sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | freebayes 1.3.6-2 (arm64) Wed, 09 Nov 2022 12:35:15 +0000 | +==============================================================================+ Package: freebayes Version: 1.3.6-2 Source Version: 1.3.6-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-828b1d5e-abc6-4625-b128-57fa2ed1c132' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-KnSiVX/resolver-Ev7UyL' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [161 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-11-09-0806.45-F-2022-11-09-0204.00.pdiff [15.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-11-09-0806.45-F-2022-11-09-0204.00.pdiff [15.6 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-11-09-0806.45-F-2022-11-09-0204.00.pdiff [30.1 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-11-09-0806.45-F-2022-11-09-0204.00.pdiff [30.1 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9239 kB] Fetched 9573 kB in 3s (3712 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: sysvinit-utils 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 30.4 kB of archives. After this operation, 1024 B disk space will be freed. Get:1 http://localhost:3142/debian sid/main amd64 sysvinit-utils amd64 3.05-7 [30.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.4 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15689 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.05-7_amd64.deb ... Unpacking sysvinit-utils (3.05-7) over (3.05-6) ... Setting up sysvinit-utils (3.05-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2912 kB of source archives. Get:1 http://localhost:3142/debian sid/main freebayes 1.3.6-2 (dsc) [2232 B] Get:2 http://localhost:3142/debian sid/main freebayes 1.3.6-2 (tar) [2898 kB] Get:3 http://localhost:3142/debian sid/main freebayes 1.3.6-2 (diff) [11.4 kB] Fetched 2912 kB in 0s (49.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/freebayes-KnSiVX/freebayes-1.3.6' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-KnSiVX' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [511 B] Get:5 copy:/<>/apt_archive ./ Packages [579 B] Fetched 2047 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.2:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-11-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu71 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp25:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6:arm64 libncursesw6 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline8 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl3:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-11-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libvcflib-dev:arm64 libvcflib1:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.10 python3.10-minimal readline-common samtools:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 libcurl4-doc:arm64 libgnutls28-dev:arm64 libidn11-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 low-memory-monitor gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.10-venv python3.10-doc binfmt-support readline-doc cwltool:arm64 Recommended packages: curl | wget | lynx ca-certificates:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:arm64 libldap-common:arm64 libgpm2:arm64 libgpm2 publicsuffix:arm64 libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.2:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-11-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu71 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp25:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmpdec3 libncurses6:arm64 libncursesw6 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline8 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl3:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-11-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring2:arm64 libvcflib-dev:arm64 libvcflib1:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.10 python3.10-minimal readline-common samtools:arm64 sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 467 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1004 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.10-minimal amd64 3.10.8-3 [784 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.10-minimal amd64 3.10.8-3 [1951 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.10.6-1 [38.7 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 8.0.0 [33.4 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.1 [68.4 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.1 [165 kB] Get:12 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.39.4-1 [844 kB] Get:13 http://localhost:3142/debian sid/main amd64 libpython3.10-stdlib amd64 3.10.8-3 [1685 kB] Get:14 http://localhost:3142/debian sid/main amd64 python3.10 amd64 3.10.8-3 [506 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-1 [21.7 kB] Get:16 http://localhost:3142/debian sid/main amd64 python3 amd64 3.10.6-1 [38.2 kB] Get:17 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:18 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:20 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:22 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:23 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:24 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1.1+b1 [85.9 kB] Get:25 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-3 [39.4 kB] Get:26 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.0-1+b1 [1342 kB] Get:27 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:28 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:29 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:30 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:31 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:32 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:33 http://localhost:3142/debian sid/main amd64 bc amd64 1.07.1-3+b1 [110 kB] Get:34 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.39-8 [3342 kB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu-base amd64 12.2.0-9cross2 [37.3 kB] Get:36 http://localhost:3142/debian sid/main amd64 cpp-12-aarch64-linux-gnu amd64 12.2.0-9cross2 [9151 kB] Get:37 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:12.2.0-1 [17.1 kB] Get:38 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:39 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-9cross2 [32.8 kB] Get:40 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.36-3cross1 [1002 kB] Get:41 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 12.2.0-9cross2 [34.8 kB] Get:42 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 12.2.0-9cross2 [102 kB] Get:43 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 12.2.0-9cross2 [23.4 kB] Get:44 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 12.2.0-9cross2 [9272 B] Get:45 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 12.2.0-9cross2 [2097 kB] Get:46 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 12.2.0-9cross2 [925 kB] Get:47 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 12.2.0-9cross2 [2180 kB] Get:48 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 12.2.0-9cross2 [513 kB] Get:49 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 12.2.0-9cross2 [862 kB] Get:50 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 12.2.0-9cross2 [997 kB] Get:51 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-arm64-cross all 12.2.0-9cross2 [959 kB] Get:52 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu amd64 12.2.0-9cross2 [18.0 MB] Get:53 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:12.2.0-1 [1452 B] Get:54 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 6.0.6-2cross1 [1778 kB] Get:55 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.36-3cross1 [1422 kB] Get:56 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-arm64-cross all 12.2.0-9cross2 [1975 kB] Get:57 http://localhost:3142/debian sid/main amd64 g++-12-aarch64-linux-gnu amd64 12.2.0-9cross2 [10.1 MB] Get:58 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:12.2.0-1 [1176 B] Get:59 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:61 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:62 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1 [687 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:68 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:70 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:72 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:73 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:74 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:75 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.10.1 [79.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:77 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:78 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:79 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:80 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:81 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:82 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-4 [179 kB] Get:83 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB] Get:84 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:85 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:86 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:87 http://localhost:3142/debian sid/main amd64 debhelper all 13.10.1 [940 kB] Get:88 http://localhost:3142/debian sid/main arm64 gcc-11-base arm64 11.3.0-8 [209 kB] Get:89 http://localhost:3142/debian sid/main arm64 gcc-12-base arm64 12.2.0-9 [37.1 kB] Get:90 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 12.2.0-9 [34.8 kB] Get:91 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.36-4 [2311 kB] Get:92 http://localhost:3142/debian sid/main arm64 libasan6 arm64 11.3.0-8 [1952 kB] Get:93 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 12.2.0-9 [9540 B] Get:94 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 12.2.0-9 [557 kB] Get:95 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.2.13.dfsg-1 [82.7 kB] Get:96 http://localhost:3142/debian sid/main arm64 libbamtools2.5.2 arm64 2.5.2+dfsg-2 [136 kB] Get:97 http://localhost:3142/debian sid/main arm64 linux-libc-dev arm64 6.0.7-1 [1653 kB] Get:98 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.30-1 [89.7 kB] Get:99 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.30-1 [120 kB] Get:100 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.46.6~rc1-1+b1 [14.7 kB] Get:101 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20-1+b1 [31.4 kB] Get:102 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20-1+b1 [78.7 kB] Get:103 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-1 [15.7 kB] Get:104 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.0.7-1 [1795 kB] Get:105 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20-1+b1 [312 kB] Get:106 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20-1+b1 [123 kB] Get:107 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.3+ds-1 [80.9 kB] Get:108 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:109 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.3+ds-1 [194 kB] Get:110 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:111 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.36-4 [1426 kB] Get:112 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get:113 http://localhost:3142/debian sid/main arm64 libbamtools-dev arm64 2.5.2+dfsg-2 [206 kB] Get:114 http://localhost:3142/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b4 [270 kB] Get:115 http://localhost:3142/debian sid/main arm64 libbwa-dev arm64 0.7.17-7 [148 kB] Get:116 http://localhost:3142/debian sid/main arm64 libbz2-1.0 arm64 1.0.8-5+b1 [47.5 kB] Get:117 http://localhost:3142/debian sid/main arm64 libgmp10 arm64 2:6.2.1+dfsg1-1.1 [538 kB] Get:118 http://localhost:3142/debian sid/main arm64 libnettle8 arm64 3.8.1-2 [294 kB] Get:119 http://localhost:3142/debian sid/main arm64 libhogweed6 arm64 3.8.1-2 [324 kB] Get:120 http://localhost:3142/debian sid/main arm64 libunistring2 arm64 1.0-2 [423 kB] Get:121 http://localhost:3142/debian sid/main arm64 libidn2-0 arm64 2.3.3-1+b1 [122 kB] Get:122 http://localhost:3142/debian sid/main arm64 libffi8 arm64 3.4.4-1 [20.5 kB] Get:123 http://localhost:3142/debian sid/main arm64 libp11-kit0 arm64 0.24.1-1 [335 kB] Get:124 http://localhost:3142/debian sid/main arm64 libtasn1-6 arm64 4.19.0-2 [54.2 kB] Get:125 http://localhost:3142/debian sid/main arm64 libgnutls30 arm64 3.7.8-4 [1297 kB] Get:126 http://localhost:3142/debian sid/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.10 [623 kB] Get:127 http://localhost:3142/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-8 [39.2 kB] Get:128 http://localhost:3142/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg-8 [76.5 kB] Get:129 http://localhost:3142/debian sid/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-2+b1 [171 kB] Get:130 http://localhost:3142/debian sid/main arm64 libnghttp2-14 arm64 1.50.0-1+b1 [69.5 kB] Get:131 http://localhost:3142/debian sid/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:132 http://localhost:3142/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:133 http://localhost:3142/debian sid/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get:134 http://localhost:3142/debian sid/main arm64 libzstd1 arm64 1.5.2+dfsg-1 [241 kB] Get:135 http://localhost:3142/debian sid/main arm64 libcurl3-gnutls arm64 7.86.0-1 [333 kB] Get:136 http://localhost:3142/debian sid/main arm64 libcurl4-gnutls-dev arm64 7.86.0-1 [439 kB] Get:137 http://localhost:3142/debian sid/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get:138 http://localhost:3142/debian sid/main arm64 libdeflate-dev arm64 1.14-1 [50.0 kB] Get:139 http://localhost:3142/debian sid/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4+b1 [4880 B] Get:140 http://localhost:3142/debian sid/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-4+b1 [4856 B] Get:141 http://localhost:3142/debian sid/main arm64 libfastahack0 arm64 1.0.0+dfsg-10 [23.8 kB] Get:142 http://localhost:3142/debian sid/main arm64 libfastahack-dev arm64 1.0.0+dfsg-10 [26.1 kB] Get:143 http://localhost:3142/debian sid/main arm64 libfml0 arm64 0.1+git20190320.b499514-1+b1 [65.9 kB] Get:144 http://localhost:3142/debian sid/main arm64 libfml-dev arm64 0.1+git20190320.b499514-1+b1 [79.5 kB] Get:145 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 12.2.0-9 [104 kB] Get:146 http://localhost:3142/debian sid/main arm64 libitm1 arm64 12.2.0-9 [23.9 kB] Get:147 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 12.2.0-9 [926 kB] Get:148 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.3.0-8 [1958 kB] Get:149 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 12.2.0-9 [862 kB] Get:150 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 12.2.0-9 [998 kB] Get:151 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.3.0-8 [933 kB] Get:152 http://localhost:3142/debian sid/main amd64 libglib2.0-0 amd64 2.74.1-2 [1393 kB] Get:153 http://localhost:3142/debian sid/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB] Get:154 http://localhost:3142/debian sid/main arm64 liblzma5 arm64 5.2.7-0.1 [177 kB] Get:155 http://localhost:3142/debian sid/main arm64 libhts3 arm64 1.16+ds-3 [392 kB] Get:156 http://localhost:3142/debian sid/main arm64 liblzma-dev arm64 5.2.7-0.1 [236 kB] Get:157 http://localhost:3142/debian sid/main arm64 libhts-dev arm64 1.16+ds-3 [1525 kB] Get:158 http://localhost:3142/debian sid/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get:159 http://localhost:3142/debian sid/main arm64 libjsoncpp-dev arm64 1.9.5-4 [26.4 kB] Get:160 http://localhost:3142/debian sid/main arm64 libtinfo6 arm64 6.3+20220423-2 [345 kB] Get:161 http://localhost:3142/debian sid/main arm64 libncurses6 arm64 6.3+20220423-2 [92.9 kB] Get:162 http://localhost:3142/debian sid/main arm64 libssw0 arm64 1.1-13 [18.5 kB] Get:163 http://localhost:3142/debian sid/main arm64 libseqlib2 arm64 1.2.0+dfsg-9 [141 kB] Get:164 http://localhost:3142/debian sid/main arm64 libssw-dev arm64 1.1-13 [21.9 kB] Get:165 http://localhost:3142/debian sid/main arm64 libseqlib-dev arm64 1.2.0+dfsg-9 [202 kB] Get:166 http://localhost:3142/debian sid/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12+b1 [32.7 kB] Get:167 http://localhost:3142/debian sid/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-12+b1 [38.4 kB] Get:168 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.3.0-8 [1927 kB] Get:169 http://localhost:3142/debian sid/main arm64 libtabixpp0 arm64 1.1.1-1 [9248 B] Get:170 http://localhost:3142/debian sid/main arm64 libtabixpp-dev arm64 1.1.1-1 [8472 B] Get:171 http://localhost:3142/debian sid/main arm64 libvcflib1 arm64 1.0.3+dfsg-2 [132 kB] Get:172 http://localhost:3142/debian sid/main arm64 libvcflib-dev arm64 1.0.3+dfsg-2 [85.2 kB] Get:173 http://localhost:3142/debian sid/main amd64 ninja-build amd64 1.11.1-1 [136 kB] Get:174 http://localhost:3142/debian sid/main amd64 python3-pkg-resources all 65.5.0-1 [278 kB] Get:175 http://localhost:3142/debian sid/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB] Get:176 http://localhost:3142/debian sid/main amd64 python3-distutils all 3.10.8-1 [139 kB] Get:177 http://localhost:3142/debian sid/main amd64 python3-setuptools all 65.5.0-1 [519 kB] Get:178 http://localhost:3142/debian sid/main amd64 meson all 0.64.0-1 [542 kB] Get:179 http://localhost:3142/debian sid/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:180 http://localhost:3142/debian sid/main arm64 samtools arm64 1.16.1-1 [580 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 116 MB in 5s (21.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15689 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4+b3_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b3) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.8-3_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.8-3_amd64.deb ... Unpacking python3.10-minimal (3.10.8-3) ... Setting up libpython3.10-minimal:amd64 (3.10.8-3) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.10-minimal (3.10.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 16009 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1_amd64.deb ... Unpacking python3-minimal (3.10.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.1_all.deb ... Unpacking readline-common (8.2-1.1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.2-1.1_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.39.4-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.39.4-1) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../7-libpython3.10-stdlib_3.10.8-3_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.8-3) ... Selecting previously unselected package python3.10. Preparing to unpack .../8-python3.10_3.10.8-3_amd64.deb ... Unpacking python3.10 (3.10.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.10.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3-minimal (3.10.6-1) ... Selecting previously unselected package python3. (Reading database ... 16452 files and directories currently installed.) Preparing to unpack .../000-python3_3.10.6-1_amd64.deb ... Unpacking python3 (3.10.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-9_amd64.deb ... Unpacking gettext-base (0.21-9) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-8_amd64.deb ... Unpacking groff-base (1.22.4-8) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-1.1+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-1.1+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.6-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.6-3) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.0-1+b1_amd64.deb ... Unpacking man-db (2.11.0-1+b1) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-1_amd64.deb ... Unpacking m4 (1.4.19-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. 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Selecting previously unselected package cpp-12-aarch64-linux-gnu. Preparing to unpack .../020-cpp-12-aarch64-linux-gnu_12.2.0-9cross2_amd64.deb ... Unpacking cpp-12-aarch64-linux-gnu (12.2.0-9cross2) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../021-cpp-aarch64-linux-gnu_4%3a12.2.0-1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:12.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../022-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package gcc-12-cross-base. Preparing to unpack .../023-gcc-12-cross-base_12.2.0-9cross2_all.deb ... Unpacking gcc-12-cross-base (12.2.0-9cross2) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../024-libc6-arm64-cross_2.36-3cross1_all.deb ... Unpacking libc6-arm64-cross (2.36-3cross1) ... Selecting previously unselected package libgcc-s1-arm64-cross. 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Setting up libsub-override-perl (0.09-4) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-4) ... Setting up readline-common (8.2-1.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1) ... Setting up liblocale-gettext-perl (1.07-4+b3) ... Setting up libgcc-s1-arm64-cross (12.2.0-9cross2) ... Setting up libatomic1-arm64-cross (12.2.0-9cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up liblsan0-arm64-cross (12.2.0-9cross2) ... Setting up libgomp1-arm64-cross (12.2.0-9cross2) ... Setting up gettext (0.21-9) ... Setting up cpp-12-aarch64-linux-gnu (12.2.0-9cross2) ... Setting up libtool (2.4.7-4) ... Setting up libreadline8:amd64 (8.2-1.1) ... Setting up bc (1.07.1-3+b1) ... Setting up libhwasan0-arm64-cross (12.2.0-9cross2) ... Setting up libc6-dev-arm64-cross (2.36-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (12.2.0-9cross2) ... Setting up libpython3.10-stdlib:amd64 (3.10.8-3) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:12.2.0-1) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8) ... Setting up libasan8-arm64-cross (12.2.0-9cross2) ... Setting up libtsan2-arm64-cross (12.2.0-9cross2) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3.10 (3.10.8-3) ... Setting up libubsan1-arm64-cross (12.2.0-9cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.10.6-1) ... Setting up man-db (2.11.0-1+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-12-dev-arm64-cross (12.2.0-9cross2) ... Setting up gcc-12-aarch64-linux-gnu (12.2.0-9cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-pkg-resources (65.5.0-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up gcc-aarch64-linux-gnu (4:12.2.0-1) ... Setting up python3-setuptools (65.5.0-1) ... Setting up meson (0.64.0-1) ... Setting up debhelper (13.10.1) ... Setting up libstdc++-12-dev-arm64-cross (12.2.0-9cross2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-aarch64-linux-gnu (12.2.0-9cross2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:12.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-arm64 (12.9) ... Setting up libgcc-s1:arm64 (12.2.0-9) ... Setting up libc6:arm64 (2.36-4) ... Setting up libffi8:arm64 (3.4.4-1) ... Setting up libhwasan0:arm64 (12.2.0-9) ... Setting up libtasn1-6:arm64 (4.19.0-2) ... Setting up libbz2-1.0:arm64 (1.0.8-5+b1) ... Setting up libdb5.3:arm64 (5.3.28+dfsg1-0.10) ... Setting up libstdc++6:arm64 (12.2.0-9) ... Setting up liblsan0:arm64 (12.2.0-9) ... Setting up libitm1:arm64 (12.2.0-9) ... Setting up libtinfo6:arm64 (6.3+20220423-2) ... 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Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up libhogweed6:arm64 (3.8.1-2) ... Setting up libssw-dev:arm64 (1.1-13) ... Setting up libgnutls30:arm64 (3.7.8-4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:arm64 (1.20-1+b1) ... Setting up libsmithwaterman-dev:arm64 (0.0+git20160702.2610e25-12+b1) ... Setting up libtirpc3:arm64 (1.3.3+ds-1) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-2+b1) ... Setting up libtirpc-dev:arm64 (1.3.3+ds-1) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libcurl3-gnutls:arm64 (7.86.0-1) ... Setting up libcurl4-gnutls-dev:arm64 (7.86.0-1) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.36-4) ... Setting up libhts3:arm64 (1.16+ds-3) ... Setting up samtools:arm64 (1.16.1-1) ... Setting up libstdc++-11-dev:arm64 (11.3.0-8) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up libtabixpp0:arm64 (1.1.1-1) ... Setting up libseqlib2:arm64 (1.2.0+dfsg-9) ... 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Processing triggers for libc-bin (2.36-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) amd64 (x86_64) Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.9 g++-11_11.3.0-8 g++-12_12.2.0-9 gcc-11_11.3.0-8 gcc-12_12.2.0-9 libc6-dev_2.36-4 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-arm64-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-arm64-cross_12.2.0-9cross2 linux-libc-dev_6.0.7-1 Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-2+b1 bc_1.07.1-3+b1 binutils_2.39-8 binutils-aarch64-linux-gnu_2.39-8 binutils-common_2.39-8 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-1.1+b1 bsdutils_1:2.38.1-1.1+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-9 cpp-12-aarch64-linux-gnu_12.2.0-9cross2 cpp-aarch64-linux-gnu_4:12.2.0-1 cross-config_2.6.18+nmu2 crossbuild-essential-arm64_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9+b1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 fakeroot_1.30.1-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-9 g++-12-aarch64-linux-gnu_12.2.0-9cross2 g++-aarch64-linux-gnu_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-9 gcc-12-aarch64-linux-gnu_12.2.0-9cross2 gcc-12-aarch64-linux-gnu-base_12.2.0-9cross2 gcc-12-base_12.2.0-9 gcc-12-cross-base_12.2.0-9cross2 gcc-9-base_9.5.0-2+b2 gcc-aarch64-linux-gnu_4:12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-1 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan6_11.3.0-8 libasan8_12.2.0-9 libasan8-arm64-cross_12.2.0-9cross2 libatomic1_12.2.0-9 libatomic1-arm64-cross_12.2.0-9cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b1 libbamtools-dev_2.5.2+dfsg-2 libbamtools2.5.2_2.5.2+dfsg-2 libbinutils_2.39-8 libblkid1_2.38.1-1.1+b1 libbrotli1_1.0.9-2+b4 libbwa-dev_0.7.17-7 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-4 libc-dev-bin_2.36-4 libc6_2.36-4 libc6-arm64-cross_2.36-3cross1 libc6-dev_2.36-4 libc6-dev-arm64-cross_2.36-3cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-9 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.30-1 libcrypt1_1:4.4.30-1 libctf-nobfd0_2.39-8 libctf0_2.39-8 libcurl3-gnutls_7.86.0-1 libcurl4-gnutls-dev_7.86.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10.1 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1 libdisorder0_0.0.2+git20130809.8062ee1-4+b1 libdpkg-perl_1.21.9 libelf1_0.187-4 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.30.1-1 libfastahack-dev_1.0.0+dfsg-10 libfastahack0_1.0.0+dfsg-10 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-2 libfml-dev_0.1+git20190320.b499514-1+b1 libfml0_0.1+git20190320.b499514-1+b1 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-9 libgcc-12-dev-arm64-cross_12.2.0-9cross2 libgcc-s1_12.2.0-9 libgcc-s1-arm64-cross_12.2.0-9cross2 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libglib2.0-0_2.74.1-2 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-9 libgomp1-arm64-cross_12.2.0-9cross2 libgpg-error0_1.46-1 libgprofng0_2.39-8 libgssapi-krb5-2_1.20-1+b1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libhwasan0_12.2.0-9 libhwasan0-arm64-cross_12.2.0-9cross2 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-9 libitm1-arm64-cross_12.2.0-9cross2 libjsoncpp-dev_1.9.5-4 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1+b1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1+b1 libkrb5support0_1.20-1+b1 libldap-2.5-0_2.5.13+dfsg-2+b1 liblocale-gettext-perl_1.07-4+b3 liblsan0_12.2.0-9 liblsan0-arm64-cross_12.2.0-9cross2 liblz4-1_1.9.4-1 liblzma-dev_5.2.7-0.1 liblzma5_5.2.7-0.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1.1+b1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1+b1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.6-3 libpsl5_0.21.0-1.2 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.8-3 libpython3.10-stdlib_3.10.8-3 libquadmath0_12.2.0-9 libreadline8_8.2-1.1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol2_3.4-2 libseqlib-dev_1.2.0+dfsg-9 libseqlib2_1.2.0+dfsg-9 libsmartcols1_2.38.1-1.1+b1 libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1 libsmithwaterman0_0.0+git20160702.2610e25-12+b1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1+b1 libssh2-1_1.10.0-3+b1 libssl3_3.0.7-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-arm64-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-arm64-cross_12.2.0-9cross2 libsub-override-perl_0.09-4 libsystemd0_252.1-1 libtabixpp-dev_1.1.1-1 libtabixpp0_1.1.1-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-8 libtsan2_12.2.0-9 libtsan2-arm64-cross_12.2.0-9cross2 libubsan1_12.2.0-9 libubsan1-arm64-cross_12.2.0-9cross2 libuchardet0_0.0.7-1 libudev1_252.1-1 libunistring2_1.0-2 libuuid1_2.38.1-1.1+b1 libvcflib-dev_1.0.3+dfsg-2 libvcflib1_1.0.3+dfsg-2 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.7-1 linux-libc-dev-arm64-cross_6.0.6-2cross1 login_1:4.12.3+dfsg1-3 logsave_1.46.6~rc1-1+b1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1+b1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 meson_0.64.0-1 mount_2.38.1-1.1+b1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 ninja-build_1.11.1-1 passwd_1:4.12.3+dfsg1-3 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-distutils_3.10.8-1 python3-lib2to3_3.10.8-1 python3-minimal_3.10.6-1 python3-pkg-resources_65.5.0-1 python3-setuptools_65.5.0-1 python3.10_3.10.8-3 python3.10-minimal_3.10.8-3 readline-common_8.2-1.1 rpcsvc-proto_1.4.2-4 samtools_1.16.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 ucf_3.0043 usrmerge_33 util-linux_2.38.1-1.1+b1 util-linux-extra_2.38.1-1.1+b1 xz-utils_5.2.7-0.1 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.6-2 Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel , libvcflib-tools , debhelper Package-List: freebayes deb science optional arch=any Checksums-Sha1: 2513323e336e02b5cc83d43c9f5b725579c0b75a 2898209 freebayes_1.3.6.orig.tar.gz 504b332ace3ff066468126e5559e058877bdfa0c 11440 freebayes_1.3.6-2.debian.tar.xz Checksums-Sha256: d668c0b433cc0f11498ace10e48d72a7f0f40ca23b391b72e975ffafd1c13044 2898209 freebayes_1.3.6.orig.tar.gz 2fbada9aaa038dc048d99a28e91201f4b57f240a5119fd01e83bdf3224e63872 11440 freebayes_1.3.6-2.debian.tar.xz Files: e8fe2bf8bb0139bb313744e5fb8e4105 2898209 freebayes_1.3.6.orig.tar.gz cd9f68ade2865de3a9d15cab4fce73fe 11440 freebayes_1.3.6-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNhIusRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtExzQ/7ByePtBFO7BmSz+2yth7yzj4R9ki7MfIB gqDj+ED4wmsVi2dsdA+21ap7+lbWYvJ43m41fMqPGneDpQql0LVrqQhvimfMHR9k ZkpdlmptasFcYuitAQwWq1tCuOBprjKkcUK91sfu/U9Sax9v1QkLb2iG1eW4hWEG j6aZRTY2EDB0Dmu9YXQ7MgwCQ2DO7qDLK9dDh6HkbpSgXH8vnnamU8uUg0FhgcWI L/wx/s0tiOcKEpJQTwCEc38lSgRRmEDREkyGebRy+qwXZS5Ny768UtrTr0tD9E7P EkXVm6toysJkzHeHxQV2ZE7IvThQGrwSqnD1uIp54PbVNw6VOR7wy0etAw7Z4nGB 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User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-828b1d5e-abc6-4625-b128-57fa2ed1c132 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package freebayes dpkg-buildpackage: info: source version 1.3.6-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=meson --builddir=build dh_auto_clean -O--buildsystem=meson -O--builddir=build dh_autoreconf_clean -O--buildsystem=meson -O--builddir=build dh_clean -O--buildsystem=meson -O--builddir=build debian/rules binary-arch dh binary-arch --buildsystem=meson --builddir=build dh_update_autotools_config -a -O--buildsystem=meson -O--builddir=build dh_autoreconf -a -O--buildsystem=meson -O--builddir=build dh_auto_configure -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --cross-file /<>/debian/.debhelper/generated/_source/meson-cross-file.conf DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 0.64.0 Source dir: /<> Build dir: /<>/build Build type: cross build Project name: freebayes Project version: 1.3.6 C compiler for the host machine: /usr/bin/aarch64-linux-gnu-gcc (gcc 12.2.0 "aarch64-linux-gnu-gcc (Debian 12.2.0-9) 12.2.0") C linker for the host machine: /usr/bin/aarch64-linux-gnu-gcc ld.bfd 2.39 C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 12.2.0 "aarch64-linux-gnu-g++ (Debian 12.2.0-9) 12.2.0") C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.39 C compiler for the build machine: cc (gcc 12.2.0 "cc (Debian 12.2.0-9) 12.2.0") C linker for the build machine: cc ld.bfd 2.39 C++ compiler for the build machine: c++ (gcc 12.2.0 "c++ (Debian 12.2.0-9) 12.2.0") C++ linker for the build machine: c++ ld.bfd 2.39 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: aarch64 Host machine cpu: arm64 Target machine cpu family: aarch64 Target machine cpu: arm64 Found pkg-config: /usr/bin/aarch64-linux-gnu-pkg-config (0.29.2) Run-time dependency zlib found: YES 1.2.13 Run-time dependency liblzma found: YES 5.2.7 Run-time dependency threads found: YES Library tabixpp found: YES Run-time dependency htslib found: YES 1.16 Library tabixpp found: YES Run-time dependency libvcflib found: YES 1.0 Run-time dependency libseqlib found: YES 1.0 Compiler for C++ supports arguments -fpermissive: YES Compiler for C++ supports arguments -Wno-reorder: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Program prove found: YES (/usr/bin/prove) Build targets in project: 3 freebayes 1.3.6 User defined options Cross files : /<>/debian/.debhelper/generated/_source/meson-cross-file.conf buildtype : plain libdir : lib/aarch64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload Found ninja-1.11.1 at /usr/bin/ninja WARNING: Running the setup command as `meson [options]` instead of `meson setup [options]` is ambiguous and deprecated. dh_auto_build -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 ninja -j1 -v [1/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Allele.cpp.o -MF libfreebayes_common.a.p/src_Allele.cpp.o.d -o libfreebayes_common.a.p/src_Allele.cpp.o -c ../src/Allele.cpp ../src/Allele.cpp: In member function ‘const short int Allele::currentQuality() const’: ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_GENOTYPE’ not handled in switch [-Wswitch] 160 | switch (this->type) { | ^ ../src/Allele.cpp:160:12: warning: enumeration value ‘ALLELE_NULL’ not handled in switch [-Wswitch] [2/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp In file included from ../src/AlleleParser.h:32, from ../src/AlleleParser.cpp:1: /usr/include/vcflib/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/12/string:48, from /usr/aarch64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/aarch64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/aarch64-linux-gnu/include/c++/12/ios:42, from /usr/aarch64-linux-gnu/include/c++/12/ostream:38, from /usr/aarch64-linux-gnu/include/c++/12/iostream:39, from ../src/AlleleParser.h:4: /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [3/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_BedReader.cpp.o -MF libfreebayes_common.a.p/src_BedReader.cpp.o.d -o libfreebayes_common.a.p/src_BedReader.cpp.o -c ../src/BedReader.cpp [4/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Bias.cpp.o -MF libfreebayes_common.a.p/src_Bias.cpp.o.d -o libfreebayes_common.a.p/src_Bias.cpp.o -c ../src/Bias.cpp [5/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_CNV.cpp.o -MF libfreebayes_common.a.p/src_CNV.cpp.o.d -o libfreebayes_common.a.p/src_CNV.cpp.o -c ../src/CNV.cpp [6/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Contamination.cpp.o -MF libfreebayes_common.a.p/src_Contamination.cpp.o.d -o libfreebayes_common.a.p/src_Contamination.cpp.o -c ../src/Contamination.cpp [7/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_DataLikelihood.cpp.o -MF libfreebayes_common.a.p/src_DataLikelihood.cpp.o.d -o libfreebayes_common.a.p/src_DataLikelihood.cpp.o -c ../src/DataLikelihood.cpp In file included from ../src/AlleleParser.h:32, from ../src/DataLikelihood.h:20, from ../src/DataLikelihood.cpp:1: /usr/include/vcflib/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/12/string:48, from /usr/aarch64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/aarch64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/aarch64-linux-gnu/include/c++/12/ios:42, from /usr/aarch64-linux-gnu/include/c++/12/ostream:38, from /usr/aarch64-linux-gnu/include/c++/12/iostream:39, from ../src/DataLikelihood.h:4: /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [8/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Dirichlet.cpp.o -MF libfreebayes_common.a.p/src_Dirichlet.cpp.o.d -o libfreebayes_common.a.p/src_Dirichlet.cpp.o -c ../src/Dirichlet.cpp [9/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Ewens.cpp.o -MF libfreebayes_common.a.p/src_Ewens.cpp.o.d -o libfreebayes_common.a.p/src_Ewens.cpp.o -c ../src/Ewens.cpp [10/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_FBFasta.cpp.o -MF libfreebayes_common.a.p/src_FBFasta.cpp.o.d -o libfreebayes_common.a.p/src_FBFasta.cpp.o -c ../src/FBFasta.cpp ../src/FBFasta.cpp: In member function ‘std::string FB::FastaReference::getRawSequence(std::string)’: ../src/FBFasta.cpp:273:20: warning: pointer ‘seq’ used after ‘void free(void*)’ [-Wuse-after-free] 273 | s.resize((pend - pbegin)/sizeof(char)); | ~~~~~^~~~~~~~ ../src/FBFasta.cpp:272:9: note: call to ‘void free(void*)’ here 272 | free(seq); | ~~~~^~~~~ ../src/FBFasta.cpp: In member function ‘std::string FB::FastaReference::getRawSubSequence(std::string, int, int)’: ../src/FBFasta.cpp:316:20: warning: pointer ‘seq’ used after ‘void free(void*)’ [-Wuse-after-free] 316 | s.resize((pend - pbegin)/sizeof(char)); | ~~~~~^~~~~~~~ ../src/FBFasta.cpp:315:9: note: call to ‘void free(void*)’ here 315 | free(seq); | ~~~~^~~~~ [11/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Genotype.cpp.o -MF libfreebayes_common.a.p/src_Genotype.cpp.o.d -o libfreebayes_common.a.p/src_Genotype.cpp.o -c ../src/Genotype.cpp [12/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_IndelAllele.cpp.o -MF libfreebayes_common.a.p/src_IndelAllele.cpp.o.d -o libfreebayes_common.a.p/src_IndelAllele.cpp.o -c ../src/IndelAllele.cpp [13/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_LeftAlign.cpp.o -MF libfreebayes_common.a.p/src_LeftAlign.cpp.o.d -o libfreebayes_common.a.p/src_LeftAlign.cpp.o -c ../src/LeftAlign.cpp [14/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Marginals.cpp.o -MF libfreebayes_common.a.p/src_Marginals.cpp.o.d -o libfreebayes_common.a.p/src_Marginals.cpp.o -c ../src/Marginals.cpp In file included from ../src/AlleleParser.h:32, from ../src/ResultData.h:10, from ../src/Marginals.h:7, from ../src/Marginals.cpp:1: /usr/include/vcflib/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/12/bits/refwrap.h:39, from /usr/aarch64-linux-gnu/include/c++/12/vector:66, from ../src/Marginals.h:4: /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [15/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Multinomial.cpp.o -MF libfreebayes_common.a.p/src_Multinomial.cpp.o.d -o libfreebayes_common.a.p/src_Multinomial.cpp.o -c ../src/Multinomial.cpp [16/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_NonCall.cpp.o -MF libfreebayes_common.a.p/src_NonCall.cpp.o.d -o libfreebayes_common.a.p/src_NonCall.cpp.o -c ../src/NonCall.cpp [17/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Parameters.cpp.o -MF libfreebayes_common.a.p/src_Parameters.cpp.o.d -o libfreebayes_common.a.p/src_Parameters.cpp.o -c ../src/Parameters.cpp [18/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Result.cpp.o -MF libfreebayes_common.a.p/src_Result.cpp.o.d -o libfreebayes_common.a.p/src_Result.cpp.o -c ../src/Result.cpp [19/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_ResultData.cpp.o -MF libfreebayes_common.a.p/src_ResultData.cpp.o.d -o libfreebayes_common.a.p/src_ResultData.cpp.o -c ../src/ResultData.cpp In file included from ../src/AlleleParser.h:32, from ../src/ResultData.h:10, from ../src/ResultData.cpp:1: /usr/include/vcflib/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/12/bits/refwrap.h:39, from /usr/aarch64-linux-gnu/include/c++/12/vector:66, from ../src/ResultData.h:4: /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [20/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Sample.cpp.o -MF libfreebayes_common.a.p/src_Sample.cpp.o.d -o libfreebayes_common.a.p/src_Sample.cpp.o -c ../src/Sample.cpp [21/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -MF libfreebayes_common.a.p/src_SegfaultHandler.cpp.o.d -o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -c ../src/SegfaultHandler.cpp [22/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Utility.cpp.o -MF libfreebayes_common.a.p/src_Utility.cpp.o.d -o libfreebayes_common.a.p/src_Utility.cpp.o -c ../src/Utility.cpp In file included from ../ttmath/ttmathint.h:48, from ../ttmath/ttmathbig.h:46, from ../ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25: ../ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25: ../ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../src/Utility.cpp:381:48: ../ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ [23/27] rm -f libfreebayes_common.a && /usr/bin/aarch64-linux-gnu-ar csrDT libfreebayes_common.a libfreebayes_common.a.p/src_Allele.cpp.o libfreebayes_common.a.p/src_AlleleParser.cpp.o libfreebayes_common.a.p/src_BedReader.cpp.o libfreebayes_common.a.p/src_Bias.cpp.o libfreebayes_common.a.p/src_CNV.cpp.o libfreebayes_common.a.p/src_Contamination.cpp.o libfreebayes_common.a.p/src_DataLikelihood.cpp.o libfreebayes_common.a.p/src_Dirichlet.cpp.o libfreebayes_common.a.p/src_Ewens.cpp.o libfreebayes_common.a.p/src_FBFasta.cpp.o libfreebayes_common.a.p/src_Genotype.cpp.o libfreebayes_common.a.p/src_IndelAllele.cpp.o libfreebayes_common.a.p/src_LeftAlign.cpp.o libfreebayes_common.a.p/src_Marginals.cpp.o libfreebayes_common.a.p/src_Multinomial.cpp.o libfreebayes_common.a.p/src_NonCall.cpp.o libfreebayes_common.a.p/src_Parameters.cpp.o libfreebayes_common.a.p/src_Result.cpp.o libfreebayes_common.a.p/src_ResultData.cpp.o libfreebayes_common.a.p/src_Sample.cpp.o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o libfreebayes_common.a.p/src_Utility.cpp.o [24/27] /usr/bin/aarch64-linux-gnu-g++ -Ifreebayes.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ freebayes.p/src_freebayes.cpp.o -MF freebayes.p/src_freebayes.cpp.o.d -o freebayes.p/src_freebayes.cpp.o -c ../src/freebayes.cpp In file included from ../src/AlleleParser.h:32, from ../src/freebayes.cpp:29: /usr/include/vcflib/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/12/string:48, from /usr/aarch64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/aarch64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/aarch64-linux-gnu/include/c++/12/ios:42, from /usr/aarch64-linux-gnu/include/c++/12/ostream:38, from /usr/aarch64-linux-gnu/include/c++/12/iostream:39, from ../src/freebayes.cpp:9: /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [25/27] /usr/bin/aarch64-linux-gnu-g++ -o freebayes freebayes.p/src_freebayes.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so /lib/aarch64-linux-gnu/libtabixpp.so /lib/aarch64-linux-gnu/libvcflib.so /lib/aarch64-linux-gnu/libsmithwaterman.so /lib/aarch64-linux-gnu/libdisorder.so /lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a -Wl,--end-group [26/27] /usr/bin/aarch64-linux-gnu-g++ -Ibamleftalign.p -I. -I.. -I../src -I../ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ bamleftalign.p/src_bamleftalign.cpp.o -MF bamleftalign.p/src_bamleftalign.cpp.o.d -o bamleftalign.p/src_bamleftalign.cpp.o -c ../src/bamleftalign.cpp [27/27] /usr/bin/aarch64-linux-gnu-g++ -o bamleftalign bamleftalign.p/src_bamleftalign.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so /lib/aarch64-linux-gnu/libvcflib.so /lib/aarch64-linux-gnu/libsmithwaterman.so /lib/aarch64-linux-gnu/libdisorder.so /lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a /lib/aarch64-linux-gnu/libtabixpp.so -Wl,--end-group create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson -O--builddir=build dh_prep -a -O--buildsystem=meson -O--builddir=build dh_auto_install --destdir=debian/freebayes/ -a -O--buildsystem=meson -O--builddir=build cd build && DESTDIR=/<>/debian/freebayes LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing freebayes to /<>/debian/freebayes/usr/bin Installing bamleftalign to /<>/debian/freebayes/usr/bin dh_install -a -O--buildsystem=meson -O--builddir=build dh_installdocs -a -O--buildsystem=meson -O--builddir=build dh_installchangelogs -a -O--buildsystem=meson -O--builddir=build dh_installexamples -a -O--buildsystem=meson -O--builddir=build dh_installsystemduser -a -O--buildsystem=meson -O--builddir=build dh_perl -a -O--buildsystem=meson -O--builddir=build dh_link -a -O--buildsystem=meson -O--builddir=build dh_strip_nondeterminism -a -O--buildsystem=meson -O--builddir=build dh_compress -a -O--buildsystem=meson -O--builddir=build dh_fixperms -a -O--buildsystem=meson -O--builddir=build dh_missing -a -O--buildsystem=meson -O--builddir=build dh_dwz -a -O--buildsystem=meson -O--builddir=build dh_strip -a -O--buildsystem=meson -O--builddir=build dh_makeshlibs -a -O--buildsystem=meson -O--builddir=build dh_shlibdeps -a -O--buildsystem=meson -O--builddir=build dh_installdeb -a -O--buildsystem=meson -O--builddir=build dh_gencontrol -a -O--buildsystem=meson -O--builddir=build dpkg-gencontrol: warning: package freebayes: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package freebayes: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=meson -O--builddir=build dh_builddeb -a -O--buildsystem=meson -O--builddir=build dpkg-deb: building package 'freebayes' in '../freebayes_1.3.6-2_arm64.deb'. dpkg-deb: building package 'freebayes-dbgsym' in '../freebayes-dbgsym_1.3.6-2_arm64.deb'. dpkg-genbuildinfo --build=any -O../freebayes_1.3.6-2_arm64.buildinfo dpkg-genchanges --build=any -O../freebayes_1.3.6-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-09T12:37:10Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ freebayes_1.3.6-2_arm64.changes: -------------------------------- Format: 1.8 Date: Tue, 01 Nov 2022 14:38:51 +0100 Source: freebayes Binary: freebayes freebayes-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.3.6-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: freebayes - Bayesian haplotype-based polymorphism discovery and genotyping Changes: freebayes (1.3.6-2) unstable; urgency=medium . * install scripts (+ python3 dependency accordingly) * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: d16ee386e51e7da343638a40b9709a9f9c8d0cb6 6441676 freebayes-dbgsym_1.3.6-2_arm64.deb 27e5f3b178defc0fae67c83fbcae8baad5d61d33 7459 freebayes_1.3.6-2_arm64.buildinfo 4e2663ed9ae28401a1516541a91f8ac6811511a3 1414704 freebayes_1.3.6-2_arm64.deb Checksums-Sha256: e19bd0a178442df9e9f308c720b9cce069b4295101109bbb19ee36a7057c440f 6441676 freebayes-dbgsym_1.3.6-2_arm64.deb 78a9e87c9e6460c65befc5cc512c42bd0e2d8a1942af022450af8fcb6d8fbd5e 7459 freebayes_1.3.6-2_arm64.buildinfo 1d3a754d2fe452fd763a6c1acfad387c101df52f7ad262e14c9ab784c9da4f96 1414704 freebayes_1.3.6-2_arm64.deb Files: f06e4d6e3aead6522b1c5c40f3e4b72d 6441676 debug optional freebayes-dbgsym_1.3.6-2_arm64.deb 9fb302dcf9e537a68bc1550d776a321a 7459 science optional freebayes_1.3.6-2_arm64.buildinfo 4a48768639305ed722aa96b5c95d8010 1414704 science optional freebayes_1.3.6-2_arm64.deb /<>/freebayes_1.3.6-2_arm64.changes.new could not be renamed to /<>/freebayes_1.3.6-2_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: freebayes Binary: freebayes freebayes-dbgsym Architecture: arm64 Version: 1.3.6-2 Checksums-Md5: f06e4d6e3aead6522b1c5c40f3e4b72d 6441676 freebayes-dbgsym_1.3.6-2_arm64.deb 4a48768639305ed722aa96b5c95d8010 1414704 freebayes_1.3.6-2_arm64.deb Checksums-Sha1: d16ee386e51e7da343638a40b9709a9f9c8d0cb6 6441676 freebayes-dbgsym_1.3.6-2_arm64.deb 4e2663ed9ae28401a1516541a91f8ac6811511a3 1414704 freebayes_1.3.6-2_arm64.deb Checksums-Sha256: e19bd0a178442df9e9f308c720b9cce069b4295101109bbb19ee36a7057c440f 6441676 freebayes-dbgsym_1.3.6-2_arm64.deb 1d3a754d2fe452fd763a6c1acfad387c101df52f7ad262e14c9ab784c9da4f96 1414704 freebayes_1.3.6-2_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 09 Nov 2022 12:37:10 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-9), autotools-dev (= 20220109.1), base-files (= 12.3), base-passwd (= 3.6.1), bash (= 5.2-2+b1), bc (= 1.07.1-3+b1), binutils (= 2.39-8), binutils-common (= 2.39-8), binutils-x86-64-linux-gnu (= 2.39-8), bsdextrautils (= 2.38.1-1.1+b1), bsdutils (= 1:2.38.1-1.1+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.2.0-1), cpp-11 (= 11.3.0-8), cpp-12 (= 12.2.0-9), dash (= 0.5.11+git20210903+057cd650a4ed-9), debconf (= 1.5.79), debhelper (= 13.10.1), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9+b1), dpkg-dev (= 1.21.9), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-9), gcc (= 4:12.2.0-1), gcc-11 (= 11.3.0-8), gcc-11-base (= 11.3.0-8), gcc-12 (= 12.2.0-9), gcc-12-base (= 12.2.0-9), gettext (= 0.21-9), gettext-base (= 0.21-9), grep (= 3.8-3), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-8), libasan8 (= 12.2.0-9), libatomic1 (= 12.2.0-9), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1+b1), libbamtools-dev (= 2.5.2+dfsg-2), libbamtools2.5.2 (= 2.5.2+dfsg-2), libbinutils (= 2.39-8), libblkid1 (= 2.38.1-1.1+b1), libbrotli1 (= 1.0.9-2+b4), libbwa-dev (= 0.7.17-7), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.36-4), libc-dev-bin (= 2.36-4), libc6 (= 2.36-4), libc6-dev (= 2.36-4), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-9), libcom-err2 (= 1.46.6~rc1-1+b1), libcrypt-dev (= 1:4.4.30-1), libcrypt1 (= 1:4.4.30-1), libctf-nobfd0 (= 2.39-8), libctf0 (= 2.39-8), libcurl3-gnutls (= 7.86.0-1), libcurl4-gnutls-dev (= 7.86.0-1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.10.1), 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Description: debug symbols for freebayes Build-Ids: 035919d2d5ed51fe885e0d05e398108e1511e210 490cd09b6dfe3dea0116c134f4a8afe5a3f4dd59 drwxr-xr-x root/root 0 2022-11-01 13:38 ./ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/lib/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/lib/debug/.build-id/03/ -rw-r--r-- root/root 5765552 2022-11-01 13:38 ./usr/lib/debug/.build-id/03/5919d2d5ed51fe885e0d05e398108e1511e210.debug drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/lib/debug/.build-id/49/ -rw-r--r-- root/root 613808 2022-11-01 13:38 ./usr/lib/debug/.build-id/49/0cd09b6dfe3dea0116c134f4a8afe5a3f4dd59.debug drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 279432 2022-11-01 13:38 ./usr/lib/debug/.dwz/aarch64-linux-gnu/freebayes.debug drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/share/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-11-01 13:38 ./usr/share/doc/freebayes-dbgsym -> freebayes freebayes_1.3.6-2_arm64.deb --------------------------- new Debian package, version 2.0. size 1414704 bytes: control archive=2580 bytes. 860 bytes, 17 lines control 5545 bytes, 66 lines md5sums Package: freebayes Version: 1.3.6-2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 3831 Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.5), libseqlib2 (>= 1.2.0+dfsg), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.3+dfsg), zlib1g (>= 1:1.1.4), python3 Recommends: parallel Section: science Priority: optional Homepage: https://github.com/ekg/freebayes Description: Bayesian haplotype-based polymorphism discovery and genotyping FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. drwxr-xr-x root/root 0 2022-11-01 13:38 ./ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/bin/ -rwxr-xr-x root/root 1195928 2022-11-01 13:38 ./usr/bin/bamleftalign -rwxr-xr-x root/root 1785616 2022-11-01 13:38 ./usr/bin/freebayes drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/share/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-11-01 13:38 ./usr/share/doc/freebayes/ -rw-r--r-- root/root 10293 2022-01-21 09:38 ./usr/share/doc/freebayes/README.md.gz -rw-r--r-- root/root 278 2022-11-01 13:38 ./usr/share/doc/freebayes/README.test -rw-r--r-- root/root 83 2022-11-01 13:38 ./usr/share/doc/freebayes/README.test_data -rw-r--r-- root/root 3317 2022-01-21 09:38 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The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 49.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.7-1 [1400 kB] Get:4 http://localhost:3142/debian sid/main amd64 ca-certificates all 20211016 [156 kB] Get:5 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:6 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB] Get:7 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1 [564 kB] Get:8 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1 [948 kB] Get:9 http://localhost:3142/debian sid/main amd64 iso-codes all 4.12.0-1 [2888 kB] Get:10 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:11 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:12 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:13 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:14 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-1+b4 [15.4 kB] Get:15 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:16 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:18 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:19 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:20 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:23 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:25 http://localhost:3142/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:26 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.16-1 [90.3 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.79-1+b1 [101 kB] Get:28 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.54-1 [224 kB] Get:29 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:30 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.13-2 [19.4 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:32 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:33 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get:34 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:35 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.928-3 [9724 B] Get:36 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:38 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:39 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.32-1+b1 [130 kB] Get:40 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:41 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:42 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:43 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:44 http://localhost:3142/debian sid/main amd64 libexporter-tiny-perl all 1.004003-1 [39.0 kB] Get:45 http://localhost:3142/debian sid/main amd64 liblist-moreutils-xs-perl amd64 0.430-3+b1 [42.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:48 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:49 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:50 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:53 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:56 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:58 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:59 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:62 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:64 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:65 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:73 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:74 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:75 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.075-1 [220 kB] Get:76 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:77 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB] Get:80 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:83 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:84 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.58-3 [36.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:95 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:98 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-2+b1 [11.2 kB] Get:100 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:101 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.124-1 [56.1 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:104 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.001+ds-1+b1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.001+ds-1+b1 [105 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:110 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.26-1 [54.4 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.27-1+b1 [28.8 kB] Get:112 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:114 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b2 [12.6 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:118 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-1+b4 [20.0 kB] Get:119 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:121 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.84+ds-1+b1 [34.7 kB] Get:122 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:123 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:124 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:125 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:126 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:127 http://localhost:3142/debian sid/main amd64 lintian all 2.115.3 [1417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (105 MB/s) Selecting previously unselected package netbase. (Reading database ... 24056 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.7-1_amd64.deb ... Unpacking openssl (3.0.7-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../004-libassuan0_2.5.5-5_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.40-1_amd64.deb ... Unpacking gpgconf (2.2.40-1) ... Selecting previously unselected package gpg. Preparing to unpack .../006-gpg_2.2.40-1_amd64.deb ... Unpacking gpg (2.2.40-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../007-iso-codes_4.12.0-1_all.deb ... Unpacking iso-codes (4.12.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../008-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../009-libapt-pkg-perl_0.1.40+b2_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40+b2) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../010-libb-hooks-op-check-perl_0.22-2+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../011-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl. 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Preparing to unpack .../126-sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b2) ... Setting up liblz1:amd64 (1.13-4) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b4) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.13-2) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2+b1) ... Setting up libcpanel-json-xs-perl:amd64 (4.32-1+b1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-27) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.84+ds-1+b1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.5-5) ... Setting up libconfig-tiny-perl (2.28-2) ... Setting up libsereal-encoder-perl:amd64 (5.001+ds-1+b1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.928-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004004-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.26-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Setting up liblist-moreutils-xs-perl (0.430-3+b1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:amd64 (0.26-2+b1) ... Setting up libsyntax-keyword-try-perl (0.27-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1+b2) ... Setting up libpath-tiny-perl (0.124-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.40-1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.004003-1) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.7-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.001+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.16-1) ... Setting up iso-codes (4.12.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.40-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b4) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.79-1+b1) ... Setting up libio-socket-ssl-perl (2.075-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-3) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.115.3) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.36-4) ... Processing triggers for man-db (2.11.0-1+b1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 101656 Build-Time: 83 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 20 Job: freebayes_1.3.6-2 Lintian: pass Machine Architecture: amd64 Package: freebayes Package-Time: 115 Source-Version: 1.3.6-2 Space: 101656 Status: successful Version: 1.3.6-2 -------------------------------------------------------------------------------- Finished at 2022-11-09T12:37:10Z Build needed 00:01:55, 101656k disk space