sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | fermi-lite 0.1-7 (armhf) Tue, 31 Dec 2019 12:51:34 +0000 | +==============================================================================+ Package: fermi-lite Version: 0.1-7 Source Version: 0.1-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-5d53bf98-b56c-48bf-b246-ed90ea9ce788' with '<>' I: NOTICE: Log filtering will replace 'build/fermi-lite-LV1R0e/resolver-zPEi83' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-31-0816.20.pdiff [8085 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-31-0816.20.pdiff [8085 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-31-0816.20.pdiff [32.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-31-0816.20.pdiff [32.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7972 kB] Fetched 8212 kB in 2s (4207 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fermi-lite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fermi-lite.git Please use: git clone https://salsa.debian.org/med-team/fermi-lite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 294 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main fermi-lite 0.1-7 (dsc) [2103 B] Get:2 http://debian.oregonstate.edu/debian unstable/main fermi-lite 0.1-7 (tar) [248 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main fermi-lite 0.1-7 (diff) [44.1 kB] Fetched 294 kB in 0s (6371 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fermi-lite-LV1R0e/fermi-lite-0.1' with '<>' I: NOTICE: Log filtering will replace 'build/fermi-lite-LV1R0e' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11), d-shlibs, zlib1g-dev, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper (>= 11), d-shlibs, zlib1g-dev, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [418 B] Get:5 copy:/<>/apt_archive ./ Packages [506 B] Fetched 1881 B in 0s (89.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf libstdc++-9-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 77.6 MB of archives. After this operation, 307 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-3 [32.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.2.1-21 [194 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.33.1-6 [2721 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-9 [104 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-7 [2635 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-21 [1675 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-21 [10.7 MB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.2.1-21cross1 [194 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [6813 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.29-1cross7 [1122 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.2.1-21cross1 [37.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.2.1-21cross1 [73.2 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.2.1-21cross1 [6624 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.2.1-21cross1 [362 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.2.1-21cross1 [392 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.2.1-21cross1 [112 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armhf-cross all 9.2.1-21cross1 [664 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7159 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1476 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.2.9-2cross7 [1312 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.29-1cross7 [2122 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armhf-cross all 9.2.1-21cross1 [1720 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7390 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1184 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.88 [17.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.3 [174 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-1 [14.6 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-1 [1320 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.3 [1019 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.11 [180 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.2.1-21 [37.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.10-9 [100 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.29-7 [2323 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.2.1-21 [369 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.2.1-21 [6864 B] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.4.6-1 [1019 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.10-9 [120 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.29-7 [2127 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.2.1-21 [75.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.2.1-21 [431 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.2.1-21 [113 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.2.1-21 [664 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.2.1-21 [1720 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1+b1 [85.1 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1+b1 [204 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.6 MB in 1s (66.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-3) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.3) ... Setting up libmagic1:amd64 (1:5.37-6) ... Setting up linux-libc-dev:armhf (5.4.6-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-9-arm-linux-gnueabihf-base:amd64 (9.2.1-21cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up linux-libc-dev-armhf-cross (5.2.9-2cross7) ... Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.88) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-9) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-7) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up binutils-arm-linux-gnueabihf (2.33.1-6) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armhf (9.2.1-21) ... Setting up libgomp1-armhf-cross (9.2.1-21cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-21) ... Setting up libtool (2.4.6-11) ... Setting up cpp-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libc6-dev-armhf-cross (2.29-1cross7) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armhf-cross (9.2.1-21cross1) ... Setting up help2man (1.47.11) ... Setting up libgcc1-armhf-cross (1:9.2.1-21cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-21) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.2.1-21cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-armhf-cross (9.2.1-21cross1) ... Setting up libubsan1-armhf-cross (9.2.1-21cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libgcc1:armhf (1:9.2.1-21) ... Setting up libcrypt1:armhf (1:4.4.10-9) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.29-7) ... Setting up libcrypt-dev:armhf (1:4.4.10-9) ... Setting up libc6-dev:armhf (2.29-7) ... Setting up libstdc++6:armhf (9.2.1-21) ... Setting up debhelper (12.7.3) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:armhf (9.2.1-21) ... Setting up libasan5:armhf (9.2.1-21) ... Setting up libatomic1:armhf (9.2.1-21) ... Setting up libubsan1:armhf (9.2.1-21) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1+b1) ... Setting up libgcc-9-dev:armhf (9.2.1-21) ... Setting up libstdc++-9-dev:armhf (9.2.1-21) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.29-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-6 dpkg-dev_1.19.7 g++-9_9.2.1-21 gcc-8_8.3.0-26 gcc-9_9.2.1-21 libc6-dev_2.29-7 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armhf-cross_9.2.1-21cross1 linux-libc-dev_5.4.6-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6 binutils-arm-linux-gnueabihf_2.33.1-6 binutils-common_2.33.1-6 binutils-x86-64-linux-gnu_2.33.1-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-26 cpp-9_9.2.1-21 cpp-9-arm-linux-gnueabihf_9.2.1-21cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-21 g++-9-arm-linux-gnueabihf_9.2.1-21cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-26 gcc-8-base_8.3.0-26 gcc-9_9.2.1-21 gcc-9-arm-linux-gnueabihf_9.2.1-21cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-21cross1 gcc-9-base_9.2.1-21 gcc-9-cross-base_9.2.1-21cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3+b1 help2man_1.47.11 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-21 libasan5-armhf-cross_9.2.1-21cross1 libatomic1_9.2.1-21 libatomic1-armhf-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7 libc-dev-bin_2.29-7 libc6_2.29-7 libc6-armhf-cross_2.29-1cross7 libc6-dev_2.29-7 libc6-dev-armhf-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1+b1 libcc1-0_9.2.1-21 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-9 libcrypt1_1:4.4.10-9 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-26 libgcc-9-dev_9.2.1-21 libgcc-9-dev-armhf-cross_9.2.1-21cross1 libgcc1_1:9.2.1-21 libgcc1-armhf-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21 libgomp1-armhf-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_9.2.1-21 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-21 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-26 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libquadmath0_9.2.1-21 libseccomp2_2.4.2-2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armhf-cross_9.2.1-21cross1 libsub-override-perl_0.09-2 libsystemd0_244-3 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-21 libubsan1_9.2.1-21 libubsan1-armhf-cross_9.2.1-21cross1 libuchardet0_0.0.6-3 libudev1_244-3 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libyaml-perl_1.29-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.6-1 linux-libc-dev-armhf-cross_5.2.9-2cross7 login_1:4.8-1 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-19 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fermi-lite Binary: fml-asm, libfml0, libfml-dev Architecture: any Version: 0.1-7 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/lh3/fermi-lite Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/fermi-lite Vcs-Git: https://salsa.debian.org/med-team/fermi-lite.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper (>= 11), d-shlibs, zlib1g-dev, help2man Package-List: fml-asm deb science optional arch=any libfml-dev deb libdevel optional arch=any libfml0 deb libs optional arch=any Checksums-Sha1: c4bc7936c2e387c8c9d5832091a5560faa66d273 247611 fermi-lite_0.1.orig.tar.gz d49e91ab40cc00f7bbd99f2698920c841ff5aa87 44128 fermi-lite_0.1-7.debian.tar.xz Checksums-Sha256: 661053bc7213b575912fc7be9cdfebc1c92a10319594a8e8f18542c9e2adda6e 247611 fermi-lite_0.1.orig.tar.gz a8ef0ddf7a046a5802e393df8580e669845f3a05165d95831d606a4034858d69 44128 fermi-lite_0.1-7.debian.tar.xz Files: a4c78ce48472795877f14eec8202447c 247611 fermi-lite_0.1.orig.tar.gz adc201ee6a8fc5873684696e8d040b58 44128 fermi-lite_0.1-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl30+/MACgkQPCZ2P2xn 5uLSFw/9EGHeJXu47ZNndLEFDDzNuDG8MU4tqsv24pSOa2/iXXE7j1v8/pdBm4S8 JgTInhSfsFkxSKtB11YuQg+30/Va9+HRy1dShujit63oSmQxZkf2N9wVC+y/oECg rafUMVLy4fPjpE+a9GpX4QmVVfuVwaA+H5SSM0GVpL3+32cMhDdflGAjjKAi88Bn VdEDUdJrPWGJp/7A5ykmFuG1yVuTXuMPj2znNkE4SDChQrqWcXIwoGiVqqPPQDmz Feyq+R/AxQPdLshXQ5c6X8qaM8kCOwfZzogN+3NRREwIXsPy7uBRSQZgVTksm2wW SBQ8ZZ07TarypJZbF38JHZeieZVJeQcp5qgdJlWFh534Iw1PMLKcVmVxWwQjyG1w rEmCEGRIvqKetDWtNf3flD7HjJbOJyNxcB9BxpLpuFj7J7UJiBIQ5VZMY68aO1W/ /jpaPb1IwcOzRZ4OJ7TBSbliFxmWfn3FGahymcwJoF0AbK0miQXNj0rjhW28iNZA lG0bfh5DjQUjqw4fSFB50tWvVVNEs31JN5LAnJ2LSUJtH4VH5qA7L3ffxvohqfjm nViyOJxb4quRGHNk0WVIDGPsOVO+f26wV9wYW15vyuHVdwm7tRaFSdAoM69OoOpA vc1BJEKygyq7DX75CFLl7M5THLWhE1dveJ1SBam5t6YHCbg5lsk= =WCuI -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 14 15:12:51 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fermi-lite_0.1-7.dsc dpkg-source: info: extracting fermi-lite in /<> dpkg-source: info: unpacking fermi-lite_0.1.orig.tar.gz dpkg-source: info: unpacking fermi-lite_0.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying rename_bseq1_t.patch dpkg-source: info: applying bcf_seqlib.patch dpkg-source: info: applying simde Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-5d53bf98-b56c-48bf-b246-ed90ea9ce788 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fermi-lite dpkg-buildpackage: info: source version 0.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -fr gmon.out *.o ext/*.o a.out fml-asm *~ *.a *.dSYM session* make[2]: Leaving directory '/<>' rm -f fml-asm.1 make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>' arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 kthread.c -o kthread.o arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 misc.c -o misc.o misc.c: In function ‘fml_utg_print’: misc.c:211:12: warning: variable ‘l’ set but not used [-Wunused-but-set-variable] 211 | int i, j, l; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 bseq.c -o bseq.o arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 htab.c -o htab.o arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 bfc.c -o bfc.o bfc.c: In function ‘bfc_kmer_insert’: bfc.c:54:17: warning: variable ‘hash’ set but not used [-Wunused-but-set-variable] 54 | uint64_t y[2], hash; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 rle.c -o rle.o arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 rope.c -o rope.o arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 mrope.c -o mrope.o arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 rld0.c -o rld0.o rld0.c: In function ‘rld_restore’: rld0.c:298:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 298 | fread(e->z[i], 8, RLD_LSIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:299:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 299 | fread(e->z[i], 8, k, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ rld0.c:301:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 301 | fread(e->frame, 8 * e->asize1, e->n_frames, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rld0.c: In function ‘rld_restore_header’: rld0.c:256:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 256 | fread(magic, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~ rld0.c:258:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 258 | fread(&x, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~ rld0.c:260:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 260 | fread(a, 8, 3, fp); | ^~~~~~~~~~~~~~~~~~ rld0.c:262:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 262 | fread(e->mcnt + 1, 8, e->asize, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 unitig.c -o unitig.o unitig.c: In function ‘unitig1’: unitig.c:325:16: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 325 | int seed_len, ret, is_loop, contained; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 mag.c -o mag.o mag.c: In function ‘mag_g_rm_vext’: mag.c:418:38: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 418 | fprintf(stderr, "[M::%s] removed %ld tips (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d mag.c: In function ‘mag_g_rm_vint’: mag.c:436:38: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 436 | fprintf(stderr, "[M::%s] removed %ld internal vertices (min_len=%d, min_nsr=%d)\n", __func__, a.n, min_len, min_nsr); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 bubble.c -o bubble.o arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 ksw.c -o ksw.o ar -csru libfml.a kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 example.c -o example.o arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC libfml.a example.o -o fml-asm -L. -lfml -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-gcc -shared -o libfml.so.0 kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -fPIC -Wl,-soname,libfml.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' ln -s libfml.so.* libfml.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "fml.h" /usr/include/ \ --movedev "bfc.h" /usr/include/fml \ --movedev "htab.h" /usr/include/fml \ --movedev "kmer.h" /usr/include/fml \ --movedev "internal.h" /usr/include/fml \ --movedev "khash.h" /usr/include/fml \ --movedev "kvec.h" /usr/include/fml \ --movedev "ksort.h" /usr/include/fml \ libfml.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libfml-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libfml0/usr/lib/arm-linux-gnueabihf mv ./libfml.a debian/libfml-dev/usr/lib/arm-linux-gnueabihf mv ./libfml.la debian/libfml-dev/usr/lib/arm-linux-gnueabihf || true mv ./libfml.so debian/libfml-dev/usr/lib/arm-linux-gnueabihf mv /<>/libfml.so.0 debian/libfml0/usr/lib/arm-linux-gnueabihf PKGDEV=libfml-dev PKGSHL=libfml0 install -d -m 755 debian/libfml-dev//usr/include/ mv fml.h debian/libfml-dev//usr/include/ install -d -m 755 debian/libfml-dev//usr/include/fml mv bfc.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv htab.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kmer.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv internal.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv khash.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv kvec.h debian/libfml-dev//usr/include/fml install -d -m 755 debian/libfml-dev//usr/include/fml mv ksort.h debian/libfml-dev//usr/include/fml mv: cannot stat './libfml.la': No such file or directory make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' help2man --version-string='0.1' \ -n 'assemble Illumina short reads in small regions' \ -N --no-discard-stderr -h '' ./fml-asm > fml-asm.1 dh_installman make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'fml-asm' in '../fml-asm_0.1-7_armhf.deb'. dpkg-deb: building package 'fml-asm-dbgsym' in '../fml-asm-dbgsym_0.1-7_armhf.deb'. dpkg-deb: building package 'libfml0' in '../libfml0_0.1-7_armhf.deb'. dpkg-deb: building package 'libfml0-dbgsym' in '../libfml0-dbgsym_0.1-7_armhf.deb'. dpkg-deb: building package 'libfml-dev' in '../libfml-dev_0.1-7_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../fermi-lite_0.1-7_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-12-31T12:52:23Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fermi-lite_0.1-7_armhf.changes: ------------------------------- Format: 1.8 Date: Sat, 14 Dec 2019 15:33:59 +0100 Source: fermi-lite Binary: fml-asm fml-asm-dbgsym libfml-dev libfml0 libfml0-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 0.1-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: fml-asm - tool for assembling Illumina short reads in small regions libfml-dev - development headers for libfml libfml0 - library for assembling Illumina short reads in small regions Changes: fermi-lite (0.1-7) unstable; urgency=medium . * Team upload. * Add -latomic for those archs that need it Checksums-Sha1: 3fe6fccf1a4b44a08213e98be0176f3c8278da5f 5937 fermi-lite_0.1-7_armhf.buildinfo 647e65e774ec2700b97db31d59e30b6cab898625 179944 fml-asm-dbgsym_0.1-7_armhf.deb 589ddf6844f1d3e03d54c7a1329c6170ef024e33 66188 fml-asm_0.1-7_armhf.deb 5302416974d90829252d863b6b2d5daefacdcb66 80448 libfml-dev_0.1-7_armhf.deb c809377e41e578e05f0b9391dfcd74dc155f205f 177044 libfml0-dbgsym_0.1-7_armhf.deb 6911646ebd6f139160071703ebf705acb3a9239a 69332 libfml0_0.1-7_armhf.deb Checksums-Sha256: 5441307ea27aa9d5123e8ecb1df6273a678fd8184b34491d506d96571a8b6f1f 5937 fermi-lite_0.1-7_armhf.buildinfo 644c716f1e38b70cb6a203492041f86aac4965e48d96578418ca20d73a88c39f 179944 fml-asm-dbgsym_0.1-7_armhf.deb 953fd18e84c36920a8853c1c6d3fdf0fb27731d8ea02af3f372af7fd0bf068a2 66188 fml-asm_0.1-7_armhf.deb 160ff386a5b06b7d990cdc1966e1628fa229984df89b63907e9c4e4cced03fc4 80448 libfml-dev_0.1-7_armhf.deb d419711c9df8250e3a2712fcb3c1e81842362673d605d2b9ae7c96e2c91b0350 177044 libfml0-dbgsym_0.1-7_armhf.deb 1728438472cdb4a864b81fba160e77515a6cf97554863d1b4fa237264d3371e3 69332 libfml0_0.1-7_armhf.deb Files: df8860eacdd0396956371582fccae738 5937 science optional fermi-lite_0.1-7_armhf.buildinfo cc93bbbbfd2ff0801b12e5329413de71 179944 debug optional fml-asm-dbgsym_0.1-7_armhf.deb 0d5de25eed98b18a648750ef6fabba94 66188 science optional fml-asm_0.1-7_armhf.deb 71531d0bdc04d51b3faef263d805f422 80448 libdevel optional libfml-dev_0.1-7_armhf.deb 058d19e953ba6785d104045afa661ab3 177044 debug optional libfml0-dbgsym_0.1-7_armhf.deb 004429c5604931aca4d797de5e8f8ac1 69332 libs optional libfml0_0.1-7_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fermi-lite Binary: fml-asm libfml0 libfml-dev Architecture: armhf Version: 0.1-7 Checksums-Md5: cc93bbbbfd2ff0801b12e5329413de71 179944 fml-asm-dbgsym_0.1-7_armhf.deb 0d5de25eed98b18a648750ef6fabba94 66188 fml-asm_0.1-7_armhf.deb 71531d0bdc04d51b3faef263d805f422 80448 libfml-dev_0.1-7_armhf.deb 058d19e953ba6785d104045afa661ab3 177044 libfml0-dbgsym_0.1-7_armhf.deb 004429c5604931aca4d797de5e8f8ac1 69332 libfml0_0.1-7_armhf.deb Checksums-Sha1: 647e65e774ec2700b97db31d59e30b6cab898625 179944 fml-asm-dbgsym_0.1-7_armhf.deb 589ddf6844f1d3e03d54c7a1329c6170ef024e33 66188 fml-asm_0.1-7_armhf.deb 5302416974d90829252d863b6b2d5daefacdcb66 80448 libfml-dev_0.1-7_armhf.deb c809377e41e578e05f0b9391dfcd74dc155f205f 177044 libfml0-dbgsym_0.1-7_armhf.deb 6911646ebd6f139160071703ebf705acb3a9239a 69332 libfml0_0.1-7_armhf.deb Checksums-Sha256: 644c716f1e38b70cb6a203492041f86aac4965e48d96578418ca20d73a88c39f 179944 fml-asm-dbgsym_0.1-7_armhf.deb 953fd18e84c36920a8853c1c6d3fdf0fb27731d8ea02af3f372af7fd0bf068a2 66188 fml-asm_0.1-7_armhf.deb 160ff386a5b06b7d990cdc1966e1628fa229984df89b63907e9c4e4cced03fc4 80448 libfml-dev_0.1-7_armhf.deb d419711c9df8250e3a2712fcb3c1e81842362673d605d2b9ae7c96e2c91b0350 177044 libfml0-dbgsym_0.1-7_armhf.deb 1728438472cdb4a864b81fba160e77515a6cf97554863d1b4fa237264d3371e3 69332 libfml0_0.1-7_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 31 Dec 2019 12:52:23 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.4), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-5), binutils (= 2.33.1-6), binutils-common (= 2.33.1-6), binutils-x86-64-linux-gnu (= 2.33.1-6), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-26), cpp-9 (= 9.2.1-21), d-shlibs (= 0.88), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7.3), debian-archive-keyring (= 2019.1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.37-6), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-21), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-26), gcc-8-base (= 8.3.0-26), gcc-9 (= 9.2.1-21), gcc-9-base (= 9.2.1-21), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), gpgv (= 2.2.17-3), grep (= 3.3-1), groff-base (= 1.22.4-4), gzip (= 1.9-3+b1), help2man (= 1.47.11), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libapt-pkg5.0 (= 1.8.4), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-21), libatomic1 (= 9.2.1-21), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.33.1-6), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-7), libc-dev-bin (= 2.29-7), libc6 (= 2.29-7), libc6-dev (= 2.29-7), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 9.2.1-21), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-9), libcrypt1 (= 1:4.4.10-9), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7.3), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.3-1), libgcc-8-dev (= 8.3.0-26), libgcc-9-dev (= 9.2.1-21), libgcc1 (= 1:9.2.1-21), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.4-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.11.1-2), libgomp1 (= 9.2.1-21), libgpg-error0 (= 1.36-7), libhogweed5 (= 3.5.1+really3.5.1-2), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-2), libisl22 (= 0.22-2), libitm1 (= 9.2.1-21), liblocale-gettext-perl (= 1.07-4), liblsan0 (= 9.2.1-21), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-6), libmagic1 (= 1:5.37-6), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-26), libncursesw6 (= 6.1+20191019-1), libnettle7 (= 3.5.1+really3.5.1-2), libp11-kit0 (= 0.23.18.1-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.1-3), libquadmath0 (= 9.2.1-21), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1), libsemanage-common (= 3.0-1), libsemanage1 (= 3.0-1), libsepol1 (= 3.0-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-21), libstdc++6 (= 9.2.1-21), libsub-override-perl (= 0.09-2), libsystemd0 (= 244-3), libtasn1-6 (= 4.15.0-2), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-21), libubsan1 (= 9.2.1-21), libuchardet0 (= 0.0.6-3), libudev1 (= 244-3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-8), libzstd1 (= 1.4.4+dfsg-1), linux-libc-dev (= 5.4.6-1), login (= 1:4.8-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.3-19), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), passwd (= 1:4.8-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1576334039" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fml-asm-dbgsym_0.1-7_armhf.deb ------------------------------ new Debian package, version 2.0. size 179944 bytes: control archive=544 bytes. 369 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: fml-asm-dbgsym Source: fermi-lite Version: 0.1-7 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 198 Depends: fml-asm (= 0.1-7) Section: debug Priority: optional Description: debug symbols for fml-asm Build-Ids: 3b600f148d8732c6a457dcece7af3d77d3b46efa drwxr-xr-x root/root 0 2019-12-14 14:33 ./ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/debug/.build-id/3b/ -rw-r--r-- root/root 191772 2019-12-14 14:33 ./usr/lib/debug/.build-id/3b/600f148d8732c6a457dcece7af3d77d3b46efa.debug drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-12-14 14:33 ./usr/share/doc/fml-asm-dbgsym -> fml-asm fml-asm_0.1-7_armhf.deb ----------------------- new Debian package, version 2.0. size 66188 bytes: control archive=952 bytes. 875 bytes, 18 lines control 326 bytes, 5 lines md5sums Package: fml-asm Source: fermi-lite Version: 0.1-7 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 113 Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/lh3/fermi-lite Description: tool for assembling Illumina short reads in small regions Fml-asm is a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size, based on the fermi-lite library. It is largely a light-weight in-memory version of fermikit without generating any intermediate files. It inherits the performance, the relatively small memory footprint and the features of fermikit. In particular, fermi-lite is able to retain heterozygous events and thus can be used to assemble diploid regions for the purpose of variant calling. drwxr-xr-x root/root 0 2019-12-14 14:33 ./ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/bin/ -rwxr-xr-x root/root 100004 2019-12-14 14:33 ./usr/bin/fml-asm drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/fml-asm/ -rw-r--r-- root/root 70 2019-12-13 16:36 ./usr/share/doc/fml-asm/TODO.Debian -rw-r--r-- root/root 710 2019-12-14 14:33 ./usr/share/doc/fml-asm/changelog.Debian.gz -rw-r--r-- root/root 2710 2019-12-13 16:36 ./usr/share/doc/fml-asm/copyright drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/man/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/man/man1/ -rw-r--r-- root/root 240 2019-12-14 14:33 ./usr/share/man/man1/fml-asm.1.gz libfml-dev_0.1-7_armhf.deb -------------------------- new Debian package, version 2.0. size 80448 bytes: control archive=980 bytes. 583 bytes, 16 lines control 675 bytes, 11 lines md5sums Package: libfml-dev Source: fermi-lite Version: 0.1-7 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 195 Depends: libfml0 (= 0.1-7), zlib1g-dev Section: libdevel Priority: optional Homepage: https://github.com/lh3/fermi-lite Description: development headers for libfml Fermi-lite is a standalone C library tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size. . This package contains the C library headers for using libfml in custom tools, along with a static library. drwxr-xr-x root/root 0 2019-12-14 14:33 ./ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/include/ -rw-r--r-- root/root 4470 2019-12-14 14:33 ./usr/include/fml.h drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/include/fml/ -rw-r--r-- root/root 3078 2019-12-14 14:33 ./usr/include/fml/bfc.h -rw-r--r-- root/root 622 2016-07-20 03:28 ./usr/include/fml/htab.h -rw-r--r-- root/root 447 2019-12-14 14:33 ./usr/include/fml/internal.h -rw-r--r-- root/root 21102 2016-07-20 03:28 ./usr/include/fml/khash.h -rw-r--r-- root/root 2880 2016-07-20 03:28 ./usr/include/fml/kmer.h -rw-r--r-- root/root 10635 2016-07-20 03:28 ./usr/include/fml/ksort.h -rw-r--r-- root/root 3289 2016-07-20 03:28 ./usr/include/fml/kvec.h drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 132236 2019-12-14 14:33 ./usr/lib/arm-linux-gnueabihf/libfml.a lrwxrwxrwx root/root 0 2019-12-14 14:33 ./usr/lib/arm-linux-gnueabihf/libfml.so -> libfml.so.0 drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/libfml-dev/ -rw-r--r-- root/root 710 2019-12-14 14:33 ./usr/share/doc/libfml-dev/changelog.Debian.gz -rw-r--r-- root/root 2710 2019-12-13 16:36 ./usr/share/doc/libfml-dev/copyright libfml0-dbgsym_0.1-7_armhf.deb ------------------------------ new Debian package, version 2.0. size 177044 bytes: control archive=544 bytes. 369 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libfml0-dbgsym Source: fermi-lite Version: 0.1-7 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 195 Depends: libfml0 (= 0.1-7) Section: debug Priority: optional Description: debug symbols for libfml0 Build-Ids: f7c198d028dfe162de39e4fa57ad6d0710787605 drwxr-xr-x root/root 0 2019-12-14 14:33 ./ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/debug/.build-id/f7/ -rw-r--r-- root/root 188472 2019-12-14 14:33 ./usr/lib/debug/.build-id/f7/c198d028dfe162de39e4fa57ad6d0710787605.debug drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-12-14 14:33 ./usr/share/doc/libfml0-dbgsym -> libfml0 libfml0_0.1-7_armhf.deb ----------------------- new Debian package, version 2.0. size 69332 bytes: control archive=1796 bytes. 594 bytes, 16 lines control 216 bytes, 3 lines md5sums 17 bytes, 1 lines shlibs 4754 bytes, 193 lines symbols 67 bytes, 2 lines triggers Package: libfml0 Source: fermi-lite Version: 0.1-7 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 125 Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/lh3/fermi-lite Description: library for assembling Illumina short reads in small regions Fermi-lite is a standalone C library tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size. . This package contains a shared library offering the fermi-lite API to custom C programs. drwxr-xr-x root/root 0 2019-12-14 14:33 ./ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 108092 2019-12-14 14:33 ./usr/lib/arm-linux-gnueabihf/libfml.so.0 drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-12-14 14:33 ./usr/share/doc/libfml0/ -rw-r--r-- root/root 710 2019-12-14 14:33 ./usr/share/doc/libfml0/changelog.Debian.gz -rw-r--r-- root/root 2710 2019-12-13 16:36 ./usr/share/doc/libfml0/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [548 B] Get:5 copy:/<>/apt_archive ./ Packages [638 B] Fetched 2149 B in 0s (104 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 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patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.43.0 [1305 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9294 kB in 0s (28.6 MB/s) Selecting previously unselected package readline-common. (Reading database ... 20217 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.0_all.deb ... Unpacking netbase (6.0) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libipc-system-simple-perl (1.25-5) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.0) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libtype-tiny-perl (1.008001-2) ... Setting up libnet-dns-perl (1.21-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-3+b4) ... Setting up gpgconf (2.2.17-3) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up gpg (2.2.17-3) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003006-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.43.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-7) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3704 Build-Time: 18 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 19 Job: fermi-lite_0.1-7 Lintian: pass Machine Architecture: amd64 Package: fermi-lite Package-Time: 49 Source-Version: 0.1-7 Space: 3704 Status: successful Version: 0.1-7 -------------------------------------------------------------------------------- Finished at 2019-12-31T12:52:23Z Build needed 00:00:49, 3704k disk space