sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | fastqtl 2.184+dfsg-6 (armel) Sat, 16 Feb 2019 23:57:52 +0000 | +==============================================================================+ Package: fastqtl Version: 2.184+dfsg-6 Source Version: 2.184+dfsg-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-18b49cc3-b5a5-4e84-ba7f-cd235fd51772' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-16-1412.14.pdiff [25.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-16-2012.12.pdiff [12.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-02-16-2012.12.pdiff [12.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-16-1412.14.pdiff [32.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-16-2012.12.pdiff [10.7 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-02-16-2012.12.pdiff [10.7 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel Packages [8059 kB] Fetched 8437 kB in 2s (5126 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-8 findutils g++-8 gcc-8 gcc-8-base libacl1 libasan5 libatomic1 libattr1 libcc1-0 libgcc-8-dev libgcc1 libgomp1 libitm1 liblsan0 libmpx2 libp11-kit0 libquadmath0 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.8 MB of archives. After this operation, 52.2 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 8.2.0-21 [46.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 8.2.0-21 [75.7 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 8.2.0-21 [27.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 8.2.0-21 [8876 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5 amd64 8.2.0-21 [362 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 8.2.0-21 [131 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0 amd64 8.2.0-21 [283 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 8.2.0-21 [120 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libmpx2 amd64 8.2.0-21 [11.4 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 8.2.0-21 [133 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-base amd64 8.2.0-21 [190 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 8.2.0-21 [393 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8 amd64 8.2.0-21 [9744 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev amd64 8.2.0-21 [1532 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev amd64 8.2.0-21 [2297 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8 amd64 8.2.0-21 [9442 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8 amd64 8.2.0-21 [8913 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1 amd64 1:8.2.0-21 [40.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libattr1 amd64 1:2.4.47-4 [19.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libacl1 amd64 2.2.52-5 [30.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libp11-kit0 amd64 0.23.15-2 [318 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.8 MB in 1s (62.1 MB/s) (Reading database ... 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Setting up libtsan0:amd64 (8.2.0-21) ... Setting up liblsan0:amd64 (8.2.0-21) ... Setting up libmpx2:amd64 (8.2.0-21) ... Setting up libasan5:amd64 (8.2.0-21) ... Setting up libitm1:amd64 (8.2.0-21) ... Setting up libubsan1:amd64 (8.2.0-21) ... Setting up libgcc-8-dev:amd64 (8.2.0-21) ... Setting up libstdc++-8-dev:amd64 (8.2.0-21) ... Setting up gcc-8 (8.2.0-21) ... Setting up g++-8 (8.2.0-21) ... Processing triggers for libc-bin (2.28-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fastqtl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastqtl.git Please use: git clone https://salsa.debian.org/med-team/fastqtl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.1 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-6 (dsc) [2186 B] Get:2 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-6 (tar) [17.1 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-6 (diff) [19.2 kB] Fetched 17.1 MB in 0s (81.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fastqtl-Cf3TcU/fastqtl-2.184+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-Cf3TcU' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-CgNArv/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-CgNArv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CgNArv/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-CgNArv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CgNArv/apt_archive ./ Sources [359 B] Get:5 copy:/<>/resolver-CgNArv/apt_archive ./ Packages [450 B] Fetched 1766 B in 0s (102 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libmpx2-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabi gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sbuild-build-depends-core-dummy:armel sensible-utils ucf 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 154 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CgNArv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-2 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-2 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-2 [66.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.31.1-12 [2830 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi-base amd64 8.2.0-20cross1 [190 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabi amd64 8.2.0-20cross1 [6557 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:8.2.0-2 [16.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.2.0-20cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.28-4cross1 [1188 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:8.2.0-20cross1 [38.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 8.2.0-20cross1 [65.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 8.2.0-20cross1 [8812 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 8.2.0-20cross1 [287 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 8.2.0-20cross1 [313 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 8.2.0-20cross1 [103 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armel-cross all 8.2.0-20cross1 [605 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi amd64 8.2.0-20cross1 [6976 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:8.2.0-2 [1464 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 4.19.13-1cross1 [1196 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.28-4cross1 [2181 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armel-cross all 8.2.0-20cross1 [1539 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabi amd64 8.2.0-20cross1 [7132 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:8.2.0-2 [1176 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.5 [6544 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (59.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11869 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-2_amd64.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-arm-linux-gnueabi. Preparing to unpack .../06-binutils-arm-linux-gnueabi_2.31.1-12_amd64.deb ... Unpacking binutils-arm-linux-gnueabi (2.31.1-12) ... Selecting previously unselected package gcc-8-arm-linux-gnueabi-base:amd64. Preparing to unpack .../07-gcc-8-arm-linux-gnueabi-base_8.2.0-20cross1_amd64.deb ... Unpacking gcc-8-arm-linux-gnueabi-base:amd64 (8.2.0-20cross1) ... Selecting previously unselected package cpp-8-arm-linux-gnueabi. Preparing to unpack .../08-cpp-8-arm-linux-gnueabi_8.2.0-20cross1_amd64.deb ... Unpacking cpp-8-arm-linux-gnueabi (8.2.0-20cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabi. Preparing to unpack .../09-cpp-arm-linux-gnueabi_4%3a8.2.0-2_amd64.deb ... Unpacking cpp-arm-linux-gnueabi (4:8.2.0-2) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-2_all.deb ... Unpacking cross-config (2.6.15-2) ... Selecting previously unselected package gcc-8-cross-base. Preparing to unpack .../11-gcc-8-cross-base_8.2.0-20cross1_all.deb ... Unpacking gcc-8-cross-base (8.2.0-20cross1) ... Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../12-libc6-armel-cross_2.28-4cross1_all.deb ... Unpacking libc6-armel-cross (2.28-4cross1) ... Selecting previously unselected package libgcc1-armel-cross. Preparing to unpack .../13-libgcc1-armel-cross_1%3a8.2.0-20cross1_all.deb ... Unpacking libgcc1-armel-cross (1:8.2.0-20cross1) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../14-libgomp1-armel-cross_8.2.0-20cross1_all.deb ... Unpacking libgomp1-armel-cross (8.2.0-20cross1) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../15-libatomic1-armel-cross_8.2.0-20cross1_all.deb ... Unpacking libatomic1-armel-cross (8.2.0-20cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../16-libstdc++6-armel-cross_8.2.0-20cross1_all.deb ... Unpacking libstdc++6-armel-cross (8.2.0-20cross1) ... Selecting previously unselected package libasan5-armel-cross. Preparing to unpack .../17-libasan5-armel-cross_8.2.0-20cross1_all.deb ... Unpacking libasan5-armel-cross (8.2.0-20cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../18-libubsan1-armel-cross_8.2.0-20cross1_all.deb ... Unpacking libubsan1-armel-cross (8.2.0-20cross1) ... Selecting previously unselected package libgcc-8-dev-armel-cross. Preparing to unpack .../19-libgcc-8-dev-armel-cross_8.2.0-20cross1_all.deb ... Unpacking libgcc-8-dev-armel-cross (8.2.0-20cross1) ... Selecting previously unselected package gcc-8-arm-linux-gnueabi. Preparing to unpack .../20-gcc-8-arm-linux-gnueabi_8.2.0-20cross1_amd64.deb ... Unpacking gcc-8-arm-linux-gnueabi (8.2.0-20cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../21-gcc-arm-linux-gnueabi_4%3a8.2.0-2_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:8.2.0-2) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../22-linux-libc-dev-armel-cross_4.19.13-1cross1_all.deb ... Unpacking linux-libc-dev-armel-cross (4.19.13-1cross1) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../23-libc6-dev-armel-cross_2.28-4cross1_all.deb ... Unpacking libc6-dev-armel-cross (2.28-4cross1) ... Selecting previously unselected package libstdc++-8-dev-armel-cross. Preparing to unpack .../24-libstdc++-8-dev-armel-cross_8.2.0-20cross1_all.deb ... Unpacking libstdc++-8-dev-armel-cross (8.2.0-20cross1) ... Selecting previously unselected package g++-8-arm-linux-gnueabi. Preparing to unpack .../25-g++-8-arm-linux-gnueabi_8.2.0-20cross1_amd64.deb ... Unpacking g++-8-arm-linux-gnueabi (8.2.0-20cross1) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../26-g++-arm-linux-gnueabi_4%3a8.2.0-2_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:8.2.0-2) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../27-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../28-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../29-libicu63_63.1-6_amd64.deb ... Unpacking libicu63:amd64 (63.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../30-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../31-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../32-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../33-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../34-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../35-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../36-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../37-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../38-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../39-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../40-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../41-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../42-crossbuild-essential-armel_12.5_all.deb ... Unpacking crossbuild-essential-armel (12.5) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armel. Preparing to unpack .../43-sbuild-build-depends-core-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Setting up gcc-8-cross-base (8.2.0-20cross1) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libfile-which-perl (1.23-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up linux-libc-dev-armel-cross (4.19.13-1cross1) ... Setting up libyaml-perl (1.27-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:amd64 (1:5.35-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up sensible-utils (0.0.12) ... Setting up cross-config (2.6.15-2) ... Setting up libc6-armel-cross (2.28-4cross1) ... Setting up libio-string-perl (1.08-3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-8-arm-linux-gnueabi-base:amd64 (8.2.0-20cross1) ... Setting up binutils-arm-linux-gnueabi (2.31.1-12) ... Setting up libatomic1-armel-cross (8.2.0-20cross1) ... Setting up libgomp1-armel-cross (8.2.0-20cross1) ... Setting up libgcc1-armel-cross (1:8.2.0-20cross1) ... Setting up libc6-dev-armel-cross (2.28-4cross1) ... Setting up file (1:5.35-2) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-armel-cross (8.2.0-20cross1) ... Setting up cpp-8-arm-linux-gnueabi (8.2.0-20cross1) ... Setting up libasan5-armel-cross (8.2.0-20cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cpp-arm-linux-gnueabi (4:8.2.0-2) ... Setting up libubsan1-armel-cross (8.2.0-20cross1) ... Setting up libgcc-8-dev-armel-cross (8.2.0-20cross1) ... Setting up gcc-8-arm-linux-gnueabi (8.2.0-20cross1) ... Setting up gcc-arm-linux-gnueabi (4:8.2.0-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-armel-cross (8.2.0-20cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-8-arm-linux-gnueabi (8.2.0-20cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up g++-arm-linux-gnueabi (4:8.2.0-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-armel (12.5) ... Setting up sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-CgNArv/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-CgNArv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CgNArv/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CgNArv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CgNArv/apt_archive ./ Sources [481 B] Get:5 copy:/<>/resolver-CgNArv/apt_archive ./ Packages [570 B] Fetched 2014 B in 0s (0 B/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-CgNArv/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armel. (Reading database ... 14914 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev dpkg-deb: building package 'sbuild-build-depends-fastqtl-dummy' in '/<>/resolver-CgNArv/apt_archive/sbuild-build-depends-fastqtl-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-fastqtl-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-CgNArv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CgNArv/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CgNArv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CgNArv/apt_archive ./ Sources [691 B] Get:5 copy:/<>/resolver-CgNArv/apt_archive ./ Packages [776 B] Fetched 2430 B in 0s (0 B/s) Reading package lists... Reading package lists... Install fastqtl build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libblas-dev:armel libblas3:armel libboost-dev:armel libboost-iostreams-dev:armel libboost-iostreams1.67-dev:armel libboost-iostreams1.67.0:armel libboost-program-options-dev:armel libboost-program-options1.67-dev:armel libboost-program-options1.67.0:armel libboost-regex1.67-dev:armel libboost-regex1.67.0:armel libboost1.67-dev:armel libbsd0 libbz2-1.0:armel libc6:armel libc6-dev:armel libcom-err2:armel libcroco3 libcurl3-gnutls:armel libdb5.3:armel libdeflate0:armel libeigen3-dev libelf1 libffi6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgcrypt20:armel libgfortran5:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgpg-error0:armel libgsl-dev:armel libgsl23:armel libgslcblas0:armel libgssapi-krb5-2:armel libhogweed4:armel libhts-dev:armel libhts2:armel libicu-dev:armel libicu63:armel libidn2-0:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel libldap-common liblzma-dev:armel liblzma5:armel libncurses6 libnettle6:armel libnghttp2-14:armel libp11-kit0:armel libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libssh2-1:armel libssl1.1:armel libstdc++-8-dev:armel libstdc++6:armel libtasn1-6:armel libtool libubsan1:armel libuchardet0 libunistring2:armel linux-libc-dev:armel m4 man-db pkg-config po-debconf r-mathlib:armel zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:armel libboost-doc:armel libboost1.67-doc:armel libboost-atomic1.67-dev:armel libboost-chrono1.67-dev:armel libboost-container1.67-dev:armel libboost-context1.67-dev:armel libboost-coroutine1.67-dev:armel libboost-date-time1.67-dev:armel libboost-exception1.67-dev:armel libboost-fiber1.67-dev:armel libboost-filesystem1.67-dev:armel libboost-graph1.67-dev:armel libboost-graph-parallel1.67-dev:armel libboost-locale1.67-dev:armel libboost-log1.67-dev:armel libboost-math1.67-dev:armel libboost-mpi1.67-dev:armel libboost-mpi-python1.67-dev:armel libboost-numpy1.67-dev:armel libboost-python1.67-dev:armel libboost-random1.67-dev:armel libboost-serialization1.67-dev:armel libboost-signals1.67-dev:armel libboost-stacktrace1.67-dev:armel libboost-system1.67-dev:armel libboost-test1.67-dev:armel libboost-thread1.67-dev:armel libboost-timer1.67-dev:armel libboost-type-erasure1.67-dev:armel libboost-wave1.67-dev:armel libboost1.67-tools-dev:armel libmpfrc++-dev:armel libntl-dev:armel glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libeigen3-doc libmpfrc++-dev rng-tools:armel gnutls-bin:armel gsl-ref-psdoc:armel | gsl-doc-pdf:armel | gsl-doc-info:armel | gsl-ref-html:armel krb5-doc:armel krb5-user:armel icu-doc:armel liblzma-doc:armel libstdc++-8-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:armel krb5-locales:armel libgpm2 publicsuffix:armel libsasl2-modules:armel libltdl-dev libmail-sendmail-perl r-base-core:armel r-base-dev:armel The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libblas-dev:armel libblas3:armel libboost-dev:armel libboost-iostreams-dev:armel libboost-iostreams1.67-dev:armel libboost-iostreams1.67.0:armel libboost-program-options-dev:armel libboost-program-options1.67-dev:armel libboost-program-options1.67.0:armel libboost-regex1.67-dev:armel libboost-regex1.67.0:armel libboost1.67-dev:armel libbsd0 libbz2-1.0:armel libc6:armel libc6-dev:armel libcom-err2:armel libcroco3 libcurl3-gnutls:armel libdb5.3:armel libdeflate0:armel libeigen3-dev libelf1 libffi6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgcrypt20:armel libgfortran5:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgpg-error0:armel libgsl-dev:armel libgsl23:armel libgslcblas0:armel libgssapi-krb5-2:armel libhogweed4:armel libhts-dev:armel libhts2:armel libicu-dev:armel libicu63:armel libidn2-0:armel libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel libldap-common liblzma-dev:armel liblzma5:armel libncurses6 libnettle6:armel libnghttp2-14:armel libp11-kit0:armel libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libssh2-1:armel libssl1.1:armel libstdc++-8-dev:armel libstdc++6:armel libtasn1-6:armel libtool libubsan1:armel libuchardet0 libunistring2:armel linux-libc-dev:armel m4 man-db pkg-config po-debconf r-mathlib:armel sbuild-build-depends-fastqtl-dummy:armel zlib1g:armel zlib1g-dev:armel 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 63.4 MB of archives. After this operation, 350 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CgNArv/apt_archive ./ sbuild-build-depends-fastqtl-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-9 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.1-1 [19.7 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.1-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1 [1015 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main armel gcc-8-base armel 8.2.0-21 [190 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 63.1-6 [188 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:8.2.0-21 [38.4 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.28-7 [2398 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 8.2.0-21 [324 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 8.2.0-21 [318 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 8.2.0-21 [8964 B] Get:36 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1 [86.5 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main armel libgfortran5 armel 8.2.0-21 [216 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armel libblas3 armel 3.8.0-2 [169 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armel libblas-dev armel 3.8.0-2 [175 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 8.2.0-21 [67.2 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 8.2.0-21 [103 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armel libgcc-8-dev armel 8.2.0-21 [603 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 4.19.20-1 [1124 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.28-7 [2185 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-8-dev armel 8.2.0-21 [1571 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armel libboost1.67-dev armel 1.67.0-13 [8386 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main armel libboost-dev armel 1.67.0.1 [3860 B] Get:48 http://debian.oregonstate.edu/debian unstable/main armel libicu63 armel 63.1-6 [7978 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main armel libboost-regex1.67.0 armel 1.67.0-13 [431 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main armel libicu-dev armel 63.1-6 [8918 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main armel libboost-regex1.67-dev armel 1.67.0-13 [533 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main armel libbz2-1.0 armel 1.0.6-9 [44.5 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main armel libboost-iostreams1.67.0 armel 1.67.0-13 [245 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main armel libboost-iostreams1.67-dev armel 1.67.0-13 [254 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main armel libboost-iostreams-dev armel 1.67.0.1 [3632 B] Get:56 http://debian.oregonstate.edu/debian unstable/main armel libboost-program-options1.67.0 armel 1.67.0-13 [331 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main armel libboost-program-options1.67-dev armel 1.67.0-13 [380 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main armel libboost-program-options-dev armel 1.67.0.1 [3656 B] Get:59 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.44.5-1 [67.5 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main armel libgmp10 armel 2:6.1.2+dfsg-4 [197 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main armel libnettle6 armel 3.4.1-1 [224 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main armel libhogweed4 armel 3.4.1-1 [129 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main armel libunistring2 armel 0.9.10-1 [354 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main armel libidn2-0 armel 2.0.5-1 [73.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main armel libffi6 armel 3.2.1-9 [18.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main armel libp11-kit0 armel 0.23.15-2 [298 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main armel libtasn1-6 armel 4.13-3 [46.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main armel libgnutls30 armel 3.6.6-2 [1036 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6-2 [13.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.17-1 [62.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.17-1 [118 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1a-1 [1263 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.17-1 [319 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.17-1 [136 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armel libdb5.3 armel 5.3.28+dfsg1-0.3 [572 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-modules-db armel 2.1.27+dfsg-1 [67.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-2 armel 2.1.27+dfsg-1 [98.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main armel libldap-2.4-2 armel 2.4.47+dfsg-3 [200 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armel libnghttp2-14 armel 1.36.0-2 [73.6 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libpsl5 armel 0.20.2-2 [52.5 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2 [54.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel libgpg-error0 armel 1.35-1 [62.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libgcrypt20 armel 1.8.4-5 [482 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel libssh2-1 armel 1.8.0-2 [126 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libcurl3-gnutls armel 7.64.0-1 [291 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libdeflate0 armel 1.2-1 [43.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libgslcblas0 armel 2.5+dfsg-6 [124 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libgsl23 armel 2.5+dfsg-6 [854 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libgsl-dev armel 2.5+dfsg-6 [1078 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel liblzma5 armel 5.2.4-1 [144 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel libhts2 armel 1.9-10 [258 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel liblzma-dev armel 5.2.4-1 [204 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel zlib1g-dev armel 1:1.2.11.dfsg-1 [206 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libhts-dev armel 1.9-10 [4285 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel r-mathlib armel 3.5.2-1 [1856 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.4 MB in 1s (52.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14914 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. 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Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up gcc-8-base:armel (8.2.0-21) ... Setting up icu-devtools (63.1-6) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libfile-stripnondeterminism-perl (1.1.1-1) ... Setting up libtool (2.4.6-9) ... Setting up gettext (0.19.8.1-9) ... Setting up libeigen3-dev (3.3.7-1) ... Setting up groff-base (1.22.4-2) ... Setting up autoconf (2.69-11) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up po-debconf (1.0.21) ... Setting up libc6:armel (2.28-7) ... Setting up libbz2-1.0:armel (1.0.6-9) ... Setting up libtasn1-6:armel (4.13-3) ... Setting up libgpg-error0:armel (1.35-1) ... Setting up libgmp10:armel (2:6.1.2+dfsg-4) ... Setting up libssl1.1:armel (1.1.1a-1) ... Setting up libkeyutils1:armel (1.6-2) ... Setting up libc6-dev:armel (2.28-7) ... Setting up libgcc1:armel (1:8.2.0-21) ... Setting up libcom-err2:armel (1.44.5-1) ... Setting up libgomp1:armel (8.2.0-21) ... Setting up libatomic1:armel (8.2.0-21) ... Setting up libunistring2:armel (0.9.10-1) ... Setting up libnettle6:armel (3.4.1-1) ... Setting up liblzma5:armel (5.2.4-1) ... Setting up libidn2-0:armel (2.0.5-1) ... Setting up dh-autoreconf (19) ... Setting up libnghttp2-14:armel (1.36.0-2) ... Setting up libgcrypt20:armel (1.8.4-5) ... Setting up libdb5.3:armel (5.3.28+dfsg1-0.3) ... Setting up r-mathlib:armel (3.5.2-1) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1) ... Setting up libdeflate0:armel (1.2-1) ... Setting up libpsl5:armel (0.20.2-2) ... Setting up libsasl2-modules-db:armel (2.1.27+dfsg-1) ... Setting up libsasl2-2:armel (2.1.27+dfsg-1) ... Setting up libkrb5support0:armel (1.17-1) ... Setting up libhogweed4:armel (3.4.1-1) ... Setting up libssh2-1:armel (1.8.0-2) ... Setting up libstdc++6:armel (8.2.0-21) ... Setting up libffi6:armel (3.2.1-9) ... Setting up liblzma-dev:armel (5.2.4-1) ... Setting up libgslcblas0:armel (2.5+dfsg-6) ... Setting up libasan5:armel (8.2.0-21) ... Setting up libgfortran5:armel (8.2.0-21) ... Setting up zlib1g-dev:armel (1:1.2.11.dfsg-1) ... Setting up libubsan1:armel (8.2.0-21) ... Setting up debhelper (12.1) ... Setting up libk5crypto3:armel (1.17-1) ... Setting up libboost-iostreams1.67.0:armel (1.67.0-13) ... Setting up libicu63:armel (63.1-6) ... Setting up libgsl23:armel (2.5+dfsg-6) ... Setting up libgsl-dev:armel (2.5+dfsg-6) ... Setting up libicu-dev:armel (63.1-6) ... Setting up libboost-program-options1.67.0:armel (1.67.0-13) ... Setting up dh-strip-nondeterminism (1.1.1-1) ... Setting up libblas3:armel (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabi/libblas.so.3 (libblas.so.3-arm-linux-gnueabi) in auto mode Setting up libp11-kit0:armel (0.23.15-2) ... Setting up libgcc-8-dev:armel (8.2.0-21) ... Setting up libkrb5-3:armel (1.17-1) ... Setting up libboost-regex1.67.0:armel (1.67.0-13) ... Setting up libstdc++-8-dev:armel (8.2.0-21) ... Setting up libblas-dev:armel (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/blas/libblas.so to provide /usr/lib/arm-linux-gnueabi/libblas.so (libblas.so-arm-linux-gnueabi) in auto mode Setting up libgnutls30:armel (3.6.6-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:armel (1.17-1) ... Setting up libldap-2.4-2:armel (2.4.47+dfsg-3) ... Setting up libboost1.67-dev:armel (1.67.0-13) ... Setting up libboost-dev:armel (1.67.0.1) ... Setting up libcurl3-gnutls:armel (7.64.0-1) ... Setting up libboost-regex1.67-dev:armel (1.67.0-13) ... Setting up libboost-program-options1.67-dev:armel (1.67.0-13) ... Setting up libhts2:armel (1.9-10) ... Setting up libboost-program-options-dev:armel (1.67.0.1) ... Setting up libboost-iostreams1.67-dev:armel (1.67.0-13) ... Setting up libhts-dev:armel (1.9-10) ... Setting up libboost-iostreams-dev:armel (1.67.0.1) ... Setting up sbuild-build-depends-fastqtl-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-7) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-12 dpkg-dev_1.19.4 g++-8_8.2.0-21 gcc-8_8.2.0-21 libc6-dev_2.28-7 libstdc++-8-dev_8.2.0-21 libstdc++-8-dev-armel-cross_8.2.0-20cross1 libstdc++6_8.2.0-21 libstdc++6-armel-cross_8.2.0-20cross1 linux-libc-dev_4.19.20-1 Package versions: adduser_3.118 apt_1.8.0~rc3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-12 binutils-arm-linux-gnueabi_2.31.1-12 binutils-common_2.31.1-12 binutils-x86-64-linux-gnu_2.31.1-12 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-21 cpp-8-arm-linux-gnueabi_8.2.0-20cross1 cpp-arm-linux-gnueabi_4:8.2.0-2 cross-config_2.6.15-2 crossbuild-essential-armel_12.5 dash_0.5.10.2-5 debconf_1.5.70 debhelper_12.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.6-1 dpkg_1.19.4 dpkg-cross_2.6.15-2 dpkg-dev_1.19.4 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190209-2 g++_4:8.2.0-2 g++-8_8.2.0-21 g++-8-arm-linux-gnueabi_8.2.0-20cross1 g++-arm-linux-gnueabi_4:8.2.0-2 gcc_4:8.2.0-2 gcc-8_8.2.0-21 gcc-8-arm-linux-gnueabi_8.2.0-20cross1 gcc-8-arm-linux-gnueabi-base_8.2.0-20cross1 gcc-8-base_8.2.0-21 gcc-8-cross-base_8.2.0-20cross1 gcc-arm-linux-gnueabi_4:8.2.0-2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 icu-devtools_63.1-6 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-5 libapt-pkg5.0_1.8.0~rc3 libarchive-zip-perl_1.64-1 libasan5_8.2.0-21 libasan5-armel-cross_8.2.0-20cross1 libatomic1_8.2.0-21 libatomic1-armel-cross_8.2.0-20cross1 libattr1_1:2.4.47-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-12 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libboost-dev_1.67.0.1 libboost-iostreams-dev_1.67.0.1 libboost-iostreams1.67-dev_1.67.0-13 libboost-iostreams1.67.0_1.67.0-13 libboost-program-options-dev_1.67.0.1 libboost-program-options1.67-dev_1.67.0-13 libboost-program-options1.67.0_1.67.0-13 libboost-regex1.67-dev_1.67.0-13 libboost-regex1.67.0_1.67.0-13 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-7 libc-dev-bin_2.28-7 libc6_2.28-7 libc6-armel-cross_2.28-4cross1 libc6-dev_2.28-7 libc6-dev-armel-cross_2.28-4cross1 libcap-ng0_0.7.9-2 libcc1-0_8.2.0-21 libcom-err2_1.44.5-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.64.0-1 libdb5.3_5.3.28+dfsg1-0.3 libdebconfclient0_0.247 libdebian-dpkgcross-perl_2.6.15-2 libdeflate0_1.2-1 libdpkg-perl_1.19.4 libeigen3-dev_3.3.7-1 libelf1_0.176-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.1-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.2.0-21 libgcc-8-dev-armel-cross_8.2.0-20cross1 libgcc1_1:8.2.0-21 libgcc1-armel-cross_1:8.2.0-20cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-3 libgdbm6_1.18.1-3 libgfortran5_8.2.0-21 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.2.0-21 libgomp1-armel-cross_8.2.0-20cross1 libgpg-error0_1.35-1 libgsl-dev_2.5+dfsg-6 libgsl23_2.5+dfsg-6 libgslcblas0_2.5+dfsg-6 libgssapi-krb5-2_1.17-1 libhogweed4_3.4.1-1 libhts-dev_1.9-10 libhts2_1.9-10 libicu-dev_63.1-6 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.2.0-21 libk5crypto3_1.17-1 libkeyutils1_1.6-2 libkrb5-3_1.17-1 libkrb5support0_1.17-1 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.2.0-21 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.2.0-21 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.36.0-2 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_8.2.0-21 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-21 libstdc++-8-dev-armel-cross_8.2.0-20cross1 libstdc++6_8.2.0-21 libstdc++6-armel-cross_8.2.0-20cross1 libsystemd0_240-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-9 libtsan0_8.2.0-21 libubsan1_8.2.0-21 libubsan1-armel-cross_8.2.0-20cross1 libuchardet0_0.0.6-3 libudev1_240-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.20-1 linux-libc-dev-armel-cross_4.19.13-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pkg-config_0.29-6 po-debconf_1.0.21 r-mathlib_3.5.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-fastqtl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 18 19:00:13 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastqtl_2.184+dfsg-6.dsc dpkg-source: info: extracting fastqtl in /<>/fastqtl-2.184+dfsg dpkg-source: info: unpacking fastqtl_2.184+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqtl_2.184+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch dpkg-source: info: applying 03_Reproducible_builds.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-18b49cc3-b5a5-4e84-ba7f-cd235fd51772 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>/fastqtl-2.184+dfsg' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/<>/fastqtl-2.184+dfsg' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/fastqtl-2.184+dfsg' mkdir -p /<>/fastqtl-2.184+dfsg/obj/ mkdir -p /<>/fastqtl-2.184+dfsg/bin/ /usr/bin/make CXXFLAGS='-g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' make[2]: Entering directory '/<>/fastqtl-2.184+dfsg' g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc In file included from src/analysisMapping.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc In file included from src/analysisNominal.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc In file included from src/analysisPermutation.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc In file included from src/analysisPermutationInteraction.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc In file included from src/management.cpp:20: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc src/utils/tabix.cpp: In constructor 'Tabix::Tabix(std::__cxx11::string&)': src/utils/tabix.cpp:17:32: warning: 'int bgzf_is_bgzf(const char*)' is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] if ( bgzf_is_bgzf(cfilename)!=1 ) ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); ^~~~~~~~~~~~ src/utils/tabix.cpp:17:32: warning: 'int bgzf_is_bgzf(const char*)' is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] if ( bgzf_is_bgzf(cfilename)!=1 ) ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); ^~~~~~~~~~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc cd && make && cd ../.. /bin/sh: 1: cd: can't cd to /sbuild-nonexistent make[2]: *** [Makefile:91: -lhts] Error 2 make[2]: Leaving directory '/<>/fastqtl-2.184+dfsg' make[1]: *** [debian/rules:14: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/fastqtl-2.184+dfsg' make: *** [debian/rules:9: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-02-17T00:00:45Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 81420 Build-Time: 129 Distribution: unstable Fail-Stage: build Foreign Architectures: armel Host Architecture: armel Install-Time: 28 Job: fastqtl_2.184+dfsg-6 Machine Architecture: amd64 Package: fastqtl Package-Time: 173 Source-Version: 2.184+dfsg-6 Space: 81420 Status: attempted Version: 2.184+dfsg-6 -------------------------------------------------------------------------------- Finished at 2019-02-17T00:00:45Z Build needed 00:02:53, 81420k disk space