sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | freebayes 1.3.5-3 (ppc64el) Thu, 21 Oct 2021 21:39:59 +0000 | +==============================================================================+ Package: freebayes Version: 1.3.5-3 Source Version: 1.3.5-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-17bccf48-0ed7-4ac6-9a61-e52a5c16e624' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-mqITaN/resolver-9av5hZ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-21-2006.11-F-2021-10-21-0801.15.pdiff [43.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-10-21-2006.11-F-2021-10-21-0801.15.pdiff [43.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-21-2006.11-F-2021-10-21-0801.15.pdiff [47.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-10-21-2006.11-F-2021-10-21-0801.15.pdiff [47.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8605 kB] Fetched 8988 kB in 4s (2445 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt cpp-11 gcc-11 gcc-11-base libapt-pkg6.0 libasan6 libatomic1 libcc1-0 libgcc-11-dev libgcc-s1 libgomp1 libitm1 liblsan0 libquadmath0 libstdc++6 libtsan0 libubsan1 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After this operation, 112 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 11.2.0-10 [47.2 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-base amd64 11.2.0-10 [206 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1 amd64 11.2.0-10 [42.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 11.2.0-10 [106 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 11.2.0-10 [26.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 11.2.0-10 [9052 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6 amd64 11.2.0-10 [2050 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 11.2.0-10 [886 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0 amd64 11.2.0-10 [2019 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 11.2.0-10 [835 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 11.2.0-10 [145 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev amd64 11.2.0-10 [2357 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11 amd64 11.2.0-10 [53.3 MB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11 amd64 11.2.0-10 [45.5 MB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 11.2.0-10 [577 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg6.0 amd64 2.3.11 [1026 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 apt amd64 2.3.11 [1506 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 111 MB in 1s (136 MB/s) (Reading database ... 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Setting up libcc1-0:amd64 (11.2.0-10) ... Setting up liblsan0:amd64 (11.2.0-10) ... Setting up libitm1:amd64 (11.2.0-10) ... Setting up libtsan0:amd64 (11.2.0-10) ... Setting up libgcc-11-dev:amd64 (11.2.0-10) ... Setting up gcc-11 (11.2.0-10) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2904 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-3 (dsc) [2221 B] Get:2 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-3 (tar) [2890 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main freebayes 1.3.5-3 (diff) [11.4 kB] Fetched 2904 kB in 0s (82.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/freebayes-mqITaN/freebayes-1.3.5' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-mqITaN' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [510 B] Get:5 copy:/<>/apt_archive ./ Packages [579 B] Fetched 2046 B in 0s (81.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-powerpc64le-linux-gnu bsdextrautils build-essential cpp-11-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-11-cross-base gcc-11-powerpc64le-linux-gnu gcc-11-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbamtools-dev:ppc64el libbamtools2.5.1:ppc64el libbrotli1:ppc64el libbwa-dev:ppc64el libbz2-1.0:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4-gnutls-dev:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el libdisorder-dev:ppc64el libdisorder0:ppc64el libdpkg-perl libelf1 libexpat1 libfastahack-dev:ppc64el libfastahack0:ppc64el libffi8:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:ppc64el libfml0:ppc64el libgcc-11-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libhtscodecs2:ppc64el libicu67 libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libjsoncpp-dev:ppc64el libjsoncpp24:ppc64el libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el libldap-2.4-2:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmpdec3 libncurses6:ppc64el libnettle8:ppc64el libnghttp2-14:ppc64el libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el libperl5.32 libpipeline1 libpsl5:ppc64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross librtmp1:ppc64el libsasl2-2:ppc64el libsasl2-modules-db:ppc64el libseqlib-dev:ppc64el libseqlib2:ppc64el libsigsegv2 libsmithwaterman-dev:ppc64el libsmithwaterman0:ppc64el libsqlite3-0 libssh2-1:ppc64el libssl1.1:ppc64el libssw-dev:ppc64el libssw0:ppc64el libstdc++-11-dev libstdc++-11-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtabixpp-dev:ppc64el libtabixpp0:ppc64el libtasn1-6:ppc64el libtinfo6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libvcflib-dev:ppc64el libvcflib1:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types meson ninja-build perl perl-modules-5.32 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto samtools:ppc64el sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc:ppc64el glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el glibc-doc manpages-dev:ppc64el libcurl4-doc:ppc64el libgnutls28-dev:ppc64el libidn11-dev:ppc64el libkrb5-dev:ppc64el libldap2-dev:ppc64el librtmp-dev:ppc64el libssh2-1-dev:ppc64el gnupg git bzr gnutls-bin:ppc64el krb5-doc:ppc64el krb5-user:ppc64el liblzma-doc:ppc64el libstdc++-11-doc libstdc++-9-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support cwltool:ppc64el Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:ppc64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:ppc64el libldap-common:ppc64el libgpm2:ppc64el publicsuffix:ppc64el ca-certificates libsasl2-modules:ppc64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-powerpc64le-linux-gnu bsdextrautils build-essential cpp-11-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-11-cross-base gcc-11-powerpc64le-linux-gnu gcc-11-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbamtools-dev:ppc64el libbamtools2.5.1:ppc64el libbrotli1:ppc64el libbwa-dev:ppc64el libbz2-1.0:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4-gnutls-dev:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el libdisorder-dev:ppc64el libdisorder0:ppc64el libdpkg-perl libelf1 libexpat1 libfastahack-dev:ppc64el libfastahack0:ppc64el libffi8:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:ppc64el libfml0:ppc64el libgcc-11-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libhtscodecs2:ppc64el libicu67 libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libjsoncpp-dev:ppc64el libjsoncpp24:ppc64el libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el libldap-2.4-2:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmpdec3 libncurses6:ppc64el libnettle8:ppc64el libnghttp2-14:ppc64el libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el libperl5.32 libpipeline1 libpsl5:ppc64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross librtmp1:ppc64el libsasl2-2:ppc64el libsasl2-modules-db:ppc64el libseqlib-dev:ppc64el libseqlib2:ppc64el libsigsegv2 libsmithwaterman-dev:ppc64el libsmithwaterman0:ppc64el libsqlite3-0 libssh2-1:ppc64el libssl1.1:ppc64el libssw-dev:ppc64el libssw0:ppc64el libstdc++-11-dev libstdc++-11-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtabixpp-dev:ppc64el libtabixpp0:ppc64el libtasn1-6:ppc64el libtinfo6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libvcflib-dev:ppc64el libvcflib1:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types meson ninja-build perl perl-modules-5.32 pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal rpcsvc-proto samtools:ppc64el sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 300 MB of archives. After this operation, 1085 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1000 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-4 [143 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.7-4 [804 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.1-2+b1 [104 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.7-4 [1963 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 4.0.0 [30.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.7-4 [1688 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.7-4 [480 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-11-base ppc64el 11.2.0-10 [206 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.4.0-3 [200 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-2 [819 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 bc amd64 1.07.1-3+b1 [110 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.37-7 [2392 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-4 [2251 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-10 [1952 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-10 [49.7 MB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-powerpc64le-linux-gnu-base amd64 11.2.0-9cross1 [206 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-powerpc64le-linux-gnu amd64 11.2.0-9cross1 [47.6 MB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:11.2.0-2 [17.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.32-1cross4 [1547 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 11.2.0-9cross1 [31.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 11.2.0-9cross1 [111 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 11.2.0-9cross1 [28.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 11.2.0-9cross1 [9696 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-ppc64el-cross all 11.2.0-9cross1 [2030 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 11.2.0-9cross1 [899 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 11.2.0-9cross1 [2014 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 11.2.0-9cross1 [614 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 11.2.0-9cross1 [851 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 11.2.0-9cross1 [150 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-ppc64el-cross all 11.2.0-9cross1 [1270 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-powerpc64le-linux-gnu amd64 11.2.0-9cross1 [54.1 MB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:11.2.0-2 [1468 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.10.46-4cross4 [1463 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.32-1cross4 [2286 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-ppc64el-cross all 11.2.0-9cross1 [2043 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-powerpc64le-linux-gnu amd64 11.2.0-9cross1 [51.8 MB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:11.2.0-2 [1184 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.9 [6716 B] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-2 [15.5 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.2 [1056 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 11.2.0-10 [30.9 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.32-4 [2847 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.4.0-3 [2791 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 11.2.0-10 [9872 B] Get:106 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 11.2.0-10 [657 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main ppc64el libbamtools2.5.1 ppc64el 2.5.1+dfsg-9 [168 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main ppc64el libbamtools-dev ppc64el 2.5.1+dfsg-9 [222 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main ppc64el libbrotli1 ppc64el 1.0.9-2+b2 [295 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main ppc64el libbwa-dev ppc64el 0.7.17-6+b1 [158 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-4 [51.0 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.14.12-1 [1428 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.25-2 [98.5 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.25-2 [119 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main ppc64el libcom-err2 ppc64el 1.46.4-1 [75.8 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5support0 ppc64el 1.18.3-7 [68.8 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main ppc64el libk5crypto3 ppc64el 1.18.3-7 [125 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.1-2 [16.7 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl1.1 ppc64el 1.1.1l-1 [1542 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5-3 ppc64el 1.18.3-7 [392 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.18.3-7 [179 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc3 ppc64el 1.3.2-2 [95.4 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc-dev ppc64el 1.3.2-2 [209 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.32-4 [2295 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main ppc64el libgmp10 ppc64el 2:6.2.1+dfsg-2 [575 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main ppc64el libnettle8 ppc64el 3.7.3-1 [297 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main ppc64el libhogweed6 ppc64el 3.7.3-1 [324 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main ppc64el libunistring2 ppc64el 0.9.10-6 [394 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main ppc64el libidn2-0 ppc64el 2.3.2-2 [97.9 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main ppc64el libffi8 ppc64el 3.4.2-3 [26.9 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main ppc64el libp11-kit0 ppc64el 0.24.0-5 [346 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main ppc64el libtasn1-6 ppc64el 4.17.0-2 [60.0 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main ppc64el libgnutls30 ppc64el 3.7.2-2 [1325 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.8 [722 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2.1 [71.2 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2.1 [115 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main ppc64el libldap-2.4-2 ppc64el 2.4.59+dfsg-1 [249 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.43.0-1 [85.0 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main ppc64el libpsl5 ppc64el 0.21.0-1.2 [59.3 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2+b2 [65.9 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main ppc64el libssh2-1 ppc64el 1.10.0-2 [188 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl3-gnutls ppc64el 7.74.0-1.3+b1 [353 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl4-gnutls-dev ppc64el 7.74.0-1.3+b1 [457 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate0 ppc64el 1.8-1 [43.6 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate-dev ppc64el 1.8-1 [41.8 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main ppc64el libdisorder0 ppc64el 0.0.2+git20130809.8062ee1-3 [4928 B] Get:150 http://debian.oregonstate.edu/debian unstable/main ppc64el libdisorder-dev ppc64el 0.0.2+git20130809.8062ee1-3 [4700 B] Get:151 http://debian.oregonstate.edu/debian unstable/main ppc64el libfastahack0 ppc64el 1.0.0+dfsg-9 [26.9 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main ppc64el libfastahack-dev ppc64el 1.0.0+dfsg-9 [28.7 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main ppc64el libfml0 ppc64el 0.1+git20190320.b499514-1+b1 [82.0 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2 [195 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main ppc64el libfml-dev ppc64el 0.1+git20190320.b499514-1+b1 [96.1 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 11.2.0-10 [113 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 11.2.0-10 [28.9 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 11.2.0-10 [899 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 11.2.0-10 [2022 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 11.2.0-10 [852 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 11.2.0-10 [150 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.4.0-3 [1257 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.70.0-1+b1 [1402 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main ppc64el libhtscodecs2 ppc64el 1.1.1-3+b1 [62.7 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma5 ppc64el 5.2.5-2 [178 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts3 ppc64el 1.13+ds-2 [433 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma-dev ppc64el 5.2.5-2 [242 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts-dev ppc64el 1.13+ds-2 [4106 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main ppc64el libjsoncpp24 ppc64el 1.9.4-5 [82.0 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main ppc64el libjsoncpp-dev ppc64el 1.9.4-5 [25.7 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main ppc64el libtinfo6 ppc64el 6.2+20210905-1 [357 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main ppc64el libncurses6 ppc64el 6.2+20210905-1 [116 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main ppc64el libssw0 ppc64el 1.1-13 [19.8 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main ppc64el libseqlib2 ppc64el 1.2.0+dfsg-6 [172 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main ppc64el libssw-dev ppc64el 1.1-13 [22.8 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main ppc64el libseqlib-dev ppc64el 1.2.0+dfsg-6 [224 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main ppc64el libsmithwaterman0 ppc64el 0.0+git20160702.2610e25-12 [36.9 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main ppc64el libsmithwaterman-dev ppc64el 0.0+git20160702.2610e25-12 [42.0 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.4.0-3 [1771 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main ppc64el libtabixpp0 ppc64el 1.1.0-4 [9516 B] Get:181 http://debian.oregonstate.edu/debian unstable/main ppc64el libtabixpp-dev ppc64el 1.1.0-4 [8744 B] Get:182 http://debian.oregonstate.edu/debian unstable/main ppc64el libvcflib1 ppc64el 1.0.2+dfsg-3 [156 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main ppc64el libvcflib-dev ppc64el 1.0.2+dfsg-3 [85.0 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 58.2.0-1 [192 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.9.7-1 [79.4 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.9.7-1 [146 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.59.2-1 [496 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main ppc64el samtools ppc64el 1.13-2 [598 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 300 MB in 2s (124 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10546 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-4_amd64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../05-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... 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Setting up libsqlite3-0:amd64 (3.36.0-2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:ppc64el (5.14.12-1) ... Setting up bc (1.07.1-3+b1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up ninja-build (1.10.1-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up gcc-11-powerpc64le-linux-gnu-base:amd64 (11.2.0-9cross1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libbwa-dev:ppc64el (0.7.17-6+b1) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up libatomic1-ppc64el-cross (11.2.0-9cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up linux-libc-dev-ppc64el-cross (5.10.46-4cross4) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libc6-dev:amd64 (2.32-4) ... Setting up libgcc-s1-ppc64el-cross (11.2.0-9cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.37-7) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libpython3.9-stdlib:amd64 (3.9.7-4) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up gcc-9-base:ppc64el (9.4.0-3) ... Setting up gettext (0.21-4) ... Setting up libasan6-ppc64el-cross (11.2.0-9cross1) ... Setting up libc6-dev-ppc64el-cross (2.32-1cross4) ... Setting up libtool (2.4.6-15) ... Setting up libquadmath0-ppc64el-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up cpp-11-powerpc64le-linux-gnu (11.2.0-9cross1) ... Setting up libgomp1-ppc64el-cross (11.2.0-9cross1) ... Setting up liblsan0-ppc64el-cross (11.2.0-9cross1) ... Setting up perl (5.32.1-6) ... Setting up libtsan0-ppc64el-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up libstdc++6-ppc64el-cross (11.2.0-9cross1) ... Setting up autoconf (2.71-2) ... Setting up libitm1-ppc64el-cross (11.2.0-9cross1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-10) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up libsub-override-perl (0.09-2) ... Setting up python3.9 (3.9.7-4) ... Setting up cpp-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up g++-11 (11.2.0-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libubsan1-ppc64el-cross (11.2.0-9cross1) ... Setting up libdebhelper-perl (13.5.2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up python3 (3.9.2-3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up pkg-config (0.29.2-1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libgcc-11-dev-ppc64el-cross (11.2.0-9cross1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up python3-pkg-resources (58.2.0-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up gcc-11-powerpc64le-linux-gnu (11.2.0-9cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up meson (0.59.2-1) ... Setting up libstdc++-11-dev-ppc64el-cross (11.2.0-9cross1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up g++-11-powerpc64le-linux-gnu (11.2.0-9cross1) ... Setting up g++-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.5.2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-ppc64el (12.9) ... Setting up libgcc-s1:ppc64el (11.2.0-10) ... Setting up libc6:ppc64el (2.32-4) ... Setting up libffi8:ppc64el (3.4.2-3) ... Setting up libtasn1-6:ppc64el (4.17.0-2) ... Setting up libbz2-1.0:ppc64el (1.0.8-4) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg1-0.8) ... Setting up libstdc++6:ppc64el (11.2.0-10) ... Setting up liblsan0:ppc64el (11.2.0-10) ... Setting up libitm1:ppc64el (11.2.0-10) ... Setting up libtinfo6:ppc64el (6.2+20210905-1) ... Setting up libtsan0:ppc64el (11.2.0-10) ... Setting up libhtscodecs2:ppc64el (1.1.1-3+b1) ... Setting up libdisorder0:ppc64el (0.0.2+git20130809.8062ee1-3) ... Setting up libkeyutils1:ppc64el (1.6.1-2) ... Setting up liblzma5:ppc64el (5.2.5-2) ... Setting up libssl1.1:ppc64el (1.1.1l-1) ... Setting up libbrotli1:ppc64el (1.0.9-2+b2) ... Setting up libsmithwaterman0:ppc64el (0.0+git20160702.2610e25-12) ... Setting up libnghttp2-14:ppc64el (1.43.0-1) ... Setting up libunistring2:ppc64el (0.9.10-6) ... Setting up libdeflate0:ppc64el (1.8-1) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-2) ... Setting up libcrypt1:ppc64el (1:4.4.25-2) ... Setting up libidn2-0:ppc64el (2.3.2-2) ... Setting up libcom-err2:ppc64el (1.46.4-1) ... Setting up libgomp1:ppc64el (11.2.0-10) ... Setting up libfml0:ppc64el (0.1+git20190320.b499514-1+b1) ... Setting up libfastahack0:ppc64el (1.0.0+dfsg-9) ... Setting up libkrb5support0:ppc64el (1.18.3-7) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-2.1) ... Setting up libfastahack-dev:ppc64el (1.0.0+dfsg-9) ... Setting up libasan5:ppc64el (9.4.0-3) ... Setting up libnettle8:ppc64el (3.7.3-1) ... Setting up libgmp10:ppc64el (2:6.2.1+dfsg-2) ... Setting up libncurses6:ppc64el (6.2+20210905-1) ... Setting up libquadmath0:ppc64el (11.2.0-10) ... Setting up libp11-kit0:ppc64el (0.24.0-5) ... Setting up libbamtools2.5.1:ppc64el (2.5.1+dfsg-9) ... Setting up libatomic1:ppc64el (11.2.0-10) ... Setting up libk5crypto3:ppc64el (1.18.3-7) ... Setting up libdisorder-dev:ppc64el (0.0.2+git20130809.8062ee1-3) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:ppc64el (1.9.4-5) ... Setting up liblzma-dev:ppc64el (5.2.5-2) ... Setting up libubsan1:ppc64el (11.2.0-10) ... Setting up libcrypt-dev:ppc64el (1:4.4.25-2) ... Setting up libssh2-1:ppc64el (1.10.0-2) ... Setting up libkrb5-3:ppc64el (1.18.3-7) ... Setting up libdeflate-dev:ppc64el (1.8-1) ... Setting up libssw0:ppc64el (1.1-13) ... Setting up libjsoncpp-dev:ppc64el (1.9.4-5) ... Setting up libpsl5:ppc64el (0.21.0-1.2) ... Setting up libhogweed6:ppc64el (3.7.3-1) ... Setting up libssw-dev:ppc64el (1.1-13) ... Setting up libgcc-9-dev:ppc64el (9.4.0-3) ... Setting up libgnutls30:ppc64el (3.7.2-2) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libbamtools-dev:ppc64el (2.5.1+dfsg-9) ... Setting up libgssapi-krb5-2:ppc64el (1.18.3-7) ... Setting up libsmithwaterman-dev:ppc64el (0.0+git20160702.2610e25-12) ... Setting up libtirpc3:ppc64el (1.3.2-2) ... Setting up libldap-2.4-2:ppc64el (2.4.59+dfsg-1) ... Setting up libcurl3-gnutls:ppc64el (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:ppc64el (7.74.0-1.3+b1) ... Setting up libtirpc-dev:ppc64el (1.3.2-2) ... Setting up libnsl2:ppc64el (1.3.0-2) ... Setting up libhts3:ppc64el (1.13+ds-2) ... Setting up samtools:ppc64el (1.13-2) ... Setting up libnsl-dev:ppc64el (1.3.0-2) ... Setting up libtabixpp0:ppc64el (1.1.0-4) ... Setting up libc6-dev:ppc64el (2.32-4) ... Setting up libseqlib2:ppc64el (1.2.0+dfsg-6) ... Setting up libstdc++-9-dev:ppc64el (9.4.0-3) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2) ... Setting up libvcflib1:ppc64el (1.0.2+dfsg-3) ... Setting up libfml-dev:ppc64el (0.1+git20190320.b499514-1+b1) ... Setting up libhts-dev:ppc64el (1.13+ds-2) ... Setting up libseqlib-dev:ppc64el (1.2.0+dfsg-6) ... Setting up libtabixpp-dev:ppc64el (1.1.0-4) ... Setting up libvcflib-dev:ppc64el (1.0.2+dfsg-3) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-ppc64el-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-10 libstdc++6-ppc64el-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 bc_1.07.1-3+b1 binutils_2.37-7 binutils-common_2.37-7 binutils-powerpc64le-linux-gnu_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-10 cpp-11-powerpc64le-linux-gnu_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-powerpc64le-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-ppc64el_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-4 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 g++-11-powerpc64le-linux-gnu_11.2.0-9cross1 g++-powerpc64le-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-11-cross-base_11.2.0-9cross1 gcc-11-powerpc64le-linux-gnu_11.2.0-9cross1 gcc-11-powerpc64le-linux-gnu-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-3 gcc-powerpc64le-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-10 libasan6-ppc64el-cross_11.2.0-9cross1 libatomic1_11.2.0-10 libatomic1-ppc64el-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbamtools-dev_2.5.1+dfsg-9 libbamtools2.5.1_2.5.1+dfsg-9 libbinutils_2.37-7 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b2 libbwa-dev_0.7.17-6+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-dev-ppc64el-cross_2.32-1cross4 libc6-ppc64el-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libcurl3-gnutls_7.74.0-1.3+b1 libcurl4-gnutls-dev_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.8-1 libdeflate0_1.8-1 libdisorder-dev_0.0.2+git20130809.8062ee1-3 libdisorder0_0.0.2+git20130809.8062ee1-3 libdpkg-perl_1.20.9 libelf1_0.185-2 libexpat1_2.4.1-2+b1 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libfastahack-dev_1.0.0+dfsg-9 libfastahack0_1.0.0+dfsg-9 libfdisk1_2.37.2-4 libffi6_3.2.1-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-2 libfile-which-perl_1.23-1 libfml-dev_0.1+git20190320.b499514-1+b1 libfml0_0.1+git20190320.b499514-1+b1 libgcc-11-dev_11.2.0-10 libgcc-11-dev-ppc64el-cross_11.2.0-9cross1 libgcc-9-dev_9.4.0-3 libgcc-s1_11.2.0-10 libgcc-s1-ppc64el-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libglib2.0-0_2.70.0-1+b1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgomp1-ppc64el-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3+b1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.24-2 libitm1_11.2.0-10 libitm1-ppc64el-cross_11.2.0-9cross1 libjsoncpp-dev_1.9.4-5 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-10 liblsan0-ppc64el-cross_11.2.0-9cross1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.7-4 libpython3.9-stdlib_3.9.7-4 libquadmath0_11.2.0-10 libquadmath0-ppc64el-cross_11.2.0-9cross1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libseqlib-dev_1.2.0+dfsg-6 libseqlib2_1.2.0+dfsg-6 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsmithwaterman-dev_0.0+git20160702.2610e25-12 libsmithwaterman0_0.0+git20160702.2610e25-12 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-ppc64el-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-10 libstdc++6-ppc64el-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtabixpp-dev_1.1.0-4 libtabixpp0_1.1.0-4 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-10 libtsan0-ppc64el-cross_11.2.0-9cross1 libubsan1_11.2.0-10 libubsan1-ppc64el-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libvcflib-dev_1.0.2+dfsg-3 libvcflib1_1.0.2+dfsg-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 linux-libc-dev-ppc64el-cross_5.10.46-4cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 meson_0.59.2-1 mount_2.37.2-4 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 ninja-build_1.10.1-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3-pkg-resources_58.2.0-1 python3.9_3.9.7-4 python3.9-minimal_3.9.7-4 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 samtools_1.13-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021d-1 ucf_3.0043 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.5-3 Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel , libvcflib-tools Package-List: freebayes deb science optional arch=any Checksums-Sha1: 7e677dd88ba1721ec5a397cbd72015fe530861af 2890213 freebayes_1.3.5.orig.tar.gz 948b434123f7ce7ddcd028db7f78eab261c8cab1 11356 freebayes_1.3.5-3.debian.tar.xz Checksums-Sha256: af195a8c54b742d01af5a7e1fd1781a89290d726b310216c83e78c650d7aee49 2890213 freebayes_1.3.5.orig.tar.gz 8c8d06479b35e808cc8ad8d606959b1ff9156c7813e626a1a73cf2a1dc656046 11356 freebayes_1.3.5-3.debian.tar.xz Files: 0474f30e2cc128973cac9d12ea726d50 2890213 freebayes_1.3.5.orig.tar.gz 5f8bb4c2d82561a94a5fe827c31a05cf 11356 freebayes_1.3.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFek34RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEL8Q//boYo8I9zX88InZaqkFefO6lqyFbkksZ1 9T8KtJe1bfnoJjDpzC0ublO9DlqN/V6lMUzGcsRnlHEzyGx8jfGU9OHsstZhNMvM uXh/0P+r1RZGrf/llzKypuoo/B/dZBp9q/lRxetmqJl0gQrEy+N5i4cGdj3igu/w 6DhQAbR56L0xkDMwOARBiC+3dOMkwtMP8KleGgLm+EF/YvH5l+Rdz1FJAT6VAxMy NcmmfprFfzCKBTs80EjQfypXJfJKSbyAQuaytgljl5+/q3hsETl2tmnPMfXXQllq 90GTfKtnBYyZMqzH/Vlw0+RThjsQZt2UhVJQgnw/j+zSmfZw9/orct8TCn1RfUlN 8REVxCMbMN8A/hErnDzHHhiCx8kEdmMYZtmNyh+7amKiSk9g6aRT6xI1N2s3zC4O 2vvn9lBrHiZFFp1fb+ZGB8HGKfRgRIVMV0abFQsDjviJb4W8a5fmU57p0QEuAX5s WfHjoAtpylIIJ+Fr8lNSfVhmmT4eBiNkKDaVTMOvuksfkC7CWlc0b81CmY6zPjEc F+GnR5OQpzzuDQ5F0VLQIVVkASFBodGX0W9l4rRxRDP527IznVsi5WgXHa+06kKS FGbjtc4YctDwOgdPNCgtfwG4WcT0EnY/sO9Bil8Y+qCvWHC/8QR9PaiVvU/eZbo9 F90epd7WOoQ= =3SK/ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.MIZjbe8N/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 7 06:28:14 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./freebayes_1.3.5-3.dsc dpkg-source: info: extracting freebayes in /<> dpkg-source: info: unpacking freebayes_1.3.5.orig.tar.gz dpkg-source: info: unpacking freebayes_1.3.5-3.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-17bccf48-0ed7-4ac6-9a61-e52a5c16e624 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package freebayes dpkg-buildpackage: info: source version 1.3.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --buildsystem=meson --builddir=build dh_auto_clean -O--buildsystem=meson -O--builddir=build dh_autoreconf_clean -O--buildsystem=meson -O--builddir=build dh_clean -O--buildsystem=meson -O--builddir=build debian/rules binary-arch dh binary-arch --buildsystem=meson --builddir=build dh_update_autotools_config -a -O--buildsystem=meson -O--builddir=build dh_autoreconf -a -O--buildsystem=meson -O--builddir=build dh_auto_configure -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/powerpc64le-linux-gnu --cross-file /<>/debian/.debhelper/generated/_source/meson-cross-file.conf WARNING: Unknown CPU family powerpc64le, please report this at https://github.com/mesonbuild/meson/issues/new DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 0.59.2 Source dir: /<> Build dir: /<>/build Build type: cross build Project name: freebayes Project version: 1.3.4 C compiler for the host machine: /usr/bin/powerpc64le-linux-gnu-gcc (gcc 11.2.0 "powerpc64le-linux-gnu-gcc (Debian 11.2.0-9) 11.2.0") C linker for the host machine: /usr/bin/powerpc64le-linux-gnu-gcc ld.bfd 2.37 C++ compiler for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ (gcc 11.2.0 "powerpc64le-linux-gnu-g++ (Debian 11.2.0-9) 11.2.0") C++ linker for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ ld.bfd 2.37 C compiler for the build machine: cc (gcc 11.2.0 "cc (Debian 11.2.0-10) 11.2.0") C linker for the build machine: cc ld.bfd 2.37 C++ compiler for the build machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-10) 11.2.0") C++ linker for the build machine: c++ ld.bfd 2.37 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: powerpc64le Host machine cpu: ppc64el Target machine cpu family: powerpc64le Target machine cpu: ppc64el Found pkg-config: /usr/bin/powerpc64le-linux-gnu-pkg-config (0.29.2) Run-time dependency zlib found: YES 1.2.11 Run-time dependency liblzma found: YES 5.2.5 Run-time dependency threads found: YES Run-time dependency htslib found: YES 1.13+ds Library tabixpp found: YES Run-time dependency libvcflib found: YES 1.0 Run-time dependency libseqlib found: YES 1.0 Compiler for C++ supports arguments -fpermissive: YES Compiler for C++ supports arguments -Wno-reorder: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Program prove found: YES (/usr/bin/prove) Build targets in project: 3 Option optimization is: 0 [default: 3] Found ninja-1.10.1 at /usr/bin/ninja dh_auto_build -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 ninja -j1 -v [1/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Allele.cpp.o -MF libfreebayes_common.a.p/src_Allele.cpp.o.d -o libfreebayes_common.a.p/src_Allele.cpp.o -c ../src/Allele.cpp ../src/Allele.cpp: In member function ‘const short int Allele::currentQuality() const’: ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_GENOTYPE’ not handled in switch [-Wswitch] 160 | switch (this->type) { | ^ ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_NULL’ not handled in switch [-Wswitch] [2/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp [3/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_BedReader.cpp.o -MF libfreebayes_common.a.p/src_BedReader.cpp.o.d -o libfreebayes_common.a.p/src_BedReader.cpp.o -c ../src/BedReader.cpp [4/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Bias.cpp.o -MF libfreebayes_common.a.p/src_Bias.cpp.o.d -o libfreebayes_common.a.p/src_Bias.cpp.o -c ../src/Bias.cpp [5/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_CNV.cpp.o -MF libfreebayes_common.a.p/src_CNV.cpp.o.d -o libfreebayes_common.a.p/src_CNV.cpp.o -c ../src/CNV.cpp [6/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Contamination.cpp.o -MF libfreebayes_common.a.p/src_Contamination.cpp.o.d -o libfreebayes_common.a.p/src_Contamination.cpp.o -c ../src/Contamination.cpp [7/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_DataLikelihood.cpp.o -MF libfreebayes_common.a.p/src_DataLikelihood.cpp.o.d -o libfreebayes_common.a.p/src_DataLikelihood.cpp.o -c ../src/DataLikelihood.cpp [8/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Dirichlet.cpp.o -MF libfreebayes_common.a.p/src_Dirichlet.cpp.o.d -o libfreebayes_common.a.p/src_Dirichlet.cpp.o -c ../src/Dirichlet.cpp [9/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Ewens.cpp.o -MF libfreebayes_common.a.p/src_Ewens.cpp.o.d -o libfreebayes_common.a.p/src_Ewens.cpp.o -c ../src/Ewens.cpp [10/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_FBFasta.cpp.o -MF libfreebayes_common.a.p/src_FBFasta.cpp.o.d -o libfreebayes_common.a.p/src_FBFasta.cpp.o -c ../src/FBFasta.cpp [11/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Genotype.cpp.o -MF libfreebayes_common.a.p/src_Genotype.cpp.o.d -o libfreebayes_common.a.p/src_Genotype.cpp.o -c ../src/Genotype.cpp [12/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_IndelAllele.cpp.o -MF libfreebayes_common.a.p/src_IndelAllele.cpp.o.d -o libfreebayes_common.a.p/src_IndelAllele.cpp.o -c ../src/IndelAllele.cpp [13/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_LeftAlign.cpp.o -MF libfreebayes_common.a.p/src_LeftAlign.cpp.o.d -o libfreebayes_common.a.p/src_LeftAlign.cpp.o -c ../src/LeftAlign.cpp [14/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Marginals.cpp.o -MF libfreebayes_common.a.p/src_Marginals.cpp.o.d -o libfreebayes_common.a.p/src_Marginals.cpp.o -c ../src/Marginals.cpp [15/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Multinomial.cpp.o -MF libfreebayes_common.a.p/src_Multinomial.cpp.o.d -o libfreebayes_common.a.p/src_Multinomial.cpp.o -c ../src/Multinomial.cpp [16/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_NonCall.cpp.o -MF libfreebayes_common.a.p/src_NonCall.cpp.o.d -o libfreebayes_common.a.p/src_NonCall.cpp.o -c ../src/NonCall.cpp [17/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Parameters.cpp.o -MF libfreebayes_common.a.p/src_Parameters.cpp.o.d -o libfreebayes_common.a.p/src_Parameters.cpp.o -c ../src/Parameters.cpp [18/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Result.cpp.o -MF libfreebayes_common.a.p/src_Result.cpp.o.d -o libfreebayes_common.a.p/src_Result.cpp.o -c ../src/Result.cpp [19/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_ResultData.cpp.o -MF libfreebayes_common.a.p/src_ResultData.cpp.o.d -o libfreebayes_common.a.p/src_ResultData.cpp.o -c ../src/ResultData.cpp [20/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Sample.cpp.o -MF libfreebayes_common.a.p/src_Sample.cpp.o.d -o libfreebayes_common.a.p/src_Sample.cpp.o -c ../src/Sample.cpp [21/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -MF libfreebayes_common.a.p/src_SegfaultHandler.cpp.o.d -o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -c ../src/SegfaultHandler.cpp [22/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Utility.cpp.o -MF libfreebayes_common.a.p/src_Utility.cpp.o.d -o libfreebayes_common.a.p/src_Utility.cpp.o -c ../src/Utility.cpp In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25: ../ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25: ../ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../src/Utility.cpp:381:48: ../ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../src/Utility.cpp:381:48: ../ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In file included from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with unsigned int argument_size = 8; unsigned int value_size = 8]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with unsigned int argument_size = 8; unsigned int value_size = 8]’ at ../ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with unsigned int value_size = 8]’ at ../ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../src/Utility.cpp:381:48: ../ttmath/ttmathint.h:652:61: warning: ‘maxNb.ttmath::Big<8, 2>::exponent.ttmath::Int<8>::.ttmath::UInt<8>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../src/Utility.h:18, from ../src/Utility.cpp:3: ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ [23/27] rm -f libfreebayes_common.a && /usr/bin/powerpc64le-linux-gnu-ar csrD libfreebayes_common.a libfreebayes_common.a.p/src_Allele.cpp.o libfreebayes_common.a.p/src_AlleleParser.cpp.o libfreebayes_common.a.p/src_BedReader.cpp.o libfreebayes_common.a.p/src_Bias.cpp.o libfreebayes_common.a.p/src_CNV.cpp.o libfreebayes_common.a.p/src_Contamination.cpp.o libfreebayes_common.a.p/src_DataLikelihood.cpp.o libfreebayes_common.a.p/src_Dirichlet.cpp.o libfreebayes_common.a.p/src_Ewens.cpp.o libfreebayes_common.a.p/src_FBFasta.cpp.o libfreebayes_common.a.p/src_Genotype.cpp.o libfreebayes_common.a.p/src_IndelAllele.cpp.o libfreebayes_common.a.p/src_LeftAlign.cpp.o libfreebayes_common.a.p/src_Marginals.cpp.o libfreebayes_common.a.p/src_Multinomial.cpp.o libfreebayes_common.a.p/src_NonCall.cpp.o libfreebayes_common.a.p/src_Parameters.cpp.o libfreebayes_common.a.p/src_Result.cpp.o libfreebayes_common.a.p/src_ResultData.cpp.o libfreebayes_common.a.p/src_Sample.cpp.o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o libfreebayes_common.a.p/src_Utility.cpp.o [24/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ifreebayes.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ freebayes.p/src_freebayes.cpp.o -MF freebayes.p/src_freebayes.cpp.o.d -o freebayes.p/src_freebayes.cpp.o -c ../src/freebayes.cpp [25/27] /usr/bin/powerpc64le-linux-gnu-g++ -o freebayes freebayes.p/src_freebayes.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so -pthread /usr/lib/powerpc64le-linux-gnu/libhts.so -ltabixpp /usr/lib/powerpc64le-linux-gnu/libvcflib.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so /usr/lib/powerpc64le-linux-gnu/libseqlib.so /usr/lib/libbwa.a -ltabixpp -Wl,--end-group [26/27] /usr/bin/powerpc64le-linux-gnu-g++ -Ibamleftalign.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ bamleftalign.p/src_bamleftalign.cpp.o -MF bamleftalign.p/src_bamleftalign.cpp.o.d -o bamleftalign.p/src_bamleftalign.cpp.o -c ../src/bamleftalign.cpp [27/27] /usr/bin/powerpc64le-linux-gnu-g++ -o bamleftalign bamleftalign.p/src_bamleftalign.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so -pthread /usr/lib/powerpc64le-linux-gnu/libhts.so /usr/lib/powerpc64le-linux-gnu/libvcflib.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so /usr/lib/powerpc64le-linux-gnu/libseqlib.so /usr/lib/libbwa.a -ltabixpp -Wl,--end-group create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson -O--builddir=build dh_prep -a -O--buildsystem=meson -O--builddir=build dh_auto_install --destdir=debian/freebayes/ -a -O--buildsystem=meson -O--builddir=build cd build && DESTDIR=/<>/debian/freebayes LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing freebayes to /<>/debian/freebayes/usr/bin Installing bamleftalign to /<>/debian/freebayes/usr/bin dh_installdocs -a -O--buildsystem=meson -O--builddir=build dh_installchangelogs -a -O--buildsystem=meson -O--builddir=build dh_installexamples -a -O--buildsystem=meson -O--builddir=build dh_installsystemduser -a -O--buildsystem=meson -O--builddir=build dh_perl -a -O--buildsystem=meson -O--builddir=build dh_link -a -O--buildsystem=meson -O--builddir=build dh_strip_nondeterminism -a -O--buildsystem=meson -O--builddir=build dh_compress -a -O--buildsystem=meson -O--builddir=build dh_fixperms -a -O--buildsystem=meson -O--builddir=build dh_missing -a -O--buildsystem=meson -O--builddir=build dh_dwz -a -O--buildsystem=meson -O--builddir=build dh_strip -a -O--buildsystem=meson -O--builddir=build dh_makeshlibs -a -O--buildsystem=meson -O--builddir=build dh_shlibdeps -a -O--buildsystem=meson -O--builddir=build dh_installdeb -a -O--buildsystem=meson -O--builddir=build dh_gencontrol -a -O--buildsystem=meson -O--builddir=build dh_md5sums -a -O--buildsystem=meson -O--builddir=build dh_builddeb -a -O--buildsystem=meson -O--builddir=build dpkg-deb: building package 'freebayes' in '../freebayes_1.3.5-3_ppc64el.deb'. dpkg-deb: building package 'freebayes-dbgsym' in '../freebayes-dbgsym_1.3.5-3_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../freebayes_1.3.5-3_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-21T21:43:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ freebayes_1.3.5-3_ppc64el.changes: ---------------------------------- Format: 1.8 Date: Thu, 07 Oct 2021 08:09:27 +0200 Source: freebayes Binary: freebayes freebayes-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 1.3.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: freebayes - Bayesian haplotype-based polymorphism discovery and genotyping Changes: freebayes (1.3.5-3) unstable; urgency=medium . * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on libvcflib-tools. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: freebayes Binary: freebayes freebayes-dbgsym Architecture: ppc64el Version: 1.3.5-3 Checksums-Md5: 83b92a66f295118e3f4872fdfe92dca8 6506136 freebayes-dbgsym_1.3.5-3_ppc64el.deb 118af0acde802da8f643dc7e3cbd9d37 1479824 freebayes_1.3.5-3_ppc64el.deb Checksums-Sha1: 675a9e360c7d27c56d25aa946c506447aecadb37 6506136 freebayes-dbgsym_1.3.5-3_ppc64el.deb 450fa425460e598b0ba55dccbcec748f93e367b1 1479824 freebayes_1.3.5-3_ppc64el.deb Checksums-Sha256: 66bf619d16c72f6c2d199c164021a233a6ac3368ecb1f5cdc8257617bcc8d7ad 6506136 freebayes-dbgsym_1.3.5-3_ppc64el.deb fb1af35b4516f9a45acc7080ef7a5d542c9ed1b98737ddf929724b142a29f8e6 1479824 freebayes_1.3.5-3_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 21 Oct 2021 21:43:19 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-3+b2), bc (= 1.07.1-3+b1), binutils (= 2.37-7), binutils-common (= 2.37-7), binutils-x86-64-linux-gnu (= 2.37-7), bsdextrautils (= 2.37.2-4), bsdutils (= 1:2.37.2-4), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-10), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.2), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-2), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-10), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-10), gcc-11-base (= 11.2.0-10), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-10), libatomic1 (= 11.2.0-10), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1), libbamtools-dev (= 2.5.1+dfsg-9), libbamtools2.5.1 (= 2.5.1+dfsg-9), libbinutils (= 2.37-7), libblkid1 (= 2.37.2-4), libbrotli1 (= 1.0.9-2+b2), libbwa-dev (= 0.7.17-6+b1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.32-4), libc-dev-bin (= 2.32-4), libc6 (= 2.32-4), libc6-dev (= 2.32-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-10), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-2), libcrypt1 (= 1:4.4.25-2), libctf-nobfd0 (= 2.37-7), libctf0 (= 2.37-7), libcurl3-gnutls (= 7.74.0-1.3+b1), libcurl4-gnutls-dev (= 7.74.0-1.3+b1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.2), libdeflate-dev (= 1.8-1), libdeflate0 (= 1.8-1), libdisorder-dev (= 0.0.2+git20130809.8062ee1-3), libdisorder0 (= 0.0.2+git20130809.8062ee1-3), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libexpat1 (= 2.4.1-2+b1), libfastahack-dev (= 1.0.0+dfsg-9), libfastahack0 (= 1.0.0+dfsg-9), libffi8 (= 3.4.2-3), libfile-stripnondeterminism-perl (= 1.12.0-2), libfml-dev (= 0.1+git20190320.b499514-1+b1), libfml0 (= 0.1+git20190320.b499514-1+b1), libgcc-11-dev (= 11.2.0-10), libgcc-s1 (= 11.2.0-10), libgcrypt20 (= 1.9.4-3+b1), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libglib2.0-0 (= 2.70.0-1+b1), libgmp10 (= 2:6.2.1+dfsg-2), libgnutls30 (= 3.7.2-2), libgomp1 (= 11.2.0-10), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1), libhts-dev (= 1.13+ds-2), libhts3 (= 1.13+ds-2), libhtscodecs2 (= 1.1.1-3+b1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-10), libjsoncpp-dev (= 1.9.4-5), libjsoncpp24 (= 1.9.4-5), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), libldap-2.4-2 (= 2.4.59+dfsg-1), liblsan0 (= 11.2.0-10), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-4), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20210905-1), libncursesw6 (= 6.2+20210905-1), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.2), libpython3-stdlib (= 3.9.2-3), libpython3.9-minimal (= 3.9.7-4), libpython3.9-stdlib (= 3.9.7-4), libquadmath0 (= 11.2.0-10), libreadline8 (= 8.1-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.2-2), libselinux1 (= 3.1-3), libseqlib-dev (= 1.2.0+dfsg-6), libseqlib2 (= 1.2.0+dfsg-6), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-4), libsmithwaterman-dev (= 0.0+git20160702.2610e25-12), libsmithwaterman0 (= 0.0+git20160702.2610e25-12), libsqlite3-0 (= 3.36.0-2), libssh2-1 (= 1.10.0-2), libssl1.1 (= 1.1.1l-1), libssw-dev (= 1.1-13), libssw0 (= 1.1-13), libstdc++-11-dev (= 11.2.0-10), libstdc++6 (= 11.2.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-1), libtabixpp-dev (= 1.1.0-4), libtabixpp0 (= 1.1.0-4), libtasn1-6 (= 4.17.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-10), libubsan1 (= 11.2.0-10), libuchardet0 (= 0.0.7-1), libudev1 (= 249.5-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4), libvcflib-dev (= 1.0.2+dfsg-3), libvcflib1 (= 1.0.2+dfsg-3), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.14.12-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), media-types (= 4.0.0), meson (= 0.59.2-1), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), ninja-build (= 1.10.1-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.2-3), python3-distutils (= 3.9.7-1), python3-lib2to3 (= 3.9.7-1), python3-minimal (= 3.9.2-3), python3-pkg-resources (= 58.2.0-1), python3.9 (= 3.9.7-4), python3.9-minimal (= 3.9.7-4), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-4), samtools (= 1.13-2), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.00-1), tar (= 1.34+dfsg-1), tzdata (= 2021d-1), util-linux (= 2.37.2-4), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1633586967" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ freebayes-dbgsym_1.3.5-3_ppc64el.deb ------------------------------------ new Debian package, version 2.0. size 6506136 bytes: control archive=652 bytes. 422 bytes, 12 lines control 303 bytes, 3 lines md5sums Package: freebayes-dbgsym Source: freebayes Version: 1.3.5-3 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 6589 Depends: freebayes (= 1.3.5-3) Section: debug Priority: optional Description: debug symbols for freebayes Build-Ids: 9eccc932c525b0a388ff36ccc3e2bff4822cf8cc dd2079c553155b9f8a54128b0ac11920183813ac drwxr-xr-x root/root 0 2021-10-07 06:09 ./ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/.build-id/9e/ -rw-r--r-- root/root 590880 2021-10-07 06:09 ./usr/lib/debug/.build-id/9e/ccc932c525b0a388ff36ccc3e2bff4822cf8cc.debug drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/.build-id/dd/ -rw-r--r-- root/root 5856592 2021-10-07 06:09 ./usr/lib/debug/.build-id/dd/2079c553155b9f8a54128b0ac11920183813ac.debug drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 283896 2021-10-07 06:09 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/freebayes.debug drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/share/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-07 06:09 ./usr/share/doc/freebayes-dbgsym -> freebayes freebayes_1.3.5-3_ppc64el.deb ----------------------------- new Debian package, version 2.0. size 1479824 bytes: control archive=2092 bytes. 848 bytes, 17 lines control 4277 bytes, 51 lines md5sums Package: freebayes Version: 1.3.5-3 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 4182 Depends: libc6 (>= 2.32), libgcc-s1 (>= 4.2), libseqlib2 (>= 1.2.0), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.2+dfsg), zlib1g (>= 1:1.1.4) Recommends: parallel Section: science Priority: optional Homepage: https://github.com/ekg/freebayes Description: Bayesian haplotype-based polymorphism discovery and genotyping FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. drwxr-xr-x root/root 0 2021-10-07 06:09 ./ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/bin/ -rwxr-xr-x root/root 1261712 2021-10-07 06:09 ./usr/bin/bamleftalign -rwxr-xr-x root/root 2113464 2021-10-07 06:09 ./usr/bin/freebayes drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/share/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/share/doc/freebayes/ -rw-r--r-- root/root 9562 2021-02-10 09:21 ./usr/share/doc/freebayes/README.md.gz -rw-r--r-- root/root 278 2021-10-07 06:09 ./usr/share/doc/freebayes/README.test -rw-r--r-- root/root 83 2021-10-07 06:09 ./usr/share/doc/freebayes/README.test_data -rw-r--r-- root/root 2505 2021-02-10 09:21 ./usr/share/doc/freebayes/RELEASE-NOTES.md -rw-r--r-- root/root 1793 2021-10-07 06:09 ./usr/share/doc/freebayes/changelog.Debian.gz -rw-r--r-- root/root 3194 2021-10-07 06:09 ./usr/share/doc/freebayes/copyright drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/ -rw-r--r-- root/root 83 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/README.test_data drwxr-xr-x root/root 0 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/bash-tap/ -rw-r--r-- root/root 906 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/pipeline.sh drwxr-xr-x root/root 0 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/regression/ -rw-r--r-- root/root 94 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/regression/README.md drwxr-xr-x root/root 0 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/splice/ -rw-r--r-- root/root 22589 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.bam -rw-r--r-- root/root 288 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.bam.bai -rw-r--r-- root/root 3801 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.fa -rw-r--r-- root/root 15 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.fa.fai drwxr-xr-x root/root 0 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/t/ -rw-r--r-- root/root 3648 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/t/00_region_and_target_handling.t -rw-r--r-- root/root 4908 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/t/01_call_variants.t -rw-r--r-- root/root 2947 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/t/01b_call_variants.t -rw-r--r-- root/root 2943 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/t/02_multi_bam.t -rw-r--r-- root/root 1488 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/t/03_reference_bases.t -rw-r--r-- root/root 246 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/targets.bed drwxr-xr-x root/root 0 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/test-simple-bash/ -rw-r--r-- root/root 17 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/test.alt -rw-r--r-- root/root 230 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/test.bam -rw-r--r-- root/root 96 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/test.bam.bai -rw-r--r-- root/root 112 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/test.bed -rw-r--r-- root/root 17 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/test.ref -rw-r--r-- root/root 15 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/test.ref.fai -rw-r--r-- root/root 550 2021-10-07 06:09 ./usr/share/doc/freebayes/examples/test.vcf drwxr-xr-x root/root 0 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/ -rw-r--r-- root/root 636 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/1read.bam -rw-r--r-- root/root 96 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/1read.bam.bai -rw-r--r-- root/root 287213 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam -rw-r--r-- root/root 96 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam.bai -rw-r--r-- root/root 155615 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.cram -rw-r--r-- root/root 16307 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.giab.vcf -rw-r--r-- root/root 287228 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam -rw-r--r-- root/root 96 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam.bai -rw-r--r-- root/root 12581 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.fa -rw-r--r-- root/root 33 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.fa.fai -rw-r--r-- root/root 2394 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.vcf.gz -rw-r--r-- root/root 120 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/hla.vcf.gz.tbi -rw-r--r-- root/root 12565 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q with spaces.fa -rw-r--r-- root/root 16 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q with spaces.fa.fai -rw-r--r-- root/root 36 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q with spaces.regions -rw-r--r-- root/root 12565 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.fa -rw-r--r-- root/root 16 2021-02-10 09:21 ./usr/share/doc/freebayes/examples/tiny/q.fa.fai -rw-r--r-- root/root 36 2021-02-10 09:21 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Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [639 B] Get:5 copy:/<>/apt_archive ./ Packages [709 B] Fetched 2311 B in 0s (89.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:ppc64el t1utils unzip 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 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libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2 [35.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-2 [60.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.008-1+b1 [12.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-4 [88.2 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.109.0 [1338 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6784 kB in 0s (30.2 MB/s) Selecting previously unselected package diffstat. (Reading database ... 23161 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.40_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. 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Unpacking libsub-identify-perl (0.14-1+b3) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../66-libsub-name-perl_0.26-1+b1_amd64.deb ... Unpacking libsub-name-perl (0.26-1+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../67-libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../68-libpath-tiny-perl_0.118-1_all.deb ... Unpacking libpath-tiny-perl (0.118-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../69-libperlio-gzip-perl_0.19-1+b7_amd64.deb ... Unpacking libperlio-gzip-perl (0.19-1+b7) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../70-libperlio-utf8-strict-perl_0.008-1+b1_amd64.deb ... Unpacking libperlio-utf8-strict-perl (0.008-1+b1) ... Selecting previously unselected package libproc-processtable-perl:amd64. Preparing to unpack .../71-libproc-processtable-perl_0.634-1_amd64.deb ... Unpacking libproc-processtable-perl:amd64 (0.634-1) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../72-libsereal-decoder-perl_4.018+ds-1+b1_amd64.deb ... Unpacking libsereal-decoder-perl (4.018+ds-1+b1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../73-libsereal-encoder-perl_4.018+ds-1+b1_amd64.deb ... Unpacking libsereal-encoder-perl (4.018+ds-1+b1) ... Selecting previously unselected package libsort-versions-perl. Preparing to unpack .../74-libsort-versions-perl_1.62-1_all.deb ... Unpacking libsort-versions-perl (1.62-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../75-libterm-readkey-perl_2.38-1+b2_amd64.deb ... Unpacking libterm-readkey-perl (2.38-1+b2) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 150564 Build-Time: 120 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 50 Job: freebayes_1.3.5-3 Lintian: pass Machine Architecture: amd64 Package: freebayes Package-Time: 201 Source-Version: 1.3.5-3 Space: 150564 Status: successful Version: 1.3.5-3 -------------------------------------------------------------------------------- Finished at 2021-10-21T21:43:20Z Build needed 00:03:21, 150564k disk space