sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | fastqtl 2.184+dfsg-7 (mipsel) Fri, 13 Sep 2019 16:37:30 +0000 | +==============================================================================+ Package: fastqtl Version: 2.184+dfsg-7 Source Version: 2.184+dfsg-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b857b250-ce9a-45b5-9336-0c0c79a47da7' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-I8FHG9/resolver-X5oy1B' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-13-0830.13.pdiff [6440 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-13-1414.34.pdiff [29.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-13-1414.34.pdiff [29.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-13-0830.13.pdiff [5818 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-13-1414.34.pdiff [32.7 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-13-1414.34.pdiff [32.7 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [7975 kB] Fetched 8244 kB in 2s (3836 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fastqtl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastqtl.git Please use: git clone https://salsa.debian.org/med-team/fastqtl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.1 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-7 (dsc) [2191 B] Get:2 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-7 (tar) [17.1 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main fastqtl 2.184+dfsg-7 (diff) [19.5 kB] Fetched 17.1 MB in 0s (60.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fastqtl-I8FHG9/fastqtl-2.184+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-I8FHG9' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [457 B] Get:5 copy:/<>/apt_archive ./ Packages [546 B] Fetched 1960 B in 0s (106 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-9-base:mipsel gcc-9-cross-base gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libblas-dev:mipsel libblas3:mipsel libboost-dev:mipsel libboost-iostreams-dev:mipsel libboost-iostreams1.67-dev:mipsel libboost-iostreams1.67.0:mipsel libboost-program-options-dev:mipsel libboost-program-options1.67-dev:mipsel libboost-program-options1.67.0:mipsel libboost-regex1.67-dev:mipsel libboost-regex1.67.0:mipsel libboost1.67-dev:mipsel libbsd0 libbz2-1.0:mipsel libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:mipsel libdb5.3:mipsel libdebian-dpkgcross-perl libdeflate0:mipsel libeigen3-dev libelf1 libffi6:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc1:mipsel libgcc1-mipsel-cross libgcrypt20:mipsel libgfortran5:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgsl-dev:mipsel libgsl23:mipsel libgslcblas0:mipsel libgssapi-krb5-2:mipsel libhogweed4:mipsel libhts-dev:mipsel libhts2:mipsel libicu-dev:mipsel libicu63 libicu63:mipsel libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2:mipsel libldap-common liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libncurses6 libnettle6:mipsel libnghttp2-14:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libsigsegv2 libssh2-1:mipsel libssl1.1:mipsel libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db pkg-config po-debconf r-mathlib:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-9-multilib-mipsel-linux-gnu gcc-9-doc libstdc++6-9-dbg-mipsel-cross gcc-9-multilib-mipsel-linux-gnu libgcc1-dbg-mipsel-cross libgomp1-dbg-mipsel-cross libitm1-dbg-mipsel-cross libatomic1-dbg-mipsel-cross libasan5-dbg-mipsel-cross liblsan0-dbg-mipsel-cross libtsan0-dbg-mipsel-cross libubsan1-dbg-mipsel-cross libquadmath0-dbg-mipsel-cross manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:mipsel libboost-doc:mipsel libboost1.67-doc:mipsel libboost-atomic1.67-dev:mipsel libboost-chrono1.67-dev:mipsel libboost-container1.67-dev:mipsel libboost-context1.67-dev:mipsel libboost-coroutine1.67-dev:mipsel libboost-date-time1.67-dev:mipsel libboost-exception1.67-dev:mipsel libboost-fiber1.67-dev:mipsel libboost-filesystem1.67-dev:mipsel libboost-graph1.67-dev:mipsel libboost-graph-parallel1.67-dev:mipsel libboost-locale1.67-dev:mipsel libboost-log1.67-dev:mipsel libboost-math1.67-dev:mipsel libboost-mpi1.67-dev:mipsel libboost-mpi-python1.67-dev:mipsel libboost-numpy1.67-dev:mipsel libboost-python1.67-dev:mipsel libboost-random1.67-dev:mipsel libboost-serialization1.67-dev:mipsel libboost-signals1.67-dev:mipsel libboost-stacktrace1.67-dev:mipsel libboost-system1.67-dev:mipsel libboost-test1.67-dev:mipsel libboost-thread1.67-dev:mipsel libboost-timer1.67-dev:mipsel libboost-type-erasure1.67-dev:mipsel libboost-wave1.67-dev:mipsel libboost1.67-tools-dev:mipsel libmpfrc++-dev:mipsel libntl-dev:mipsel glibc-doc:mipsel libc-l10n:mipsel locales:mipsel manpages-dev:mipsel libeigen3-doc libmpfrc++-dev rng-tools:mipsel gnutls-bin:mipsel gsl-ref-psdoc:mipsel | gsl-doc-pdf:mipsel | gsl-doc-info:mipsel | gsl-ref-html:mipsel krb5-doc:mipsel krb5-user:mipsel icu-doc:mipsel liblzma-doc:mipsel libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mipsel krb5-locales:mipsel libgpm2 publicsuffix:mipsel libsasl2-modules:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl r-base-core:mipsel r-base-dev:mipsel The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-9-base:mipsel gcc-9-cross-base gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libblas-dev:mipsel libblas3:mipsel libboost-dev:mipsel libboost-iostreams-dev:mipsel libboost-iostreams1.67-dev:mipsel libboost-iostreams1.67.0:mipsel libboost-program-options-dev:mipsel libboost-program-options1.67-dev:mipsel libboost-program-options1.67.0:mipsel libboost-regex1.67-dev:mipsel libboost-regex1.67.0:mipsel libboost1.67-dev:mipsel libbsd0 libbz2-1.0:mipsel libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl3-gnutls:mipsel libdb5.3:mipsel libdebian-dpkgcross-perl libdeflate0:mipsel libeigen3-dev libelf1 libffi6:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc1:mipsel libgcc1-mipsel-cross libgcrypt20:mipsel libgfortran5:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgsl-dev:mipsel libgsl23:mipsel libgslcblas0:mipsel libgssapi-krb5-2:mipsel libhogweed4:mipsel libhts-dev:mipsel libhts2:mipsel libicu-dev:mipsel libicu63 libicu63:mipsel libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2:mipsel libldap-common liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libncurses6 libnettle6:mipsel libnghttp2-14:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libsigsegv2 libssh2-1:mipsel libssl1.1:mipsel libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db pkg-config po-debconf r-mathlib:mipsel sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 505 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.2.1-8 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.32.51.20190821-2cross3 [2288 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.2.1-4cross1 [192 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.2.1-4cross1 [6460 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-3 [16.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.28-10cross7 [1263 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:9.2.1-4cross1 [46.5 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 9.2.1-4cross1 [79.5 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 9.2.1-4cross1 [6696 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.2.1-4cross1 [222 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.2.1-4cross1 [6786 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-3 [1452 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 9.2.1-4cross1 [400 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.2.9-2cross7 [1323 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.28-10cross7 [2321 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.2.1-4cross1 [1700 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.2.1-4cross1 [7040 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-3 [1172 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.7 [6604 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.65-1 [95.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5.4 [1035 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 63.2-2 [189 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc1 mipsel 1:9.2.1-8 [46.4 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.29-1 [2420 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 9.2.1-8 [6720 B] Get:76 http://debian.oregonstate.edu/debian unstable/main mipsel libgfortran5 mipsel 9.2.1-8 [257 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main mipsel libblas3 mipsel 3.8.0-2 [134 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main mipsel libblas-dev mipsel 3.8.0-2 [153 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 9.2.1-8 [81.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.2.1-8 [221 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 9.2.1-8 [438 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.2.9-2 [1228 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.29-1 [2269 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.2.1-8 [1707 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libboost1.67-dev mipsel 1.67.0-13 [8386 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-dev mipsel 1.67.0.2 [4188 B] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libicu63 mipsel 63.2-2 [8203 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-regex1.67.0 mipsel 1.67.0-13 [448 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libicu-dev mipsel 63.2-2 [9304 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-regex1.67-dev mipsel 1.67.0-13 [542 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-1.0 mipsel 1.0.8-2 [45.9 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-1+b1 [88.0 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-iostreams1.67.0 mipsel 1.67.0-13 [246 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-iostreams1.67-dev mipsel 1.67.0-13 [257 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-iostreams-dev mipsel 1.67.0.2 [3956 B] Get:96 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-program-options1.67.0 mipsel 1.67.0-13 [336 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-program-options1.67-dev mipsel 1.67.0-13 [393 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-program-options-dev mipsel 1.67.0.2 [3980 B] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.45.3-4 [70.1 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel libgmp10 mipsel 2:6.1.2+dfsg-4 [222 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libnettle6 mipsel 3.5.1+really3.4.1-1 [238 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libhogweed4 mipsel 3.5.1+really3.4.1-1 [133 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libunistring2 mipsel 0.9.10-2 [360 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel libidn2-0 mipsel 2.2.0-2 [81.4 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mipsel libffi6 mipsel 3.2.1-9 [18.9 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mipsel libp11-kit0 mipsel 0.23.16.1-2 [266 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mipsel libtasn1-6 mipsel 4.14-2 [52.1 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls30 mipsel 3.6.9-4 [1023 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6-6 [14.4 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.17-6 [63.7 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.17-6 [119 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1c-1 [1175 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.17-6 [340 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.17-6 [141 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mipsel libdb5.3 mipsel 5.3.28+dfsg1-0.6 [598 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mipsel libsasl2-modules-db mipsel 2.1.27+dfsg-1 [68.1 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mipsel libsasl2-2 mipsel 2.1.27+dfsg-1 [101 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mipsel libldap-2.4-2 mipsel 2.4.48+dfsg-1 [205 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mipsel libnghttp2-14 mipsel 1.39.2-1 [79.9 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mipsel libpsl5 mipsel 0.20.2-2 [53.3 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mipsel librtmp1 mipsel 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mipsel libgpg-error0 mipsel 1.36-7 [69.0 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mipsel libgcrypt20 mipsel 1.8.5-2 [537 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mipsel libssh2-1 mipsel 1.8.0-2.1 [134 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main mipsel libcurl3-gnutls mipsel 7.65.3-1 [316 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main mipsel libdeflate0 mipsel 1.3-1 [79.1 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mipsel libgslcblas0 mipsel 2.5+dfsg-6+b1 [97.5 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main mipsel libgsl23 mipsel 2.5+dfsg-6+b1 [848 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mipsel libgsl-dev mipsel 2.5+dfsg-6+b1 [1204 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main mipsel liblzma5 mipsel 5.2.4-1+b1 [153 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main mipsel libhts2 mipsel 1.9-11 [284 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main mipsel liblzma-dev mipsel 5.2.4-1+b1 [215 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-1+b1 [209 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main mipsel libhts-dev mipsel 1.9-11 [4296 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main mipsel r-mathlib mipsel 3.6.1-4 [1987 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 105 MB in 3s (32.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 13083 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package gcc-9-base:mipsel. Preparing to unpack .../007-gcc-9-base_9.2.1-8_mipsel.deb ... Unpacking gcc-9-base:mipsel (9.2.1-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../010-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../014-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../020-binutils-mipsel-linux-gnu_2.32.51.20190821-2cross3_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.32.51.20190821-2cross3) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu-base:amd64. Preparing to unpack .../021-gcc-9-mipsel-linux-gnu-base_9.2.1-4cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu-base:amd64 (9.2.1-4cross1) ... Selecting previously unselected package cpp-9-mipsel-linux-gnu. Preparing to unpack .../022-cpp-9-mipsel-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking cpp-9-mipsel-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package cpp-mipsel-linux-gnu. Preparing to unpack .../023-cpp-mipsel-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking cpp-mipsel-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package cross-config. Preparing to unpack .../024-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../025-gcc-9-cross-base_9.2.1-8cross1_all.deb ... Unpacking gcc-9-cross-base (9.2.1-8cross1) ... Selecting previously unselected package libc6-mipsel-cross. Preparing to unpack .../026-libc6-mipsel-cross_2.28-10cross7_all.deb ... Unpacking libc6-mipsel-cross (2.28-10cross7) ... Selecting previously unselected package libgcc1-mipsel-cross. Preparing to unpack .../027-libgcc1-mipsel-cross_1%3a9.2.1-4cross1_all.deb ... Unpacking libgcc1-mipsel-cross (1:9.2.1-4cross1) ... Selecting previously unselected package libgomp1-mipsel-cross. Preparing to unpack .../028-libgomp1-mipsel-cross_9.2.1-4cross1_all.deb ... Unpacking libgomp1-mipsel-cross (9.2.1-4cross1) ... Selecting previously unselected package libatomic1-mipsel-cross. Preparing to unpack .../029-libatomic1-mipsel-cross_9.2.1-4cross1_all.deb ... Unpacking libatomic1-mipsel-cross (9.2.1-4cross1) ... Selecting previously unselected package libgcc-9-dev-mipsel-cross. Preparing to unpack .../030-libgcc-9-dev-mipsel-cross_9.2.1-4cross1_all.deb ... Unpacking libgcc-9-dev-mipsel-cross (9.2.1-4cross1) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu. Preparing to unpack .../031-gcc-9-mipsel-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../032-gcc-mipsel-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../033-libstdc++6-mipsel-cross_9.2.1-4cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (9.2.1-4cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../034-linux-libc-dev-mipsel-cross_5.2.9-2cross7_all.deb ... Unpacking linux-libc-dev-mipsel-cross (5.2.9-2cross7) ... Selecting previously unselected package libc6-dev-mipsel-cross. Preparing to unpack .../035-libc6-dev-mipsel-cross_2.28-10cross7_all.deb ... Unpacking libc6-dev-mipsel-cross (2.28-10cross7) ... Selecting previously unselected package libstdc++-9-dev-mipsel-cross. Preparing to unpack .../036-libstdc++-9-dev-mipsel-cross_9.2.1-4cross1_all.deb ... Unpacking libstdc++-9-dev-mipsel-cross (9.2.1-4cross1) ... Selecting previously unselected package g++-9-mipsel-linux-gnu. Preparing to unpack .../037-g++-9-mipsel-linux-gnu_9.2.1-4cross1_amd64.deb ... Unpacking g++-9-mipsel-linux-gnu (9.2.1-4cross1) ... Selecting previously unselected package g++-mipsel-linux-gnu. Preparing to unpack .../038-g++-mipsel-linux-gnu_4%3a9.2.1-3_amd64.deb ... Unpacking g++-mipsel-linux-gnu (4:9.2.1-3) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../039-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../040-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../041-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../042-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../043-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../044-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../045-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../046-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../047-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../048-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../049-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../050-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../051-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../052-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../053-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../054-crossbuild-essential-mipsel_12.7_all.deb ... Unpacking crossbuild-essential-mipsel (12.7) ... Selecting previously unselected package libtool. Preparing to unpack .../055-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../056-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../057-libarchive-zip-perl_1.65-1_all.deb ... Unpacking libarchive-zip-perl (1.65-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../058-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../059-libfile-stripnondeterminism-perl_1.6.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../060-dh-strip-nondeterminism_1.6.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../061-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../062-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../063-libglib2.0-0_2.60.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../064-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../065-libncurses6_6.1+20190803-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190803-1) ... Selecting previously unselected package gettext. Preparing to unpack .../066-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. 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Setting up linux-libc-dev:mipsel (5.2.9-2) ... Setting up libc6-mipsel-cross (2.28-10cross7) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-5) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.2.1-4cross1) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up binutils-mipsel-linux-gnu (2.32.51.20190821-2cross3) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up icu-devtools (63.2-2) ... Setting up pkg-config (0.29-6) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up cpp-9-mipsel-linux-gnu (9.2.1-4cross1) ... Setting up linux-libc-dev-mipsel-cross (5.2.9-2cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-9-base:mipsel (9.2.1-8) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up libc6-dev-mipsel-cross (2.28-10cross7) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-2) ... Setting up libatomic1-mipsel-cross (9.2.1-4cross1) ... Setting up libgcc1-mipsel-cross (1:9.2.1-4cross1) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgomp1-mipsel-cross (9.2.1-4cross1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libstdc++6-mipsel-cross (9.2.1-4cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-9-dev-mipsel-cross (9.2.1-4cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-mipsel-cross (9.2.1-4cross1) ... Setting up gcc-9-mipsel-linux-gnu (9.2.1-4cross1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-mipsel-linux-gnu (9.2.1-4cross1) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-3) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-mipsel-linux-gnu (4:9.2.1-3) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.7) ... Setting up dh-autoreconf (19) ... Setting up libc6:mipsel (2.29-1) ... Setting up libtasn1-6:mipsel (4.14-2) ... Setting up libc6-dev:mipsel (2.29-1) ... Setting up libbz2-1.0:mipsel (1.0.8-2) ... Setting up libdb5.3:mipsel (5.3.28+dfsg1-0.6) ... Setting up libkeyutils1:mipsel (1.6-6) ... Setting up liblzma5:mipsel (5.2.4-1+b1) ... Setting up libgpg-error0:mipsel (1.36-7) ... Setting up libgslcblas0:mipsel (2.5+dfsg-6+b1) ... Setting up libgcc1:mipsel (1:9.2.1-8) ... Setting up libssl1.1:mipsel (1.1.1c-1) ... Setting up libnghttp2-14:mipsel (1.39.2-1) ... Setting up libunistring2:mipsel (0.9.10-2) ... Setting up libdeflate0:mipsel (1.3-1) ... Setting up libgcrypt20:mipsel (1.8.5-2) ... Setting up debhelper (12.5.4) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:mipsel (3.2.1-9) ... Setting up libidn2-0:mipsel (2.2.0-2) ... Setting up libcom-err2:mipsel (1.45.3-4) ... Setting up libgomp1:mipsel (9.2.1-8) ... Setting up libkrb5support0:mipsel (1.17-6) ... Setting up libsasl2-modules-db:mipsel (2.1.27+dfsg-1) ... Setting up libgsl23:mipsel (2.5+dfsg-6+b1) ... Setting up libgmp10:mipsel (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:mipsel (0.23.16.1-2) ... Setting up libatomic1:mipsel (9.2.1-8) ... Setting up libk5crypto3:mipsel (1.17-6) ... Setting up libnettle6:mipsel (3.5.1+really3.4.1-1) ... Setting up libsasl2-2:mipsel (2.1.27+dfsg-1) ... Setting up libgfortran5:mipsel (9.2.1-8) ... Setting up liblzma-dev:mipsel (5.2.4-1+b1) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-1+b1) ... Setting up r-mathlib:mipsel (3.6.1-4) ... Setting up libssh2-1:mipsel (1.8.0-2.1) ... Setting up libkrb5-3:mipsel (1.17-6) ... Setting up libstdc++6:mipsel (9.2.1-8) ... Setting up libboost-program-options1.67.0:mipsel (1.67.0-13) ... Setting up libpsl5:mipsel (0.20.2-2) ... Setting up libgsl-dev:mipsel (2.5+dfsg-6+b1) ... Setting up libhogweed4:mipsel (3.5.1+really3.4.1-1) ... Setting up libicu63:mipsel (63.2-2) ... Setting up libgcc-9-dev:mipsel (9.2.1-8) ... Setting up libblas3:mipsel (3.8.0-2) ... update-alternatives: using /usr/lib/mipsel-linux-gnu/blas/libblas.so.3 to provide /usr/lib/mipsel-linux-gnu/libblas.so.3 (libblas.so.3-mipsel-linux-gnu) in auto mode Setting up libgnutls30:mipsel (3.6.9-4) ... Setting up librtmp1:mipsel (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:mipsel (1.17-6) ... Setting up libboost-iostreams1.67.0:mipsel (1.67.0-13) ... Setting up libicu-dev:mipsel (63.2-2) ... Setting up libblas-dev:mipsel (3.8.0-2) ... update-alternatives: using /usr/lib/mipsel-linux-gnu/blas/libblas.so to provide /usr/lib/mipsel-linux-gnu/libblas.so (libblas.so-mipsel-linux-gnu) in auto mode Setting up libboost-regex1.67.0:mipsel (1.67.0-13) ... Setting up libstdc++-9-dev:mipsel (9.2.1-8) ... Setting up libldap-2.4-2:mipsel (2.4.48+dfsg-1) ... Setting up libcurl3-gnutls:mipsel (7.65.3-1) ... Setting up libboost1.67-dev:mipsel (1.67.0-13) ... Setting up libhts2:mipsel (1.9-11) ... Setting up libboost-program-options1.67-dev:mipsel (1.67.0-13) ... Setting up libboost-regex1.67-dev:mipsel (1.67.0-13) ... Setting up libhts-dev:mipsel (1.9-11) ... Setting up libboost-program-options-dev:mipsel (1.67.0.2) ... Setting up libboost-dev:mipsel (1.67.0.2) ... Setting up libboost-iostreams1.67-dev:mipsel (1.67.0-13) ... Setting up libboost-iostreams-dev:mipsel (1.67.0.2) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.29-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190909-1 dpkg-dev_1.19.7 g++-8_8.3.0-22 g++-9_9.2.1-8 gcc-8_8.3.0-22 gcc-9_9.2.1-8 libc6-dev_2.29-1 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-mipsel-cross_9.2.1-4cross1 libstdc++6_9.2.1-8 libstdc++6-mipsel-cross_9.2.1-4cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1 binutils-common_2.32.51.20190909-1 binutils-mipsel-linux-gnu_2.32.51.20190821-2cross3 binutils-x86-64-linux-gnu_2.32.51.20190909-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.7 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-22 cpp-9_9.2.1-8 cpp-9-mipsel-linux-gnu_9.2.1-4cross1 cpp-mipsel-linux-gnu_4:9.2.1-3 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.7 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.5.4 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-22 g++-9_9.2.1-8 g++-9-mipsel-linux-gnu_9.2.1-4cross1 g++-mipsel-linux-gnu_4:9.2.1-3 gcc_4:9.2.1-3.1 gcc-8_8.3.0-22 gcc-8-base_8.3.0-22 gcc-9_9.2.1-8 gcc-9-base_9.2.1-8 gcc-9-cross-base_9.2.1-8cross1 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libc-dev-bin_2.29-1 libc6_2.29-1 libc6-dev_2.29-1 libc6-dev-mipsel-cross_2.28-10cross7 libc6-mipsel-cross_2.28-10cross7 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-8 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.65.3-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.3-1 libdpkg-perl_1.19.7 libeigen3-dev_3.3.7-1 libelf1_0.176-1.1 libext2fs2_1.45.3-4 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-22 libgcc-9-dev_9.2.1-8 libgcc-9-dev-mipsel-cross_9.2.1-4cross1 libgcc1_1:9.2.1-8 libgcc1-mipsel-cross_1:9.2.1-4cross1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-8 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-8 libgomp1-mipsel-cross_9.2.1-4cross1 libgpg-error0_1.36-7 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librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-4 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-mipsel-cross_9.2.1-4cross1 libstdc++6_9.2.1-8 libstdc++6-mipsel-cross_9.2.1-4cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-8 libubsan1_9.2.1-8 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.9-2 linux-libc-dev-mipsel-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 r-mathlib_3.6.1-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6+b1 tzdata_2019c-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fastqtl Binary: fastqtl, fastqtl-doc Architecture: any all Version: 2.184+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: http://fastqtl.sourceforge.net/ Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/fastqtl Vcs-Git: https://salsa.debian.org/med-team/fastqtl.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev Package-List: fastqtl deb science optional arch=any fastqtl-doc deb doc optional arch=all Checksums-Sha1: a334f112c2fc8e39613d6dfbfdf390c54a8e6ccd 17122060 fastqtl_2.184+dfsg.orig.tar.xz c569071e45bcbef9eb02268f23241900dfa74b09 19512 fastqtl_2.184+dfsg-7.debian.tar.xz Checksums-Sha256: 5f40bf8d9dbce2cd738080ebe28bf2b3892b75c9a8446e5e1d8c293d4b382b65 17122060 fastqtl_2.184+dfsg.orig.tar.xz 30676085fbed1dc419e1c46dfe3bb3247d5b6390d9e54f5ac6881886d0e2d0d3 19512 fastqtl_2.184+dfsg-7.debian.tar.xz Files: 8db4d2905b2f2b659e40f70a6ccdfa8d 17122060 fastqtl_2.184+dfsg.orig.tar.xz 9e966c9cff79bb11c84863f4c6766760 19512 fastqtl_2.184+dfsg-7.debian.tar.xz -----BEGIN PGP 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Wed Sep 11 06:20:12 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastqtl_2.184+dfsg-7.dsc dpkg-source: info: extracting fastqtl in /<> dpkg-source: info: unpacking fastqtl_2.184+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqtl_2.184+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch dpkg-source: info: applying 03_Reproducible_builds.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b857b250-ce9a-45b5-9336-0c0c79a47da7 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p /<>/obj/ mkdir -p /<>/bin/ dh_auto_build -- CXXFLAGS='-g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc "CXXFLAGS=-g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" make[2]: Entering directory '/<>' mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc In file included from src/analysisMapping.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc In file included from src/analysisNominal.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc In file included from src/analysisPermutation.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc In file included from src/analysisPermutationInteraction.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc In file included from src/management.cpp:20: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc src/utils/tabix.cpp: In constructor ‘Tabix::Tabix(std::string&)’: src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here 243 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here 243 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ mipsel-linux-gnu-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc mipsel-linux-gnu-g++ -O3 -Wl,-z,relro -Wl,-z,now obj/analysisMapping.o obj/analysisNominal.o obj/analysisPermutation.o obj/analysisPermutationInteraction.o obj/analysisPermutationPerGroup.o obj/analysisPermutationSequence.o obj/commands.o obj/df.o obj/fastQTL.o obj/management.o obj/mle.o obj/readCovariates.o obj/readGenotypes.o obj/readGroups.o obj/readInclusionsExclusions.o obj/readInteractions.o obj/readPhenotypes.o obj/readThresholds.o obj/residualizer.o obj/tabix.o obj/utils.o -lRmath -lhts -lm -lz -lboost_iostreams -lboost_program_options -lgsl -lblas -o bin/fastQTL /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/mipsel-linux-gnu/libgfortran.so.5: undefined reference to `exp@GLIBC_2.29' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/mipsel-linux-gnu/libgfortran.so.5: undefined reference to `log@GLIBC_2.29' collect2: error: ld returned 1 exit status make[2]: *** [Makefile:94: bin/fastQTL] Error 1 make[2]: Leaving directory '/<>' dh_auto_build: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc "CXXFLAGS=-g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" returned exit code 2 make[1]: *** [debian/rules:14: override_dh_auto_build] Error 255 make[1]: Leaving directory '/<>' make: *** [debian/rules:9: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-09-13T16:40:43Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 59284 Build-Time: 153 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 27 Job: fastqtl_2.184+dfsg-7 Machine Architecture: amd64 Package: fastqtl Package-Time: 193 Source-Version: 2.184+dfsg-7 Space: 59284 Status: attempted Version: 2.184+dfsg-7 -------------------------------------------------------------------------------- Finished at 2019-09-13T16:40:43Z Build needed 00:03:13, 59284k disk space