sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | freebayes 1.3.5-3 (amd64) Sun, 24 Oct 2021 12:32:53 +0000 | +==============================================================================+ Package: freebayes Version: 1.3.5-3 Source Version: 1.3.5-3 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-4cedc912-8223-444f-a374-68754273f4b9' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-oyNhnj/resolver-4v6fdD' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [8789 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9300 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8654 kB] Fetched 26.9 MB in 7s (3810 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2904 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main freebayes 1.3.5-3 (dsc) [2221 B] Get:2 http://mirror.einval.org/debian sid/main freebayes 1.3.5-3 (tar) [2890 kB] Get:3 http://mirror.einval.org/debian sid/main freebayes 1.3.5-3 (diff) [11.4 kB] Fetched 2904 kB in 0s (27.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/freebayes-oyNhnj/freebayes-1.3.5' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-oyNhnj' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [506 B] Get:5 copy:/<>/apt_archive ./ Packages [576 B] Fetched 2039 B in 0s (47.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbamtools-dev:amd64 libbamtools2.5.1:amd64 libbrotli1:amd64 libbwa-dev:amd64 libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl3-gnutls:amd64 libcurl4-gnutls-dev:amd64 libdb5.3:amd64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:amd64 libdeflate0:amd64 libdisorder-dev:amd64 libdisorder0:amd64 libelf1 libexpat1 libfastahack-dev:amd64 libfastahack0:amd64 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:amd64 libfml0:amd64 libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0 libgmp10:amd64 libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libhogweed6:amd64 libhts-dev:amd64 libhts3:amd64 libhtscodecs2:amd64 libicu67 libidn2-0:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp-dev:amd64 libjsoncpp24:amd64 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libldap-2.4-2:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblzma-dev:amd64 liblzma5:amd64 libmagic-mgc libmagic1 libmpdec3 libncurses6:amd64 libncursesw6 libnettle8:amd64 libnghttp2-14:amd64 libnsl-dev:amd64 libnsl2:amd64 libp11-kit0:amd64 libpipeline1 libpsl5:amd64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 librtmp1:amd64 libsasl2-2:amd64 libsasl2-modules-db:amd64 libseqlib-dev:amd64 libseqlib2:amd64 libsigsegv2 libsmithwaterman-dev:amd64 libsmithwaterman0:amd64 libsqlite3-0 libssh2-1:amd64 libssl1.1:amd64 libssw-dev:amd64 libssw0:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtabixpp-dev:amd64 libtabixpp0:amd64 libtasn1-6:amd64 libtinfo6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libvcflib-dev:amd64 libvcflib1:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types meson ninja-build pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal readline-common samtools:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-x86-64-linux-gnu gcc-11-doc gcc-11-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libcurl4-doc:amd64 libgnutls28-dev:amd64 libidn11-dev:amd64 libkrb5-dev:amd64 libldap2-dev:amd64 librtmp-dev:amd64 libssh2-1-dev:amd64 gnutls-bin:amd64 krb5-doc:amd64 krb5-user:amd64 liblzma-doc:amd64 libstdc++-11-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support readline-doc cwltool:amd64 Recommended packages: curl | wget | lynx ca-certificates:amd64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:amd64 libldap-common:amd64 libgpm2:amd64 libgpm2 publicsuffix:amd64 ca-certificates libsasl2-modules:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbamtools-dev:amd64 libbamtools2.5.1:amd64 libbrotli1:amd64 libbwa-dev:amd64 libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl3-gnutls:amd64 libcurl4-gnutls-dev:amd64 libdb5.3:amd64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:amd64 libdeflate0:amd64 libdisorder-dev:amd64 libdisorder0:amd64 libelf1 libexpat1 libfastahack-dev:amd64 libfastahack0:amd64 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:amd64 libfml0:amd64 libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0 libgmp10:amd64 libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libhogweed6:amd64 libhts-dev:amd64 libhts3:amd64 libhtscodecs2:amd64 libicu67 libidn2-0:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp-dev:amd64 libjsoncpp24:amd64 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libldap-2.4-2:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblzma-dev:amd64 liblzma5:amd64 libmagic-mgc libmagic1 libmpdec3 libncurses6:amd64 libncursesw6 libnettle8:amd64 libnghttp2-14:amd64 libnsl-dev:amd64 libnsl2:amd64 libp11-kit0:amd64 libpipeline1 libpsl5:amd64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 librtmp1:amd64 libsasl2-2:amd64 libsasl2-modules-db:amd64 libseqlib-dev:amd64 libseqlib2:amd64 libsigsegv2 libsmithwaterman-dev:amd64 libsmithwaterman0:amd64 libsqlite3-0 libssh2-1:amd64 libssl1.1:amd64 libssw-dev:amd64 libssw0:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtabixpp-dev:amd64 libtabixpp0:amd64 libtasn1-6:amd64 libtinfo6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libvcflib-dev:amd64 libvcflib1:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types meson ninja-build pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal readline-common samtools:amd64 sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 178 newly installed, 0 to remove and 0 not upgraded. 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http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 bc arm64 1.07.1-3 [107 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu-base arm64 11.2.0-9cross1 [205 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 cpp-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [48.2 MB] Get:38 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:11.2.0-2 [17.0 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.37-7 [2046 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 11.2.0-9cross1 [42.0 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 11.2.0-9cross1 [104 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 11.2.0-9cross1 [25.5 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 11.2.0-9cross1 [8764 B] Get:46 http://mirror.einval.org/debian sid/main arm64 libasan6-amd64-cross all 11.2.0-9cross1 [2044 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 11.2.0-9cross1 [885 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libtsan0-amd64-cross all 11.2.0-9cross1 [2010 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.32-1cross4 [1570 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 11.2.0-9cross1 [535 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 11.2.0-9cross1 [834 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 11.2.0-9cross1 [145 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-amd64-cross all 11.2.0-9cross1 [2357 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [54.7 MB] Get:55 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:11.2.0-2 [1460 B] Get:56 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.10.46-4cross4 [1468 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.32-1cross4 [2248 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-amd64-cross all 11.2.0-9cross1 [1952 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 g++-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [52.2 MB] Get:60 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:11.2.0-2 [1176 B] Get:61 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5 [632 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:77 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.5.2 [192 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.12.0-2 [15.5 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.185-2 [171 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.5.2 [1056 kB] Get:90 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-10 [42.0 kB] Get:91 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.32-4 [2820 kB] Get:92 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.2.0-10 [2050 kB] Get:93 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 11.2.0-10 [9052 B] Get:94 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-10 [577 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-9 [158 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 libbamtools-dev amd64 2.5.1+dfsg-9 [208 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libbwa-dev amd64 0.7.17-6+b1 [143 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-4 [45.8 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.14.12-1 [1434 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.25-2 [89.2 kB] Get:103 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:104 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.4-1 [75.2 kB] Get:105 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.18.3-7 [65.4 kB] Get:106 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.18.3-7 [113 kB] Get:107 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:108 http://mirror.einval.org/debian sid/main amd64 libssl1.1 amd64 1.1.1l-1 [1555 kB] Get:109 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.18.3-7 [363 kB] Get:110 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [165 kB] Get:111 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:112 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:113 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:114 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:115 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:116 http://mirror.einval.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg-2 [561 kB] Get:117 http://mirror.einval.org/debian sid/main amd64 libnettle8 amd64 3.7.3-1 [270 kB] Get:118 http://mirror.einval.org/debian sid/main amd64 libhogweed6 amd64 3.7.3-1 [320 kB] Get:119 http://mirror.einval.org/debian sid/main amd64 libunistring2 amd64 0.9.10-6 [384 kB] Get:120 http://mirror.einval.org/debian sid/main amd64 libidn2-0 amd64 2.3.2-2 [95.3 kB] Get:121 http://mirror.einval.org/debian sid/main amd64 libffi8 amd64 3.4.2-3 [24.8 kB] Get:122 http://mirror.einval.org/debian sid/main amd64 libp11-kit0 amd64 0.24.0-5 [346 kB] Get:123 http://mirror.einval.org/debian sid/main amd64 libtasn1-6 amd64 4.17.0-2 [55.2 kB] Get:124 http://mirror.einval.org/debian sid/main amd64 libgnutls30 amd64 3.7.2-2 [1350 kB] Get:125 http://mirror.einval.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8 [687 kB] Get:126 http://mirror.einval.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get:127 http://mirror.einval.org/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get:128 http://mirror.einval.org/debian sid/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1 [232 kB] Get:129 http://mirror.einval.org/debian sid/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:130 http://mirror.einval.org/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:131 http://mirror.einval.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:132 http://mirror.einval.org/debian sid/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB] Get:133 http://mirror.einval.org/debian sid/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+b1 [338 kB] Get:134 http://mirror.einval.org/debian sid/main amd64 libcurl4-gnutls-dev amd64 7.74.0-1.3+b1 [429 kB] Get:135 http://mirror.einval.org/debian sid/main amd64 libdeflate0 amd64 1.8-1 [53.1 kB] Get:136 http://mirror.einval.org/debian sid/main amd64 libdeflate-dev amd64 1.8-1 [46.7 kB] Get:137 http://mirror.einval.org/debian sid/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-3 [4488 B] Get:138 http://mirror.einval.org/debian sid/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-3 [4492 B] Get:139 http://mirror.einval.org/debian sid/main amd64 libfastahack0 amd64 1.0.0+dfsg-9 [25.5 kB] Get:140 http://mirror.einval.org/debian sid/main amd64 libfastahack-dev amd64 1.0.0+dfsg-9 [26.9 kB] Get:141 http://mirror.einval.org/debian sid/main amd64 libfml0 amd64 0.1+git20190320.b499514-1+b1 [71.4 kB] Get:142 http://mirror.einval.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:143 http://mirror.einval.org/debian sid/main amd64 libfml-dev amd64 0.1+git20190320.b499514-1+b1 [82.9 kB] Get:144 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 11.2.0-10 [106 kB] Get:145 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 11.2.0-10 [26.0 kB] Get:146 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 11.2.0-10 [886 kB] Get:147 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.2.0-10 [2019 kB] Get:148 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 11.2.0-10 [835 kB] Get:149 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 11.2.0-10 [145 kB] Get:150 http://mirror.einval.org/debian sid/main amd64 libgcc-11-dev amd64 11.2.0-10 [2357 kB] Get:151 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.70.0-1+b1 [1311 kB] Get:152 http://mirror.einval.org/debian sid/main amd64 libhtscodecs2 amd64 1.1.1-3+b1 [50.1 kB] Get:153 http://mirror.einval.org/debian sid/main amd64 liblzma5 amd64 5.2.5-2 [168 kB] Get:154 http://mirror.einval.org/debian sid/main amd64 libhts3 amd64 1.13+ds-2 [395 kB] Get:155 http://mirror.einval.org/debian sid/main amd64 liblzma-dev amd64 5.2.5-2 [229 kB] Get:156 http://mirror.einval.org/debian sid/main amd64 libhts-dev amd64 1.13+ds-2 [4086 kB] Get:157 http://mirror.einval.org/debian sid/main amd64 libjsoncpp24 amd64 1.9.4-5 [78.8 kB] Get:158 http://mirror.einval.org/debian sid/main amd64 libjsoncpp-dev amd64 1.9.4-5 [25.7 kB] Get:159 http://mirror.einval.org/debian sid/main amd64 libtinfo6 amd64 6.2+20210905-1 [348 kB] Get:160 http://mirror.einval.org/debian sid/main amd64 libncurses6 amd64 6.2+20210905-1 [102 kB] Get:161 http://mirror.einval.org/debian sid/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:162 http://mirror.einval.org/debian sid/main amd64 libseqlib2 amd64 1.2.0+dfsg-6 [163 kB] Get:163 http://mirror.einval.org/debian sid/main amd64 libssw-dev amd64 1.1-13 [22.4 kB] Get:164 http://mirror.einval.org/debian sid/main amd64 libseqlib-dev amd64 1.2.0+dfsg-6 [211 kB] Get:165 http://mirror.einval.org/debian sid/main amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-12 [35.5 kB] Get:166 http://mirror.einval.org/debian sid/main amd64 libsmithwaterman-dev amd64 0.0+git20160702.2610e25-12 [39.5 kB] Get:167 http://mirror.einval.org/debian sid/main amd64 libstdc++-11-dev amd64 11.2.0-10 [1952 kB] Get:168 http://mirror.einval.org/debian sid/main amd64 libtabixpp0 amd64 1.1.0-4 [9200 B] Get:169 http://mirror.einval.org/debian sid/main amd64 libtabixpp-dev amd64 1.1.0-4 [8288 B] Get:170 http://mirror.einval.org/debian sid/main amd64 libvcflib1 amd64 1.0.2+dfsg-3 [152 kB] Get:171 http://mirror.einval.org/debian sid/main amd64 libvcflib-dev amd64 1.0.2+dfsg-3 [85.0 kB] Get:172 http://mirror.einval.org/debian sid/main arm64 ninja-build arm64 1.10.1-1 [107 kB] Get:173 http://mirror.einval.org/debian sid/main arm64 python3-pkg-resources all 58.2.0-1 [192 kB] Get:174 http://mirror.einval.org/debian sid/main arm64 python3-lib2to3 all 3.9.7-1 [79.4 kB] Get:175 http://mirror.einval.org/debian sid/main arm64 python3-distutils all 3.9.7-1 [146 kB] Get:176 http://mirror.einval.org/debian sid/main arm64 meson all 0.59.2-1 [496 kB] Get:177 http://mirror.einval.org/debian sid/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get:178 http://mirror.einval.org/debian sid/main amd64 samtools amd64 1.13-2 [568 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 236 MB in 3s (80.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12314 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.37.2-4_arm64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-7_arm64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../5-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../6-libpython3.9-minimal_3.9.7-4_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.7-4) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../7-libexpat1_2.4.1-2+b1_arm64.deb ... Unpacking libexpat1:arm64 (2.4.1-2+b1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../8-python3.9-minimal_3.9.7-4_arm64.deb ... Unpacking python3.9-minimal (3.9.7-4) ... Setting up libpython3.9-minimal:arm64 (3.9.7-4) ... Setting up libexpat1:arm64 (2.4.1-2+b1) ... Setting up python3.9-minimal (3.9.7-4) ... Selecting previously unselected package python3-minimal. (Reading database ... 13197 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../2-libmpdec3_2.5.1-2_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../3-libncursesw6_6.2+20210905-1_arm64.deb ... Unpacking libncursesw6:arm64 (6.2+20210905-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../5-libreadline8_8.1-2_arm64.deb ... Unpacking libreadline8:arm64 (8.1-2) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../6-libsqlite3-0_3.36.0-2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.36.0-2) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.7-4_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.7-4) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.7-4_arm64.deb ... Unpacking python3.9 (3.9.7-4) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... 13636 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package gcc-11-base:amd64. Preparing to unpack .../001-gcc-11-base_11.2.0-10_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-10) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../004-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../008-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../009-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../010-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../011-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../012-automake_1%3a1.16.5-1_all.deb ... Unpacking automake (1:1.16.5-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../013-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package bc. Preparing to unpack .../014-bc_1.07.1-3_arm64.deb ... Unpacking bc (1.07.1-3) ... Selecting previously unselected package gcc-11-x86-64-linux-gnu-base:arm64. Preparing to unpack .../015-gcc-11-x86-64-linux-gnu-base_11.2.0-9cross1_arm64.deb ... Unpacking gcc-11-x86-64-linux-gnu-base:arm64 (11.2.0-9cross1) ... Selecting previously unselected package cpp-11-x86-64-linux-gnu. Preparing to unpack .../016-cpp-11-x86-64-linux-gnu_11.2.0-9cross1_arm64.deb ... Unpacking cpp-11-x86-64-linux-gnu (11.2.0-9cross1) ... Selecting previously unselected package cpp-x86-64-linux-gnu. Preparing to unpack .../017-cpp-x86-64-linux-gnu_4%3a11.2.0-2_arm64.deb ... Unpacking cpp-x86-64-linux-gnu (4:11.2.0-2) ... Selecting previously unselected package cross-config. Preparing to unpack .../018-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../019-binutils-x86-64-linux-gnu_2.37-7_arm64.deb ... Unpacking binutils-x86-64-linux-gnu (2.37-7) ... Selecting previously unselected package gcc-11-cross-base. Preparing to unpack .../020-gcc-11-cross-base_11.2.0-9cross1_all.deb ... Unpacking gcc-11-cross-base (11.2.0-9cross1) ... 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Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-11-dev-amd64-cross (11.2.0-9cross1) ... Setting up python3.9 (3.9.7-4) ... Setting up g++-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up gcc-x86-64-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.5.2) ... Setting up python3 (3.9.2-3) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-x86-64-linux-gnu (4:11.2.0-2) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up python3-pkg-resources (58.2.0-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up meson (0.59.2-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... 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Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-10 libstdc++6-amd64-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 bc_1.07.1-3 binutils_2.37-7 binutils-aarch64-linux-gnu_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:11.2.0-2 cpp-11_11.2.0-10 cpp-11-x86-64-linux-gnu_11.2.0-9cross1 cpp-x86-64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210120+802ebd4-2 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 fakeroot_1.26-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 g++-11-x86-64-linux-gnu_11.2.0-9cross1 g++-x86-64-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-11-cross-base_11.2.0-9cross1 gcc-11-x86-64-linux-gnu_11.2.0-9cross1 gcc-11-x86-64-linux-gnu-base_11.2.0-9cross1 gcc-x86-64-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10 libasan6-amd64-cross_11.2.0-9cross1 libatomic1_11.2.0-10 libatomic1-amd64-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbamtools-dev_2.5.1+dfsg-9 libbamtools2.5.1_2.5.1+dfsg-9 libbinutils_2.37-7 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b2 libbwa-dev_0.7.17-6+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-amd64-cross_2.32-1cross4 libc6-dev_2.32-4 libc6-dev-amd64-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libcurl3-gnutls_7.74.0-1.3+b1 libcurl4-gnutls-dev_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.8-1 libdeflate0_1.8-1 libdisorder-dev_0.0.2+git20130809.8062ee1-3 libdisorder0_0.0.2+git20130809.8062ee1-3 libdpkg-perl_1.20.9 libelf1_0.185-2 libexpat1_2.4.1-2+b1 libfakeroot_1.26-1 libfastahack-dev_1.0.0+dfsg-9 libfastahack0_1.0.0+dfsg-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-2 libfile-which-perl_1.23-1 libfml-dev_0.1+git20190320.b499514-1+b1 libfml0_0.1+git20190320.b499514-1+b1 libgcc-11-dev_11.2.0-10 libgcc-11-dev-amd64-cross_11.2.0-9cross1 libgcc-s1_11.2.0-10 libgcc-s1-amd64-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libglib2.0-0_2.70.0-1+b1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgomp1-amd64-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3+b1 libhwasan0_11.2.0-10 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.24-2 libitm1_11.2.0-10 libitm1-amd64-cross_11.2.0-9cross1 libjsoncpp-dev_1.9.4-5 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-10 liblsan0-amd64-cross_11.2.0-9cross1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.7-4 libpython3.9-stdlib_3.9.7-4 libquadmath0_11.2.0-10 libquadmath0-amd64-cross_11.2.0-9cross1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libseqlib-dev_1.2.0+dfsg-6 libseqlib2_1.2.0+dfsg-6 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsmithwaterman-dev_0.0+git20160702.2610e25-12 libsmithwaterman0_0.0+git20160702.2610e25-12 libsqlite3-0_3.36.0-2 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-10 libstdc++6-amd64-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtabixpp-dev_1.1.0-4 libtabixpp0_1.1.0-4 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-10 libtsan0-amd64-cross_11.2.0-9cross1 libubsan1_11.2.0-10 libubsan1-amd64-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libvcflib-dev_1.0.2+dfsg-3 libvcflib1_1.0.2+dfsg-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 linux-libc-dev-amd64-cross_5.10.46-4cross4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 meson_0.59.2-1 mount_2.37.2-4 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 ninja-build_1.10.1-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3-pkg-resources_58.2.0-1 python3.9_3.9.7-4 python3.9-minimal_3.9.7-4 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 samtools_1.13-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021d-1 ucf_3.0043 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.5-3 Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel , libvcflib-tools Package-List: freebayes deb science optional arch=any Checksums-Sha1: 7e677dd88ba1721ec5a397cbd72015fe530861af 2890213 freebayes_1.3.5.orig.tar.gz 948b434123f7ce7ddcd028db7f78eab261c8cab1 11356 freebayes_1.3.5-3.debian.tar.xz Checksums-Sha256: af195a8c54b742d01af5a7e1fd1781a89290d726b310216c83e78c650d7aee49 2890213 freebayes_1.3.5.orig.tar.gz 8c8d06479b35e808cc8ad8d606959b1ff9156c7813e626a1a73cf2a1dc656046 11356 freebayes_1.3.5-3.debian.tar.xz Files: 0474f30e2cc128973cac9d12ea726d50 2890213 freebayes_1.3.5.orig.tar.gz 5f8bb4c2d82561a94a5fe827c31a05cf 11356 freebayes_1.3.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFek34RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEL8Q//boYo8I9zX88InZaqkFefO6lqyFbkksZ1 9T8KtJe1bfnoJjDpzC0ublO9DlqN/V6lMUzGcsRnlHEzyGx8jfGU9OHsstZhNMvM 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signature on ./freebayes_1.3.5-3.dsc dpkg-source: info: extracting freebayes in /<> dpkg-source: info: unpacking freebayes_1.3.5.orig.tar.gz dpkg-source: info: unpacking freebayes_1.3.5-3.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-4cedc912-8223-444f-a374-68754273f4b9 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package freebayes dpkg-buildpackage: info: source version 1.3.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=meson --builddir=build dh_auto_clean -O--buildsystem=meson -O--builddir=build dh_autoreconf_clean -O--buildsystem=meson -O--builddir=build dh_clean -O--buildsystem=meson -O--builddir=build debian/rules binary-arch dh binary-arch --buildsystem=meson --builddir=build dh_update_autotools_config -a -O--buildsystem=meson -O--builddir=build dh_autoreconf -a -O--buildsystem=meson -O--builddir=build dh_auto_configure -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu --cross-file /<>/debian/.debhelper/generated/_source/meson-cross-file.conf DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 0.59.2 Source dir: /<> Build dir: /<>/build Build type: cross build Project name: freebayes Project version: 1.3.4 C compiler for the host machine: /usr/bin/x86_64-linux-gnu-gcc (gcc 11.2.0 "x86_64-linux-gnu-gcc (Debian 11.2.0-9) 11.2.0") C linker for the host machine: /usr/bin/x86_64-linux-gnu-gcc ld.bfd 2.37 C++ compiler for the host machine: /usr/bin/x86_64-linux-gnu-g++ (gcc 11.2.0 "x86_64-linux-gnu-g++ (Debian 11.2.0-9) 11.2.0") C++ linker for the host machine: /usr/bin/x86_64-linux-gnu-g++ ld.bfd 2.37 C compiler for the build machine: cc (gcc 11.2.0 "cc (Debian 11.2.0-10) 11.2.0") C linker for the build machine: cc ld.bfd 2.37 C++ compiler for the build machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-10) 11.2.0") C++ linker for the build machine: c++ ld.bfd 2.37 Build machine cpu family: aarch64 Build machine cpu: aarch64 Host machine cpu family: x86_64 Host machine cpu: amd64 Target machine cpu family: x86_64 Target machine cpu: amd64 Found pkg-config: /usr/bin/x86_64-linux-gnu-pkg-config (0.29.2) Run-time dependency zlib found: YES 1.2.11 Run-time dependency liblzma found: YES 5.2.5 Run-time dependency threads found: YES Run-time dependency htslib found: YES 1.13+ds Library tabixpp found: YES Run-time dependency libvcflib found: YES 1.0 Run-time dependency libseqlib found: YES 1.0 Compiler for C++ supports arguments -fpermissive: YES Compiler for C++ supports arguments -Wno-reorder: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Program prove found: YES (/usr/bin/prove) Build targets in project: 3 Option optimization is: 0 [default: 3] Found ninja-1.10.1 at /usr/bin/ninja dh_auto_build -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 ninja -j1 -v [1/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Allele.cpp.o -MF libfreebayes_common.a.p/src_Allele.cpp.o.d -o libfreebayes_common.a.p/src_Allele.cpp.o -c ../src/Allele.cpp ../src/Allele.cpp: In member function ‘const short int Allele::currentQuality() const’: ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_GENOTYPE’ not handled in switch [-Wswitch] 160 | switch (this->type) { | ^ ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_NULL’ not handled in switch [-Wswitch] [2/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp [3/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_BedReader.cpp.o -MF libfreebayes_common.a.p/src_BedReader.cpp.o.d -o libfreebayes_common.a.p/src_BedReader.cpp.o -c ../src/BedReader.cpp [4/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Bias.cpp.o -MF libfreebayes_common.a.p/src_Bias.cpp.o.d -o libfreebayes_common.a.p/src_Bias.cpp.o -c ../src/Bias.cpp [5/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_CNV.cpp.o -MF libfreebayes_common.a.p/src_CNV.cpp.o.d -o libfreebayes_common.a.p/src_CNV.cpp.o -c ../src/CNV.cpp [6/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Contamination.cpp.o -MF libfreebayes_common.a.p/src_Contamination.cpp.o.d -o libfreebayes_common.a.p/src_Contamination.cpp.o -c ../src/Contamination.cpp [7/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_DataLikelihood.cpp.o -MF libfreebayes_common.a.p/src_DataLikelihood.cpp.o.d -o libfreebayes_common.a.p/src_DataLikelihood.cpp.o -c ../src/DataLikelihood.cpp [8/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Dirichlet.cpp.o -MF libfreebayes_common.a.p/src_Dirichlet.cpp.o.d -o libfreebayes_common.a.p/src_Dirichlet.cpp.o -c ../src/Dirichlet.cpp [9/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Ewens.cpp.o -MF libfreebayes_common.a.p/src_Ewens.cpp.o.d -o libfreebayes_common.a.p/src_Ewens.cpp.o -c ../src/Ewens.cpp [10/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_FBFasta.cpp.o -MF libfreebayes_common.a.p/src_FBFasta.cpp.o.d -o libfreebayes_common.a.p/src_FBFasta.cpp.o -c ../src/FBFasta.cpp [11/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Genotype.cpp.o -MF libfreebayes_common.a.p/src_Genotype.cpp.o.d -o libfreebayes_common.a.p/src_Genotype.cpp.o -c ../src/Genotype.cpp [12/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_IndelAllele.cpp.o -MF libfreebayes_common.a.p/src_IndelAllele.cpp.o.d -o libfreebayes_common.a.p/src_IndelAllele.cpp.o -c ../src/IndelAllele.cpp [13/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_LeftAlign.cpp.o -MF libfreebayes_common.a.p/src_LeftAlign.cpp.o.d -o libfreebayes_common.a.p/src_LeftAlign.cpp.o -c ../src/LeftAlign.cpp [14/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Marginals.cpp.o -MF libfreebayes_common.a.p/src_Marginals.cpp.o.d -o libfreebayes_common.a.p/src_Marginals.cpp.o -c ../src/Marginals.cpp [15/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Multinomial.cpp.o -MF libfreebayes_common.a.p/src_Multinomial.cpp.o.d -o libfreebayes_common.a.p/src_Multinomial.cpp.o -c ../src/Multinomial.cpp [16/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_NonCall.cpp.o -MF libfreebayes_common.a.p/src_NonCall.cpp.o.d -o libfreebayes_common.a.p/src_NonCall.cpp.o -c ../src/NonCall.cpp [17/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Parameters.cpp.o -MF libfreebayes_common.a.p/src_Parameters.cpp.o.d -o libfreebayes_common.a.p/src_Parameters.cpp.o -c ../src/Parameters.cpp [18/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Result.cpp.o -MF libfreebayes_common.a.p/src_Result.cpp.o.d -o libfreebayes_common.a.p/src_Result.cpp.o -c ../src/Result.cpp [19/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_ResultData.cpp.o -MF libfreebayes_common.a.p/src_ResultData.cpp.o.d -o libfreebayes_common.a.p/src_ResultData.cpp.o -c ../src/ResultData.cpp [20/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Sample.cpp.o -MF libfreebayes_common.a.p/src_Sample.cpp.o.d -o libfreebayes_common.a.p/src_Sample.cpp.o -c ../src/Sample.cpp [21/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -MF libfreebayes_common.a.p/src_SegfaultHandler.cpp.o.d -o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -c ../src/SegfaultHandler.cpp [22/27] /usr/bin/x86_64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Utility.cpp.o -MF libfreebayes_common.a.p/src_Utility.cpp.o.d -o libfreebayes_common.a.p/src_Utility.cpp.o -c ../src/Utility.cpp In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with long unsigned int value_size = 1]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<4, 1>::mantissa.ttmath::UInt<1>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[3]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[2]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with long unsigned int value_size = 1]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<4, 1>::mantissa.ttmath::UInt<1>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[3]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[2]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with long unsigned int argument_size = 4; long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with long unsigned int value_size = 4]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with long unsigned int exp = 4; long unsigned int man = 1]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<4, 1>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathint.h:652:61: warning: ‘result.ttmath::Big<4, 1>::exponent.ttmath::Int<4>::.ttmath::UInt<4>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ [23/27] /usr/bin/x86_64-linux-gnu-g++ -Ibamleftalign.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ bamleftalign.p/src_bamleftalign.cpp.o -MF bamleftalign.p/src_bamleftalign.cpp.o.d -o bamleftalign.p/src_bamleftalign.cpp.o -c ../src/bamleftalign.cpp [24/27] rm -f libfreebayes_common.a && /usr/bin/x86_64-linux-gnu-ar csrD libfreebayes_common.a libfreebayes_common.a.p/src_Allele.cpp.o libfreebayes_common.a.p/src_AlleleParser.cpp.o libfreebayes_common.a.p/src_BedReader.cpp.o libfreebayes_common.a.p/src_Bias.cpp.o libfreebayes_common.a.p/src_CNV.cpp.o libfreebayes_common.a.p/src_Contamination.cpp.o libfreebayes_common.a.p/src_DataLikelihood.cpp.o libfreebayes_common.a.p/src_Dirichlet.cpp.o libfreebayes_common.a.p/src_Ewens.cpp.o libfreebayes_common.a.p/src_FBFasta.cpp.o libfreebayes_common.a.p/src_Genotype.cpp.o libfreebayes_common.a.p/src_IndelAllele.cpp.o libfreebayes_common.a.p/src_LeftAlign.cpp.o libfreebayes_common.a.p/src_Marginals.cpp.o libfreebayes_common.a.p/src_Multinomial.cpp.o libfreebayes_common.a.p/src_NonCall.cpp.o libfreebayes_common.a.p/src_Parameters.cpp.o libfreebayes_common.a.p/src_Result.cpp.o libfreebayes_common.a.p/src_ResultData.cpp.o libfreebayes_common.a.p/src_Sample.cpp.o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o libfreebayes_common.a.p/src_Utility.cpp.o [25/27] /usr/bin/x86_64-linux-gnu-g++ -Ifreebayes.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ freebayes.p/src_freebayes.cpp.o -MF freebayes.p/src_freebayes.cpp.o.d -o freebayes.p/src_freebayes.cpp.o -c ../src/freebayes.cpp [26/27] /usr/bin/x86_64-linux-gnu-g++ -o freebayes freebayes.p/src_freebayes.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/liblzma.so -pthread /usr/lib/x86_64-linux-gnu/libhts.so -ltabixpp /usr/lib/x86_64-linux-gnu/libvcflib.so /usr/lib/x86_64-linux-gnu/libsmithwaterman.so /usr/lib/x86_64-linux-gnu/libdisorder.so /usr/lib/x86_64-linux-gnu/libfastahack.so /usr/lib/x86_64-linux-gnu/libseqlib.so /usr/lib/libbwa.a -ltabixpp -Wl,--end-group [27/27] /usr/bin/x86_64-linux-gnu-g++ -o bamleftalign bamleftalign.p/src_bamleftalign.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/liblzma.so -pthread /usr/lib/x86_64-linux-gnu/libhts.so /usr/lib/x86_64-linux-gnu/libvcflib.so /usr/lib/x86_64-linux-gnu/libsmithwaterman.so /usr/lib/x86_64-linux-gnu/libdisorder.so /usr/lib/x86_64-linux-gnu/libfastahack.so /usr/lib/x86_64-linux-gnu/libseqlib.so /usr/lib/libbwa.a -ltabixpp -Wl,--end-group create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson -O--builddir=build dh_prep -a -O--buildsystem=meson -O--builddir=build dh_auto_install --destdir=debian/freebayes/ -a -O--buildsystem=meson -O--builddir=build cd build && DESTDIR=/<>/debian/freebayes LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing freebayes to /<>/debian/freebayes/usr/bin Installing bamleftalign to /<>/debian/freebayes/usr/bin dh_installdocs -a -O--buildsystem=meson -O--builddir=build dh_installchangelogs -a -O--buildsystem=meson -O--builddir=build dh_installexamples -a -O--buildsystem=meson -O--builddir=build dh_installsystemduser -a -O--buildsystem=meson -O--builddir=build dh_perl -a -O--buildsystem=meson -O--builddir=build dh_link -a -O--buildsystem=meson -O--builddir=build dh_strip_nondeterminism -a -O--buildsystem=meson -O--builddir=build dh_compress -a -O--buildsystem=meson -O--builddir=build dh_fixperms -a -O--buildsystem=meson -O--builddir=build dh_missing -a -O--buildsystem=meson -O--builddir=build dh_dwz -a -O--buildsystem=meson -O--builddir=build dh_strip -a -O--buildsystem=meson -O--builddir=build dh_makeshlibs -a -O--buildsystem=meson -O--builddir=build dh_shlibdeps -a -O--buildsystem=meson -O--builddir=build dh_installdeb -a -O--buildsystem=meson -O--builddir=build dh_gencontrol -a -O--buildsystem=meson -O--builddir=build dh_md5sums -a -O--buildsystem=meson -O--builddir=build dh_builddeb -a -O--buildsystem=meson -O--builddir=build dpkg-deb: building package 'freebayes' in '../freebayes_1.3.5-3_amd64.deb'. dpkg-deb: building package 'freebayes-dbgsym' in '../freebayes-dbgsym_1.3.5-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../freebayes_1.3.5-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-24T12:40:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ freebayes_1.3.5-3_amd64.changes: -------------------------------- Format: 1.8 Date: Thu, 07 Oct 2021 08:09:27 +0200 Source: freebayes Binary: freebayes freebayes-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 1.3.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: freebayes - Bayesian haplotype-based polymorphism discovery and genotyping Changes: freebayes (1.3.5-3) unstable; urgency=medium . * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on libvcflib-tools. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: freebayes Binary: freebayes freebayes-dbgsym Architecture: amd64 Version: 1.3.5-3 Checksums-Md5: 96bfeb11352c4daaa1ad47fb49ef2c6a 6655628 freebayes-dbgsym_1.3.5-3_amd64.deb f2d48057ed049a4aaa03b9a6828b87c5 1455204 freebayes_1.3.5-3_amd64.deb Checksums-Sha1: 022a4fd7dd8255b191ede828e299353e059d74b5 6655628 freebayes-dbgsym_1.3.5-3_amd64.deb a9c880a4d6ca9eea0963a4b7ca22217199bdf9f1 1455204 freebayes_1.3.5-3_amd64.deb Checksums-Sha256: bc1a720175117dc2cad26d1a1ca53340132f9e77a5cdc3ba2ec6991bf70e2937 6655628 freebayes-dbgsym_1.3.5-3_amd64.deb a39e984034d0d88325cf7448025a3e9b0f3e2e4915fb534a6526cbd322e756a1 1455204 freebayes_1.3.5-3_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Sun, 24 Oct 2021 12:40:32 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), 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6.2+20210905-1), ninja-build (= 1.10.1-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.2-3), python3-distutils (= 3.9.7-1), python3-lib2to3 (= 3.9.7-1), python3-minimal (= 3.9.2-3), python3-pkg-resources (= 58.2.0-1), python3.9 (= 3.9.7-4), python3.9-minimal (= 3.9.7-4), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-4), samtools (= 1.13-2), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), tzdata (= 2021d-1), util-linux (= 2.37.2-4), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1633586967" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ freebayes-dbgsym_1.3.5-3_amd64.deb ---------------------------------- new Debian package, version 2.0. size 6655628 bytes: control archive=644 bytes. 420 bytes, 12 lines control 298 bytes, 3 lines md5sums Package: freebayes-dbgsym Source: freebayes Version: 1.3.5-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 6731 Depends: freebayes (= 1.3.5-3) Section: debug Priority: optional Description: debug symbols for freebayes Build-Ids: 015456b937e721fc13e3499796389a036bf7f9e4 63a849ae869ee90cb17847ea14766f76ba21cc7a drwxr-xr-x root/root 0 2021-10-07 06:09 ./ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/.build-id/01/ 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Maintainer: Debian Med Packaging Team Installed-Size: 3885 Depends: libc6 (>= 2.32), libgcc-s1 (>= 3.0), libseqlib2 (>= 1.2.0), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.2+dfsg), zlib1g (>= 1:1.1.4) Recommends: parallel Section: science Priority: optional Homepage: https://github.com/ekg/freebayes Description: Bayesian haplotype-based polymorphism discovery and genotyping FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. drwxr-xr-x root/root 0 2021-10-07 06:09 ./ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/bin/ -rwxr-xr-x root/root 1167360 2021-10-07 06:09 ./usr/bin/bamleftalign -rwxr-xr-x root/root 1904496 2021-10-07 06:09 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./usr/share/doc/freebayes/examples/tiny/q.regions -rw-r--r-- root/root 4168 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.vcf.gz -rw-r--r-- root/root 102 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.vcf.gz.tbi -rw-r--r-- root/root 2378 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz -rw-r--r-- root/root 91 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz.tbi -rw-r--r-- root/root 924 2021-10-07 06:09 ./usr/share/doc/freebayes/run-unit-test.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [639 B] Get:5 copy:/<>/apt_archive ./ Packages [709 B] Fetched 2311 B in 0s (54.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 6663 kB of archives. After this operation, 20.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-1 [49.3 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.27-2 [540 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.27-2 [883 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40 [69.4 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b2 [15.8 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-1+b3 [25.5 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:16 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-1+b3 [44.2 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.25-1 [19.5 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:20 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b7 [36.9 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b1 [15.3 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.27-1 [17.1 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b1 [25.3 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:29 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.27-1 [126 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-2 [36.8 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.01-2 [34.3 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b2 [25.8 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b3 [26.7 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:46 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:47 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:53 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-2 [60.4 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.008-1+b1 [11.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1 [46.1 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:79 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.8-1+b1 [195 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-4 [84.6 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 lintian all 2.110.0 [1338 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6663 kB in 0s (36.8 MB/s) Selecting previously unselected package diffstat. (Reading database ... 20476 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../01-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_arm64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.27-2_arm64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.40_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../06-libb-hooks-op-check-perl_0.22-1+b3_arm64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../07-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../08-libdevel-callchecker-perl_0.008-1+b2_arm64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../09-libparams-classify-perl_0.015-1+b3_arm64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../10-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. 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Unpacking libconfig-tiny-perl (2.27-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../22-libparams-util-perl_1.102-1+b1_arm64.deb ... Unpacking libparams-util-perl (1.102-1+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../23-libsub-install-perl_0.928-1.1_all.deb ... Unpacking libsub-install-perl (0.928-1.1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../24-libdata-optlist-perl_0.112-1_all.deb ... Unpacking libdata-optlist-perl (0.112-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../25-libsub-exporter-perl_0.988-1_all.deb ... Unpacking libsub-exporter-perl (0.988-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../26-libconst-fast-perl_0.014-1.1_all.deb ... Unpacking libconst-fast-perl (0.014-1.1) ... Selecting previously unselected package libcpanel-json-xs-perl:arm64. 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Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.110.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.32-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 150924 Build-Time: 347 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 76 Job: freebayes_1.3.5-3 Lintian: pass Machine Architecture: arm64 Package: freebayes Package-Time: 460 Source-Version: 1.3.5-3 Space: 150924 Status: successful Version: 1.3.5-3 -------------------------------------------------------------------------------- Finished at 2021-10-24T12:40:33Z Build needed 00:07:40, 150924k disk space