sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | fastqtl 2.184+dfsg-6 (arm64) Mon, 09 Sep 2019 03:33:08 +0000 | +==============================================================================+ Package: fastqtl Version: 2.184+dfsg-6 Source Version: 2.184+dfsg-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-163c4b68-3f1e-4d5c-8ed7-8f4e95409d87' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-lLNatl/resolver-FVrF48' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-08-0826.55.pdiff [6173 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-08-1412.01.pdiff [13.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-08-2014.07.pdiff [13.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-08-2014.07.pdiff [13.8 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-08-0826.55.pdiff [7899 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-08-1412.01.pdiff [10.5 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-08-2014.07.pdiff [16.1 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-08-2014.07.pdiff [16.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8088 kB] Fetched 8350 kB in 2s (4084 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fastqtl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastqtl.git Please use: git clone https://salsa.debian.org/med-team/fastqtl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.1 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-6 (dsc) [2186 B] Get:2 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-6 (tar) [17.1 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-6 (diff) [19.2 kB] Fetched 17.1 MB in 0s (61.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fastqtl-lLNatl/fastqtl-2.184+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-lLNatl' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 11~), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [455 B] Get:5 copy:/<>/apt_archive ./ Packages [544 B] Fetched 1956 B in 0s (96.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libboost-dev:arm64 libboost-iostreams-dev:arm64 libboost-iostreams1.67-dev:arm64 libboost-iostreams1.67.0:arm64 libboost-program-options-dev:arm64 libboost-program-options1.67-dev:arm64 libboost-program-options1.67.0:arm64 libboost-regex1.67-dev:arm64 libboost-regex1.67.0:arm64 libboost1.67-dev:arm64 libbsd0 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:arm64 libdb5.3:arm64 libdebian-dpkgcross-perl libdeflate0:arm64 libeigen3-dev libelf1 libffi6:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libgcrypt20:arm64 libgfortran5:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgsl-dev:arm64 libgsl23:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhogweed4:arm64 libhts-dev:arm64 libhts2:arm64 libicu-dev:arm64 libicu63 libicu63:arm64 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 libldap-common liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libncurses6 libnettle6:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1:arm64 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtasn1-6:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db pkg-config po-debconf r-mathlib:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:arm64 libboost-doc:arm64 libboost1.67-doc:arm64 libboost-atomic1.67-dev:arm64 libboost-chrono1.67-dev:arm64 libboost-container1.67-dev:arm64 libboost-context1.67-dev:arm64 libboost-coroutine1.67-dev:arm64 libboost-date-time1.67-dev:arm64 libboost-exception1.67-dev:arm64 libboost-fiber1.67-dev:arm64 libboost-filesystem1.67-dev:arm64 libboost-graph1.67-dev:arm64 libboost-graph-parallel1.67-dev:arm64 libboost-locale1.67-dev:arm64 libboost-log1.67-dev:arm64 libboost-math1.67-dev:arm64 libboost-mpi1.67-dev:arm64 libboost-mpi-python1.67-dev:arm64 libboost-numpy1.67-dev:arm64 libboost-python1.67-dev:arm64 libboost-random1.67-dev:arm64 libboost-serialization1.67-dev:arm64 libboost-signals1.67-dev:arm64 libboost-stacktrace1.67-dev:arm64 libboost-system1.67-dev:arm64 libboost-test1.67-dev:arm64 libboost-thread1.67-dev:arm64 libboost-timer1.67-dev:arm64 libboost-type-erasure1.67-dev:arm64 libboost-wave1.67-dev:arm64 libboost1.67-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libeigen3-doc libmpfrc++-dev rng-tools:arm64 gnutls-bin:arm64 gsl-ref-psdoc:arm64 | gsl-doc-pdf:arm64 | gsl-doc-info:arm64 | gsl-ref-html:arm64 krb5-doc:arm64 krb5-user:arm64 icu-doc:arm64 liblzma-doc:arm64 libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:arm64 krb5-locales:arm64 libgpm2 publicsuffix:arm64 libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl r-base-core:arm64 r-base-dev:arm64 The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libboost-dev:arm64 libboost-iostreams-dev:arm64 libboost-iostreams1.67-dev:arm64 libboost-iostreams1.67.0:arm64 libboost-program-options-dev:arm64 libboost-program-options1.67-dev:arm64 libboost-program-options1.67.0:arm64 libboost-regex1.67-dev:arm64 libboost-regex1.67.0:arm64 libboost1.67-dev:arm64 libbsd0 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:arm64 libdb5.3:arm64 libdebian-dpkgcross-perl libdeflate0:arm64 libeigen3-dev libelf1 libffi6:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libgcrypt20:arm64 libgfortran5:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgsl-dev:arm64 libgsl23:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhogweed4:arm64 libhts-dev:arm64 libhts2:arm64 libicu-dev:arm64 libicu63 libicu63:arm64 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 libldap-common liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libncurses6 libnettle6:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1:arm64 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtasn1-6:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db pkg-config po-debconf r-mathlib:arm64 sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 148 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 535 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [968 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-7 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190821-2 [2771 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-4cross1 [192 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-4cross1 [6536 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3 [16.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-4cross1 [188 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-10cross6 [1312 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-4cross1 [34.1 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-4cross1 [76.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-4cross1 [24.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-4cross1 [8640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-4cross1 [347 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-4cross1 [122 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-4cross1 [267 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-4cross1 [416 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-4cross1 [117 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-4cross1 [887 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-4cross1 [6893 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3 [1456 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.2.9-2cross6 [1310 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-10cross6 [2324 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-4cross1 [1632 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-4cross1 [7112 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3 [1176 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.7 [6608 B] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5.4 [1035 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 63.2-2 [189 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-7 [34.1 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-10 [2521 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-7 [354 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-7 [8832 B] Get:82 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 9.2.1-7 [322 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main arm64 libblas-dev arm64 3.8.0-2 [105 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-7 [78.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-7 [24.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-7 [122 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-7 [274 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-7 [455 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-7 [118 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-7 [886 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.2.9-2 [1214 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-10 [2324 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-7 [1633 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.67-dev arm64 1.67.0-13 [8386 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.67.0.2 [4188 B] Get:97 http://debian.oregonstate.edu/debian unstable/main arm64 libicu63 arm64 63.2-2 [8157 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-regex1.67.0 arm64 1.67.0-13 [457 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main arm64 libicu-dev arm64 63.2-2 [9065 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-regex1.67-dev arm64 1.67.0-13 [515 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-2 [46.3 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1+b1 [88.4 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-iostreams1.67.0 arm64 1.67.0-13 [247 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-iostreams1.67-dev arm64 1.67.0-13 [255 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-iostreams-dev arm64 1.67.0.2 [3956 B] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.67.0 arm64 1.67.0-13 [343 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.67-dev arm64 1.67.0-13 [383 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options-dev arm64 1.67.0.2 [3980 B] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.45.3-4 [70.3 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.1.2+dfsg-4 [226 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle6 arm64 3.5.1+really3.4.1-1 [225 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed4 arm64 3.5.1+really3.4.1-1 [138 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-2 [381 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.2.0-1 [82.0 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libffi6 arm64 3.2.1-9 [19.3 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.23.16.1-2 [303 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.14-2 [51.9 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.6.9-4 [1094 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.17-6 [63.8 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.17-6 [117 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1c-1 [1376 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.17-6 [350 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.17-6 [148 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.6 [622 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1 [69.2 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1 [105 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.48+dfsg-1 [217 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.39.2-1 [79.3 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libgpg-error0 arm64 1.36-7 [68.8 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libgcrypt20 arm64 1.8.5-2 [488 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.65.3-1 [315 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.3-1 [80.2 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 libgslcblas0 arm64 2.5+dfsg-6+b1 [69.9 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libgsl23 arm64 2.5+dfsg-6+b1 [761 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libgsl-dev arm64 2.5+dfsg-6+b1 [939 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.4-1+b1 [149 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 libhts2 arm64 1.9-11 [277 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.4-1+b1 [209 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1+b1 [208 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.9-11 [4338 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 r-mathlib arm64 3.6.1-4 [1965 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 108 MB in 3s (31.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 13051 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../007-gcc-9-base_9.2.1-7_arm64.deb ... Unpacking gcc-9-base:arm64 (9.2.1-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../010-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../014-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../020-binutils-aarch64-linux-gnu_2.32.51.20190821-2_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.32.51.20190821-2) ... Selecting previously unselected package gcc-9-aarch64-linux-gnu-base:amd64. Preparing to unpack .../021-gcc-9-aarch64-linux-gnu-base_9.2.1-4cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu-base:amd64 (9.2.1-4cross1) ... Selecting previously unselected package cpp-9-aarch64-linux-gnu. Preparing to unpack .../022-cpp-9-aarch64-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking cpp-9-aarch64-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../023-cpp-aarch64-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package cross-config. Preparing to unpack .../024-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../025-gcc-9-cross-base_9.2.1-4cross1_all.deb ... Unpacking gcc-9-cross-base (9.2.1-4cross1) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../026-libc6-arm64-cross_2.28-10cross6_all.deb ... Unpacking libc6-arm64-cross (2.28-10cross6) ... Selecting previously unselected package libgcc1-arm64-cross. Preparing to unpack .../027-libgcc1-arm64-cross_1%3a9.2.1-4cross1_all.deb ... Unpacking libgcc1-arm64-cross (1:9.2.1-4cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../028-libgomp1-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libgomp1-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package libitm1-arm64-cross. Preparing to unpack .../029-libitm1-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libitm1-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package libatomic1-arm64-cross. Preparing to unpack .../030-libatomic1-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libatomic1-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package libasan5-arm64-cross. Preparing to unpack .../031-libasan5-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libasan5-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package liblsan0-arm64-cross. Preparing to unpack .../032-liblsan0-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking liblsan0-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package libtsan0-arm64-cross. Preparing to unpack .../033-libtsan0-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libtsan0-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package libstdc++6-arm64-cross. Preparing to unpack .../034-libstdc++6-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libstdc++6-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package libubsan1-arm64-cross. Preparing to unpack .../035-libubsan1-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libubsan1-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package libgcc-9-dev-arm64-cross. Preparing to unpack .../036-libgcc-9-dev-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libgcc-9-dev-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package gcc-9-aarch64-linux-gnu. Preparing to unpack .../037-gcc-9-aarch64-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../038-gcc-aarch64-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package linux-libc-dev-arm64-cross. Preparing to unpack .../039-linux-libc-dev-arm64-cross_5.2.9-2cross6_all.deb ... Unpacking linux-libc-dev-arm64-cross (5.2.9-2cross6) ... Selecting previously unselected package libc6-dev-arm64-cross. Preparing to unpack .../040-libc6-dev-arm64-cross_2.28-10cross6_all.deb ... Unpacking libc6-dev-arm64-cross (2.28-10cross6) ... Selecting previously unselected package libstdc++-9-dev-arm64-cross. Preparing to unpack .../041-libstdc++-9-dev-arm64-cross_9.2.1-4cross1_all.deb ... Unpacking libstdc++-9-dev-arm64-cross (9.2.1-4cross1) ... Selecting previously unselected package g++-9-aarch64-linux-gnu. Preparing to unpack .../042-g++-9-aarch64-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking g++-9-aarch64-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../043-g++-aarch64-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking g++-aarch64-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../044-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../045-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../046-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../047-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../048-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../049-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../050-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../051-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../052-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../053-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../054-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../055-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../056-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../057-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../058-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../059-crossbuild-essential-arm64_12.7_all.deb ... Unpacking crossbuild-essential-arm64 (12.7) ... Selecting previously unselected package libtool. Preparing to unpack .../060-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../061-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../062-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../063-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../064-libfile-stripnondeterminism-perl_1.6.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../065-dh-strip-nondeterminism_1.6.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.0-1) ... Selecting previously unselected package libelf1:amd64. 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Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-9-base:arm64 (9.2.1-7) ... Setting up libatomic1-arm64-cross (9.2.1-4cross1) ... Setting up libgcc1-arm64-cross (1:9.2.1-4cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up liblsan0-arm64-cross (9.2.1-4cross1) ... Setting up libgomp1-arm64-cross (9.2.1-4cross1) ... Setting up libtool (2.4.6-11) ... Setting up libtsan0-arm64-cross (9.2.1-4cross1) ... Setting up m4 (1.4.18-2) ... Setting up libc6-dev-arm64-cross (2.28-10cross6) ... Setting up libasan5-arm64-cross (9.2.1-4cross1) ... Setting up libstdc++6-arm64-cross (9.2.1-4cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (9.2.1-4cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libubsan1-arm64-cross (9.2.1-4cross1) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-4cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-9-aarch64-linux-gnu (9.2.1-4cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.2.1-4cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.7) ... Setting up libgcc1:arm64 (1:9.2.1-7) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.28-10) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up libtasn1-6:arm64 (4.14-2) ... Setting up libc6-dev:arm64 (2.28-10) ... Setting up libbz2-1.0:arm64 (1.0.8-2) ... Setting up libdb5.3:arm64 (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:arm64 (9.2.1-7) ... Setting up liblsan0:arm64 (9.2.1-7) ... Setting up libitm1:arm64 (9.2.1-7) ... Setting up libtsan0:arm64 (9.2.1-7) ... Setting up libboost-program-options1.67.0:arm64 (1.67.0-13) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up liblzma5:arm64 (5.2.4-1+b1) ... Setting up libgpg-error0:arm64 (1.36-7) ... Setting up libgslcblas0:arm64 (2.5+dfsg-6+b1) ... Setting up libssl1.1:arm64 (1.1.1c-1) ... Setting up libnghttp2-14:arm64 (1.39.2-1) ... Setting up libunistring2:arm64 (0.9.10-2) ... Setting up libdeflate0:arm64 (1.3-1) ... Setting up libgcrypt20:arm64 (1.8.5-2) ... Setting up debhelper (12.5.4) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:arm64 (3.2.1-9) ... Setting up libidn2-0:arm64 (2.2.0-1) ... Setting up libcom-err2:arm64 (1.45.3-4) ... Setting up libgomp1:arm64 (9.2.1-7) ... Setting up libicu63:arm64 (63.2-2) ... Setting up libkrb5support0:arm64 (1.17-6) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1) ... Setting up libasan5:arm64 (9.2.1-7) ... Setting up libgsl23:arm64 (2.5+dfsg-6+b1) ... Setting up libgmp10:arm64 (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:arm64 (0.23.16.1-2) ... Setting up libatomic1:arm64 (9.2.1-7) ... Setting up libboost-iostreams1.67.0:arm64 (1.67.0-13) ... Setting up libk5crypto3:arm64 (1.17-6) ... Setting up libnettle6:arm64 (3.5.1+really3.4.1-1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1) ... Setting up libgfortran5:arm64 (9.2.1-7) ... Setting up liblzma-dev:arm64 (5.2.4-1+b1) ... Setting up libubsan1:arm64 (9.2.1-7) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up r-mathlib:arm64 (3.6.1-4) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up libkrb5-3:arm64 (1.17-6) ... Setting up libicu-dev:arm64 (63.2-2) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up libgsl-dev:arm64 (2.5+dfsg-6+b1) ... Setting up libboost-regex1.67.0:arm64 (1.67.0-13) ... Setting up libhogweed4:arm64 (3.5.1+really3.4.1-1) ... Setting up libgcc-9-dev:arm64 (9.2.1-7) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libgnutls30:arm64 (3.6.9-4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:arm64 (1.17-6) ... Setting up libblas-dev:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libstdc++-9-dev:arm64 (9.2.1-7) ... Setting up libldap-2.4-2:arm64 (2.4.48+dfsg-1) ... Setting up libcurl3-gnutls:arm64 (7.65.3-1) ... Setting up libboost1.67-dev:arm64 (1.67.0-13) ... Setting up libhts2:arm64 (1.9-11) ... Setting up libboost-program-options1.67-dev:arm64 (1.67.0-13) ... Setting up libboost-regex1.67-dev:arm64 (1.67.0-13) ... Setting up libhts-dev:arm64 (1.9-11) ... Setting up libboost-program-options-dev:arm64 (1.67.0.2) ... Setting up libboost-dev:arm64 (1.67.0.2) ... Setting up libboost-iostreams1.67-dev:arm64 (1.67.0-13) ... Setting up libboost-iostreams-dev:arm64 (1.67.0.2) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190821-2 dpkg-dev_1.19.7 g++-8_8.3.0-21 g++-9_9.2.1-7 gcc-8_8.3.0-21 gcc-9_9.2.1-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-7 libstdc++-9-dev-arm64-cross_9.2.1-4cross1 libstdc++6_9.2.1-7 libstdc++6-arm64-cross_9.2.1-4cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 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fastqtl Binary: fastqtl, fastqtl-doc Architecture: any all Version: 2.184+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: http://fastqtl.sourceforge.net/ Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/fastqtl Vcs-Git: https://salsa.debian.org/med-team/fastqtl.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev Package-List: fastqtl deb science optional arch=any fastqtl-doc deb doc optional arch=all Checksums-Sha1: a334f112c2fc8e39613d6dfbfdf390c54a8e6ccd 17122060 fastqtl_2.184+dfsg.orig.tar.xz 9cab87b33fce6ceddd45f2866350351b74ef717c 19248 fastqtl_2.184+dfsg-6.debian.tar.xz Checksums-Sha256: 5f40bf8d9dbce2cd738080ebe28bf2b3892b75c9a8446e5e1d8c293d4b382b65 17122060 fastqtl_2.184+dfsg.orig.tar.xz 4736664d6a956cfe285abeaa5e5aee541ae3999151616d0c7a4a8e2b4cb5ed28 19248 fastqtl_2.184+dfsg-6.debian.tar.xz Files: 8db4d2905b2f2b659e40f70a6ccdfa8d 17122060 fastqtl_2.184+dfsg.orig.tar.xz 2f18076bd156e26acd4017f2b182314e 19248 fastqtl_2.184+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltPjj0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGt6xAAkmN7YSW+JxlTWIaVMnyYqaJ6dZlC7qpR d4FHS+eWHYtFo85Gdd6o7UtTfMj6BFVU5HbRUZj3yLcMxdX6FyS5iHBSQKgKD3oE s6LKL2cIfj+Jie8BHm5jKH6AgtqIyCBEQYjbjvZwOY5WzRdL87aeA6FMbr/MqRXU 6zTTZJO3/lxVuZ4TK8AwqHYbM+1/dnV8w3Q8O7KCgLBpSL+i0Bir7XXb3a9pCXGV efRB9duIPxVacXpvi7/9cY/MaAURUo8GgTQ7JAcHMEQoqfRoMZeA+7P4P2fVNGFS eXlk6MCO6QPpONnLFmdZFIhzGrBGjMw9b94NP/yIqbiFzxrlrImLqKZHfQmcy1QI +vXC3W8a1dGCYL+KYGpwMhAeFxUDk8KXXzrb7GZI3Vj0VpfG1h3TYW4y4QBhXTEi qeRzp1mymdMywnzaCZ7eXBMBH6hk5sb7cJYq1DtQdArRl48nZvT56FboloRMiu9r dwcSVqpPnnfcUEL6DfO77mtspEVZVsoFEXQHldCfe2m7uOKJMRWvQ+vztizxjEXk D4QTUbRTqBArgipS45m9QVjPK/oXsgaUXp308O/CXypEla0e0Qt570NlvEzraHnR 7HG5kF31jBcz7O0XabSGbfS4w3IB0oB7zB/vxn+qxAvl8JZ6DxHpEOPpLu57Lx6u h/ZSPhQWacg= =yR22 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 18 19:00:13 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastqtl_2.184+dfsg-6.dsc dpkg-source: info: extracting fastqtl in /<> dpkg-source: info: unpacking fastqtl_2.184+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqtl_2.184+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch dpkg-source: info: applying 03_Reproducible_builds.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-163c4b68-3f1e-4d5c-8ed7-8f4e95409d87 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p /<>/obj/ mkdir -p /<>/bin/ /usr/bin/make CXXFLAGS='-g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' make[2]: Entering directory '/<>' g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc In file included from src/analysisMapping.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc In file included from src/analysisNominal.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc In file included from src/analysisPermutation.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc In file included from src/analysisPermutationInteraction.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc In file included from src/management.cpp:20: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc src/utils/tabix.cpp: In constructor ‘Tabix::Tabix(std::string&)’: src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here 243 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here 243 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc cd && make && cd ../.. /bin/sh: 1: cd: can't cd to /sbuild-nonexistent make[2]: *** [Makefile:91: -lhts] Error 2 make[2]: Leaving directory '/<>' make[1]: *** [debian/rules:14: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:9: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-09-09T03:35:53Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 83528 Build-Time: 125 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 28 Job: fastqtl_2.184+dfsg-6 Machine Architecture: amd64 Package: fastqtl Package-Time: 165 Source-Version: 2.184+dfsg-6 Space: 83528 Status: attempted Version: 2.184+dfsg-6 -------------------------------------------------------------------------------- Finished at 2019-09-09T03:35:53Z Build needed 00:02:45, 83528k disk space