sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | freebayes 1.3.5-3 (arm64) Wed, 13 Oct 2021 04:59:10 +0000 | +==============================================================================+ Package: freebayes Version: 1.3.5-3 Source Version: 1.3.5-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-c290a099-81c7-4a04-89b9-a7ed1b2a4260' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-xYfujn/resolver-PwwBHU' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-13-0202.45-F-2021-10-12-0801.41.pdiff [66.2 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-13-0202.45-F-2021-10-12-0801.41.pdiff [66.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-13-0202.45-F-2021-10-12-0801.41.pdiff [77.1 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-13-0202.45-F-2021-10-12-0801.41.pdiff [77.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8651 kB] Fetched 9087 kB in 4s (2457 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libsystemd0 libudev1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 566 kB of archives. After this operation, 82.9 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libsystemd0 amd64 249.5-1 [393 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libudev1 amd64 249.5-1 [173 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 566 kB in 0s (9086 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10545 files and directories currently installed.) Preparing to unpack .../libsystemd0_249.5-1_amd64.deb ... Unpacking libsystemd0:amd64 (249.5-1) over (247.9-4) ... Setting up libsystemd0:amd64 (249.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10545 files and directories currently installed.) Preparing to unpack .../libudev1_249.5-1_amd64.deb ... Unpacking libudev1:amd64 (249.5-1) over (247.9-4) ... Setting up libudev1:amd64 (249.5-1) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2904 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-3 (dsc) [2221 B] Get:2 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-3 (tar) [2890 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-3 (diff) [11.4 kB] Fetched 2904 kB in 0s (68.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/freebayes-xYfujn/freebayes-1.3.5' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-xYfujn' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [507 B] Get:5 copy:/<>/apt_archive ./ Packages [576 B] Fetched 2040 B in 0s (78.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-11-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-aarch64-linux-gnu gcc-11-aarch64-linux-gnu-base gcc-11-base:arm64 gcc-11-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.1:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libdpkg-perl libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-11-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0-arm64-cross libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp24:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6:arm64 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libperl5.32 libpipeline1 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsigsegv2 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl1.1:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-11-dev libstdc++-11-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libvcflib-dev:arm64 libvcflib1:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl perl-modules-5.32 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto samtools:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 glibc-doc manpages-dev:arm64 libcurl4-doc:arm64 libgnutls28-dev:arm64 libidn11-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 gnupg git bzr gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 libstdc++-11-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support cwltool:arm64 Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:arm64 libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:arm64 libldap-common:arm64 libgpm2:arm64 publicsuffix:arm64 ca-certificates libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-11-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-aarch64-linux-gnu gcc-11-aarch64-linux-gnu-base gcc-11-base:arm64 gcc-11-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.1:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libdpkg-perl libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-11-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0-arm64-cross libicu67 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp24:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6:arm64 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libperl5.32 libpipeline1 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsigsegv2 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl1.1:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-11-dev libstdc++-11-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libvcflib-dev:arm64 libvcflib1:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl perl-modules-5.32 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto samtools:arm64 sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 189 newly installed, 0 to remove and 0 not upgraded. Need to get 309 MB of archives. After this operation, 1125 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1000 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-3 [143 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.7-4 [804 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.1-2+b1 [104 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.7-4 [1963 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 4.0.0 [30.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.7-4 [1688 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.7-4 [480 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-11-base arm64 11.2.0-9 [205 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.4.0-3 [200 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-2 [819 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 bc amd64 1.07.1-3+b1 [110 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.37-7 [2903 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-9 [1949 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-9 [49.7 MB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-aarch64-linux-gnu-base amd64 11.2.0-9cross1 [206 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-aarch64-linux-gnu amd64 11.2.0-9cross1 [51.5 MB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:11.2.0-2 [17.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.32-1cross4 [1236 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 11.2.0-9cross1 [34.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 11.2.0-9cross1 [93.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 11.2.0-9cross1 [23.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 11.2.0-9cross1 [9248 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 11.2.0-9cross1 [1943 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 11.2.0-9cross1 [842 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 11.2.0-9cross1 [1948 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 11.2.0-9cross1 [481 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 11.2.0-9cross1 [809 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libhwasan0-arm64-cross all 11.2.0-9cross1 [903 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-arm64-cross all 11.2.0-9cross1 [930 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-aarch64-linux-gnu amd64 11.2.0-9cross1 [58.4 MB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:11.2.0-2 [1456 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.10.46-4cross4 [1447 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.32-1cross4 [1937 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-arm64-cross all 11.2.0-9cross1 [1906 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-aarch64-linux-gnu amd64 11.2.0-9cross1 [55.7 MB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:11.2.0-2 [1176 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.2 [1056 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 11.2.0-9 [34.4 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.32-4 [2464 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.4.0-3 [2676 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 11.2.0-9 [9472 B] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 11.2.0-9 [522 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 libbamtools2.5.1 arm64 2.5.1+dfsg-9 [142 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libbamtools-dev arm64 2.5.1+dfsg-9 [197 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libbwa-dev arm64 0.7.17-6+b1 [138 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-4 [46.5 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.14.9-2 [1405 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.25-2 [91.2 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.25-2 [108 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.46.4-1 [75.0 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.18.3-7 [64.9 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.18.3-7 [114 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6.1-2 [15.4 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1l-1 [1389 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.18.3-7 [346 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.18.3-7 [155 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc3 arm64 1.3.2-2 [80.4 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc-dev arm64 1.3.2-2 [193 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.32-4 [1940 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.2.1+dfsg-2 [539 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle8 arm64 3.7.3-1 [277 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed6 arm64 3.7.3-1 [316 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-6 [373 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.3.2-2 [94.6 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libffi8 arm64 3.4.2-3 [23.0 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.24.0-5 [338 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.17.0-2 [53.6 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.7.2-2 [1274 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.8 [622 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.59+dfsg-1 [222 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.10.0-2 [172 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.8-1 [47.9 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate-dev arm64 1.8-1 [44.6 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-3 [4416 B] Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-3 [4488 B] Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libfastahack0 arm64 1.0.0+dfsg-8 [23.8 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libfastahack-dev arm64 1.0.0+dfsg-8 [26.2 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main arm64 libfml0 arm64 0.1+git20190320.b499514-1+b1 [65.9 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 libfml-dev arm64 0.1+git20190320.b499514-1+b1 [79.5 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 11.2.0-9 [95.9 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 11.2.0-9 [23.7 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 11.2.0-9 [843 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 11.2.0-9 [1957 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 11.2.0-9 [810 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.4.0-3 [886 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.70.0-1+b1 [1402 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main arm64 libhtscodecs2 arm64 1.1.1-3+b1 [50.0 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.5-2 [165 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main arm64 libhts3 arm64 1.13+ds-2 [361 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.13+ds-2 [4087 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp24 arm64 1.9.4-5 [72.5 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp-dev arm64 1.9.4-5 [25.7 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main arm64 libtinfo6 arm64 6.2+20210905-1 [342 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main arm64 libncurses6 arm64 6.2+20210905-1 [93.1 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main arm64 libssw0 arm64 1.1-13 [18.5 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main arm64 libseqlib2 arm64 1.2.0+dfsg-6 [148 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main arm64 libssw-dev arm64 1.1-13 [21.9 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main arm64 libseqlib-dev arm64 1.2.0+dfsg-6 [204 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-11 [32.8 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-11 [37.4 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.4.0-3 [1678 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main arm64 libtabixpp0 arm64 1.1.0-4 [8788 B] Get:180 http://debian.oregonstate.edu/debian unstable/main arm64 libtabixpp-dev arm64 1.1.0-4 [8108 B] Get:181 http://debian.oregonstate.edu/debian unstable/main arm64 libvcflib1 arm64 1.0.2+dfsg-2 [133 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main arm64 libvcflib-dev arm64 1.0.2+dfsg-2 [84.9 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 58.2.0-1 [192 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.9.7-1 [79.4 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.9.7-1 [146 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.59.2-1 [496 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main arm64 samtools arm64 1.13-2 [548 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 309 MB in 2s (124 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10545 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-3_amd64.deb ... Unpacking bsdextrautils (2.37.2-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../05-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... 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Unpacking python3.9-minimal (3.9.7-4) ... Setting up libpython3.9-minimal:amd64 (3.9.7-4) ... Setting up libexpat1:amd64 (2.4.1-2+b1) ... Setting up python3.9-minimal (3.9.7-4) ... Selecting previously unselected package python3-minimal. (Reading database ... 13385 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../3-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package libpython3.9-stdlib:amd64. 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Setting up libsqlite3-0:amd64 (3.36.0-2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:arm64 (5.14.9-2) ... Setting up bc (1.07.1-3+b1) ... Setting up gettext-base (0.21-4) ... Setting up binutils-aarch64-linux-gnu (2.37-7) ... Setting up file (1:5.39-3) ... Setting up ninja-build (1.10.1-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libc6-arm64-cross (2.32-1cross4) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libbwa-dev:arm64 (0.7.17-6+b1) ... Setting up linux-libc-dev-arm64-cross (5.10.46-4cross4) ... Setting up cpp-11-aarch64-linux-gnu (11.2.0-9cross1) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... 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Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-11-dev-arm64-cross (11.2.0-9cross1) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up pkg-config (0.29.2-1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up python3-pkg-resources (58.2.0-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gcc-11-aarch64-linux-gnu (11.2.0-9cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up meson (0.59.2-1) ... Setting up libstdc++-11-dev-arm64-cross (11.2.0-9cross1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-11-aarch64-linux-gnu (11.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up gcc-aarch64-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.5.2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:11.2.0-2) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-arm64 (12.9) ... Setting up libgcc-s1:arm64 (11.2.0-9) ... Setting up libc6:arm64 (2.32-4) ... Setting up libffi8:arm64 (3.4.2-3) ... Setting up libtasn1-6:arm64 (4.17.0-2) ... Setting up libbz2-1.0:arm64 (1.0.8-4) ... Setting up libdb5.3:arm64 (5.3.28+dfsg1-0.8) ... Setting up libstdc++6:arm64 (11.2.0-9) ... Setting up liblsan0:arm64 (11.2.0-9) ... Setting up libitm1:arm64 (11.2.0-9) ... Setting up libtinfo6:arm64 (6.2+20210905-1) ... Setting up libtsan0:arm64 (11.2.0-9) ... Setting up libhtscodecs2:arm64 (1.1.1-3+b1) ... Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-3) ... Setting up libkeyutils1:arm64 (1.6.1-2) ... Setting up liblzma5:arm64 (5.2.5-2) ... Setting up libssl1.1:arm64 (1.1.1l-1) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libsmithwaterman0:arm64 (0.0+git20160702.2610e25-11) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libunistring2:arm64 (0.9.10-6) ... Setting up libdeflate0:arm64 (1.8-1) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-2) ... Setting up libcrypt1:arm64 (1:4.4.25-2) ... Setting up libidn2-0:arm64 (2.3.2-2) ... Setting up libcom-err2:arm64 (1.46.4-1) ... Setting up libgomp1:arm64 (11.2.0-9) ... Setting up libfml0:arm64 (0.1+git20190320.b499514-1+b1) ... Setting up libfastahack0:arm64 (1.0.0+dfsg-8) ... Setting up libkrb5support0:arm64 (1.18.3-7) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up libfastahack-dev:arm64 (1.0.0+dfsg-8) ... Setting up libasan5:arm64 (9.4.0-3) ... Setting up libnettle8:arm64 (3.7.3-1) ... Setting up libgmp10:arm64 (2:6.2.1+dfsg-2) ... Setting up libncurses6:arm64 (6.2+20210905-1) ... Setting up libp11-kit0:arm64 (0.24.0-5) ... Setting up libbamtools2.5.1:arm64 (2.5.1+dfsg-9) ... 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Setting up libvcflib-dev:arm64 (1.0.2+dfsg-2) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-9 gcc-11_11.2.0-9 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-9 libstdc++-11-dev-arm64-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-9 libstdc++6-arm64-cross_11.2.0-9cross1 linux-libc-dev_5.14.9-2 Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 bc_1.07.1-3+b1 binutils_2.37-7 binutils-aarch64-linux-gnu_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-3 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-9 cpp-11-aarch64-linux-gnu_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-aarch64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-arm64_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-3 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-9 g++-11-aarch64-linux-gnu_11.2.0-9cross1 g++-aarch64-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-9 gcc-11-aarch64-linux-gnu_11.2.0-9cross1 gcc-11-aarch64-linux-gnu-base_11.2.0-9cross1 gcc-11-base_11.2.0-9 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libstdc++6_11.2.0-9 libstdc++6-arm64-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtabixpp-dev_1.1.0-4 libtabixpp0_1.1.0-4 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-9 libtsan0-arm64-cross_11.2.0-9cross1 libubsan1_11.2.0-9 libubsan1-arm64-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-3 libvcflib-dev_1.0.2+dfsg-2 libvcflib1_1.0.2+dfsg-2 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.9-2 linux-libc-dev-arm64-cross_5.10.46-4cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 meson_0.59.2-1 mount_2.37.2-3 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 ninja-build_1.10.1-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3-pkg-resources_58.2.0-1 python3.9_3.9.7-4 python3.9-minimal_3.9.7-4 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 samtools_1.13-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021c-2 ucf_3.0043 util-linux_2.37.2-3 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.5-3 Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel , libvcflib-tools Package-List: freebayes deb science optional arch=any Checksums-Sha1: 7e677dd88ba1721ec5a397cbd72015fe530861af 2890213 freebayes_1.3.5.orig.tar.gz 948b434123f7ce7ddcd028db7f78eab261c8cab1 11356 freebayes_1.3.5-3.debian.tar.xz Checksums-Sha256: af195a8c54b742d01af5a7e1fd1781a89290d726b310216c83e78c650d7aee49 2890213 freebayes_1.3.5.orig.tar.gz 8c8d06479b35e808cc8ad8d606959b1ff9156c7813e626a1a73cf2a1dc656046 11356 freebayes_1.3.5-3.debian.tar.xz Files: 0474f30e2cc128973cac9d12ea726d50 2890213 freebayes_1.3.5.orig.tar.gz 5f8bb4c2d82561a94a5fe827c31a05cf 11356 freebayes_1.3.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFek34RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEL8Q//boYo8I9zX88InZaqkFefO6lqyFbkksZ1 9T8KtJe1bfnoJjDpzC0ublO9DlqN/V6lMUzGcsRnlHEzyGx8jfGU9OHsstZhNMvM uXh/0P+r1RZGrf/llzKypuoo/B/dZBp9q/lRxetmqJl0gQrEy+N5i4cGdj3igu/w 6DhQAbR56L0xkDMwOARBiC+3dOMkwtMP8KleGgLm+EF/YvH5l+Rdz1FJAT6VAxMy NcmmfprFfzCKBTs80EjQfypXJfJKSbyAQuaytgljl5+/q3hsETl2tmnPMfXXQllq 90GTfKtnBYyZMqzH/Vlw0+RThjsQZt2UhVJQgnw/j+zSmfZw9/orct8TCn1RfUlN 8REVxCMbMN8A/hErnDzHHhiCx8kEdmMYZtmNyh+7amKiSk9g6aRT6xI1N2s3zC4O 2vvn9lBrHiZFFp1fb+ZGB8HGKfRgRIVMV0abFQsDjviJb4W8a5fmU57p0QEuAX5s WfHjoAtpylIIJ+Fr8lNSfVhmmT4eBiNkKDaVTMOvuksfkC7CWlc0b81CmY6zPjEc F+GnR5OQpzzuDQ5F0VLQIVVkASFBodGX0W9l4rRxRDP527IznVsi5WgXHa+06kKS FGbjtc4YctDwOgdPNCgtfwG4WcT0EnY/sO9Bil8Y+qCvWHC/8QR9PaiVvU/eZbo9 F90epd7WOoQ= =3SK/ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.wrtVJZ1n/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 7 06:28:14 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./freebayes_1.3.5-3.dsc dpkg-source: info: extracting freebayes in /<> dpkg-source: info: unpacking freebayes_1.3.5.orig.tar.gz dpkg-source: info: unpacking freebayes_1.3.5-3.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-c290a099-81c7-4a04-89b9-a7ed1b2a4260 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package freebayes dpkg-buildpackage: info: source version 1.3.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=meson --builddir=build dh_auto_clean -O--buildsystem=meson -O--builddir=build dh_autoreconf_clean -O--buildsystem=meson -O--builddir=build dh_clean -O--buildsystem=meson -O--builddir=build debian/rules binary-arch dh binary-arch --buildsystem=meson --builddir=build dh_update_autotools_config -a -O--buildsystem=meson -O--builddir=build dh_autoreconf -a -O--buildsystem=meson -O--builddir=build dh_auto_configure -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --cross-file /<>/debian/.debhelper/generated/_source/meson-cross-file.conf DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 0.59.2 Source dir: /<> Build dir: /<>/build Build type: cross build Project name: freebayes Project version: 1.3.4 C compiler for the host machine: /usr/bin/aarch64-linux-gnu-gcc (gcc 11.2.0 "aarch64-linux-gnu-gcc (Debian 11.2.0-9) 11.2.0") C linker for the host machine: /usr/bin/aarch64-linux-gnu-gcc ld.bfd 2.37 C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 11.2.0 "aarch64-linux-gnu-g++ (Debian 11.2.0-9) 11.2.0") C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.37 C compiler for the build machine: cc (gcc 11.2.0 "cc (Debian 11.2.0-9) 11.2.0") C linker for the build machine: cc ld.bfd 2.37 C++ compiler for the build machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-9) 11.2.0") C++ linker for the build machine: c++ ld.bfd 2.37 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: aarch64 Host machine cpu: arm64 Target machine cpu family: aarch64 Target machine cpu: arm64 Found pkg-config: /usr/bin/aarch64-linux-gnu-pkg-config (0.29.2) Run-time dependency zlib found: YES 1.2.11 Run-time dependency liblzma found: YES 5.2.5 Run-time dependency threads found: YES Run-time dependency htslib found: YES 1.13+ds Library tabixpp found: YES Run-time dependency libvcflib found: YES 1.0 Run-time dependency libseqlib found: YES 1.0 Compiler for C++ supports arguments -fpermissive: YES Compiler for C++ supports arguments -Wno-reorder: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Program prove found: YES (/usr/bin/prove) Build targets in project: 3 Option optimization is: 0 [default: 3] Found ninja-1.10.1 at /usr/bin/ninja dh_auto_build -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 ninja -j1 -v [1/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Allele.cpp.o -MF libfreebayes_common.a.p/src_Allele.cpp.o.d -o libfreebayes_common.a.p/src_Allele.cpp.o -c ../src/Allele.cpp ../src/Allele.cpp: In member function ‘const short int Allele::currentQuality() const’: ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_GENOTYPE’ not handled in switch [-Wswitch] 160 | switch (this->type) { | ^ ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_NULL’ not handled in switch [-Wswitch] [2/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp FAILED: libfreebayes_common.a.p/src_AlleleParser.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp In file included from ../src/BedReader.h:12, from ../src/AlleleParser.h:20, from ../src/AlleleParser.cpp:1: /usr/include/vcflib/../intervaltree/IntervalTree.h: In member function ‘std::pair<_FIter, _FIter> IntervalTree::extentBruitForce() const’: /usr/include/vcflib/../intervaltree/IntervalTree.h:249:49: error: ‘numeric_limits’ is not a member of ‘std’ 249 | std::pair x = {std::numeric_limits::max(), | ^~~~~~~~~~~~~~ /usr/include/vcflib/../intervaltree/IntervalTree.h:249:70: error: expected primary-expression before ‘>’ token 249 | std::pair x = {std::numeric_limits::max(), | ^ /usr/include/vcflib/../intervaltree/IntervalTree.h:249:73: error: ‘::max’ has not been declared; did you mean ‘std::max’? 249 | std::pair x = {std::numeric_limits::max(), | ^~~ | std::max In file included from /usr/aarch64-linux-gnu/include/c++/11/algorithm:62, from ../src/AlleleParser.h:11, from ../src/AlleleParser.cpp:1: /usr/aarch64-linux-gnu/include/c++/11/bits/stl_algo.h:3467:5: note: ‘std::max’ declared here 3467 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ In file included from ../src/BedReader.h:12, from ../src/AlleleParser.h:20, from ../src/AlleleParser.cpp:1: /usr/include/vcflib/../intervaltree/IntervalTree.h:250:61: error: ‘numeric_limits’ is not a member of ‘std’ 250 | std::numeric_limits::min() }; | ^~~~~~~~~~~~~~ /usr/include/vcflib/../intervaltree/IntervalTree.h:250:82: error: expected primary-expression before ‘>’ token 250 | std::numeric_limits::min() }; | ^ /usr/include/vcflib/../intervaltree/IntervalTree.h:250:85: error: ‘::min’ has not been declared; did you mean ‘std::min’? 250 | std::numeric_limits::min() }; | ^~~ | std::min In file included from /usr/aarch64-linux-gnu/include/c++/11/algorithm:62, from ../src/AlleleParser.h:11, from ../src/AlleleParser.cpp:1: /usr/aarch64-linux-gnu/include/c++/11/bits/stl_algo.h:3455:5: note: ‘std::min’ declared here 3455 | min(initializer_list<_Tp> __l, _Compare __comp) | ^~~ In file included from ../src/BedReader.h:12, from ../src/AlleleParser.h:20, from ../src/AlleleParser.cpp:1: /usr/include/vcflib/../intervaltree/IntervalTree.h: In member function ‘std::pair > IntervalTree::is_valid() const’: /usr/include/vcflib/../intervaltree/IntervalTree.h:270:75: error: ‘numeric_limits’ is not a member of ‘std’ 270 | std::pair> result = {true, { std::numeric_limits::max(), | ^~~~~~~~~~~~~~ /usr/include/vcflib/../intervaltree/IntervalTree.h:270:96: error: expected primary-expression before ‘>’ token 270 | std::pair> result = {true, { std::numeric_limits::max(), | ^ /usr/include/vcflib/../intervaltree/IntervalTree.h:270:99: error: ‘::max’ has not been declared; did you mean ‘std::max’? 270 | std::pair> result = {true, { std::numeric_limits::max(), | ^~~ | std::max In file included from /usr/aarch64-linux-gnu/include/c++/11/algorithm:62, from ../src/AlleleParser.h:11, from ../src/AlleleParser.cpp:1: /usr/aarch64-linux-gnu/include/c++/11/bits/stl_algo.h:3467:5: note: ‘std::max’ declared here 3467 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ In file included from ../src/BedReader.h:12, from ../src/AlleleParser.h:20, from ../src/AlleleParser.cpp:1: /usr/include/vcflib/../intervaltree/IntervalTree.h:271:75: error: ‘numeric_limits’ is not a member of ‘std’ 271 | std::numeric_limits::min() }}; | ^~~~~~~~~~~~~~ /usr/include/vcflib/../intervaltree/IntervalTree.h:271:96: error: expected primary-expression before ‘>’ token 271 | std::numeric_limits::min() }}; | ^ /usr/include/vcflib/../intervaltree/IntervalTree.h:271:99: error: ‘::min’ has not been declared; did you mean ‘std::min’? 271 | std::numeric_limits::min() }}; | ^~~ | std::min In file included from /usr/aarch64-linux-gnu/include/c++/11/algorithm:62, from ../src/AlleleParser.h:11, from ../src/AlleleParser.cpp:1: /usr/aarch64-linux-gnu/include/c++/11/bits/stl_algo.h:3455:5: note: ‘std::min’ declared here 3455 | min(initializer_list<_Tp> __l, _Compare __comp) | ^~~ In file included from ../src/BedReader.h:12, from ../src/AlleleParser.h:20, from ../src/AlleleParser.cpp:1: /usr/include/vcflib/../intervaltree/IntervalTree.h: In instantiation of ‘std::pair > IntervalTree::is_valid() const [with Scalar = int; Value = BedTarget*]’: /usr/include/vcflib/../intervaltree/IntervalTree.h:115:13: required from ‘IntervalTree::IntervalTree(IntervalTree::interval_vector&&, std::size_t, std::size_t, std::size_t, Scalar, Scalar) [with Scalar = int; Value = BedTarget*; IntervalTree::interval_vector = std::vector, std::allocator > >; std::size_t = long unsigned int]’ ../src/BedReader.h:68:124: required from here /usr/include/vcflib/../intervaltree/IntervalTree.h:270:52: error: could not convert ‘{true, {, }}’ from ‘’ to ‘std::pair >’ 270 | std::pair> result = {true, { std::numeric_limits::max(), | ^~~~~~ | | | ninja: build stopped: subcommand failed. dh_auto_build: error: cd build && LC_ALL=C.UTF-8 ninja -j1 -v returned exit code 1 make: *** [debian/rules:6: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-10-13T05:00:33Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 10652 Build-Time: 16 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 52 Job: freebayes_1.3.5-3 Machine Architecture: amd64 Package: freebayes Package-Time: 83 Source-Version: 1.3.5-3 Space: 10652 Status: attempted Version: 1.3.5-3 -------------------------------------------------------------------------------- Finished at 2021-10-13T05:00:33Z Build needed 00:01:23, 10652k disk space