sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | freebayes 1.3.5-2 (arm64) Sun, 22 Aug 2021 04:17:34 +0000 | +==============================================================================+ Package: freebayes Version: 1.3.5-2 Source Version: 1.3.5-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-617fc57a-025f-4c1f-9d90-54cec1836557' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-n0Ajr3/resolver-99NJTr' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-08-22-0201.21-F-2021-08-21-0801.05.pdiff [77.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-08-22-0201.21-F-2021-08-21-0801.05.pdiff [67.1 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-08-22-0201.21-F-2021-08-21-0801.05.pdiff [77.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-08-22-0201.21-F-2021-08-21-0801.05.pdiff [67.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8591 kB] Fetched 9027 kB in 4s (2266 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2904 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-2 (dsc) [2248 B] Get:2 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-2 (tar) [2890 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-2 (diff) [11.3 kB] Fetched 2904 kB in 0s (84.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/freebayes-n0Ajr3/freebayes-1.3.5' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-n0Ajr3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [514 B] Get:5 copy:/<>/apt_archive ./ Packages [575 B] Fetched 2046 B in 0s (77.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-cross-base gcc-11-base:arm64 gcc-11-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.1:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libdpkg-perl libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp24:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6 libncurses6:arm64 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libperl5.32 libpipeline1 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsigsegv2 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl1.1:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libvcflib-dev:arm64 libvcflib1:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl perl-modules-5.32 pkg-config po-debconf python3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto samtools:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 glibc-doc manpages-dev:arm64 libcurl4-doc:arm64 libgnutls28-dev:arm64 libidn11-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 gnupg git bzr gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 libstdc++-10-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support cwltool:arm64 Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:arm64 libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:arm64 libldap-common:arm64 libgpm2 libgpm2:arm64 publicsuffix:arm64 ca-certificates libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-cross-base gcc-11-base:arm64 gcc-11-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.1:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libdpkg-perl libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi7:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp24:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6 libncurses6:arm64 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libperl5.32 libpipeline1 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsigsegv2 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl1.1:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libvcflib-dev:arm64 libvcflib1:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl perl-modules-5.32 pkg-config po-debconf python3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto samtools:arm64 sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 187 newly installed, 0 to remove and 0 not upgraded. Need to get 250 MB of archives. After this operation, 1089 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1000 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-1 [142 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 4.0.0 [30.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-11-base arm64 11.2.0-2 [204 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.4.0-2 [200 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-1 [819 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 bc amd64 1.07.1-2+b2 [109 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.37-4 [2903 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-1 [104 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-16 [2254 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu-base amd64 10.2.1-6cross1 [202 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-aarch64-linux-gnu amd64 10.2.1-6cross1 [46.6 MB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:10.2.1-1 [16.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-2cross1 [200 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.31-9cross4 [1233 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 11.2.0-2cross1 [34.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 11.2.0-2cross1 [93.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 11.2.0-2cross1 [23.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 11.2.0-2cross1 [9244 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 11.2.0-2cross1 [2071 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 11.2.0-2cross1 [851 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 11.2.0-2cross1 [2039 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 11.2.0-2cross1 [482 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 11.2.0-2cross1 [817 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-arm64-cross all 10.2.1-6cross1 [880 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu amd64 10.2.1-6cross1 [53.2 MB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:10.2.1-1 [1460 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.10.13-1cross4 [1375 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.31-9cross4 [2030 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-arm64-cross all 10.2.1-6cross1 [1682 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-aarch64-linux-gnu amd64 10.2.1-6cross1 [49.7 MB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:10.2.1-1 [1176 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.4.1 [191 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.4.1 [1039 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 11.2.0-2 [34.4 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.31-16 [2462 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.4.0-2 [2675 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 11.2.0-2 [9468 B] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 11.2.0-2 [522 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libbamtools2.5.1 arm64 2.5.1+dfsg-9 [142 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 libbamtools-dev arm64 2.5.1+dfsg-9 [197 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 libbwa-dev arm64 0.7.17-6+b1 [138 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-4 [46.5 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.10.46-4 [1342 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.25-1 [91.0 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.25-1 [109 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.46.4-1 [75.0 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.18.3-6 [64.8 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.18.3-6 [114 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6.1-2 [15.4 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1k-1 [1386 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.18.3-6 [346 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.18.3-6 [155 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc3 arm64 1.3.2-2 [80.4 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc-dev arm64 1.3.2-2 [193 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.31-16 [1945 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.2.1+dfsg-1 [541 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle8 arm64 3.7.3-1 [277 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed6 arm64 3.7.3-1 [316 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-6 [373 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.3.2-2 [94.6 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libffi7 arm64 3.3-6 [20.6 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.23.22-1 [328 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.16.0-2 [53.5 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.7.1-5 [1262 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.8 [622 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.9.0-3 [162 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.7-2 [47.9 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate-dev arm64 1.7-2 [44.6 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-3 [4416 B] Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-3 [4488 B] Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libfastahack0 arm64 1.0.0+dfsg-7 [23.7 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main arm64 libfastahack-dev arm64 1.0.0+dfsg-7 [26.0 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 libfml0 arm64 0.1+git20190320.b499514-1+b1 [65.9 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libfml-dev arm64 0.1+git20190320.b499514-1+b1 [79.5 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 11.2.0-2 [96.0 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 11.2.0-2 [23.7 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 11.2.0-2 [852 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 11.2.0-2 [2045 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 11.2.0-2 [818 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.4.0-2 [881 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.68.4-1 [1390 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.5-2 [165 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main arm64 libhts3 arm64 1.11-4 [346 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.11-4 [3856 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp-dev arm64 1.9.4-4 [25.4 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main arm64 libtinfo6 arm64 6.2+20201114-2 [335 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main arm64 libssw0 arm64 1.1-13 [18.5 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main arm64 libseqlib2 arm64 1.2.0+dfsg-4 [148 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main arm64 libssw-dev arm64 1.1-13 [21.9 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main arm64 libseqlib-dev arm64 1.2.0+dfsg-4 [204 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-11 [32.8 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-11 [37.4 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.4.0-2 [1670 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main arm64 libtabixpp0 arm64 1.1.0-4 [8788 B] Get:180 http://debian.oregonstate.edu/debian unstable/main arm64 libtabixpp-dev arm64 1.1.0-4 [8108 B] Get:181 http://debian.oregonstate.edu/debian unstable/main arm64 libvcflib1 arm64 1.0.2+dfsg-2 [133 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main arm64 libvcflib-dev arm64 1.0.2+dfsg-2 [84.9 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.57.0+really0.56.2-0.1 [437 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main arm64 samtools arm64 1.11-1 [526 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 250 MB in 2s (104 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10519 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-1_amd64.deb ... Unpacking bsdextrautils (2.37.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../05-perl-modules-5.32_5.32.1-5_all.deb ... Unpacking perl-modules-5.32 (5.32.1-5) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../06-libperl5.32_5.32.1-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-5) ... Selecting previously unselected package perl. Preparing to unpack .../07-perl_5.32.1-5_amd64.deb ... Unpacking perl (5.32.1-5) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../08-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../09-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../10-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../11-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... /usr/bin/which: this version of 'which' is deprecated and should not be used. Selecting previously unselected package python3-minimal. (Reading database ... 13355 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../3-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../4-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../5-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... 13760 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package gcc-11-base:arm64. Preparing to unpack .../001-gcc-11-base_11.2.0-2_arm64.deb ... Unpacking gcc-11-base:arm64 (11.2.0-2) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../002-gcc-9-base_9.4.0-2_arm64.deb ... Unpacking gcc-9-base:arm64 (9.4.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../008-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../009-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.4-1_all.deb ... Unpacking automake (1:1.16.4-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../015-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package bc. Preparing to unpack .../016-bc_1.07.1-2+b2_amd64.deb ... Unpacking bc (1.07.1-2+b2) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../017-binutils-aarch64-linux-gnu_2.37-4_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.37-4) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../018-libcrypt-dev_1%3a4.4.25-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.25-1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../019-libtirpc-dev_1.3.2-2_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../020-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. 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Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up gcc-aarch64-linux-gnu (4:10.2.1-1) ... Setting up debhelper (13.4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-arm64 (12.9) ... Setting up libgcc-s1:arm64 (11.2.0-2) ... Setting up libc6:arm64 (2.31-16) ... Setting up libtasn1-6:arm64 (4.16.0-2) ... Setting up libbz2-1.0:arm64 (1.0.8-4) ... 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Processing triggers for libc-bin (2.31-16) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-4 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-16 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-arm64-cross_10.2.1-6cross1 libstdc++-9-dev_9.4.0-2 libstdc++6_11.2.0-2 libstdc++6-arm64-cross_11.2.0-2cross1 linux-libc-dev_5.10.46-4 Package versions: adduser_3.118 apt_2.3.8 autoconf_2.69-14 automake_1:1.16.4-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.51 bash_5.1-3+b1 bc_1.07.1-2+b2 binutils_2.37-4 binutils-aarch64-linux-gnu_2.37-4 binutils-common_2.37-4 binutils-x86-64-linux-gnu_2.37-4 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-aarch64-linux-gnu_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-aarch64-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu1 crossbuild-essential-arm64_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.4.1 debian-archive-keyring_2021.1.1 debianutils_5.3-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu1 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 fdisk_2.37.2-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-aarch64-linux-gnu_10.2.1-6cross1 g++-aarch64-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-aarch64-linux-gnu_10.2.1-6cross1 gcc-10-aarch64-linux-gnu-base_10.2.1-6cross1 gcc-10-base_10.2.1-6 gcc-10-cross-base_10.2.1-6cross1 gcc-11-base_11.2.0-2 gcc-11-cross-base_11.2.0-2cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-2 gcc-aarch64-linux-gnu_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.8 libarchive-zip-perl_1.68-1 libasan5_9.4.0-2 libasan6_11.2.0-2 libasan6-arm64-cross_11.2.0-2cross1 libatomic1_11.2.0-2 libatomic1-arm64-cross_11.2.0-2cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbamtools-dev_2.5.1+dfsg-9 libbamtools2.5.1_2.5.1+dfsg-9 libbinutils_2.37-4 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b2 libbwa-dev_0.7.17-6+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-16 libc-dev-bin_2.31-16 libc6_2.31-16 libc6-arm64-cross_2.31-9cross4 libc6-dev_2.31-16 libc6-dev-arm64-cross_2.31-9cross4 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-2 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 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libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.2-1 libpython3.9-stdlib_3.9.2-1 libquadmath0_11.2.0-2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libseqlib-dev_1.2.0+dfsg-4 libseqlib2_1.2.0+dfsg-4 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsmithwaterman-dev_0.0+git20160702.2610e25-11 libsmithwaterman0_0.0+git20160702.2610e25-11 libsqlite3-0_3.34.1-3 libss2_1.46.4-1 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-arm64-cross_10.2.1-6cross1 libstdc++-9-dev_9.4.0-2 libstdc++6_11.2.0-2 libstdc++6-arm64-cross_11.2.0-2cross1 libsub-override-perl_0.09-2 libsystemd0_247.9-1 libtabixpp-dev_1.1.0-4 libtabixpp0_1.1.0-4 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-2 libtsan0-arm64-cross_11.2.0-2cross1 libubsan1_11.2.0-2 libubsan1-arm64-cross_11.2.0-2cross1 libuchardet0_0.0.7-1 libudev1_247.9-1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libvcflib-dev_1.0.2+dfsg-2 libvcflib1_1.0.2+dfsg-2 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.46-4 linux-libc-dev-arm64-cross_5.10.13-1cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 meson_0.57.0+really0.56.2-0.1 mount_2.37.2-1 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 ninja-build_1.10.1-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-5 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-minimal_3.9.2-3 python3-pkg-resources_52.0.0-4 python3.9_3.9.2-1 python3.9-minimal_3.9.2-1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 samtools_1.11-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.5-2 Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel , libvcflib-tools (>= 1.0.0~rc1+dfsg1-6) Package-List: freebayes deb science optional arch=any Checksums-Sha1: 7e677dd88ba1721ec5a397cbd72015fe530861af 2890213 freebayes_1.3.5.orig.tar.gz 3309db3e34e0e0dcfccdac05473408494c896505 11292 freebayes_1.3.5-2.debian.tar.xz Checksums-Sha256: af195a8c54b742d01af5a7e1fd1781a89290d726b310216c83e78c650d7aee49 2890213 freebayes_1.3.5.orig.tar.gz 56a9e22e387e48d198ec1f868062dccd44d3fd386301d449134c42c06b8f6d9c 11292 freebayes_1.3.5-2.debian.tar.xz Files: 0474f30e2cc128973cac9d12ea726d50 2890213 freebayes_1.3.5.orig.tar.gz 4264474b005d3e6fe5d94b8b418401fd 11292 freebayes_1.3.5-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEZHeEUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEP8BAAm4s2fiYRZwsp5/KlTkEhUVe+MVf+ DSAH/7UPv0ekS16U+ZsWH/EuKlktnUUvxH03B70sqfvYA58q6wmcNylHWNVbqKkB AuUMt+nBcE23FTXPgCIxrG9UIzuet/+BynqOF1jEusP0dUMxlbm/X2AWNzLfKzPv fagVo/K+JMQ9sskpROmxqFUNYOvsbV35AMK2k1liycG63OMnB5fL8+OxxqV7+sf9 lZMh+TLdwbhhBuLWnT82FBrLnH8KZQq4TVp0vIMB08BRgX/d1OSGrvGhfbbsBRdV PFZv2rarYe0csbfGIk7Abr9cxyr/X7uJYda9M+Z7+xtmzI8SD5oW+wBEBA/ROimT 7SALNPUfeH2EeLOCDfFHKpeScAo5sPvqGaGHBnVBSMjlgbJkHE+uEcQqW+zTDfzc SlSwl4mdFUTPuXQPN5bcj7RbTtMN1bgF6NdVu1fiesif1hVem9FmDoL0Une5XbxU veGOxVnt7rP+V29QyADd200Kyq52BayLPqaxZD3HIKZZj9y4RXqWT0Vy6JSmECAH +8WT8xDfqWTiNFCZzRcHnxbMwxLc50AMvkMucXYGFfY1OiJMfQSsl+uYKzEaXpUJ UUZ+1JyJfMbMwrbLjk2Cb8MqSOEEbw2eKDNr8XxwaWNYcrnn/RFrvfmQRQQ00Wya mR8vLxn+FjCF5WQ= =5nV1 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.d73WdKha/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 15 14:00:01 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./freebayes_1.3.5-2.dsc dpkg-source: info: extracting freebayes in /<> dpkg-source: info: unpacking freebayes_1.3.5.orig.tar.gz dpkg-source: info: unpacking freebayes_1.3.5-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-617fc57a-025f-4c1f-9d90-54cec1836557 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package freebayes dpkg-buildpackage: info: source version 1.3.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=meson --builddir=build dh_auto_clean -O--buildsystem=meson -O--builddir=build dh_autoreconf_clean -O--buildsystem=meson -O--builddir=build dh_clean -O--buildsystem=meson -O--builddir=build debian/rules binary-arch dh binary-arch --buildsystem=meson --builddir=build dh_update_autotools_config -a -O--buildsystem=meson -O--builddir=build dh_autoreconf -a -O--buildsystem=meson -O--builddir=build dh_auto_configure -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --cross-file /<>/debian/.debhelper/generated/_source/meson-cross-file.conf DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 0.56.2 Source dir: /<> Build dir: /<>/build Build type: cross build Project name: freebayes Project version: 1.3.4 Using 'CFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C compiler for the host machine: /usr/bin/aarch64-linux-gnu-gcc (gcc 10.2.1 "aarch64-linux-gnu-gcc (Debian 10.2.1-6) 10.2.1 20210110") C linker for the host machine: /usr/bin/aarch64-linux-gnu-gcc ld.bfd 2.37 Using 'CXXFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 10.2.1 "aarch64-linux-gnu-g++ (Debian 10.2.1-6) 10.2.1 20210110") C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.37 C compiler for the build machine: cc (gcc 10.2.1 "cc (Debian 10.2.1-6) 10.2.1 20210110") C linker for the build machine: cc ld.bfd 2.37 C++ compiler for the build machine: c++ (gcc 10.2.1 "c++ (Debian 10.2.1-6) 10.2.1 20210110") C++ linker for the build machine: c++ ld.bfd 2.37 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: x86_64 Host machine cpu: x86_64 Target machine cpu family: aarch64 Target machine cpu: arm64 Found pkg-config: /usr/bin/aarch64-linux-gnu-pkg-config (0.29.2) Run-time dependency zlib found: YES 1.2.11 Run-time dependency liblzma found: YES 5.2.5 Run-time dependency threads found: YES Run-time dependency htslib found: YES 1.11-4 Library tabixpp found: YES Run-time dependency libvcflib found: YES 1.0 Run-time dependency libseqlib found: YES 1.0 Compiler for C++ supports arguments -fpermissive: YES Compiler for C++ supports arguments -Wno-reorder: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Program prove found: YES (/usr/bin/prove) Build targets in project: 3 Option optimization is: 0 [default: 3] Found ninja-1.10.1 at /usr/bin/ninja dh_auto_build -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 ninja -j1 -v [1/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Allele.cpp.o -MF libfreebayes_common.a.p/src_Allele.cpp.o.d -o libfreebayes_common.a.p/src_Allele.cpp.o -c ../src/Allele.cpp ../src/Allele.cpp: In member function ‘const short int Allele::currentQuality() const’: ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_GENOTYPE’ not handled in switch [-Wswitch] 160 | switch (this->type) { | ^ ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_NULL’ not handled in switch [-Wswitch] [2/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp [3/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_BedReader.cpp.o -MF libfreebayes_common.a.p/src_BedReader.cpp.o.d -o libfreebayes_common.a.p/src_BedReader.cpp.o -c ../src/BedReader.cpp [4/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Bias.cpp.o -MF libfreebayes_common.a.p/src_Bias.cpp.o.d -o libfreebayes_common.a.p/src_Bias.cpp.o -c ../src/Bias.cpp [5/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_CNV.cpp.o -MF libfreebayes_common.a.p/src_CNV.cpp.o.d -o libfreebayes_common.a.p/src_CNV.cpp.o -c ../src/CNV.cpp [6/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Contamination.cpp.o -MF libfreebayes_common.a.p/src_Contamination.cpp.o.d -o libfreebayes_common.a.p/src_Contamination.cpp.o -c ../src/Contamination.cpp [7/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_DataLikelihood.cpp.o -MF libfreebayes_common.a.p/src_DataLikelihood.cpp.o.d -o libfreebayes_common.a.p/src_DataLikelihood.cpp.o -c ../src/DataLikelihood.cpp [8/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Dirichlet.cpp.o -MF libfreebayes_common.a.p/src_Dirichlet.cpp.o.d -o libfreebayes_common.a.p/src_Dirichlet.cpp.o -c ../src/Dirichlet.cpp [9/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Ewens.cpp.o -MF libfreebayes_common.a.p/src_Ewens.cpp.o.d -o libfreebayes_common.a.p/src_Ewens.cpp.o -c ../src/Ewens.cpp [10/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_FBFasta.cpp.o -MF libfreebayes_common.a.p/src_FBFasta.cpp.o.d -o libfreebayes_common.a.p/src_FBFasta.cpp.o -c ../src/FBFasta.cpp [11/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Genotype.cpp.o -MF libfreebayes_common.a.p/src_Genotype.cpp.o.d -o libfreebayes_common.a.p/src_Genotype.cpp.o -c ../src/Genotype.cpp [12/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_IndelAllele.cpp.o -MF libfreebayes_common.a.p/src_IndelAllele.cpp.o.d -o libfreebayes_common.a.p/src_IndelAllele.cpp.o -c ../src/IndelAllele.cpp [13/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_LeftAlign.cpp.o -MF libfreebayes_common.a.p/src_LeftAlign.cpp.o.d -o libfreebayes_common.a.p/src_LeftAlign.cpp.o -c ../src/LeftAlign.cpp [14/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Marginals.cpp.o -MF libfreebayes_common.a.p/src_Marginals.cpp.o.d -o libfreebayes_common.a.p/src_Marginals.cpp.o -c ../src/Marginals.cpp [15/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Multinomial.cpp.o -MF libfreebayes_common.a.p/src_Multinomial.cpp.o.d -o libfreebayes_common.a.p/src_Multinomial.cpp.o -c ../src/Multinomial.cpp [16/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_NonCall.cpp.o -MF libfreebayes_common.a.p/src_NonCall.cpp.o.d -o libfreebayes_common.a.p/src_NonCall.cpp.o -c ../src/NonCall.cpp [17/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Parameters.cpp.o -MF libfreebayes_common.a.p/src_Parameters.cpp.o.d -o libfreebayes_common.a.p/src_Parameters.cpp.o -c ../src/Parameters.cpp [18/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Result.cpp.o -MF libfreebayes_common.a.p/src_Result.cpp.o.d -o libfreebayes_common.a.p/src_Result.cpp.o -c ../src/Result.cpp [19/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_ResultData.cpp.o -MF libfreebayes_common.a.p/src_ResultData.cpp.o.d -o libfreebayes_common.a.p/src_ResultData.cpp.o -c ../src/ResultData.cpp [20/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Sample.cpp.o -MF libfreebayes_common.a.p/src_Sample.cpp.o.d -o libfreebayes_common.a.p/src_Sample.cpp.o -c ../src/Sample.cpp [21/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -MF libfreebayes_common.a.p/src_SegfaultHandler.cpp.o.d -o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -c ../src/SegfaultHandler.cpp [22/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Utility.cpp.o -MF libfreebayes_common.a.p/src_Utility.cpp.o.d -o libfreebayes_common.a.p/src_Utility.cpp.o -c ../src/Utility.cpp In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmathuint.h: In function ‘BigFloat big_exp(long double)’: ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& x)+32).ttmath::UInt<2>::table[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& x)+32).ttmath::UInt<2>::table[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmathint.h:652:40: warning: ‘x.ttmath::UInt<8>::table[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmathuint.h: In function ‘long double logsumexp_probs(const std::vector&)’: ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& maxNb)+32).ttmath::UInt<2>::table[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& maxNb)+32).ttmath::UInt<2>::table[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmathint.h:652:40: warning: ‘maxNb.ttmath::UInt<8>::table[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmathuint.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& result)+32).ttmath::UInt<2>::table[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& result)+32).ttmath::UInt<2>::table[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& result)+32).ttmath::UInt<2>::table[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../ttmath/ttmathuint.h:2740:22: warning: ‘*((void*)(& result)+32).ttmath::UInt<2>::table[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] [23/27] /usr/bin/aarch64-linux-gnu-g++ -Ibamleftalign.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ bamleftalign.p/src_bamleftalign.cpp.o -MF bamleftalign.p/src_bamleftalign.cpp.o.d -o bamleftalign.p/src_bamleftalign.cpp.o -c ../src/bamleftalign.cpp [24/27] rm -f libfreebayes_common.a && /usr/bin/aarch64-linux-gnu-ar csrD libfreebayes_common.a libfreebayes_common.a.p/src_Allele.cpp.o libfreebayes_common.a.p/src_AlleleParser.cpp.o libfreebayes_common.a.p/src_BedReader.cpp.o libfreebayes_common.a.p/src_Bias.cpp.o libfreebayes_common.a.p/src_CNV.cpp.o libfreebayes_common.a.p/src_Contamination.cpp.o libfreebayes_common.a.p/src_DataLikelihood.cpp.o libfreebayes_common.a.p/src_Dirichlet.cpp.o libfreebayes_common.a.p/src_Ewens.cpp.o libfreebayes_common.a.p/src_FBFasta.cpp.o libfreebayes_common.a.p/src_Genotype.cpp.o libfreebayes_common.a.p/src_IndelAllele.cpp.o libfreebayes_common.a.p/src_LeftAlign.cpp.o libfreebayes_common.a.p/src_Marginals.cpp.o libfreebayes_common.a.p/src_Multinomial.cpp.o libfreebayes_common.a.p/src_NonCall.cpp.o libfreebayes_common.a.p/src_Parameters.cpp.o libfreebayes_common.a.p/src_Result.cpp.o libfreebayes_common.a.p/src_ResultData.cpp.o libfreebayes_common.a.p/src_Sample.cpp.o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o libfreebayes_common.a.p/src_Utility.cpp.o [25/27] /usr/bin/aarch64-linux-gnu-g++ -Ifreebayes.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ freebayes.p/src_freebayes.cpp.o -MF freebayes.p/src_freebayes.cpp.o.d -o freebayes.p/src_freebayes.cpp.o -c ../src/freebayes.cpp [26/27] /usr/bin/aarch64-linux-gnu-g++ -o freebayes freebayes.p/src_freebayes.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so -ltabixpp /usr/lib/aarch64-linux-gnu/libvcflib.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a -ltabixpp -Wl,--end-group [27/27] /usr/bin/aarch64-linux-gnu-g++ -o bamleftalign bamleftalign.p/src_bamleftalign.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libvcflib.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a -ltabixpp -Wl,--end-group create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson -O--builddir=build dh_prep -a -O--buildsystem=meson -O--builddir=build dh_auto_install -a -O--buildsystem=meson -O--builddir=build cd build && DESTDIR=/<>/debian/freebayes LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing freebayes to /<>/debian/freebayes/usr/bin Installing bamleftalign to /<>/debian/freebayes/usr/bin dh_installdocs -a -O--buildsystem=meson -O--builddir=build dh_installchangelogs -a -O--buildsystem=meson -O--builddir=build dh_installexamples -a -O--buildsystem=meson -O--builddir=build dh_installsystemduser -a -O--buildsystem=meson -O--builddir=build dh_perl -a -O--buildsystem=meson -O--builddir=build dh_link -a -O--buildsystem=meson -O--builddir=build dh_strip_nondeterminism -a -O--buildsystem=meson -O--builddir=build dh_compress -a -O--buildsystem=meson -O--builddir=build dh_fixperms -a -O--buildsystem=meson -O--builddir=build dh_missing -a -O--buildsystem=meson -O--builddir=build dh_dwz -a -a -O--buildsystem=meson -O--builddir=build dh_strip -a -a -O--buildsystem=meson -O--builddir=build dh_makeshlibs -a -a -O--buildsystem=meson -O--builddir=build dh_shlibdeps -a -a -O--buildsystem=meson -O--builddir=build dh_installdeb -a -O--buildsystem=meson -O--builddir=build dh_gencontrol -a -O--buildsystem=meson -O--builddir=build dh_md5sums -a -O--buildsystem=meson -O--builddir=build dh_builddeb -a -O--buildsystem=meson -O--builddir=build dpkg-deb: building package 'freebayes' in '../freebayes_1.3.5-2_arm64.deb'. dpkg-deb: building package 'freebayes-dbgsym' in '../freebayes-dbgsym_1.3.5-2_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../freebayes_1.3.5-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-08-22T04:20:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ freebayes_1.3.5-2_arm64.changes: -------------------------------- Format: 1.8 Date: Sun, 15 Aug 2021 19:27:47 +0530 Source: freebayes Binary: freebayes freebayes-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.3.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: freebayes - Bayesian haplotype-based polymorphism discovery and genotyping Closes: 988556 Changes: freebayes (1.3.5-2) unstable; urgency=medium . * Team Upload. * Remove B-D on python3 (Closes: #988556) Checksums-Sha1: 1a630a49b83d01fbc3f2dffe1d7ea8faae7091e9 6383944 freebayes-dbgsym_1.3.5-2_arm64.deb 643c5901c068ae807aaebb6a7e6895c7b28d834d 6918 freebayes_1.3.5-2_arm64.buildinfo 5ccc248a64bdad0156c46ae7be115737754b339e 1409332 freebayes_1.3.5-2_arm64.deb Checksums-Sha256: c0bb811812cbefd6e15ccc63e446c348f3540fc761ce7aabe9a05bf036a73d79 6383944 freebayes-dbgsym_1.3.5-2_arm64.deb 33e0d50cf6d62cf9372c50cb51bfa9b6b9b92a38788c99a4dab0f555c7ab266a 6918 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freebayes_1.3.5-2_arm64.deb Checksums-Sha256: c0bb811812cbefd6e15ccc63e446c348f3540fc761ce7aabe9a05bf036a73d79 6383944 freebayes-dbgsym_1.3.5-2_arm64.deb 8e1b1b415b3f469c92c49e70ffba0a1723fd8d3931a8e8591507c0900ecd438b 1409332 freebayes_1.3.5-2_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 22 Aug 2021 04:20:32 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.4-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.51), bash (= 5.1-3+b1), bc (= 1.07.1-2+b2), binutils (= 2.37-4), binutils-common (= 2.37-4), binutils-x86-64-linux-gnu (= 2.37-4), bsdextrautils (= 2.37.2-1), bsdutils (= 1:2.37.2-1), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.4.1), debianutils (= 5.3-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gcc-11-base (= 11.2.0-2), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-2), libatomic1 (= 11.2.0-2), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0.5-1), libaudit1 (= 1:3.0.5-1), libbamtools-dev (= 2.5.1+dfsg-9), libbamtools2.5.1 (= 2.5.1+dfsg-9), libbinutils (= 2.37-4), libblkid1 (= 2.37.2-1), libbrotli1 (= 1.0.9-2+b2), libbwa-dev (= 0.7.17-6+b1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-16), libc-dev-bin (= 2.31-16), libc6 (= 2.31-16), libc6-dev (= 2.31-16), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 11.2.0-2), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-1), libcrypt1 (= 1:4.4.25-1), libctf-nobfd0 (= 2.37-4), libctf0 (= 2.37-4), libcurl3-gnutls (= 7.74.0-1.3+b1), libcurl4-gnutls-dev (= 7.74.0-1.3+b1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.4.1), libdeflate-dev (= 1.7-2), libdeflate0 (= 1.7-2), libdisorder-dev (= 0.0.2+git20130809.8062ee1-3), libdisorder0 (= 0.0.2+git20130809.8062ee1-3), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libexpat1 (= 2.2.10-2), libfastahack-dev (= 1.0.0+dfsg-7), libfastahack0 (= 1.0.0+dfsg-7), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.12.0-1), libfml-dev (= 0.1+git20190320.b499514-1+b1), libfml0 (= 0.1+git20190320.b499514-1+b1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 11.2.0-2), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libglib2.0-0 (= 2.68.4-1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.1-5), libgomp1 (= 11.2.0-2), libgpg-error0 (= 1.42-2), libgssapi-krb5-2 (= 1.18.3-6), libhogweed6 (= 3.7.3-1), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.23-1), libitm1 (= 11.2.0-2), libjsoncpp-dev (= 1.9.4-4), libjsoncpp24 (= 1.9.4-4), libk5crypto3 (= 1.18.3-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-6), libkrb5support0 (= 1.18.3-6), libldap-2.4-2 (= 2.4.57+dfsg-3), liblsan0 (= 11.2.0-2), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-1), libmpc3 (= 1.2.0-1), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20201114-2), libncursesw6 (= 6.2+20201114-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-9), libpam-modules-bin (= 1.4.0-9), libpam-runtime (= 1.4.0-9), libpam0g (= 1.4.0-9), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-5), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.2), libpython3-stdlib (= 3.9.2-3), libpython3.9-minimal (= 3.9.2-1), libpython3.9-stdlib (= 3.9.2-1), libquadmath0 (= 11.2.0-2), libreadline8 (= 8.1-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libseqlib-dev (= 1.2.0+dfsg-4), libseqlib2 (= 1.2.0+dfsg-4), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-1), libsmithwaterman-dev (= 0.0+git20160702.2610e25-11), libsmithwaterman0 (= 0.0+git20160702.2610e25-11), libsqlite3-0 (= 3.34.1-3), libssh2-1 (= 1.9.0-3), libssl1.1 (= 1.1.1k-1), libssw-dev (= 1.1-13), libssw0 (= 1.1-13), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 11.2.0-2), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-1), libtabixpp-dev (= 1.1.0-4), libtabixpp0 (= 1.1.0-4), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-2), libubsan1 (= 11.2.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-1), libvcflib-dev (= 1.0.2+dfsg-2), libvcflib1 (= 1.0.2+dfsg-2), libxml2 (= 2.9.10+dfsg-6.7), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.46-4), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), media-types (= 4.0.0), meson (= 0.57.0+really0.56.2-0.1), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), ninja-build (= 1.10.1-1), patch (= 2.7.6-7), perl (= 5.32.1-5), perl-base (= 5.32.1-5), perl-modules-5.32 (= 5.32.1-5), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.2-3), python3-minimal (= 3.9.2-3), python3-pkg-resources (= 52.0.0-4), python3.9 (= 3.9.2-1), python3.9-minimal (= 3.9.2-1), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-4), samtools (= 1.11-1), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), tzdata (= 2021a-1), util-linux (= 2.37.2-1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1629035867" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ freebayes-dbgsym_1.3.5-2_arm64.deb ---------------------------------- new Debian package, version 2.0. size 6383944 bytes: control archive=644 bytes. 420 bytes, 12 lines control 299 bytes, 3 lines md5sums Package: freebayes-dbgsym Source: freebayes Version: 1.3.5-2 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 6514 Depends: freebayes (= 1.3.5-2) Section: debug Priority: optional Description: debug symbols for freebayes Build-Ids: 8fe9769545dc66a8c198d4699dde53ba1dbf9da5 e4c28b9a58ce242f69d2318b0278432735847351 drwxr-xr-x root/root 0 2021-08-15 13:57 ./ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/lib/debug/.build-id/8f/ -rw-r--r-- root/root 569592 2021-08-15 13:57 ./usr/lib/debug/.build-id/8f/e9769545dc66a8c198d4699dde53ba1dbf9da5.debug drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/lib/debug/.build-id/e4/ -rw-r--r-- root/root 5798296 2021-08-15 13:57 ./usr/lib/debug/.build-id/e4/c28b9a58ce242f69d2318b0278432735847351.debug drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 287480 2021-08-15 13:57 ./usr/lib/debug/.dwz/aarch64-linux-gnu/freebayes.debug drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-15 13:57 ./usr/share/doc/freebayes-dbgsym -> freebayes freebayes_1.3.5-2_arm64.deb --------------------------- new Debian package, version 2.0. size 1409332 bytes: control archive=2092 bytes. 845 bytes, 17 lines control 4277 bytes, 51 lines md5sums Package: freebayes Version: 1.3.5-2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 3733 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.5), libseqlib2 (>= 1.2.0), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.2+dfsg), zlib1g (>= 1:1.1.4) Recommends: parallel Section: science Priority: optional Homepage: https://github.com/ekg/freebayes Description: Bayesian haplotype-based polymorphism discovery and genotyping FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. drwxr-xr-x root/root 0 2021-08-15 13:57 ./ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/bin/ -rwxr-xr-x root/root 1142680 2021-08-15 13:57 ./usr/bin/bamleftalign -rwxr-xr-x root/root 1773328 2021-08-15 13:57 ./usr/bin/freebayes drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-15 13:57 ./usr/share/doc/freebayes/ -rw-r--r-- root/root 9562 2021-02-10 09:21 ./usr/share/doc/freebayes/README.md.gz -rw-r--r-- root/root 278 2021-05-15 14:12 ./usr/share/doc/freebayes/README.test -rw-r--r-- root/root 83 2021-05-15 14:12 ./usr/share/doc/freebayes/README.test_data -rw-r--r-- root/root 2505 2021-02-10 09:21 ./usr/share/doc/freebayes/RELEASE-NOTES.md -rw-r--r-- root/root 1694 2021-08-15 13:57 ./usr/share/doc/freebayes/changelog.Debian.gz -rw-r--r-- 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./usr/share/doc/freebayes/examples/test.bam -rw-r--r-- root/root 96 2021-05-15 14:12 ./usr/share/doc/freebayes/examples/test.bam.bai -rw-r--r-- root/root 112 2021-05-15 14:12 ./usr/share/doc/freebayes/examples/test.bed -rw-r--r-- root/root 17 2021-05-15 14:12 ./usr/share/doc/freebayes/examples/test.ref -rw-r--r-- root/root 15 2021-05-15 14:12 ./usr/share/doc/freebayes/examples/test.ref.fai -rw-r--r-- root/root 550 2021-05-15 14:12 ./usr/share/doc/freebayes/examples/test.vcf drwxr-xr-x root/root 0 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/ -rw-r--r-- root/root 636 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/1read.bam -rw-r--r-- root/root 96 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/1read.bam.bai -rw-r--r-- root/root 287213 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam -rw-r--r-- root/root 96 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam.bai -rw-r--r-- root/root 155615 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.cram -rw-r--r-- root/root 16307 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.giab.vcf -rw-r--r-- root/root 287228 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam -rw-r--r-- root/root 96 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam.bai -rw-r--r-- root/root 12581 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.fa -rw-r--r-- root/root 33 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.fa.fai -rw-r--r-- root/root 2394 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.vcf.gz -rw-r--r-- root/root 120 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.vcf.gz.tbi -rw-r--r-- root/root 12565 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q with spaces.fa -rw-r--r-- root/root 16 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q with spaces.fa.fai -rw-r--r-- root/root 36 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q with spaces.regions -rw-r--r-- root/root 12565 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.fa -rw-r--r-- root/root 16 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.fa.fai -rw-r--r-- root/root 36 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.regions -rw-r--r-- root/root 4168 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.vcf.gz -rw-r--r-- root/root 102 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.vcf.gz.tbi -rw-r--r-- root/root 2378 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz -rw-r--r-- root/root 91 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz.tbi -rw-r--r-- root/root 924 2021-05-15 14:12 ./usr/share/doc/freebayes/run-unit-test.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [648 B] Get:5 copy:/<>/apt_archive ./ Packages [706 B] Fetched 2317 B in 0s (90.8 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 6586 kB of archives. After this operation, 19.5 MB of additional disk space will be used. 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Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-1 [60.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012002-1 [351 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6586 kB in 0s (24.7 MB/s) Selecting previously unselected package diffstat. (Reading database ... 22809 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.40_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. 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Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up lzip (1.22-3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.118-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.27-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012002-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-16) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 183552 Build-Time: 122 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 45 Job: freebayes_1.3.5-2 Lintian: pass Machine Architecture: amd64 Package: freebayes Package-Time: 179 Source-Version: 1.3.5-2 Space: 183552 Status: successful Version: 1.3.5-2 -------------------------------------------------------------------------------- Finished at 2021-08-22T04:20:33Z Build needed 00:02:59, 183552k disk space