.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computeDownAlg.o computeDownAlg.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computeMarginalAlg.o computeMarginalAlg.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computePijComponent.o computePijComponent.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computeUpAlg.o computeUpAlg.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computeUpAlgFactors.o computeUpAlgFactors.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from computeUpAlgFactors.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from computeUpAlgFactors.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void computeUpAlg::fillComputeUpWithFactors(const tree&, const sequenceContainer&, int, const computePijHom&, suffStatGlobalHomPos&, std::vector&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void computeUpAlg::fillComputeUpWithFactors(const tree&, const sequenceContainer&, int, const stochasticProcess&, suffStatGlobalHomPos&, std::vector&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void computeUpAlg::fillComputeUpSpecificGlobalRateFactors(const tree&, const sequenceContainer&, int, const stochasticProcess&, suffStatGlobalHomPos&, double, std::vector&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computeSubstitutionCounts.o computeSubstitutionCounts.cpp In file included from computeSubstitutionCounts.cpp:1: computeSubstitutionCounts.h: In constructor 'computeSubstitutionCounts::computeSubstitutionCounts(const sequenceContainer&, const tree&, multipleStochasticProcess*, std::__cxx11::string&, VVVdouble&, int, double, bool)': computeSubstitutionCounts.h:57:12: warning: 'computeSubstitutionCounts::_LpostPerSpPerCat' will be initialized after [-Wreorder] VVVdouble _LpostPerSpPerCat; // _LpostPerSpPerCat[sp][rateCat][pos] ^~~~~~~~~~~~~~~~~ computeSubstitutionCounts.h:53:6: warning: 'int computeSubstitutionCounts::_simulationsIterNum' [-Wreorder] int _simulationsIterNum; ^~~~~~~~~~~~~~~~~~~ computeSubstitutionCounts.cpp:15:1: warning: when initialized here [-Wreorder] computeSubstitutionCounts::computeSubstitutionCounts(const sequenceContainer& sc, const tree& tr, multipleStochasticProcess* MultSpPtr, string& outDir, VVVdouble& LpostPerSpPerCat, const int simulationsIterNum, const MDOUBLE probCutOffSum, bool isSilent): ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from computeSubstitutionCounts.cpp:1: computeSubstitutionCounts.h:54:10: warning: 'computeSubstitutionCounts::_probCutOffSum' will be initialized after [-Wreorder] MDOUBLE _probCutOffSum; ^~~~~~~~~~~~~~ computeSubstitutionCounts.h:52:7: warning: 'bool computeSubstitutionCounts::_isSilent' [-Wreorder] bool _isSilent; ^~~~~~~~~ computeSubstitutionCounts.cpp:15:1: warning: when initialized here [-Wreorder] computeSubstitutionCounts::computeSubstitutionCounts(const sequenceContainer& sc, const tree& tr, multipleStochasticProcess* MultSpPtr, string& outDir, VVVdouble& LpostPerSpPerCat, const int simulationsIterNum, const MDOUBLE probCutOffSum, bool isSilent): ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from computeSubstitutionCounts.h:4, from computeSubstitutionCounts.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from computeSubstitutionCounts.h:4, from computeSubstitutionCounts.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void computeSubstitutionCounts::printProbabilityPerPosPerBranch(int, VVVdouble&, std::ostream&, std::ostream&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void computeSubstitutionCounts::printProbExpPerPosPerBranch(double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void computeSubstitutionCounts::printProbExpPerPosPerBranch(int, double, double, VVVdouble&, VVVdouble&, std::ostream&, std::ostream&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void computeSubstitutionCounts::run()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computePosteriorExpectationOfSubstitutions.o computePosteriorExpectationOfSubstitutions.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computePosteriorExpectationOfSubstitutions_nonReversibleSp.o computePosteriorExpectationOfSubstitutions_nonReversibleSp.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o ConversionUtils.o ConversionUtils.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o countTableComponent.o countTableComponent.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o datMatrixHolder.o datMatrixHolder.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o distanceTable.o distanceTable.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from distanceTable.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from distanceTable.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void giveDistanceTable(const distanceMethod*, const sequenceContainer&, VVdouble&, std::vector >&, const std::vector*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o distribution.o distribution.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o errorMsg.o errorMsg.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o evaluateCharacterFreq.o evaluateCharacterFreq.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fastStartTree.o fastStartTree.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from fastStartTree.cpp:15: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from fastStartTree.cpp:15: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'std::vector eliminateHalf(std::vector&, sequenceContainer&, stochasticProcess&, std::ostream&, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fastaFormat.o fastaFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o findRateOfGene.o findRateOfGene.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fromCountTableComponentToDistance.o fromCountTableComponentToDistance.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fromCountTableComponentToDistancefixRoot.o fromCountTableComponentToDistancefixRoot.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fromCountTableComponentToDistanceProp.o fromCountTableComponentToDistanceProp.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fromCountTableComponentToDistancePropEB.o fromCountTableComponentToDistancePropEB.cpp In file included from fromCountTableComponentToDistancePropEB.cpp:3: fromCountTableComponentToDistancePropEB.h: In constructor 'fromCountTableComponentToDistancePropEB::fromCountTableComponentToDistancePropEB(const std::vector >&, int, multipleStochasticProcess*, const gammaDistribution*, double, double)': fromCountTableComponentToDistancePropEB.h:29:12: warning: 'fromCountTableComponentToDistancePropEB::_nodeID' will be initialized after [-Wreorder] const int _nodeID; ^~~~~~~ fromCountTableComponentToDistancePropEB.h:28:27: warning: 'const gammaDistribution* fromCountTableComponentToDistancePropEB::_pProportionDist' [-Wreorder] const gammaDistribution* _pProportionDist; ^~~~~~~~~~~~~~~~ fromCountTableComponentToDistancePropEB.cpp:6:1: warning: when initialized here [-Wreorder] fromCountTableComponentToDistancePropEB::fromCountTableComponentToDistancePropEB( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fromQtoPt.o fromQtoPt.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from fromQtoPt.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from fromQtoPt.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'VVdouble get1PamFromCountMatrix(const std::vector&, const VVdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o generalGammaDistributionFixedCategories.o generalGammaDistributionFixedCategories.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from generalGammaDistributionFixedCategories.h:9, from generalGammaDistributionFixedCategories.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from generalGammaDistributionFixedCategories.h:9, from generalGammaDistributionFixedCategories.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void generalGammaDistributionFixedCategories::setDefaultBoundaries(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void generalGammaDistributionFixedCategories::fill_mean()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'generalGammaDistributionFixedCategories::generalGammaDistributionFixedCategories(double, double, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o gammaDistribution.o gammaDistribution.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o gammaUtilities.o gammaUtilities.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o generalGammaDistribution.o generalGammaDistribution.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from generalGammaDistribution.h:11, from generalGammaDistribution.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from generalGammaDistribution.h:11, from generalGammaDistribution.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'generalGammaDistribution::generalGammaDistribution(double, double, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void generalGammaDistribution::setGammaParameters(int, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void generalGammaDistribution::setBeta(double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void generalGammaDistribution::setAlpha(double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o getRandomWeights.o getRandomWeights.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o goldmanYangModel.o goldmanYangModel.cpp goldmanYangModel.cpp: In constructor 'goldmanYangModel::goldmanYangModel(double, double, codon&, bool)': goldmanYangModel.cpp:8:1: warning: 'goldmanYangModel::_globalV' is initialized with itself [-Winit-self] goldmanYangModel::goldmanYangModel(const MDOUBLE inV, const MDOUBLE inK,codon & inCodonAlph, const bool globalV): ^~~~~~~~~~~~~~~~ goldmanYangModel.cpp: In constructor 'goldmanYangModel::goldmanYangModel(double, double, codon&, const Vdouble&, bool)': goldmanYangModel.cpp:18:1: warning: 'goldmanYangModel::_globalV' is initialized with itself [-Winit-self] goldmanYangModel::goldmanYangModel(const MDOUBLE inV, const MDOUBLE inK, codon & inCodonAlph,const Vdouble& freq,const bool globalV): ^~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from goldmanYangModel.h:6, from goldmanYangModel.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from goldmanYangModel.h:6, from goldmanYangModel.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'goldmanYangModel::goldmanYangModel(double, double, codon&, bool)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'goldmanYangModel::goldmanYangModel(double, double, codon&, const Vdouble&, bool)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o granthamChemicalDistances.o granthamChemicalDistances.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o hky.o hky.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o simulateWithDependence.o simulateWithDependence.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from tree.h:6, from simulateWithDependence.h:29, from simulateWithDependence.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function 'double sim_with_dep::simulate_with_dependence(std::__cxx11::string, double, double, int, int, double, int, double, double, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o KH_calculation.o KH_calculation.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likeDist.o likeDist.cpp likeDist.cpp: In instantiation of 'double myNRmethod(double, double, double, regF, dF, double, int, int&) [with regF = C_evalLikeDist_d; dF = C_evalLikeDist_d2]': likeDist.cpp:274:18: required from here likeDist.cpp:210:13: warning: variable 'oldIntervalSize' set but not used [-Wunused-but-set-variable] MDOUBLE oldIntervalSize = currentIntervalSize; ^~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likeDistfixRoot.o likeDistfixRoot.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likeDistProp.o likeDistProp.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likeDistPropEB.o likeDistPropEB.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likelihoodComputation.o likelihoodComputation.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from likelihoodComputation.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from likelihoodComputation.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'double likelihoodComputation::getTreeLikelihoodFromUp2(const tree&, const sequenceContainer&, stochasticProcess&, const suffStatGlobalGamProportional&, const gammaDistribution*, VVdoubleRep&, const Vdouble*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'Vdouble likelihoodComputation::getTreeLikelihoodProportionalAllPosAlphTheSame(const tree&, const std::vector&, multipleStochasticProcess*, const gammaDistribution*, const Vdouble*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from likelihoodComputation.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from likelihoodComputation.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'double likelihoodComputation::getTreeLikelihoodFromUp2(const tree&, const sequenceContainer&, stochasticProcess&, const suffStatGlobalGamProportional&, const gammaDistribution*, VdoubleRep&, const Vdouble*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'double likelihoodComputation::getTreeLikelihoodFromUpSpecifcRates(const tree&, const sequenceContainer&, const stochasticProcess&, const suffStatGlobalHom&, VdoubleRep&, const Vdouble*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'double likelihoodComputation::getTreeLikelihoodFromUp2(const tree&, const sequenceContainer&, const stochasticProcess&, const suffStatGlobalGam&, VdoubleRep&, const Vdouble*, unObservableData*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likelihoodComputationFactors.o likelihoodComputationFactors.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o logFile.o logFile.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o maseFormat.o maseFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o molphyFormat.o molphyFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o nexusFormat.o nexusFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o nj.o nj.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from nj.h:8, from nj.cpp:6: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from nj.h:8, from nj.cpp:6: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void NJalg::UpdateDistanceTableAndCurrentNodes(std::vector&, VVdouble&, tree::nodeP, tree::nodeP, tree::nodeP, int, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void NJalg::UpdateDistanceTableAndCurrentNodes(std::vector&, VVdouble&, tree::nodeP, tree::nodeP, tree::nodeP, int, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ nj.cpp: In member function 'void NJalg::NJiterate(tree&, std::vector&, VVdouble&, njConstraint&)': nj.cpp:122:13: warning: 'minCol' may be used uninitialized in this function [-Wmaybe-uninitialized] int minRaw,minCol; ^~~~~~ nj.cpp:133:36: warning: 'minRaw' may be used uninitialized in this function [-Wmaybe-uninitialized] UpdateDistanceTableAndCurrentNodes(currentNodes,distanceTable,nodeI,nodeJ,theNewNode,minRaw,minCol); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nj.cpp: In member function 'void NJalg::NJiterate(tree&, std::vector&, VVdouble&)': nj.cpp:100:41: warning: 'minCol' may be used uninitialized in this function [-Wmaybe-uninitialized] tree::nodeP nodeJ = currentNodes[minCol]; ^ nj.cpp:99:41: warning: 'minRaw' may be used uninitialized in this function [-Wmaybe-uninitialized] tree::nodeP nodeI = currentNodes[minRaw]; ^ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o njConstrain.o njConstrain.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o nucJC.o nucJC.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o nucleotide.o nucleotide.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o numRec.o numRec.cpp numRec.cpp:306:2: warning: "/*" within comment [-Wcomment] //* for (i=1;i >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from numRec.cpp:6: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'double performKSTest(const uniformDistribution&, Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from numRec.h:13, from numRec.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from numRec.h:13, from numRec.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void houseHolder(VVdouble&, VVdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o Parameters.o Parameters.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o phylipFormat.o phylipFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o pijAccelerator.o pijAccelerator.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o readDatMatrix.o readDatMatrix.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from readDatMatrix.h:6, from readDatMatrix.cpp:14: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from readDatMatrix.h:6, from readDatMatrix.cpp:14: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'VVdouble fromWagSandFreqToQ(const VVdouble&, const Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void readDatMatrixFromFile(const string&, VVdouble&, Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void readDatMatrixFromString(const string&, VVdouble&, Vdouble&, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void pupAll::fillMatrices(const string&, const Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o readTree.o readTree.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o recognizeFormat.o recognizeFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o replacementModel.o replacementModel.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o searchStatus.o searchStatus.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o seqContainerTreeMap.o seqContainerTreeMap.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o sequence.o sequence.cpp sequence.cpp: In constructor 'sequence::sequence(const sequence&, const alphabet*)': sequence.cpp:76:28: warning: suggest parentheses around '&&' within '||' [-Wparentheses] || (inAlph->size() == 4) && (other._alphabet->size()%4 == 0)) ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o sequenceContainer.o sequenceContainer.cpp sequenceContainer.cpp: In member function 'void sequenceContainer::removeGapPositions()': sequenceContainer.cpp:187:7: warning: variable 'gapCol' set but not used [-Wunused-but-set-variable] bool gapCol; ^~~~~~ sequenceContainer.cpp: In member function 'void sequenceContainer::removeGapPositionsAllSeqs()': sequenceContainer.cpp:199:7: warning: variable 'gapCol' set but not used [-Wunused-but-set-variable] bool gapCol; ^~~~~~ sequenceContainer.cpp: In member function 'int sequenceContainer::getNumOfOccurancesPerPos(int, char)': sequenceContainer.cpp:452:12: warning: unused variable 'len' [-Wunused-variable] const int len = _seqDataVec[0].seqLen(); ^~~ sequenceContainer.cpp: In member function 'std::vector > sequenceContainer::getSeqNamesThatMatchPos(int, char)': sequenceContainer.cpp:467:12: warning: unused variable 'len' [-Wunused-variable] const int len = _seqDataVec[0].seqLen(); ^~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o simulateTree.o simulateTree.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o siteSpecificRate.o siteSpecificRate.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o someUtil.o someUtil.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from someUtil.cpp:9: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from someUtil.cpp:9: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from someUtil.cpp:9: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = vecElem; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from someUtil.cpp:9: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'double computeFDRthreshold(Vdouble&, double, bool)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'double computeMedian(const std::vector&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'double computeQuantileFrac(const std::vector&, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'double computeQuantile(const std::vector&, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'double orderVec(const std::vector&, std::vector&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void orderRankNoTies(const std::vector&, std::vector&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void orderVec(const Vdouble&, std::vector >&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o split.o split.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o splitMap.o splitMap.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o splitTreeUtil.o splitTreeUtil.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o stochasticProcess.o stochasticProcess.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o suffStatComponent.o suffStatComponent.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o talRandom.o talRandom.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o tree.o tree.cpp tree.cpp: In constructor 'tree::tree(const string&)': tree.cpp:180:4: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (in.is_open()) ^~ tree.cpp:182:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' create_names_to_internal_nodes(); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o treeIt.o treeIt.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o treeUtil.o treeUtil.cpp treeUtil.cpp: In function 'std::vector getNexusTreesFromFile(const string&)': treeUtil.cpp:371:25: warning: variable 'itStrStart' set but not used [-Wunused-but-set-variable] string::const_iterator itStrStart = it->begin(); ^~~~~~~~~~ treeUtil.cpp:372:25: warning: variable 'itStrEnd' set but not used [-Wunused-but-set-variable] string::const_iterator itStrEnd = it->end(); ^~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o uniDistribution.o uniDistribution.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o uniformDistribution.o uniformDistribution.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from uniformDistribution.h:22, from uniformDistribution.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from uniformDistribution.h:22, from uniformDistribution.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void uniformDistribution::setUniformParameters(int, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'uniformDistribution::uniformDistribution(int, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void uniformDistribution::change_number_of_categories(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o cmdline2EvolObjs.o cmdline2EvolObjs.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o generalGammaDistributionLaguerre.o generalGammaDistributionLaguerre.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from generalGammaDistributionLaguerre.h:26, from generalGammaDistributionLaguerre.cpp:2: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'virtual void generalGammaDistributionLaguerre::fillRatesAndProbs(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In constructor 'generalGammaDistributionLaguerre::generalGammaDistributionLaguerre(double, double, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'virtual void generalGammaDistributionLaguerre::setGammaParameters(int, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o gammaDistributionLaguerre.o gammaDistributionLaguerre.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o GLaguer.o GLaguer.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from GLaguer.cpp:2: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from GLaguer.cpp:2: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'GLaguer::GLaguer(int, double, Vdouble&, Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void GLaguer::GetPhylipLaguer(int, double, Vdouble&, Vdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void GLaguer::gaulag(Vdouble&, Vdouble&, double, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o givenRatesMLDistance.o givenRatesMLDistance.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o distanceBasedSeqs2Tree.o distanceBasedSeqs2Tree.cpp In file included from distanceBasedSeqs2Tree.cpp:12: bestGtrModelParams.h: In constructor 'C_evalGTRParamProportional::C_evalGTRParamProportional(GTRParam, const tree&, const sequenceContainer&, stochasticProcess&, const gammaDistribution*, const Vdouble*)': bestGtrModelParams.h:175:21: warning: 'C_evalGTRParamProportional::_sp' will be initialized after [-Wreorder] stochasticProcess& _sp; ^~~ bestGtrModelParams.h:173:27: warning: 'const gammaDistribution* C_evalGTRParamProportional::_pProportionDist' [-Wreorder] const gammaDistribution* _pProportionDist; ^~~~~~~~~~~~~~~~ bestGtrModelParams.h:162:3: warning: when initialized here [-Wreorder] C_evalGTRParamProportional( const GTRParam param, ^~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o posteriorDistance.o posteriorDistance.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o pairwiseGammaDistance.o pairwiseGammaDistance.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o doubleRep.o doubleRep.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o logRep.o logRep.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o indel.o indel.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o indelModel.o indelModel.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o mulAlphabet.o mulAlphabet.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o replacementModelSSRV.o replacementModelSSRV.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from replacementModel.h:6, from replacementModelSSRV.h:6, from replacementModelSSRV.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from replacementModel.h:6, from replacementModelSSRV.h:6, from replacementModelSSRV.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void replacementModelSSRV::updateQ()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'replacementModelSSRV::replacementModelSSRV(const distribution*, const replacementModel*, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o stochasticProcessSSRV.o stochasticProcessSSRV.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestAlphaAndNu.o bestAlphaAndNu.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o C_evalParamUSSRV.o C_evalParamUSSRV.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o matrixUtils.o matrixUtils.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from matrixUtils.h:4, from matrixUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from matrixUtils.h:4, from matrixUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'Vdouble getSubDiagonalFromMatrix(VVdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void appendVectors(VVdouble&, const VVdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'Vdouble getDiagonalFromMatrix(VVdouble&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from matrixUtils.h:4, from matrixUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function 'void readDoubleVecFromFile(Vdouble&, std::__cxx11::string)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function 'void readMatrixFromFile(VVdouble&, std::__cxx11::string)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o betaOmegaDistribution.o betaOmegaDistribution.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o betaUtilities.o betaUtilities.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o betaDistribution.o betaDistribution.cpp In file included from betaDistribution.cpp:3: betaDistribution.h: In copy constructor 'betaDistribution::betaDistribution(const betaDistribution&)': betaDistribution.h:54:18: warning: 'betaDistribution::_boundary' will be initialized after [-Wreorder] vector _boundary; ^~~~~~~~~ betaDistribution.h:47:10: warning: 'double betaDistribution::_alpha' [-Wreorder] MDOUBLE _alpha; ^~~~~~ betaDistribution.cpp:23:1: warning: when initialized here [-Wreorder] betaDistribution::betaDistribution(const betaDistribution& other) : ^~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from betaDistribution.h:10, from betaDistribution.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from betaDistribution.h:10, from betaDistribution.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'betaDistribution::betaDistribution(double, double, int, betaDistribution::discretizationType)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void betaDistribution::setBetaParameters(int, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void betaDistribution::change_number_of_categories(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void betaDistribution::setAlpha(double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void betaDistribution::setBeta(double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o geneticCodeHolder.o geneticCodeHolder.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o samplingSequences.o samplingSequences.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblEM2USSRV.o bblEM2USSRV.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestParamUSSRV.o bestParamUSSRV.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likeDist2USSRV.o likeDist2USSRV.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o ussrvModel.o ussrvModel.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likelihoodComputation2USSRV.o likelihoodComputation2USSRV.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from likelihoodComputation2USSRV.h:5, from likelihoodComputation2USSRV.cpp:2: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function 'double likelihoodComputation2USSRV::getTreeLikelihoodFromUp2(const tree&, const sequenceContainer&, const sequenceContainer&, const ussrvModel&, const suffStatGlobalGam&, const suffStatGlobalHom&, VdoubleRep&, const Vdouble*)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fromCountTableComponentToDistance2USSRV.o fromCountTableComponentToDistance2USSRV.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o normalDist.o normalDist.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o tamura92.o tamura92.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestTamura92param.o bestTamura92param.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from bestTamura92param.h:6, from bestTamura92param.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from bestTamura92param.h:6, from bestTamura92param.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'bestTamura92ParamAlphaAndBBLProportional::bestTamura92ParamAlphaAndBBLProportional(tree&, std::vector&, multipleStochasticProcess*, gammaDistribution*, Vdouble, Vdouble, Vdouble, double, double, double, double, int, int, bool, bool, std::__cxx11::string, bool, bool, const Vdouble*, double, double, double, double, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o phylipSequentialFormat.o phylipSequentialFormat.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o simulateCodonsJumps.o simulateCodonsJumps.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from simulateJumpsAbstract.h:4, from simulateCodonsJumps.h:4, from simulateCodonsJumps.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from simulateJumpsAbstract.h:4, from simulateCodonsJumps.h:4, from simulateCodonsJumps.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void simulateCodonsJumps::init()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o simulateJumpsAbstract.o simulateJumpsAbstract.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o ssrvDistanceSeqs2Tree.o ssrvDistanceSeqs2Tree.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o multipleStochasticProcess.o multipleStochasticProcess.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o distributionPlusInvariant.o distributionPlusInvariant.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o extremeValDistribution.o extremeValDistribution.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o gammaDistributionFixedCategories.o gammaDistributionFixedCategories.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o generalGammaDistributionPlusInvariant.o generalGammaDistributionPlusInvariant.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o gammaDistributionPlusInvariant.o gammaDistributionPlusInvariant.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o distributionPlusCategory.o distributionPlusCategory.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o simulateJumps.o simulateJumps.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from simulateJumpsAbstract.h:4, from simulateJumps.h:4, from simulateJumps.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from simulateJumpsAbstract.h:4, from simulateJumps.h:4, from simulateJumps.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void simulateJumps::init()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o computeJumps.o computeJumps.cpp In file included from computeJumps.cpp:1: computeJumps.h: In constructor 'computeJumps::gFunc::gFunc(double, double, double)': computeJumps.h:59:11: warning: 'computeJumps::gFunc::_Lambda2' will be initialized after [-Wreorder] MDOUBLE _Lambda2; ^~~~~~~~ computeJumps.h:57:11: warning: 'double computeJumps::gFunc::_r' [-Wreorder] MDOUBLE _r; ^~ computeJumps.cpp:256:1: warning: when initialized here [-Wreorder] computeJumps::gFunc::gFunc(const MDOUBLE Lambda1, const MDOUBLE Lambda2 , const MDOUBLE r) ^~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o seqeuncesFilter.o seqeuncesFilter.cpp seqeuncesFilter.cpp: In static member function 'static void seqeuncesFilter::removeShortAndLongSequences(sequenceContainer&, int, int)': seqeuncesFilter.cpp:141:18: warning: unused variable 'pAlph' [-Wunused-variable] const alphabet* pAlph = sc.getAlphabet(); ^~~~~ In file included from seqeuncesFilter.h:6, from seqeuncesFilter.cpp:1: sequenceContainer.h: In static member function 'static void seqeuncesFilter::removeSequencesWithInserts(sequenceContainer&, const sequenceContainer&, int, const string&, std::__cxx11::string)': sequenceContainer.h:31:81: warning: 'refID' may be used uninitialized in this function [-Wmaybe-uninitialized] const sequence& operator[](const int id) const {return _seqDataVec[_id2place[id]];} ^ seqeuncesFilter.cpp:165:6: note: 'refID' was declared here int refID; ^~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o optGammaMixtureLS.o optGammaMixtureLS.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o mixtureDistribution.o mixtureDistribution.cpp mixtureDistribution.cpp: In member function 'virtual const double mixtureDistribution::rates(int) const': mixtureDistribution.cpp:210:6: warning: 'componentNum' may be used uninitialized in this function [-Wmaybe-uninitialized] int componentNum, categoryInComponent, totalCat = 0; ^~~~~~~~~~~~ mixtureDistribution.cpp:221:41: warning: 'categoryInComponent' may be used uninitialized in this function [-Wmaybe-uninitialized] return _components[componentNum]->rates(categoryInComponent) * _globalRate; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mixtureDistribution.cpp: In member function 'virtual const double mixtureDistribution::ratesProb(int) const': mixtureDistribution.cpp:228:6: warning: 'componentNum' may be used uninitialized in this function [-Wmaybe-uninitialized] int componentNum, categoryInComponent, totalCat = 0; ^~~~~~~~~~~~ In file included from mixtureDistribution.h:12, from mixtureDistribution.cpp:1: generalGammaDistribution.h:28:73: warning: 'categoryInComponent' may be used uninitialized in this function [-Wmaybe-uninitialized] virtual const MDOUBLE ratesProb(const int i) const {return _ratesProb[i];} ^ mixtureDistribution.cpp:228:20: note: 'categoryInComponent' was declared here int componentNum, categoryInComponent, totalCat = 0; ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from mixtureDistribution.h:11, from mixtureDistribution.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from mixtureDistribution.h:11, from mixtureDistribution.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void mixtureDistribution::change_number_of_components(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o suffStatGammaMixture.o suffStatGammaMixture.cpp suffStatGammaMixture.cpp: In member function 'void suffStatGammaMixture::computeStatistics()': suffStatGammaMixture.cpp:123:12: warning: variable 'Exp_Rk' set but not used [-Wunused-but-set-variable] MDOUBLE Exp_Rk, Exp_LogRk, sum; ^~~~~~ suffStatGammaMixture.cpp: In member function 'double suffStatGammaMixture::computeQ()': suffStatGammaMixture.cpp:224:11: warning: unused variable 'first' [-Wunused-variable] MDOUBLE first = _MkVec[comp] * log(P_k); ^~~~~ suffStatGammaMixture.cpp:225:11: warning: unused variable 'second' [-Wunused-variable] MDOUBLE second = _MkVec[comp] * alpha_k*log(beta_k); ^~~~~~ suffStatGammaMixture.cpp:226:11: warning: unused variable 'third' [-Wunused-variable] MDOUBLE third = -_MkVec[comp] * gammln(alpha_k); ^~~~~ suffStatGammaMixture.cpp:227:11: warning: unused variable 'fourth' [-Wunused-variable] MDOUBLE fourth = -_AkVec[comp]*beta_k; ^~~~~~ suffStatGammaMixture.cpp:228:11: warning: unused variable 'fifth' [-Wunused-variable] MDOUBLE fifth = _BkVec[comp]*(alpha_k-1.0); ^~~~~ suffStatGammaMixture.cpp:216:10: warning: variable 'res2' set but not used [-Wunused-but-set-variable] MDOUBLE res2 = 0.0; ^~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from suffStatGammaMixture.h:16, from suffStatGammaMixture.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from suffStatGammaMixture.h:16, from suffStatGammaMixture.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void suffStatGammaMixture::allocatePlaceForSuffStat()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o GamMixtureOptimizer.o GamMixtureOptimizer.cpp In file included from GamMixtureOptimizer.cpp:3: optGammaMixtureEM.h: In member function 'double C_evalAlphaEM::diGammaPlus(double) const': optGammaMixtureEM.h:76:11: warning: unused variable 'res1' [-Wunused-variable] MDOUBLE res1 = log(x) + (1/(2*x)) - (1/(12*x*x)) + (1/(120*pow(x, 4))) - (1/(252*pow(x, 6))); ^~~~ optGammaMixtureEM.h: In member function 'double C_evalAlphaEM::diGamma(double) const': optGammaMixtureEM.h:87:11: warning: unused variable 'debugRes' [-Wunused-variable] MDOUBLE debugRes = log(x) - (1/(2*x)) - (1/(12*x*x)) + (1/(120*pow(x, 4))) - (1/(252*pow(x, 6))) + (1/(240*pow(x, 8))) - (1/(132*pow(x, 10))); ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from GamMixtureOptimizer.cpp:7: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from GamMixtureOptimizer.cpp:7: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In member function 'double GamMixtureOptimizer::findBestParamManyStarts(Vint, Vint, std::vector, Vdouble, const Vdouble*, std::ofstream*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o optGammaMixtureEM.o optGammaMixtureEM.cpp In file included from optGammaMixtureEM.cpp:1: optGammaMixtureEM.h: In member function 'double C_evalAlphaEM::diGammaPlus(double) const': optGammaMixtureEM.h:76:11: warning: unused variable 'res1' [-Wunused-variable] MDOUBLE res1 = log(x) + (1/(2*x)) - (1/(12*x*x)) + (1/(120*pow(x, 4))) - (1/(252*pow(x, 6))); ^~~~ optGammaMixtureEM.h: In member function 'double C_evalAlphaEM::diGamma(double) const': optGammaMixtureEM.h:87:11: warning: unused variable 'debugRes' [-Wunused-variable] MDOUBLE debugRes = log(x) - (1/(2*x)) - (1/(12*x*x)) + (1/(120*pow(x, 4))) - (1/(252*pow(x, 6))) + (1/(240*pow(x, 8))) - (1/(132*pow(x, 10))); ^~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from optGammaMixtureEM.cpp:7: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from optGammaMixtureEM.cpp:7: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from optGammaMixtureEM.h:11, from optGammaMixtureEM.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const mixtureDistribution&}; _Tp = mixtureDistribution; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {mixtureDistribution}; _Tp = mixtureDistribution; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from optGammaMixtureEM.h:11, from optGammaMixtureEM.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'double optGammaMixtureEM::findBestParamManyStarts(int, int, int, int, double, double, std::ofstream*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from optGammaMixtureEM.h:11, from optGammaMixtureEM.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from optGammaMixtureEM.cpp:7: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o gainLossAlphabet.o gainLossAlphabet.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o wYangModel.o wYangModel.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from replacementModel.h:6, from wYangModel.h:4, from wYangModel.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from replacementModel.h:6, from wYangModel.h:4, from wYangModel.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'wYangModel::wYangModel(double, double, bool, codon*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'wYangModel::wYangModel(double, double, const Vdouble&, bool, codon*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o codonUtils.o codonUtils.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from codonUtils.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from codonUtils.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from nucleotide.h:7, from codonUtils.h:5, from codonUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from nucleotide.h:7, from codonUtils.h:5, from codonUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'Vdouble freqCodonF3x4(const sequenceContainer&, codon*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from nucleotide.h:7, from codonUtils.h:5, from codonUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from nucleotide.h:7, from codonUtils.h:5, from codonUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void kaks2Color(const Vdouble&, const Vdouble&, const sequence&, std::__cxx11::string, codon*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from nucleotide.h:7, from codonUtils.h:5, from codonUtils.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from codonUtils.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likelihoodComputation2Codon.o likelihoodComputation2Codon.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from likelihoodComputation2Codon.h:6, from likelihoodComputation2Codon.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In function 'double likelihoodComputation2Codon::getTreeLikelihoodFromUp2(const tree&, const sequenceContainer&, const stochasticProcess&, const suffStatGlobalGam&, Vdouble&, const distribution*, const Vdouble*)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likeDist2Codon.o likeDist2Codon.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o unObservableData.o unObservableData.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o likelihoodComputationGL.o likelihoodComputationGL.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o threeStateModel.o threeStateModel.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o threeStateAlphabet.o threeStateAlphabet.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o oneTwoMoreModel.o oneTwoMoreModel.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o betaDistributionFixedCategories.o betaDistributionFixedCategories.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from betaDistributionFixedCategories.h:9, from betaDistributionFixedCategories.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from betaDistributionFixedCategories.h:9, from betaDistributionFixedCategories.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void betaDistributionFixedCategories::setDefaultBoundaries(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'virtual void betaDistributionFixedCategories::fill_mean()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'betaDistributionFixedCategories::betaDistributionFixedCategories()': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'betaDistributionFixedCategories::betaDistributionFixedCategories(double, double, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o betaDistributionFixedCategoriesWithOmegaUniform.o betaDistributionFixedCategoriesWithOmegaUniform.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bblEM2codon.o bblEM2codon.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestAlphaAndK.o bestAlphaAndK.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o fromCountTableComponentToDistance2Codon.o fromCountTableComponentToDistance2Codon.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o gtrModel.o gtrModel.cpp In file included from gtrModel.cpp:1: gtrModel.h: In constructor 'gtrModel::gtrModel(const Vdouble&, double, double, double, double, double, double)': gtrModel.h:54:10: warning: 'gtrModel::_g2t' will be initialized after [-Wreorder] MDOUBLE _g2t; ^~~~ gtrModel.h:47:10: warning: 'Vdouble gtrModel::_freq' [-Wreorder] Vdouble _freq; ^~~~~ gtrModel.cpp:5:1: warning: when initialized here [-Wreorder] gtrModel::gtrModel(const Vdouble& freq, ^~~~~~~~ gtrModel.cpp: In member function 'double gtrModel::get_a2c() const': gtrModel.cpp:139:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ gtrModel.cpp: In member function 'double gtrModel::get_a2g() const': gtrModel.cpp:153:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ gtrModel.cpp: In member function 'double gtrModel::get_a2t() const': gtrModel.cpp:167:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ gtrModel.cpp: In member function 'double gtrModel::get_c2g() const': gtrModel.cpp:181:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ gtrModel.cpp: In member function 'double gtrModel::get_c2t() const': gtrModel.cpp:195:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ gtrModel.cpp: In member function 'double gtrModel::get_g2t() const': gtrModel.cpp:209:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from replacementModel.h:6, from gtrModel.h:4, from gtrModel.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from replacementModel.h:6, from gtrModel.h:4, from gtrModel.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'gtrModel::gtrModel(const Vdouble&, double, double, double, double, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o bestGtrModelParams.o bestGtrModelParams.cpp In file included from bestGtrModelParams.cpp:3: bestGtrModelParams.h: In constructor 'C_evalGTRParamProportional::C_evalGTRParamProportional(GTRParam, const tree&, const sequenceContainer&, stochasticProcess&, const gammaDistribution*, const Vdouble*)': bestGtrModelParams.h:175:21: warning: 'C_evalGTRParamProportional::_sp' will be initialized after [-Wreorder] stochasticProcess& _sp; ^~~ bestGtrModelParams.h:173:27: warning: 'const gammaDistribution* C_evalGTRParamProportional::_pProportionDist' [-Wreorder] const gammaDistribution* _pProportionDist; ^~~~~~~~~~~~~~~~ bestGtrModelParams.h:162:3: warning: when initialized here [-Wreorder] C_evalGTRParamProportional( const GTRParam param, ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from bestGtrModelParams.h:6, from bestGtrModelParams.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from bestGtrModelParams.h:6, from bestGtrModelParams.cpp:3: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'bestGtrModelProportional::bestGtrModelProportional(tree&, std::vector&, multipleStochasticProcess*, gammaDistribution*, Vdouble, Vdouble, Vdouble, Vdouble, Vdouble, Vdouble, Vdouble, double, double, double, double, int, int, bool, bool, std::__cxx11::string, bool, bool, const Vdouble*, double, double, double, double, double)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o simulateRateShiftJumps.o simulateRateShiftJumps.cpp In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from definitions.h:18, from simulateJumpsAbstract.h:4, from simulateRateShiftJumps.h:4, from simulateRateShiftJumps.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from definitions.h:18, from simulateJumpsAbstract.h:4, from simulateRateShiftJumps.h:4, from simulateRateShiftJumps.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void simulateRateShiftJumps::init(std::vector)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -DLOG -c -o integerAlphabet.o integerAlphabet.cpp ar rv libEvolTree.a AddLog.o NNiProp.o NNiSep.o Nni.o aaJC.o allTrees.o allTreesSeparateModel.o alphabet.o amino.o bestAlpha.o bestAlphaManyTrees.o bestHKYparam.o bootstrap.o bblEM.o bblEMfixRoot.o bblEMProprtional.o bblEMProportionalEB.o bblLSProportionalEB.o bblEMSeperate.o chebyshevAccelerator.o clustalFormat.o codon.o codonJC.o computeCounts.o computeDownAlg.o computeMarginalAlg.o computePijComponent.o computeUpAlg.o computeUpAlgFactors.o computeSubstitutionCounts.o computePosteriorExpectationOfSubstitutions.o computePosteriorExpectationOfSubstitutions_nonReversibleSp.o ConversionUtils.o countTableComponent.o datMatrixHolder.o distanceTable.o distribution.o errorMsg.o evaluateCharacterFreq.o fastStartTree.o fastaFormat.o findRateOfGene.o fromCountTableComponentToDistance.o fromCountTableComponentToDistancefixRoot.o fromCountTableComponentToDistanceProp.o fromCountTableComponentToDistancePropEB.o fromQtoPt.o generalGammaDistributionFixedCategories.o gammaDistribution.o gammaUtilities.o generalGammaDistribution.o getRandomWeights.o goldmanYangModel.o granthamChemicalDistances.o hky.o simulateWithDependence.o KH_calculation.o likeDist.o likeDistfixRoot.o likeDistProp.o likeDistPropEB.o likelihoodComputation.o likelihoodComputationFactors.o logFile.o maseFormat.o molphyFormat.o nexusFormat.o nj.o njConstrain.o nucJC.o nucleotide.o numRec.o Parameters.o phylipFormat.o pijAccelerator.o readDatMatrix.o readTree.o recognizeFormat.o replacementModel.o searchStatus.o seqContainerTreeMap.o sequence.o sequenceContainer.o simulateTree.o siteSpecificRate.o someUtil.o split.o splitMap.o splitTreeUtil.o stochasticProcess.o suffStatComponent.o talRandom.o tree.o treeIt.o treeUtil.o uniDistribution.o uniformDistribution.o cmdline2EvolObjs.o generalGammaDistributionLaguerre.o gammaDistributionLaguerre.o GLaguer.o givenRatesMLDistance.o distanceBasedSeqs2Tree.o posteriorDistance.o pairwiseGammaDistance.o doubleRep.o logRep.o indel.o indelModel.o mulAlphabet.o replacementModelSSRV.o stochasticProcessSSRV.o bestAlphaAndNu.o C_evalParamUSSRV.o matrixUtils.o betaOmegaDistribution.o betaUtilities.o betaDistribution.o geneticCodeHolder.o samplingSequences.o bblEM2USSRV.o bestParamUSSRV.o likeDist2USSRV.o ussrvModel.o likelihoodComputation2USSRV.o fromCountTableComponentToDistance2USSRV.o normalDist.o tamura92.o bestTamura92param.o phylipSequentialFormat.o simulateCodonsJumps.o simulateJumpsAbstract.o ssrvDistanceSeqs2Tree.o multipleStochasticProcess.o distributionPlusInvariant.o extremeValDistribution.o gammaDistributionFixedCategories.o generalGammaDistributionPlusInvariant.o gammaDistributionPlusInvariant.o distributionPlusCategory.o simulateJumps.o computeJumps.o seqeuncesFilter.o optGammaMixtureLS.o mixtureDistribution.o suffStatGammaMixture.o GamMixtureOptimizer.o optGammaMixtureEM.o gainLossAlphabet.o wYangModel.o codonUtils.o likelihoodComputation2Codon.o likeDist2Codon.o unObservableData.o likelihoodComputationGL.o threeStateModel.o threeStateAlphabet.o oneTwoMoreModel.o betaDistributionFixedCategories.o betaDistributionFixedCategoriesWithOmegaUniform.o bblEM2codon.o bestAlphaAndK.o fromCountTableComponentToDistance2Codon.o gtrModel.o bestGtrModelParams.o simulateRateShiftJumps.o integerAlphabet.o ar: creating libEvolTree.a a - AddLog.o a - NNiProp.o a - NNiSep.o a - Nni.o a - aaJC.o a - allTrees.o a - allTreesSeparateModel.o a - alphabet.o a - amino.o a - bestAlpha.o a - bestAlphaManyTrees.o a - bestHKYparam.o a - bootstrap.o a - bblEM.o a - bblEMfixRoot.o a - bblEMProprtional.o a - bblEMProportionalEB.o a - bblLSProportionalEB.o a - bblEMSeperate.o a - chebyshevAccelerator.o a - clustalFormat.o a - codon.o a - codonJC.o a - computeCounts.o a - computeDownAlg.o a - computeMarginalAlg.o a - computePijComponent.o a - computeUpAlg.o a - computeUpAlgFactors.o a - computeSubstitutionCounts.o a - computePosteriorExpectationOfSubstitutions.o a - computePosteriorExpectationOfSubstitutions_nonReversibleSp.o a - ConversionUtils.o a - countTableComponent.o a - datMatrixHolder.o a - distanceTable.o a - distribution.o a - errorMsg.o a - evaluateCharacterFreq.o a - fastStartTree.o a - fastaFormat.o a - findRateOfGene.o a - fromCountTableComponentToDistance.o a - fromCountTableComponentToDistancefixRoot.o a - fromCountTableComponentToDistanceProp.o a - fromCountTableComponentToDistancePropEB.o a - fromQtoPt.o a - generalGammaDistributionFixedCategories.o a - gammaDistribution.o a - gammaUtilities.o a - generalGammaDistribution.o a - getRandomWeights.o a - goldmanYangModel.o a - granthamChemicalDistances.o a - hky.o a - simulateWithDependence.o a - KH_calculation.o a - likeDist.o a - likeDistfixRoot.o a - likeDistProp.o a - likeDistPropEB.o a - likelihoodComputation.o a - likelihoodComputationFactors.o a - logFile.o a - maseFormat.o a - molphyFormat.o a - nexusFormat.o a - nj.o a - njConstrain.o a - nucJC.o a - nucleotide.o a - numRec.o a - Parameters.o a - phylipFormat.o a - pijAccelerator.o a - readDatMatrix.o a - readTree.o a - recognizeFormat.o a - replacementModel.o a - searchStatus.o a - seqContainerTreeMap.o a - sequence.o a - sequenceContainer.o a - simulateTree.o a - siteSpecificRate.o a - someUtil.o a - split.o a - splitMap.o a - splitTreeUtil.o a - stochasticProcess.o a - suffStatComponent.o a - talRandom.o a - tree.o a - treeIt.o a - treeUtil.o a - uniDistribution.o a - uniformDistribution.o a - cmdline2EvolObjs.o a - generalGammaDistributionLaguerre.o a - gammaDistributionLaguerre.o a - GLaguer.o a - givenRatesMLDistance.o a - distanceBasedSeqs2Tree.o a - posteriorDistance.o a - pairwiseGammaDistance.o a - doubleRep.o a - logRep.o a - indel.o a - indelModel.o a - mulAlphabet.o a - replacementModelSSRV.o a - stochasticProcessSSRV.o a - bestAlphaAndNu.o a - C_evalParamUSSRV.o a - matrixUtils.o a - betaOmegaDistribution.o a - betaUtilities.o a - betaDistribution.o a - geneticCodeHolder.o a - samplingSequences.o a - bblEM2USSRV.o a - bestParamUSSRV.o a - likeDist2USSRV.o a - ussrvModel.o a - likelihoodComputation2USSRV.o a - fromCountTableComponentToDistance2USSRV.o a - normalDist.o a - tamura92.o a - bestTamura92param.o a - phylipSequentialFormat.o a - simulateCodonsJumps.o a - simulateJumpsAbstract.o a - ssrvDistanceSeqs2Tree.o a - multipleStochasticProcess.o a - distributionPlusInvariant.o a - extremeValDistribution.o a - gammaDistributionFixedCategories.o a - generalGammaDistributionPlusInvariant.o a - gammaDistributionPlusInvariant.o a - distributionPlusCategory.o a - simulateJumps.o a - computeJumps.o a - seqeuncesFilter.o a - optGammaMixtureLS.o a - mixtureDistribution.o a - suffStatGammaMixture.o a - GamMixtureOptimizer.o a - optGammaMixtureEM.o a - gainLossAlphabet.o a - wYangModel.o a - codonUtils.o a - likelihoodComputation2Codon.o a - likeDist2Codon.o a - unObservableData.o a - likelihoodComputationGL.o a - threeStateModel.o a - threeStateAlphabet.o a - oneTwoMoreModel.o a - betaDistributionFixedCategories.o a - betaDistributionFixedCategoriesWithOmegaUniform.o a - bblEM2codon.o a - bestAlphaAndK.o a - fromCountTableComponentToDistance2Codon.o a - gtrModel.o a - bestGtrModelParams.o a - simulateRateShiftJumps.o a - integerAlphabet.o ranlib libEvolTree.a make[3]: Leaving directory '/<>/libs/phylogeny' make[2]: Leaving directory '/<>/libs' cd programs;make all make[2]: Entering directory '/<>/programs' cd fastml && make all make[3]: Entering directory '/<>/programs/fastml' making depend arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o fastml.o fastml.cpp In file included from bbAlg.h:8, from fastml.cpp:254: bbReport.h: In constructor 'BandBReportAllPos::BandBReportAllPos(const string&, int)': bbReport.h:14:16: warning: 'BandBReportAllPos::_reportFileName' will be initialized after [-Wreorder] const string& _reportFileName; ^~~~~~~~~~~~~~~ bbReport.h:13:12: warning: 'const int BandBReportAllPos::_minNumOfNodesToVisit' [-Wreorder] const int _minNumOfNodesToVisit; ^~~~~~~~~~~~~~~~~~~~~ bbReport.h:10:11: warning: when initialized here [-Wreorder] explicit BandBReportAllPos(const string& reportFileName, int minNumOfNodesToVisit) ^~~~~~~~~~~~~~~~~ In file included from mainbb.h:4, from fastml.cpp:1: bb_options.h: At global scope: bb_options.h:62:21: warning: 'const string usege_splash_screen()' defined but not used [-Wunused-function] static const string usege_splash_screen() { ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bbAlg.o bbAlg.cpp In file included from bbAlg.h:8, from bbAlg.cpp:1: bbReport.h: In constructor 'BandBReportAllPos::BandBReportAllPos(const string&, int)': bbReport.h:14:16: warning: 'BandBReportAllPos::_reportFileName' will be initialized after [-Wreorder] const string& _reportFileName; ^~~~~~~~~~~~~~~ bbReport.h:13:12: warning: 'const int BandBReportAllPos::_minNumOfNodesToVisit' [-Wreorder] const int _minNumOfNodesToVisit; ^~~~~~~~~~~~~~~~~~~~~ bbReport.h:10:11: warning: when initialized here [-Wreorder] explicit BandBReportAllPos(const string& reportFileName, int minNumOfNodesToVisit) ^~~~~~~~~~~~~~~~~ In file included from bbAlg.cpp:1: bbAlg.h: In constructor 'bbAlg::bbAlg(const tree&, std::vector&, const sequenceContainer&, bbAlg::boundMethod, const string&, double, const distribution*)': bbAlg.h:61:16: warning: 'bbAlg::_reportFileName' will be initialized after [-Wreorder] const string& _reportFileName; ^~~~~~~~~~~~~~~ bbAlg.h:60:20: warning: 'BandBReportAllPos bbAlg::BandBReportAllPos1' [-Wreorder] BandBReportAllPos BandBReportAllPos1; // report for all positions. ^~~~~~~~~~~~~~~~~~ bbAlg.cpp:7:1: warning: when initialized here [-Wreorder] bbAlg::bbAlg(const tree& et, ^~~~~ In file included from bbAlg.cpp:1: bbAlg.h:60:20: warning: 'bbAlg::BandBReportAllPos1' will be initialized after [-Wreorder] BandBReportAllPos BandBReportAllPos1; // report for all positions. ^~~~~~~~~~~~~~~~~~ bbAlg.h:29:14: warning: 'const tree& bbAlg::_et' [-Wreorder] const tree& _et; ^~~ bbAlg.cpp:7:1: warning: when initialized here [-Wreorder] bbAlg::bbAlg(const tree& et, ^~~~~ In file included from bbNodeOrderAlg.h:5, from bbAlg.h:5, from bbAlg.cpp:1: bb_options.h: At global scope: bb_options.h:62:21: warning: 'const string usege_splash_screen()' defined but not used [-Wunused-function] static const string usege_splash_screen() { ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ../../libs/phylogeny/definitions.h:18, from ../../libs/phylogeny/computePijComponent.h:6, from bbAlg.h:4, from bbAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ../../libs/phylogeny/definitions.h:18, from ../../libs/phylogeny/computePijComponent.h:6, from bbAlg.h:4, from bbAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'double bbAlg::bbReconstructAllPositions(sequenceContainer&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bbComputeDownAlg.o bbComputeDownAlg.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bbComputeUpAlg.o bbComputeUpAlg.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bbEvaluateSpecificAV.o bbEvaluateSpecificAV.cpp In file included from bbEvaluateSpecificAV.cpp:1: bbEvaluateSpecificAV.h: In constructor 'bbEvaluateSpecificAV::bbEvaluateSpecificAV(const tree&, const stochasticProcess&, const sequenceContainer&, const computePijGam&)': bbEvaluateSpecificAV.h:34:27: warning: 'bbEvaluateSpecificAV::_sc' will be initialized after [-Wreorder] const sequenceContainer& _sc; ^~~ bbEvaluateSpecificAV.h:31:23: warning: 'const computePijGam& bbEvaluateSpecificAV::_bbcpij' [-Wreorder] const computePijGam& _bbcpij; ^~~~~~~ bbEvaluateSpecificAV.cpp:3:1: warning: when initialized here [-Wreorder] bbEvaluateSpecificAV::bbEvaluateSpecificAV(const tree& et, ^~~~~~~~~~~~~~~~~~~~ bbEvaluateSpecificAV.cpp: In member function 'double bbEvaluateSpecificAV::recursiveEvaluateSpecificAv(int, tree::nodeP, int)': bbEvaluateSpecificAV.cpp:65:12: warning: unused variable 'rate' [-Wunused-variable] MDOUBLE rate = _sp.rates(categor); // the r. ^~~~ In file included from bbEvaluateSpecificAV.h:4, from bbEvaluateSpecificAV.cpp:1: bb_options.h: At global scope: bb_options.h:62:21: warning: 'const string usege_splash_screen()' defined but not used [-Wunused-function] static const string usege_splash_screen() { ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bbfindBestAVDynProg.o bbfindBestAVDynProg.cpp In file included from bbfindBestAVDynProg.h:5, from bbfindBestAVDynProg.cpp:1: bb_options.h:62:21: warning: 'const string usege_splash_screen()' defined but not used [-Wunused-function] static const string usege_splash_screen() { ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bbNodeOrderAlg.o bbNodeOrderAlg.cpp In file included from bbNodeOrderAlg.cpp:1: bbNodeOrderAlg.h: In constructor 'bbNodeOrderAlg::bbNodeOrderAlg(const tree&, const stochasticProcess&, const sequenceContainer&, const computePijGam&, double)': bbNodeOrderAlg.h:33:27: warning: 'bbNodeOrderAlg::_sc' will be initialized after [-Wreorder] const sequenceContainer& _sc; ^~~ bbNodeOrderAlg.h:32:23: warning: 'const computePijGam& bbNodeOrderAlg::_cpij' [-Wreorder] const computePijGam& _cpij; ^~~~~ bbNodeOrderAlg.cpp:8:1: warning: when initialized here [-Wreorder] bbNodeOrderAlg::bbNodeOrderAlg(const tree& et, ^~~~~~~~~~~~~~ In file included from bbNodeOrderAlg.h:5, from bbNodeOrderAlg.cpp:1: bb_options.h: At global scope: bb_options.h:62:21: warning: 'const string usege_splash_screen()' defined but not used [-Wunused-function] static const string usege_splash_screen() { ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from bbNodeOrderAlg.cpp:5: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from bbNodeOrderAlg.cpp:5: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ../../libs/phylogeny/definitions.h:18, from bbNodeOrderAlg.h:4, from bbNodeOrderAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ../../libs/phylogeny/definitions.h:18, from bbNodeOrderAlg.h:4, from bbNodeOrderAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void bbNodeOrderAlg::rankRemainingNodesAccordingToTheirMarginalProb(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from bbNodeOrderAlg.cpp:5: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ../../libs/phylogeny/definitions.h:18, from bbNodeOrderAlg.h:4, from bbNodeOrderAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'void bbNodeOrderAlg::rankRemainingNodesAccordingToTheirMarginalProb(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from bbNodeOrderAlg.cpp:5: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ../../libs/phylogeny/definitions.h:18, from bbNodeOrderAlg.h:4, from bbNodeOrderAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ../../libs/phylogeny/definitions.h:18, from bbNodeOrderAlg.h:4, from bbNodeOrderAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void bbNodeOrderAlg::getNextNodeAndCharOrder(tree::TreeNode*&, std::vector&, std::vector&, int, bool, doubleRep&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from bbNodeOrderAlg.cpp:5: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ../../libs/phylogeny/definitions.h:18, from bbNodeOrderAlg.h:4, from bbNodeOrderAlg.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'std::vector bbNodeOrderAlg::findBestOrderInNode(tree::nodeP, int) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from bbNodeOrderAlg.cpp:5: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bb_options.o bb_options.cpp In file included from bb_options.cpp:2: bb_options.h: In constructor 'bb_options::bb_options(int&, char**)': bb_options.h:49:9: warning: 'bb_options::reportFile' will be initialized after [-Wreorder] string reportFile; ^~~~~~~~~~ bb_options.h:44:9: warning: 'std::__cxx11::string bb_options::outFile_seq_joint' [-Wreorder] string outFile_seq_joint; ^~~~~~~~~~~~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h:45:9: warning: 'bb_options::outFile_seq_marginal' will be initialized after [-Wreorder] string outFile_seq_marginal; ^~~~~~~~~~~~~~~~~~~~ bb_options.h:42:9: warning: 'std::__cxx11::string bb_options::outFile_prob_joint' [-Wreorder] string outFile_prob_joint; ^~~~~~~~~~~~~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h:43:9: warning: 'bb_options::outFile_prob_marginal' will be initialized after [-Wreorder] string outFile_prob_marginal; ^~~~~~~~~~~~~~~~~~~~~ bb_options.h:24:9: warning: 'std::__cxx11::string bb_options::seqfile' [-Wreorder] string seqfile; ^~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h:30:21: warning: 'bb_options::distributionName' will be initialized after [-Wreorder] distributionsNames distributionName; ^~~~~~~~~~~~~~~~ bb_options.h:26:16: warning: 'bb_options::SeqFileFormat bb_options::seqOutputFormat' [-Wreorder] SeqFileFormat seqOutputFormat; ^~~~~~~~~~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h:41:9: warning: 'bb_options::outTreeFileAncestor' will be initialized after [-Wreorder] string outTreeFileAncestor; ^~~~~~~~~~~~~~~~~~~ bb_options.h:32:15: warning: 'bb_options::boundMethods bb_options::boundMethod' [-Wreorder] boundMethods boundMethod; ^~~~~~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h:47:10: warning: 'bb_options::gammaPar' will be initialized after [-Wreorder] MDOUBLE gammaPar; ^~~~~~~~ bb_options.h:28:7: warning: 'bool bb_options::userProvideAlpha' [-Wreorder] bool userProvideAlpha; ^~~~~~~~~~~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h:48:6: warning: 'bb_options::gammaCategies' will be initialized after [-Wreorder] int gammaCategies; ^~~~~~~~~~~~~ bb_options.h:36:19: warning: 'bb_options::modelNameOptions bb_options::modelName' [-Wreorder] modelNameOptions modelName; ^~~~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h:39:7: warning: 'bb_options::useChebyshev' will be initialized after [-Wreorder] bool useChebyshev; ^~~~~~~~~~~~ bb_options.h:27:9: warning: 'std::__cxx11::string bb_options::treeOutFile' [-Wreorder] string treeOutFile; ^~~~~~~~~~~ bb_options.cpp:6:1: warning: when initialized here [-Wreorder] bb_options::bb_options(int& argc, char *argv[]): ^~~~~~~~~~ In file included from bb_options.cpp:2: bb_options.h: At global scope: bb_options.h:62:21: warning: 'const string usege_splash_screen()' defined but not used [-Wunused-function] static const string usege_splash_screen() { ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o bbReport.o bbReport.cpp In file included from bbReport.cpp:1: bbReport.h: In constructor 'BandBReportAllPos::BandBReportAllPos(const string&, int)': bbReport.h:14:16: warning: 'BandBReportAllPos::_reportFileName' will be initialized after [-Wreorder] const string& _reportFileName; ^~~~~~~~~~~~~~~ bbReport.h:13:12: warning: 'const int BandBReportAllPos::_minNumOfNodesToVisit' [-Wreorder] const int _minNumOfNodesToVisit; ^~~~~~~~~~~~~~~~~~~~~ bbReport.h:10:11: warning: when initialized here [-Wreorder] explicit BandBReportAllPos(const string& reportFileName, int minNumOfNodesToVisit) ^~~~~~~~~~~~~~~~~ bbReport.h: In constructor 'BandBReport::BandBReport(const string&, int, int)': bbReport.h:53:16: warning: 'BandBReport::_reportFileName' will be initialized after [-Wreorder] const string& _reportFileName; ^~~~~~~~~~~~~~~ bbReport.h:51:12: warning: 'const int BandBReport::_position' [-Wreorder] const int _position; ^~~~~~~~~ bbReport.cpp:10:1: warning: when initialized here [-Wreorder] BandBReport::BandBReport( const string& reportFileName, const int position, const int alphabetSize ) : ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ../../libs/phylogeny/definitions.h:18, from bbReport.h:4, from bbReport.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ../../libs/phylogeny/definitions.h:18, from bbReport.h:4, from bbReport.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'void BandBReport::report(std::__cxx11::string, int, int, doubleRep, doubleRep, doubleRep, doubleRep)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o computeMarginalReconstruction.o computeMarginalReconstruction.cpp computeMarginalReconstruction.cpp: In member function 'void computeMarginalReconstruction::compute(const distribution*)': computeMarginalReconstruction.cpp:67:11: warning: unused variable 'likelihoodOfPos' [-Wunused-variable] MDOUBLE likelihoodOfPos = 0; ^~~~~~~~~~~~~~~ computeMarginalReconstruction.cpp:45:10: warning: unused variable 'totalLikelihoodOfReconstruction' [-Wunused-variable] MDOUBLE totalLikelihoodOfReconstruction = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from computeMarginalReconstruction.cpp:8: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from computeMarginalReconstruction.cpp:8: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Distance = int; _Tp = std::pair >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from computeMarginalReconstruction.cpp:8: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69, from ../../libs/phylogeny/definitions.h:18, from computeMarginalReconstruction.h:4, from computeMarginalReconstruction.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator > >}; _Tp = std::pair >; _Alloc = std::allocator > >]': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector > >::iterator' {aka '__gnu_cxx::__normal_iterator >*, std::vector > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void computeMarginalReconstruction::outputTheMarginalProbForEachCharForEachNodePos(std::ostream&, int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62, from computeMarginalReconstruction.cpp:8: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64, from ../../libs/phylogeny/definitions.h:18, from computeMarginalReconstruction.h:4, from computeMarginalReconstruction.cpp:1: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In constructor 'computeMarginalReconstruction::computeMarginalReconstruction(const tree&, std::vector&, const sequenceContainer&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o jointNoGamma.o jointNoGamma.cpp jointNoGamma.cpp: In member function 'void jointNoGamma::compute()': jointNoGamma.cpp:23:10: warning: unused variable 'totalLikelihoodOfReconstruction' [-Wunused-variable] MDOUBLE totalLikelihoodOfReconstruction = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jointNoGamma.cpp: In member function 'std::vector jointNoGamma::computeJointAncestralFromSSC(int, const suffStatGlobalHomPos&, const suffStatGlobalHomPosJointNoGamma&, doubleRep&)': jointNoGamma.cpp:108:12: warning: unused variable 'maxL' [-Wunused-variable] MDOUBLE maxL = VERYSMALL; ^~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o mainbb.o mainbb.cpp In file included from bbAlg.h:8, from mainbb.cpp:5: bbReport.h: In constructor 'BandBReportAllPos::BandBReportAllPos(const string&, int)': bbReport.h:14:16: warning: 'BandBReportAllPos::_reportFileName' will be initialized after [-Wreorder] const string& _reportFileName; ^~~~~~~~~~~~~~~ bbReport.h:13:12: warning: 'const int BandBReportAllPos::_minNumOfNodesToVisit' [-Wreorder] const int _minNumOfNodesToVisit; ^~~~~~~~~~~~~~~~~~~~~ bbReport.h:10:11: warning: when initialized here [-Wreorder] explicit BandBReportAllPos(const string& reportFileName, int minNumOfNodesToVisit) ^~~~~~~~~~~~~~~~~ In file included from mainbb.cpp:31: ../../libs/phylogeny/bestGtrModelParams.h: In constructor 'C_evalGTRParamProportional::C_evalGTRParamProportional(GTRParam, const tree&, const sequenceContainer&, stochasticProcess&, const gammaDistribution*, const Vdouble*)': ../../libs/phylogeny/bestGtrModelParams.h:175:21: warning: 'C_evalGTRParamProportional::_sp' will be initialized after [-Wreorder] stochasticProcess& _sp; ^~~ ../../libs/phylogeny/bestGtrModelParams.h:173:27: warning: 'const gammaDistribution* C_evalGTRParamProportional::_pProportionDist' [-Wreorder] const gammaDistribution* _pProportionDist; ^~~~~~~~~~~~~~~~ ../../libs/phylogeny/bestGtrModelParams.h:162:3: warning: when initialized here [-Wreorder] C_evalGTRParamProportional( const GTRParam param, ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mainbb.h:4, from mainbb.cpp:1: bb_options.h: At global scope: bb_options.h:62:21: warning: 'const string usege_splash_screen()' defined but not used [-Wunused-function] static const string usege_splash_screen() { ^~~~~~~~~~~~~~~~~~~ mainbb.cpp: In member function 'void mainbb::findAncestralSequencesGammaJoint()': mainbb.cpp:428:101: warning: 'bm' may be used uninitialized in this function [-Wmaybe-uninitialized] bbAlg bbAlg1(_et,_spVec,_sc,bm,_options->reportFile,_options->computeAgainExactTreshold,_forceDistr); ^ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o sequenceDataDiff.o sequenceDataDiff.cpp arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-sign-compare -I. -I../../libs/phylogeny -DLOG -c -o suffStatComponentJointNoGamma.o suffStatComponentJointNoGamma.cpp ar rv libfastml.a fastml.o bbAlg.o bbComputeDownAlg.o bbComputeUpAlg.o bbEvaluateSpecificAV.o bbfindBestAVDynProg.o bbNodeOrderAlg.o bb_options.o bbReport.o computeMarginalReconstruction.o jointNoGamma.o mainbb.o sequenceDataDiff.o suffStatComponentJointNoGamma.o ar: creating libfastml.a a - fastml.o a - bbAlg.o a - bbComputeDownAlg.o a - bbComputeUpAlg.o a - bbEvaluateSpecificAV.o a - bbfindBestAVDynProg.o a - bbNodeOrderAlg.o a - bb_options.o a - bbReport.o a - computeMarginalReconstruction.o a - jointNoGamma.o a - mainbb.o a - sequenceDataDiff.o a - suffStatComponentJointNoGamma.o ranlib libfastml.a arm-linux-gnueabi-gcc -Wl,-z,relro -Wl,-z,now -L../../libs/phylogeny fastml.o libfastml.a ../../libs/phylogeny/libEvolTree.a -o fastml /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `FindDifferencesBetween2SequenceContainerFiles()': ./programs/fastml/fastml.cpp:343: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_istream >::basic_istream()': /usr/arm-linux-gnueabi/include/c++/8/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:516: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:627: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:632: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:680: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_istream >::basic_istream()': /usr/arm-linux-gnueabi/include/c++/8/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:516: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:627: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:632: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:680: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:742: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:728: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::deallocate(unitDiff*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o:/usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: more undefined references to `std::basic_ios >::clear(std::_Ios_Iostate)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `FindDifferencesBetween2SequenceContainerFiles()': ./programs/fastml/fastml.cpp:344: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/fastml.cpp:348: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::deallocate(unitDiff*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `FindDifferencesBetween2SequenceContainerFiles()': ./programs/fastml/fastml.cpp:343: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `FindDifferencesBetween2SequenceContainerFiles()': ./programs/fastml/fastml.cpp:357: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/fastml.cpp:354: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `std::basic_istream >::~basic_istream()': /usr/arm-linux-gnueabi/include/c++/8/istream:104: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/istream:104: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/istream:104: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/istream:104: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/istream:104: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/istream:104: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/istream:104: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o: in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o:(.ARM.extab.text.startup+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: fastml.o:(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::~mainbb()': ./programs/fastml/mainbb.cpp:87: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(stochasticProcess*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::~mainbb()': ./programs/fastml/mainbb.cpp:88: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:88: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:88: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:88: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:88: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::~mainbb()': ./programs/fastml/mainbb.cpp:88: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `tree::~tree()': ./programs/fastml/../../libs/phylogeny/tree.h:102: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::_Destroy_aux::__destroy(suffStatGlobalGamPos*, suffStatGlobalGamPos*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_construct.h:107: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalGamPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHom*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:728: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::printOutputTree()': ./programs/fastml/mainbb.cpp:368: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:368: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:368: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:368: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:368: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:368: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:368: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:368: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::fillOptionsParameters(int, char**)': ./programs/fastml/mainbb.cpp:383: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:383: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:383: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::cerr' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::cerr' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:742: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::printAncestralSequencesGammaJoint()': ./programs/fastml/mainbb.cpp:72: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:72: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:72: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:72: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:72: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:72: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:72: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingTreeNJ_fromDistances(std::vector >, std::allocator > > > const&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&)': ./programs/fastml/mainbb.cpp:120: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `uniDistribution::~uniDistribution()': ./programs/fastml/../../libs/phylogeny/uniDistribution.h:18: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `bool std::operator==, std::allocator >(std::__cxx11::basic_string, std::allocator > const&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6084: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `tree::~tree()': ./programs/fastml/../../libs/phylogeny/tree.h:102: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:742: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator >, std::allocator > > > >::deallocate(std::vector >, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getMarginalReconstruction()': ./programs/fastml/mainbb.cpp:478: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:472: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, sequence*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, sequence*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:742: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::findAncestralSequencesHomJoint()': ./programs/fastml/mainbb.cpp:444: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:439: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, sequence*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, sequence*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_istream >::basic_istream()': /usr/arm-linux-gnueabi/include/c++/8/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:516: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:627: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:632: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ifstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:680: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::computeFreq(codon&)': ./programs/fastml/mainbb.cpp:556: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::_Destroy_aux::__destroy >*>(std::vector >*, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_construct.h:107: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_construct.h:107: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_construct.h:107: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_construct.h:107: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_construct.h:107: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_istream >::basic_istream()': /usr/arm-linux-gnueabi/include/c++/8/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:516: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:627: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:632: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingSequenceData()': ./programs/fastml/mainbb.cpp:389: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingSequenceData()': ./programs/fastml/mainbb.cpp:387: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:388: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:388: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:388: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingSequenceData()': ./programs/fastml/mainbb.cpp:392: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:392: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:514: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingSequenceData()': ./programs/fastml/mainbb.cpp:389: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:389: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:389: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:389: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:389: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:389: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:389: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:257: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:255: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:332: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:333: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:336: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:337: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `gammaDistribution::~gammaDistribution()': ./programs/fastml/../../libs/phylogeny/gammaDistribution.h:23: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:340: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:341: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:318: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:322: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:282: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:286: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):./programs/fastml/mainbb.cpp:273: more undefined references to `operator new(unsigned int)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:309: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:313: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:352: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:353: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:344: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:344: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:300: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:304: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:291: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):./programs/fastml/mainbb.cpp:295: more undefined references to `operator new(unsigned int)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:302: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:293: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:311: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:277: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:320: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):./programs/fastml/mainbb.cpp:266: more undefined references to `operator new(unsigned int)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > const, int> > >::deallocate(std::_Rb_tree_node, std::allocator > const, int> >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:277: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:277: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:340: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:318: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:318: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:320: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:336: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:336: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:336: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:353: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:350: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:352: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:332: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingStochasticProcess()': ./programs/fastml/mainbb.cpp:257: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:257: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::createStochasticProcessVec()': ./programs/fastml/mainbb.cpp:538: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `wYangModel::clone() const': ./programs/fastml/../../libs/phylogeny/wYangModel.h:15: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `codon::~codon()': ./programs/fastml/../../libs/phylogeny/codon.h:55: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `codon::~codon()': ./programs/fastml/../../libs/phylogeny/codon.h:55: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::createStochasticProcessVec()': ./programs/fastml/mainbb.cpp:538: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:537: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `wYangModel::wYangModel(wYangModel const&)': ./programs/fastml/../../libs/phylogeny/wYangModel.h:13: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `wYangModel::clone() const': ./programs/fastml/../../libs/phylogeny/wYangModel.h:15: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::getStartingBLAndModelParam()': ./programs/fastml/mainbb.cpp:531: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::findAncestralSequencesGammaJoint()': ./programs/fastml/mainbb.cpp:428: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/mainbb.cpp:428: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::fillOptionsParameters(int, char**)': ./programs/fastml/mainbb.cpp:383: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `bool std::operator==, std::allocator >(std::__cxx11::basic_string, std::allocator > const&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6084: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: more undefined references to `std::__throw_bad_cast()' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(stochasticProcess*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::mainbb(int, char**)': ./programs/fastml/mainbb.cpp:44: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `mainbb::fillOptionsParameters(int, char**)': ./programs/fastml/mainbb.cpp:383: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `std::cerr' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `jcDistance::~jcDistance()': ./programs/fastml/../../libs/phylogeny/jcDistance.h:17: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZN4treeD2Ev[_ZN4treeD5Ev]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `tree::~tree()': ./programs/fastml/../../libs/phylogeny/tree.h:102: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZN4treeD0Ev[_ZN4treeD5Ev]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `aaJC::clone() const': ./programs/fastml/../../libs/phylogeny/aaJC.h:21: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `jcDistance::clone() const': ./programs/fastml/../../libs/phylogeny/jcDistance.h:21: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `nucJC::clone() const': ./programs/fastml/../../libs/phylogeny/nucJC.h:21: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `nucJC::~nucJC()': ./programs/fastml/../../libs/phylogeny/nucJC.h:17: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `aaJC::~aaJC()': ./programs/fastml/../../libs/phylogeny/aaJC.h:18: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `nucJC::d2Pij_dt2(int, int, double) const': ./programs/fastml/../../libs/phylogeny/nucJC.h:37: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/nucJC.h:37: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `nucJC::dPij_dt(int, int, double) const': ./programs/fastml/../../libs/phylogeny/nucJC.h:31: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/nucJC.h:31: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `aaJC::d2Pij_dt2(int, int, double) const': ./programs/fastml/../../libs/phylogeny/aaJC.h:40: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):./programs/fastml/../../libs/phylogeny/aaJC.h:40: more undefined references to `exp' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `trivialAccelerator::clone() const': ./programs/fastml/../../libs/phylogeny/trivialAccelerator.h:18: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/trivialAccelerator.h:18: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/trivialAccelerator.h:18: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZNK18trivialAccelerator5cloneEv[_ZNK18trivialAccelerator5cloneEv]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `nucJC::Pij_t(int, int, double) const': ./programs/fastml/../../libs/phylogeny/nucJC.h:26: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/nucJC.h:26: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `aaJC::Pij_t(int, int, double) const': ./programs/fastml/../../libs/phylogeny/aaJC.h:28: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/aaJC.h:28: undefined reference to `exp' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `trivialAccelerator::~trivialAccelerator()': ./programs/fastml/../../libs/phylogeny/trivialAccelerator.h:19: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `gammaDistribution::~gammaDistribution()': ./programs/fastml/../../libs/phylogeny/gammaDistribution.h:23: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `computePijGam::~computePijGam()': ./programs/fastml/../../libs/phylogeny/computePijComponent.h:43: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `computePijHom::~computePijHom()': ./programs/fastml/../../libs/phylogeny/computePijComponent.h:31: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab+0xc): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab+0x2c): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab+0x70): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab+0x88): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab+0xa0): more undefined references to `__gxx_personality_v0' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `computePijHomSpec::~computePijHomSpec()': ./programs/fastml/../../libs/phylogeny/computePijComponent.h:15: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::type_info::operator!=(std::type_info const&) const': /usr/arm-linux-gnueabi/include/c++/8/typeinfo:137: undefined reference to `std::type_info::operator==(std::type_info const&) const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `jcDistance::giveDistance(sequence const&, sequence const&, std::vector > const*, double*) const': ./programs/fastml/../../libs/phylogeny/jcDistance.h:38: undefined reference to `__dynamic_cast' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/jcDistance.h:40: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/jcDistance.h:41: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/jcDistance.h:81: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `jcDistance::giveDistance(sequence const&, sequence const&, std::vector > const*, double*) const': ./programs/fastml/../../libs/phylogeny/jcDistance.h:40: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/jcDistance.h:40: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/jcDistance.h:41: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/jcDistance.h:41: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZNK10jcDistance12giveDistanceERK8sequenceS2_PKSt6vectorIdSaIdEEPd[_ZNK10jcDistance12giveDistanceERK8sequenceS2_PKSt6vectorIdSaIdEEPd]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, sequence*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::__uninitialized_copy::__uninit_copy(sequence*, sequence*, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, sequence*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::vector >::_M_allocate_and_copy<__gnu_cxx::__normal_iterator > > >(unsigned int, __gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1405: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `sequence* std::vector >::_M_allocate_and_copy<__gnu_cxx::__normal_iterator > > >(unsigned int, __gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1408: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1405: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1405: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZNSt6vectorI8sequenceSaIS0_EEaSERKS2_[_ZNSt6vectorI8sequenceSaIS0_EEaSERKS2_]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy, std::allocator >*, std::__cxx11::basic_string, std::allocator >*>(std::__cxx11::basic_string, std::allocator >*, std::__cxx11::basic_string, std::allocator >*, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy, std::allocator >*, std::__cxx11::basic_string, std::allocator >*>(std::__cxx11::basic_string, std::allocator >*, std::__cxx11::basic_string, std::allocator >*, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*>(__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_allocate_and_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > > >(unsigned int, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1405: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::__cxx11::basic_string, std::allocator >* std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_allocate_and_copy<__gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > > >(unsigned int, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, __gnu_cxx::__normal_iterator, std::allocator > const*, std::vector, std::allocator >, std::allocator, std::allocator > > > >)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1408: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1405: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1405: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `codon::~codon()': ./programs/fastml/../../libs/phylogeny/codon.h:55: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator, std::allocator > const, int> > >::deallocate(std::_Rb_tree_node, std::allocator > const, int> >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `codon::~codon()': ./programs/fastml/../../libs/phylogeny/codon.h:55: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `codon::~codon()': ./programs/fastml/../../libs/phylogeny/codon.h:55: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `wYangModel::~wYangModel()': ./programs/fastml/../../libs/phylogeny/wYangModel.h:19: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(stochasticProcess*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, stochasticProcess const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(stochasticProcess*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, stochasticProcess const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:465: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `stochasticProcess* std::__uninitialized_copy::__uninit_copy(stochasticProcess const*, stochasticProcess const*, stochasticProcess*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, stochasticProcess const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `stochasticProcess* std::__uninitialized_copy::__uninit_copy(stochasticProcess const*, stochasticProcess const*, stochasticProcess*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, stochasticProcess const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `stochasticProcess* std::__uninitialized_copy::__uninit_copy(stochasticProcess const*, stochasticProcess const*, stochasticProcess*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, stochasticProcess const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `stochasticProcess* std::__uninitialized_copy::__uninit_copy(stochasticProcess const*, stochasticProcess const*, stochasticProcess*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, stochasticProcess const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZNSt6vectorI17stochasticProcessSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_[_ZNSt6vectorI17stochasticProcessSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(stochasticProcess*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `stochasticProcess* std::__uninitialized_copy::__uninit_copy(stochasticProcess const*, stochasticProcess const*, stochasticProcess*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::vector >::_M_default_append(unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:615: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(stochasticProcess*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `std::vector >::_M_default_append(unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:621: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:615: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:615: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.ARM.extab.text._ZNSt6vectorI17stochasticProcessSaIS0_EE17_M_default_appendEj[_ZNSt6vectorI17stochasticProcessSaIS0_EE17_M_default_appendEj]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `q2pt::~q2pt()': ./programs/fastml/../../libs/phylogeny/fromQtoPt.h:15: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI8alphabet[_ZTI8alphabet]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI16replacementModel[_ZTI16replacementModel]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI14pijAccelerator[_ZTI14pijAccelerator]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI4tree[_ZTI4tree]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI4aaJC[_ZTI4aaJC]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI17computePijHomSpec[_ZTI17computePijHomSpec]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI13computePijHom[_ZTI13computePijHom]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI13computePijGam[_ZTI13computePijGam]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI14distanceMethod[_ZTI14distanceMethod]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI10jcDistance[_ZTI10jcDistance]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTIPK8alphabet[_ZTIPK8alphabet]+0x0): undefined reference to `vtable for __cxxabiv1::__pointer_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI5nucJC[_ZTI5nucJC]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro._ZTI18trivialAccelerator[_ZTI18trivialAccelerator]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(mainbb.o):(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `sequenceDataDiff::printDiff(std::ostream&)': ./programs/fastml/sequenceDataDiff.cpp:40: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::__cxx11::basic_string, std::allocator >::append(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1222: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `std::__cxx11::basic_string, std::allocator >::assign(unsigned int, char)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1453: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace_aux(unsigned int, unsigned int, unsigned int, char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1453: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace_aux(unsigned int, unsigned int, unsigned int, char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: more undefined references to `std::__throw_logic_error(char const*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(unitDiff*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unitDiff const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(unitDiff*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unitDiff const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:465: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `void std::vector >::_M_realloc_insert(__gnu_cxx::__normal_iterator > >, unitDiff const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o):(.ARM.extab.text._ZNSt6vectorI8unitDiffSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_[_ZNSt6vectorI8unitDiffSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(sequenceDataDiff.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::~bbAlg()': ./programs/fastml/bbAlg.cpp:185: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:742: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/bbAlg.cpp:55: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/bbAlg.cpp:56: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/bbAlg.cpp:57: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/bbAlg.cpp:63: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/bbAlg.cpp:64: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/bbAlg.cpp:69: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: more undefined references to `std::__throw_bad_cast()' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/bbAlg.cpp:52: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:52: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:52: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:52: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:52: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:52: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:52: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(tree::TreeNode**, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbAlg(tree const&, std::vector >&, sequenceContainer const&, bbAlg::boundMethod, std::__cxx11::basic_string, std::allocator > const&, double, distribution const*)': ./programs/fastml/bbAlg.cpp:34: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:36: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbAlg(tree const&, std::vector >&, sequenceContainer const&, bbAlg::boundMethod, std::__cxx11::basic_string, std::allocator > const&, double, distribution const*)': ./programs/fastml/bbAlg.cpp:38: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: more undefined references to `std::__throw_bad_cast()' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `computePijGam::~computePijGam()': ./programs/fastml/../../libs/phylogeny/computePijComponent.h:43: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbAlg(tree const&, std::vector >&, sequenceContainer const&, bbAlg::boundMethod, std::__cxx11::basic_string, std::allocator > const&, double, distribution const*)': ./programs/fastml/bbAlg.cpp:38: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:34: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbAlg(tree const&, std::vector >&, sequenceContainer const&, bbAlg::boundMethod, std::__cxx11::basic_string, std::allocator > const&, double, distribution const*)': ./programs/fastml/bbAlg.cpp:36: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:36: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(tree::TreeNode**, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(tree::TreeNode**, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::fromAncestralSequenceToSeqData()': ./programs/fastml/bbAlg.cpp:196: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbReconstructAllPositions(sequenceContainer&)': ./programs/fastml/bbAlg.cpp:85: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbReconstructAllPositions(sequenceContainer&)': ./programs/fastml/bbAlg.cpp:86: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbReconstructAllPositions(sequenceContainer&)': ./programs/fastml/bbAlg.cpp:91: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bool std::operator==, std::allocator >(std::__cxx11::basic_string, std::allocator > const&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6084: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbReconstructAllPositions(sequenceContainer&)': ./programs/fastml/bbAlg.cpp:102: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_istream >::basic_istream(std::basic_streambuf >*)': /usr/arm-linux-gnueabi/include/c++/8/istream:95: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >::basic_ostream(std::basic_streambuf >*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:85: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_fstream >::basic_fstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:966: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:968: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_fstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:1076: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:1081: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `BandBReportAllPos::printReport() const': ./programs/fastml/bbReport.h:17: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `BandBReportAllPos::printReport() const': ./programs/fastml/bbReport.h:18: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_fstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:1131: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHom*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbReconstructAllPositions(sequenceContainer&)': ./programs/fastml/bbAlg.cpp:94: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:94: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbReconstructAllPositions(sequenceContainer&)': ./programs/fastml/bbAlg.cpp:97: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:97: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: more undefined references to `std::__throw_bad_cast()' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_fstream >::basic_fstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:966: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `computePijGam::~computePijGam()': ./programs/fastml/../../libs/phylogeny/computePijComponent.h:43: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `BandBReportAllPos::printReport() const': ./programs/fastml/bbReport.h:16: undefined reference to `std::basic_fstream >::~basic_fstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `bbAlg::bbReconstructAllPositions(sequenceContainer&)': ./programs/fastml/bbAlg.cpp:85: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:85: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:85: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:85: undefined reference to `VTT for std::basic_fstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:85: undefined reference to `vtable for std::basic_fstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:85: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbAlg.cpp:85: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab+0x40): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab+0x68): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab+0xa4): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab+0x120): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab+0x16c): more undefined references to `__gxx_personality_v0' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHom*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::__cxx11::basic_string, std::allocator >::assign(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1366: more undefined references to `std::__cxx11::basic_string, std::allocator >::_M_assign(std::__cxx11::basic_string, std::allocator > const&)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_copy::__uninit_copy, sequence*>(std::move_iterator, std::move_iterator, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_copy::__uninit_copy(sequence const*, sequence const*, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_fill_n::__uninit_fill_n(sequence*, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:213: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:216: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:213: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:216: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_copy::__uninit_copy(sequence const*, sequence const*, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:552: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(sequence*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:562: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_copy::__uninit_copy, sequence*>(std::move_iterator, std::move_iterator, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `void __gnu_cxx::new_allocator::destroy(sequence*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:140: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_copy::__uninit_copy, sequence*>(std::move_iterator, std::move_iterator, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_fill_n::__uninit_fill_n(sequence*, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:213: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:552: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_copy::__uninit_copy(sequence const*, sequence const*, sequence*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:552: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `sequence* std::__uninitialized_fill_n::__uninit_fill_n(sequence*, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:213: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned int, sequence const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:552: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:552: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab.text._ZNSt6vectorI8sequenceSaIS0_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS0_S2_EEjRKS0_[_ZNSt6vectorI8sequenceSaIS0_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS0_S2_EEjRKS0_]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHom*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `computePijHomSpec* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, computePijHomSpec*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, computePijHomSpec*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `computePijHom* std::__uninitialized_copy::__uninit_copy(computePijHom const*, computePijHom const*, computePijHom*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `computePijHomSpec* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, computePijHomSpec*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, computePijHomSpec*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `computePijHom* std::__uninitialized_copy::__uninit_copy(computePijHom const*, computePijHom const*, computePijHom*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_default_append(unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:615: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHom*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_default_append(unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:621: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `std::vector >::_M_default_append(unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:615: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:615: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.ARM.extab.text._ZNSt6vectorI13computePijHomSaIS0_EE17_M_default_appendEj[_ZNSt6vectorI13computePijHomSaIS0_EE17_M_default_appendEj]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbAlg.o):(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `bbEvaluateSpecificAV::~bbEvaluateSpecificAV()': ./programs/fastml/bbEvaluateSpecificAV.cpp:17: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `bbEvaluateSpecificAV::~bbEvaluateSpecificAV()': ./programs/fastml/bbEvaluateSpecificAV.cpp:17: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `bbEvaluateSpecificAV::~bbEvaluateSpecificAV()': ./programs/fastml/bbEvaluateSpecificAV.cpp:18: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `bbEvaluateSpecificAV::bbEvaluateSpecificAV(tree const&, stochasticProcess const&, sequenceContainer const&, computePijGam const&)': ./programs/fastml/bbEvaluateSpecificAV.cpp:7: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `bbEvaluateSpecificAV::bbEvaluateSpecificAV(tree const&, stochasticProcess const&, sequenceContainer const&, computePijGam const&)': ./programs/fastml/bbEvaluateSpecificAV.cpp:7: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator > >::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `std::vector >, std::allocator > > >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbEvaluateSpecificAV.o):(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `bbfindBestAVDynProg::~bbfindBestAVDynProg()': ./programs/fastml/bbfindBestAVDynProg.cpp:21: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `bbfindBestAVDynProg::~bbfindBestAVDynProg()': ./programs/fastml/bbfindBestAVDynProg.cpp:22: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `bbfindBestAVDynProg::~bbfindBestAVDynProg()': ./programs/fastml/bbfindBestAVDynProg.cpp:21: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `bbfindBestAVDynProg::bbfindBestAVDynProg(tree const*, stochasticProcess const*, sequenceContainer const&, computePijGam const*)': ./programs/fastml/bbfindBestAVDynProg.cpp:10: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `bbfindBestAVDynProg::bbfindBestAVDynProg(tree const*, stochasticProcess const*, sequenceContainer const&, computePijGam const*)': ./programs/fastml/bbfindBestAVDynProg.cpp:10: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbfindBestAVDynProg.cpp:6: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbfindBestAVDynProg.o):(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(tree::TreeNode**, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `bbNodeOrderAlg::~bbNodeOrderAlg()': ./programs/fastml/bbNodeOrderAlg.cpp:20: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(tree::TreeNode**, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(tree::TreeNode**, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `suffStatGlobalGamPos::~suffStatGlobalGamPos()': ./programs/fastml/../../libs/phylogeny/suffStatComponent.h:135: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):(.ARM.extab+0x18): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):(.ARM.extab+0x30): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):(.ARM.extab+0x48): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):(.ARM.extab+0x6c): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator::deallocate(tree::TreeNode**, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__gnu_cxx::new_allocator >::deallocate(std::pair*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbNodeOrderAlg.o):(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1268: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1268: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1268: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1268: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1268: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1268: more undefined references to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned int, unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:312: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:312: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:312: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:312: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:312: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:312: more undefined references to `std::__throw_length_error(char const*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:728: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::__cxx11::basic_string, std::allocator >::assign(char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: more undefined references to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::__cxx11::basic_string, std::allocator >::assign(char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `bool std::operator==, std::allocator >(std::__cxx11::basic_string, std::allocator > const&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6084: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `bb_options::bb_options(int&, char**)': ./programs/fastml/bb_options.cpp:30: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `std::__cxx11::basic_string, std::allocator >::assign(char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1439: more undefined references to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):(.ARM.extab+0x18): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o):(.ARM.extab+0x88): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bb_options.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:728: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `BandBReport::makeReport() const': ./programs/fastml/bbReport.cpp:48: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator, std::allocator > const, int> > >::deallocate(std::_Rb_tree_node, std::allocator > const, int> >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `BandBReport::makeReport() const': ./programs/fastml/bbReport.cpp:43: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/bbReport.cpp:43: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::basic_ofstream >::basic_ofstream()': /usr/arm-linux-gnueabi/include/c++/8/fstream:727: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `std::__cxx11::basic_string, std::allocator >::_M_is_local() const': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:210: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:210: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:210: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:210: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:210: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `void std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_realloc_insert, std::allocator > const&>(__gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `void std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_realloc_insert, std::allocator > const&>(__gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:465: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `void std::vector, std::allocator >, std::allocator, std::allocator > > >::_M_realloc_insert, std::allocator > const&>(__gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:457: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o):(.ARM.extab.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbReport.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::swap, std::allocator >(std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6288: undefined reference to `std::__cxx11::basic_string, std::allocator >::swap(std::__cxx11::basic_string, std::allocator >&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6288: undefined reference to `std::__cxx11::basic_string, std::allocator >::swap(std::__cxx11::basic_string, std::allocator >&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6288: undefined reference to `std::__cxx11::basic_string, std::allocator >::swap(std::__cxx11::basic_string, std::allocator >&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::swap, std::allocator >(std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6288: undefined reference to `std::__cxx11::basic_string, std::allocator >::swap(std::__cxx11::basic_string, std::allocator >&)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computeMarginalReconstruction::outputTheMarginalProbForEachCharForEachNodePos(std::ostream&, int)': ./programs/fastml/computeMarginalReconstruction.cpp:168: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator, std::allocator > > >::deallocate(std::pair, std::allocator > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator, std::allocator > > >::deallocate(std::pair, std::allocator > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:742: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computeMarginalReconstruction::outputTheMarginalProbForEachCharForEachNode(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/computeMarginalReconstruction.cpp:138: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `treeIterDownTopConst::next()': ./programs/fastml/../../libs/phylogeny/treeIt.h:111: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/treeIt.h:111: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/treeIt.h:111: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/treeIt.h:111: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/../../libs/phylogeny/treeIt.h:111: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6328: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computeMarginalReconstruction::outputTheMarginalProbForEachCharForEachNode(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/computeMarginalReconstruction.cpp:156: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computeMarginalReconstruction::outputTheMarginalProbForEachCharForEachNode(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/computeMarginalReconstruction.cpp:158: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computeMarginalReconstruction::outputTheMarginalProbForEachCharForEachNode(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/computeMarginalReconstruction.cpp:124: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/computeMarginalReconstruction.cpp:124: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator >, std::allocator > > > >::deallocate(std::vector >, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computeMarginalReconstruction::computeMarginalReconstruction(tree const&, std::vector >&, sequenceContainer const&)': ./programs/fastml/computeMarginalReconstruction.cpp:17: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computeMarginalReconstruction::compute(distribution const*)': ./programs/fastml/computeMarginalReconstruction.cpp:55: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHom*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `stochasticProcess::categories() const': ./programs/fastml/../../libs/phylogeny/stochasticProcess.h:21: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `computePijGam::~computePijGam()': ./programs/fastml/../../libs/phylogeny/computePijComponent.h:43: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):(.ARM.extab+0x24): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):(.ARM.extab+0x44): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):(.ARM.extab+0xa4): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):(.ARM.extab+0x148): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o):(.ARM.extab+0x164): more undefined references to `__gxx_personality_v0' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator >, std::allocator > > > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator >, std::allocator > > > >::deallocate(std::vector >, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator, std::allocator > > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__gnu_cxx::new_allocator, std::allocator > > >::deallocate(std::pair, std::allocator > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(computeMarginalReconstruction.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >::basic_ostream()': /usr/arm-linux-gnueabi/include/c++/8/ostream:385: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:742: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ofstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:853: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:858: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/jointNoGamma.cpp:132: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/jointNoGamma.cpp:133: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/jointNoGamma.cpp:134: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/jointNoGamma.cpp:140: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/jointNoGamma.cpp:141: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/jointNoGamma.cpp:146: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ofstream >::close()': /usr/arm-linux-gnueabi/include/c++/8/fstream:906: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/fstream:247: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabi/include/c++/8/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):/usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: more undefined references to `std::__throw_bad_cast()' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ofstream >::basic_ofstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabi/include/c++/8/fstream:740: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::outputTheJointProbAtEachSite(std::__cxx11::basic_string, std::allocator > const&)': ./programs/fastml/jointNoGamma.cpp:129: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/jointNoGamma.cpp:129: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/jointNoGamma.cpp:129: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/jointNoGamma.cpp:129: undefined reference to `VTT for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/jointNoGamma.cpp:129: undefined reference to `vtable for std::basic_ofstream >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/jointNoGamma.cpp:129: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./programs/fastml/jointNoGamma.cpp:129: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::jointNoGamma(tree const&, stochasticProcess const&, sequenceContainer const&)': ./programs/fastml/jointNoGamma.cpp:11: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::compute()': ./programs/fastml/jointNoGamma.cpp:26: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPosJointNoGamma*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::__cxx11::basic_string, std::allocator >::append(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1222: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `jointNoGamma::compute()': ./programs/fastml/jointNoGamma.cpp:32: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `suffStatGlobalHomPos::~suffStatGlobalHomPos()': ./programs/fastml/../../libs/phylogeny/suffStatComponent.h:110: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):(.ARM.extab+0x40): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):(.ARM.extab+0x6c): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):(.ARM.extab+0x104): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):(.ARM.extab+0x120): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):(.ARM.extab+0x15c): more undefined references to `__gxx_personality_v0' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPosJointNoGamma*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `std::vector >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(jointNoGamma.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeDownAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeDownAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeDownAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeDownAlg.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeDownAlg.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeDownAlg.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: libfastml.a(bbComputeUpAlg.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::__cxx11::basic_string, std::allocator >::append(unsigned int, char)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1281: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace_aux(unsigned int, unsigned int, unsigned int, char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `amino::fromInt[abi:cxx11](int) const': ./libs/phylogeny/amino.cpp:96: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::__cxx11::basic_string, std::allocator >::push_back(char)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1353: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_mutate(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::__cxx11::basic_string, std::allocator >::push_back(char)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1353: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_mutate(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `amino::fromChar(char) const': ./libs/phylogeny/amino.cpp:49: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `amino::amino()': ./libs/phylogeny/amino.cpp:7: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::__cxx11::basic_string, std::allocator >::push_back(char)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1353: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_mutate(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `amino::fromChar(char) const': ./libs/phylogeny/amino.cpp:49: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::__cxx11::basic_string, std::allocator >::append(unsigned int, char)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:1281: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace_aux(unsigned int, unsigned int, unsigned int, char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::_Rb_tree_iterator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >::operator++(int)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:295: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `aminoUtility::codonOf(int, codon&)': ./libs/phylogeny/amino.cpp:148: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `aminoUtility::codonOf(int, codon&)': ./libs/phylogeny/amino.cpp:148: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:86: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `amino::clone() const': ./libs/phylogeny/amino.h:26: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:102: undefined reference to `std::__throw_bad_alloc()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:89: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `amino::clone() const': ./libs/phylogeny/amino.h:26: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./libs/phylogeny/amino.h:26: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::vector >* std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*>(__gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, __gnu_cxx::__normal_iterator > const*, std::vector >, std::allocator > > > >, std::vector >*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_uninitialized.h:86: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab.text._ZNK5amino5cloneEv[_ZNK5amino5cloneEv]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `amino::~amino()': ./libs/phylogeny/amino.h:25: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab+0x1c): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab+0x4c): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab+0x84): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab+0xb4): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab+0xcc): more undefined references to `__gxx_personality_v0' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::vector >, std::allocator > > >::_M_check_len(unsigned int, char const*) const': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1643: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > >::deallocate(std::__cxx11::basic_string, std::allocator >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_M_construct_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&>(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:630: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_M_construct_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&>(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:634: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_M_construct_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&>(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:630: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__gnu_cxx::new_allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::deallocate(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_M_construct_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&>(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:634: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:630: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >* std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_M_copy, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_Alloc_node>(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > const*, std::_Rb_tree_node_base*, std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_Alloc_node&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1858: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1861: undefined reference to `__cxa_rethrow' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `void std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_M_construct_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&>(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >*, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > > const&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:630: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:630: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >* std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_M_copy, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_Alloc_node>(std::_Rb_tree_node, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > const*, std::_Rb_tree_node_base*, std::_Rb_tree, std::allocator >, std::pair, std::allocator > const, std::__cxx11::basic_string, std::allocator > >, std::_Select1st, std::allocator > const, std::__cxx11::basic_string, std::allocator > > >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >::_Alloc_node&)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1858: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:1858: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.ARM.extab.text._ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE7_M_copyINSE_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_[_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE7_M_copyINSE_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_]+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o): in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(amino.o):(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBBL::bestAlphaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:56: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBBL::bestAlphaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:79: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBBL::bestAlphaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:101: undefined reference to `std::cerr' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ./libs/phylogeny/bestAlpha.cpp:76: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestBetaAndBBL::bestBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:272: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestBetaAndBBL::bestBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:295: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(countTableComponentGam*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `void std::_Destroy_aux::__destroy(suffStatGlobalGamPos*, suffStatGlobalGamPos*)': /usr/arm-linux-gnueabi/include/c++/8/bits/stl_construct.h:107: undefined reference to `std::cerr' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalGamPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator > >::deallocate(std::vector >*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHomSpec*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(computePijHom*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestBetaAndBBL::bestBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:292: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBetaAndBBL::bestAlphaAndBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:384: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBetaAndBBL::bestAlphaAndBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:408: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBetaAndBBL::bestAlphaAndBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:428: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/bits/locale_facets.h:876: more undefined references to `std::ctype::_M_widen_init() const' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBetaAndBBL::bestAlphaAndBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:422: undefined reference to `std::cerr' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatSpecHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(suffStatGlobalHomPos*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o):/usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: more undefined references to `operator delete(void*)' follow /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphaAndBetaAndBBL::bestAlphaAndBetaAndBBL(tree&, sequenceContainer const&, stochasticProcess&, std::vector > const*, double, double, double, double, double, double, double, int, int)': ./libs/phylogeny/bestAlpha.cpp:425: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bestAlphasAndBBLProportional::bestAlphasAndBBLProportional(tree&, std::vector >&, multipleStochasticProcess*, gammaDistribution*, std::vector >, double, double, double, int, int, bool, bool, std::__cxx11::basic_string, std::allocator >, bool, bool, std::vector > const*, double, double, double)': ./libs/phylogeny/bestAlpha.cpp:238: undefined reference to `std::ostream::operator<<(int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::ostream::operator<<(double)': /usr/arm-linux-gnueabi/include/c++/8/ostream:221: undefined reference to `std::ostream& std::ostream::_M_insert(double)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:613: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `bool std::operator==, std::allocator >(std::__cxx11::basic_string, std::allocator > const&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/bits/basic_string.h:6084: undefined reference to `std::__cxx11::basic_string, std::allocator >::compare(char const*) const' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:111: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `__gnu_cxx::new_allocator::deallocate(double*, unsigned int)': /usr/arm-linux-gnueabi/include/c++/8/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabi/include/c++/8/ostream:561: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux-gnueabi/bin/ld: ../../libs/phylogeny/libEvolTree.a(bestAlpha.o): in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabi/include/c++/8/ostream:591: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabi/8/../../../../arm-linux