sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | freebayes 1.3.7-1 (arm64) Tue, 26 Dec 2023 14:58:20 +0000 | +==============================================================================+ Package: freebayes Version: 1.3.7-1 Source Version: 1.3.7-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-2b2dac8b-1092-4214-9dbb-5d06904013a0' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-X1cuB4/resolver-Yx7zZj' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-26-1404.09-F-2023-12-26-0204.59.pdiff [16.8 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-26-1404.09-F-2023-12-26-0204.59.pdiff [18.8 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-26-1404.09-F-2023-12-26-0204.59.pdiff [16.8 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-26-1404.09-F-2023-12-26-0204.59.pdiff [18.8 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9493 kB] Fetched 9854 kB in 4s (2745 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'freebayes' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/freebayes.git Please use: git clone https://salsa.debian.org/med-team/freebayes.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2916 kB of source archives. Get:1 http://localhost:3142/debian sid/main freebayes 1.3.7-1 (dsc) [2185 B] Get:2 http://localhost:3142/debian sid/main freebayes 1.3.7-1 (tar) [2902 kB] Get:3 http://localhost:3142/debian sid/main freebayes 1.3.7-1 (diff) [11.8 kB] Fetched 2916 kB in 1s (2016 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/freebayes-X1cuB4/freebayes-1.3.7' with '<>' I: NOTICE: Log filtering will replace 'build/freebayes-X1cuB4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.9+dfsg-1~), libtabixpp-dev, libseqlib-dev, bc, samtools, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.9+dfsg-1~), libtabixpp-dev, libseqlib-dev, bc, samtools, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [914 B] Get:5 copy:/<>/apt_archive ./ Packages [909 B] Fetched 2432 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.2:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp25:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libncurses6:arm64 libncursesw6 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libpipeline1 libpkgconf3 libpsl5:arm64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl3:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5:arm64 libvcflib-dev:arm64 libvcflib2:arm64 libwfa2-0:arm64 libwfa2-dev:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson netbase ninja-build pkg-config:arm64 pkgconf:arm64 pkgconf-bin po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.11 python3.11-minimal readline-common samtools:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 libcurl4-doc:arm64 libgnutls28-dev:arm64 libidn-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 liblzma-doc:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.11-venv python3.11-doc binfmt-support readline-doc cwltool:arm64 Recommended packages: curl | wget | lynx ca-certificates:arm64 libarchive-cpio-perl krb5-locales:arm64 libldap-common:arm64 libgpm2:arm64 libgpm2 publicsuffix:arm64 libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbamtools-dev:arm64 libbamtools2.5.2:arm64 libbrotli1:arm64 libbwa-dev:arm64 libbz2-1.0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libelf1 libexpat1 libfastahack-dev:arm64 libfastahack0:arm64 libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfml-dev:arm64 libfml0:arm64 libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp-dev:arm64 libjsoncpp25:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.5-0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libncurses6:arm64 libncursesw6 libnettle8:arm64 libnghttp2-14:arm64 libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64 libpipeline1 libpkgconf3 libpsl5:arm64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libseqlib-dev:arm64 libseqlib2:arm64 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsqlite3-0 libssh2-1:arm64 libssl3:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtabixpp-dev:arm64 libtabixpp0:arm64 libtasn1-6:arm64 libtinfo6:arm64 libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5:arm64 libvcflib-dev:arm64 libvcflib2:arm64 libwfa2-0:arm64 libwfa2-dev:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types meson netbase ninja-build pkg-config:arm64 pkgconf:arm64 pkgconf-bin po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.11 python3.11-minimal readline-common samtools:arm64 sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 119 MB of archives. After this operation, 482 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1000 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.7-2 [816 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.7-2 [2035 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20231209-1 [135 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:12 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.44.2-1 [882 kB] Get:13 http://localhost:3142/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.7-2 [1822 kB] Get:14 http://localhost:3142/debian sid/main amd64 python3.11 amd64 3.11.7-2 [590 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:16 http://localhost:3142/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:17 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:18 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2 [314 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2 [105 kB] Get:20 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2 [42.8 kB] Get:21 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:22 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:23 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:24 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-2 [89.1 kB] Get:25 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:26 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:27 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:28 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:29 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:30 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:31 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:32 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:33 http://localhost:3142/debian sid/main amd64 bc amd64 1.07.1-3+b1 [110 kB] Get:34 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.41.50.20231214-1 [3369 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[9892 B] Get:45 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 13.2.0-7cross2 [2407 kB] Get:46 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 13.2.0-7cross2 [1068 kB] Get:47 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 13.2.0-7cross2 [2278 kB] Get:48 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 13.2.0-7cross2 [575 kB] Get:49 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 13.2.0-7cross2 [980 kB] Get:50 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 13.2.0-7cross2 [1119 kB] Get:51 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-arm64-cross all 13.2.0-7cross2 [2226 kB] Get:52 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [19.2 MB] Get:53 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:13.2.0-2 [1468 B] Get:54 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 6.5.8-1cross1 [1990 kB] Get:55 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.37-12cross1 [1427 kB] Get:56 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-arm64-cross all 13.2.0-7cross2 [2138 kB] Get:57 http://localhost:3142/debian sid/main amd64 g++-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [10.7 MB] Get:58 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:13.2.0-2 [1176 B] Get:59 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:60 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:62 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b1 [692 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:68 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:70 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:72 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:73 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:74 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.10 [3484 B] Get:75 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.9 [82.3 kB] Get:76 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:77 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:78 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:79 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:80 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:81 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:82 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1 [176 kB] Get:83 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:84 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:85 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:86 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:87 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.9 [956 kB] Get:88 http://localhost:3142/debian sid/main arm64 gcc-11-base arm64 11.4.0-7 [40.3 kB] Get:89 http://localhost:3142/debian sid/main arm64 gcc-13-base arm64 13.2.0-9 [41.5 kB] Get:90 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 13.2.0-9 [40.9 kB] Get:91 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.37-13 [2316 kB] Get:92 http://localhost:3142/debian sid/main arm64 libasan6 arm64 11.4.0-7 [1951 kB] Get:93 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 13.2.0-9 [10.2 kB] Get:94 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 13.2.0-9 [622 kB] Get:95 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.3.dfsg-3 [83.7 kB] Get:96 http://localhost:3142/debian sid/main arm64 libbamtools2.5.2 arm64 2.5.2+dfsg-5 [141 kB] Get:97 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.36-2 [90.3 kB] Get:98 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-2 [121 kB] Get:99 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-5 [32.5 kB] Get:100 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.0-2+b1 [19.9 kB] Get:101 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-5 [79.9 kB] Get:102 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2 [8844 B] Get:103 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.1.4-2 [1835 kB] Get:104 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-5 [315 kB] Get:105 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-5 [124 kB] Get:106 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.4+ds-1 [77.9 kB] Get:107 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-3 [37.5 kB] Get:108 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [192 kB] Get:109 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-3 [66.3 kB] Get:110 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.37-13 [1433 kB] Get:111 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3 [915 kB] Get:112 http://localhost:3142/debian sid/main arm64 libbamtools-dev arm64 2.5.2+dfsg-5 [212 kB] Get:113 http://localhost:3142/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b1 [293 kB] Get:114 http://localhost:3142/debian sid/main arm64 libbwa-dev arm64 0.7.17-7+b3 [147 kB] Get:115 http://localhost:3142/debian sid/main arm64 libbz2-1.0 arm64 1.0.8-5+b1 [47.5 kB] Get:116 http://localhost:3142/debian sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2 [531 kB] Get:117 http://localhost:3142/debian sid/main arm64 libnettle8 arm64 3.9.1-2 [300 kB] Get:118 http://localhost:3142/debian sid/main arm64 libhogweed6 arm64 3.9.1-2 [323 kB] Get:119 http://localhost:3142/debian sid/main arm64 libunistring5 arm64 1.1-2 [424 kB] Get:120 http://localhost:3142/debian sid/main arm64 libidn2-0 arm64 2.3.4-1+b1 [124 kB] Get:121 http://localhost:3142/debian sid/main arm64 libffi8 arm64 3.4.4-2 [20.8 kB] Get:122 http://localhost:3142/debian sid/main arm64 libp11-kit0 arm64 0.25.3-4 [400 kB] Get:123 http://localhost:3142/debian sid/main arm64 libtasn1-6 arm64 4.19.0-3 [45.8 kB] Get:124 http://localhost:3142/debian sid/main arm64 libgnutls30 arm64 3.8.2-1 [1333 kB] Get:125 http://localhost:3142/debian sid/main arm64 libdb5.3 arm64 5.3.28+dfsg2-4 [625 kB] Get:126 http://localhost:3142/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-4 [20.0 kB] Get:127 http://localhost:3142/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-4 [55.3 kB] Get:128 http://localhost:3142/debian sid/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get:129 http://localhost:3142/debian sid/main arm64 libnghttp2-14 arm64 1.58.0-1 [70.2 kB] Get:130 http://localhost:3142/debian sid/main arm64 libpsl5 arm64 0.21.2-1+b1 [59.0 kB] Get:131 http://localhost:3142/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:132 http://localhost:3142/debian sid/main arm64 libssh2-1 arm64 1.11.0-3 [206 kB] Get:133 http://localhost:3142/debian sid/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [256 kB] Get:134 http://localhost:3142/debian sid/main arm64 libcurl3-gnutls arm64 8.5.0-1 [394 kB] Get:135 http://localhost:3142/debian sid/main arm64 libcurl4-gnutls-dev arm64 8.5.0-1 [510 kB] Get:136 http://localhost:3142/debian sid/main arm64 libdeflate0 arm64 1.18-1 [39.1 kB] Get:137 http://localhost:3142/debian sid/main arm64 libdeflate-dev arm64 1.18-1 [47.6 kB] Get:138 http://localhost:3142/debian sid/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4+b1 [4880 B] Get:139 http://localhost:3142/debian sid/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-4+b1 [4856 B] Get:140 http://localhost:3142/debian sid/main arm64 libfastahack0 arm64 1.0.0+dfsg-11 [24.3 kB] Get:141 http://localhost:3142/debian sid/main arm64 libfastahack-dev arm64 1.0.0+dfsg-11 [26.8 kB] Get:142 http://localhost:3142/debian sid/main arm64 libfml0 arm64 0.1+git20190320.b499514-1+b1 [65.9 kB] Get:143 http://localhost:3142/debian sid/main arm64 libfml-dev arm64 0.1+git20190320.b499514-1+b1 [79.5 kB] Get:144 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 13.2.0-9 [118 kB] Get:145 http://localhost:3142/debian sid/main arm64 libitm1 arm64 13.2.0-9 [23.9 kB] Get:146 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 13.2.0-9 [1069 kB] Get:147 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.4.0-7 [1957 kB] Get:148 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 13.2.0-9 [981 kB] Get:149 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 13.2.0-9 [1120 kB] Get:150 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.4.0-7 [935 kB] Get:151 http://localhost:3142/debian sid/main arm64 libhtscodecs2 arm64 1.6.0-1 [71.3 kB] Get:152 http://localhost:3142/debian sid/main arm64 liblzma5 arm64 5.4.5-0.3 [233 kB] Get:153 http://localhost:3142/debian sid/main arm64 libhts3 arm64 1.18+ds-1 [407 kB] Get:154 http://localhost:3142/debian sid/main arm64 liblzma-dev arm64 5.4.5-0.3 [288 kB] Get:155 http://localhost:3142/debian sid/main arm64 libhts-dev arm64 1.18+ds-1 [1583 kB] Get:156 http://localhost:3142/debian sid/main arm64 libjsoncpp25 arm64 1.9.5-6 [70.9 kB] Get:157 http://localhost:3142/debian sid/main arm64 libjsoncpp-dev arm64 1.9.5-6 [24.5 kB] Get:158 http://localhost:3142/debian sid/main arm64 libtinfo6 arm64 6.4+20231209-1 [334 kB] Get:159 http://localhost:3142/debian sid/main arm64 libncurses6 arm64 6.4+20231209-1 [95.6 kB] Get:160 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:161 http://localhost:3142/debian sid/main arm64 libssw0 arm64 1.1-14 [19.2 kB] Get:162 http://localhost:3142/debian sid/main arm64 libseqlib2 arm64 1.2.0+dfsg-11 [144 kB] Get:163 http://localhost:3142/debian sid/main arm64 libssw-dev arm64 1.1-14 [22.5 kB] Get:164 http://localhost:3142/debian sid/main arm64 libseqlib-dev arm64 1.2.0+dfsg-11 [208 kB] Get:165 http://localhost:3142/debian sid/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12+b1 [32.7 kB] Get:166 http://localhost:3142/debian sid/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-12+b1 [38.4 kB] Get:167 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.4.0-7 [1942 kB] Get:168 http://localhost:3142/debian sid/main arm64 libtabixpp0 arm64 1.1.2-1 [9120 B] Get:169 http://localhost:3142/debian sid/main arm64 libtabixpp-dev arm64 1.1.2-1 [8756 B] Get:170 http://localhost:3142/debian sid/main arm64 libwfa2-0 arm64 2.3.3-2 [54.4 kB] Get:171 http://localhost:3142/debian sid/main arm64 libvcflib2 arm64 1.0.9+dfsg1-3 [161 kB] Get:172 http://localhost:3142/debian sid/main arm64 libwfa2-dev arm64 2.3.3-2 [73.7 kB] Get:173 http://localhost:3142/debian sid/main arm64 libvcflib-dev arm64 1.0.9+dfsg1-3 [77.6 kB] Get:174 http://localhost:3142/debian sid/main amd64 ninja-build amd64 1.11.1-2 [142 kB] Get:175 http://localhost:3142/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:176 http://localhost:3142/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:177 http://localhost:3142/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:178 http://localhost:3142/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:179 http://localhost:3142/debian sid/main amd64 meson all 1.3.0-2 [596 kB] Get:180 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:181 http://localhost:3142/debian sid/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get:182 http://localhost:3142/debian sid/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get:183 http://localhost:3142/debian sid/main arm64 samtools arm64 1.19-1 [614 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 119 MB in 5s (24.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16230 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.7-2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.7-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_amd64.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:amd64 (3.11.7-2) ... Setting up libexpat1:amd64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 16560 files and directories currently installed.) 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Setting up libsqlite3-0:amd64 (3.44.2-1) ... Setting up libmagic1:amd64 (1:5.45-2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up binutils-aarch64-linux-gnu (2.41.50.20231214-1) ... Setting up file (1:5.45-2) ... Setting up libyaml-perl (1.30-2) ... Setting up ninja-build (1.11.1-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up gcc-13-base:arm64 (13.2.0-9) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up libc6-arm64-cross (2.37-12cross1) ... Setting up autopoint (0.21-14) ... Setting up libitm1-arm64-cross (13.2.0-7cross2) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libncursesw6:amd64 (6.4+20231209-1) ... Setting up autoconf (2.71-3) ... Setting up libbwa-dev:arm64 (0.7.17-7+b3) ... Setting up linux-libc-dev-arm64-cross (6.5.8-1cross1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up netbase (6.4) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.190-1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b1) ... Setting up liblocale-gettext-perl (1.07-6) ... Setting up libgcc-s1-arm64-cross (13.2.0-7cross2) ... Setting up libatomic1-arm64-cross (13.2.0-7cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (13.2.0-7cross2) ... Setting up libgomp1-arm64-cross (13.2.0-7cross2) ... Setting up gettext (0.21-14) ... 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Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.7-2) ... Setting up debhelper (13.11.9) ... Setting up python3 (3.11.6-1) ... 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Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231214-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-arm64-cross_13.2.0-7cross2 linux-libc-dev_6.6.8-1 Package versions: adduser_3.137 apt_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 bc_1.07.1-3+b1 binutils_2.41.50.20231214-1 binutils-aarch64-linux-gnu_2.41.50.20231214-1 binutils-common_2.41.50.20231214-1 binutils-x86-64-linux-gnu_2.41.50.20231214-1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.4-2+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-aarch64-linux-gnu_13.2.0-7cross2 cpp-aarch64-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-arm64_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-aarch64-linux-gnu_13.2.0-7cross2 g++-aarch64-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-aarch64-linux-gnu_13.2.0-7cross2 gcc-13-aarch64-linux-gnu-base_13.2.0-7cross2 gcc-13-base_13.2.0-9 gcc-13-cross-base_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-aarch64-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-4 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-arm64-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-arm64-cross_13.2.0-7cross2 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbamtools-dev_2.5.2+dfsg-5 libbamtools2.5.2_2.5.2+dfsg-5 libbinutils_2.41.50.20231214-1 libblkid1_2.39.3-2 libbrotli1_1.1.0-2+b1 libbwa-dev_0.7.17-7+b3 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-arm64-cross_2.37-12cross1 libc6-dev_2.37-13 libc6-dev-arm64-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41.50.20231214-1 libctf0_2.41.50.20231214-1 libcurl3-gnutls_8.5.0-1 libcurl4-gnutls-dev_8.5.0-1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1 libdisorder0_0.0.2+git20130809.8062ee1-4+b1 libdpkg-perl_1.22.2 libelf1_0.190-1 libexpat1_2.5.0-2 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1 libfastahack-dev_1.0.0+dfsg-11 libfastahack0_1.0.0+dfsg-11 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfml-dev_0.1+git20190320.b499514-1+b1 libfml0_0.1+git20190320.b499514-1+b1 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-9 libgcc-13-dev-arm64-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-arm64-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-arm64-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231214-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libhwasan0_13.2.0-9 libhwasan0-arm64-cross_13.2.0-7cross2 libicu72_72.1-4 libidn2-0_2.3.4-1+b1 libio-string-perl_1.08-4 libisl23_0.26-3 libitm1_13.2.0-9 libitm1-arm64-cross_13.2.0-7cross2 libjansson4_2.14-2 libjsoncpp-dev_1.9.5-6 libjsoncpp25_1.9.5-6 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libldap-2.5-0_2.5.13+dfsg-5 liblocale-gettext-perl_1.07-6 liblsan0_13.2.0-9 liblsan0-arm64-cross_13.2.0-7cross2 liblz4-1_1.9.4-1 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses6_6.4+20231209-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libpsl5_0.21.2-1+b1 libpython3-stdlib_3.11.6-1 libpython3.11-minimal_3.11.7-2 libpython3.11-stdlib_3.11.7-2 libquadmath0_13.2.0-9 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+b1 libselinux1_3.5-1+b1 libsemanage-common_3.5-1 libsemanage2_3.5-1+b1 libsepol2_3.5-2 libseqlib-dev_1.2.0+dfsg-11 libseqlib2_1.2.0+dfsg-11 libsframe1_2.41.50.20231214-1 libsmartcols1_2.39.3-2 libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1 libsmithwaterman0_0.0+git20160702.2610e25-12+b1 libsqlite3-0_3.44.2-1 libss2_1.47.0-2+b1 libssh2-1_1.11.0-3 libssl3_3.1.4-2 libssw-dev_1.1-14 libssw0_1.1-14 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-arm64-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.2-2 libtabixpp-dev_1.1.2-1 libtabixpp0_1.1.2-1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-9 libtsan2-arm64-cross_13.2.0-7cross2 libubsan1_13.2.0-9 libubsan1-arm64-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255.2-2 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-2 libvcflib-dev_1.0.9+dfsg1-3 libvcflib2_1.0.9+dfsg1-3 libwfa2-0_2.3.3-2 libwfa2-dev_2.3.3-2 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b1 libxxhash0_0.8.2-2 libyaml-perl_1.30-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.8-1 linux-libc-dev-arm64-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 media-types_10.1.0 meson_1.3.0-2 mount_2.39.3-2 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 ninja-build_1.11.1-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-10 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 python3_3.11.6-1 python3-distutils_3.11.5-1 python3-lib2to3_3.11.5-1 python3-minimal_3.11.6-1 python3-pkg-resources_68.1.2-2 python3-setuptools_68.1.2-2 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 samtools_1.19-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.4 tzdata_2023c-11 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-2 util-linux-extra_2.39.3-2 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.7-1 Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.9+dfsg-1~), libtabixpp-dev, libseqlib-dev, bc, samtools, parallel , libvcflib-tools , debhelper Package-List: freebayes deb science optional arch=any Checksums-Sha1: 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CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.R1k9p31YaW/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-2b2dac8b-1092-4214-9dbb-5d06904013a0 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package freebayes dpkg-buildpackage: info: source version 1.3.7-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=meson --builddir=build dh_auto_clean -O--buildsystem=meson -O--builddir=build dh_autoreconf_clean -O--buildsystem=meson -O--builddir=build dh_clean -O--buildsystem=meson -O--builddir=build debian/rules binary-arch dh binary-arch --buildsystem=meson --builddir=build dh_update_autotools_config -a -O--buildsystem=meson -O--builddir=build dh_autoreconf -a -O--buildsystem=meson -O--builddir=build dh_auto_configure -a -O--buildsystem=meson -O--builddir=build cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 --cross-file /<>/debian/.debhelper/generated/_source/meson-cross-file.conf DEPRECATION: "pkgconfig" entry is deprecated and should be replaced by "pkg-config" DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 1.3.0 Source dir: /<> Build dir: /<>/build Build type: cross build Project name: freebayes Project version: 1.3.6 C compiler for the host machine: /usr/bin/aarch64-linux-gnu-gcc (gcc 13.2.0 "aarch64-linux-gnu-gcc (Debian 13.2.0-7) 13.2.0") C linker for the host machine: /usr/bin/aarch64-linux-gnu-gcc ld.bfd 2.41.50.20231214 C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 13.2.0 "aarch64-linux-gnu-g++ (Debian 13.2.0-7) 13.2.0") C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.41.50.20231214 C compiler for the build machine: cc (gcc 13.2.0 "cc (Debian 13.2.0-9) 13.2.0") C linker for the build machine: cc ld.bfd 2.41.50.20231214 C++ compiler for the build machine: c++ (gcc 13.2.0 "c++ (Debian 13.2.0-9) 13.2.0") C++ linker for the build machine: c++ ld.bfd 2.41.50.20231214 Build machine cpu family: x86_64 Build machine cpu: x86_64 Host machine cpu family: aarch64 Host machine cpu: arm64 Target machine cpu family: aarch64 Target machine cpu: arm64 Found pkg-config: YES (/usr/bin/aarch64-linux-gnu-pkg-config) 1.8.1 Run-time dependency zlib found: YES 1.3 Run-time dependency liblzma found: YES 5.4.5 Run-time dependency threads found: YES Library tabixpp found: YES Run-time dependency htslib found: YES 1.18 Library tabixpp found: YES Run-time dependency libvcflib found: YES 1.0 Run-time dependency libseqlib found: YES 1.0 Compiler for C++ supports arguments -fpermissive: YES Compiler for C++ supports arguments -Wno-reorder: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Program prove found: YES (/usr/bin/prove) Build targets in project: 3 freebayes 1.3.6 User defined options Cross files : /<>/debian/.debhelper/generated/_source/meson-cross-file.conf buildtype : plain libdir : lib/aarch64-linux-gnu localstatedir : /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload python.bytecompile: -1 Found ninja-1.11.1 at /usr/bin/ninja dh_auto_build -a -O--buildsystem=meson -O--builddir=build cd build && LC_ALL=C.UTF-8 ninja -j1 -v [1/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Allele.cpp.o -MF libfreebayes_common.a.p/src_Allele.cpp.o.d -o libfreebayes_common.a.p/src_Allele.cpp.o -c ../src/Allele.cpp [2/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp In file included from ../src/AlleleParser.h:32, from ../src/AlleleParser.cpp:1: /usr/include/vcflib/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/string:49, from /usr/aarch64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/aarch64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/aarch64-linux-gnu/include/c++/13/ios:44, from /usr/aarch64-linux-gnu/include/c++/13/ostream:40, from /usr/aarch64-linux-gnu/include/c++/13/iostream:41, from ../src/AlleleParser.h:4: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [3/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_BedReader.cpp.o -MF libfreebayes_common.a.p/src_BedReader.cpp.o.d -o libfreebayes_common.a.p/src_BedReader.cpp.o -c ../src/BedReader.cpp [4/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Bias.cpp.o -MF libfreebayes_common.a.p/src_Bias.cpp.o.d -o libfreebayes_common.a.p/src_Bias.cpp.o -c ../src/Bias.cpp [5/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_CNV.cpp.o -MF libfreebayes_common.a.p/src_CNV.cpp.o.d -o libfreebayes_common.a.p/src_CNV.cpp.o -c ../src/CNV.cpp [6/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Contamination.cpp.o -MF libfreebayes_common.a.p/src_Contamination.cpp.o.d -o libfreebayes_common.a.p/src_Contamination.cpp.o -c ../src/Contamination.cpp [7/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_DataLikelihood.cpp.o -MF libfreebayes_common.a.p/src_DataLikelihood.cpp.o.d -o libfreebayes_common.a.p/src_DataLikelihood.cpp.o -c ../src/DataLikelihood.cpp In file included from ../src/AlleleParser.h:32, from ../src/DataLikelihood.h:20, from ../src/DataLikelihood.cpp:1: /usr/include/vcflib/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/string:49, from /usr/aarch64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/aarch64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/aarch64-linux-gnu/include/c++/13/ios:44, from /usr/aarch64-linux-gnu/include/c++/13/ostream:40, from /usr/aarch64-linux-gnu/include/c++/13/iostream:41, from ../src/DataLikelihood.h:4: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [8/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Dirichlet.cpp.o -MF libfreebayes_common.a.p/src_Dirichlet.cpp.o.d -o libfreebayes_common.a.p/src_Dirichlet.cpp.o -c ../src/Dirichlet.cpp [9/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Ewens.cpp.o -MF libfreebayes_common.a.p/src_Ewens.cpp.o.d -o libfreebayes_common.a.p/src_Ewens.cpp.o -c ../src/Ewens.cpp [10/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_FBFasta.cpp.o -MF libfreebayes_common.a.p/src_FBFasta.cpp.o.d -o libfreebayes_common.a.p/src_FBFasta.cpp.o -c ../src/FBFasta.cpp ../src/FBFasta.cpp: In member function ‘std::string FB::FastaReference::getRawSequence(std::string)’: ../src/FBFasta.cpp:273:20: warning: pointer ‘pbegin’ used after ‘void free(void*)’ [-Wuse-after-free] 273 | s.resize((pend - pbegin)/sizeof(char)); | ~~~~~^~~~~~~~ ../src/FBFasta.cpp:272:9: note: call to ‘void free(void*)’ here 272 | free(seq); | ~~~~^~~~~ ../src/FBFasta.cpp: In member function ‘std::string FB::FastaReference::getRawSubSequence(std::string, int, int)’: ../src/FBFasta.cpp:316:20: warning: pointer ‘pbegin’ used after ‘void free(void*)’ [-Wuse-after-free] 316 | s.resize((pend - pbegin)/sizeof(char)); | ~~~~~^~~~~~~~ ../src/FBFasta.cpp:315:9: note: call to ‘void free(void*)’ here 315 | free(seq); | ~~~~^~~~~ [11/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Genotype.cpp.o -MF libfreebayes_common.a.p/src_Genotype.cpp.o.d -o libfreebayes_common.a.p/src_Genotype.cpp.o -c ../src/Genotype.cpp [12/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_IndelAllele.cpp.o -MF libfreebayes_common.a.p/src_IndelAllele.cpp.o.d -o libfreebayes_common.a.p/src_IndelAllele.cpp.o -c ../src/IndelAllele.cpp [13/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_LeftAlign.cpp.o -MF libfreebayes_common.a.p/src_LeftAlign.cpp.o.d -o libfreebayes_common.a.p/src_LeftAlign.cpp.o -c ../src/LeftAlign.cpp [14/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Marginals.cpp.o -MF libfreebayes_common.a.p/src_Marginals.cpp.o.d -o libfreebayes_common.a.p/src_Marginals.cpp.o -c ../src/Marginals.cpp In file included from ../src/AlleleParser.h:32, from ../src/ResultData.h:10, from ../src/Marginals.h:7, from ../src/Marginals.cpp:1: /usr/include/vcflib/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/refwrap.h:39, from /usr/aarch64-linux-gnu/include/c++/13/vector:68, from ../src/Marginals.h:4: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [15/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Multinomial.cpp.o -MF libfreebayes_common.a.p/src_Multinomial.cpp.o.d -o libfreebayes_common.a.p/src_Multinomial.cpp.o -c ../src/Multinomial.cpp [16/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_NonCall.cpp.o -MF libfreebayes_common.a.p/src_NonCall.cpp.o.d -o libfreebayes_common.a.p/src_NonCall.cpp.o -c ../src/NonCall.cpp [17/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Parameters.cpp.o -MF libfreebayes_common.a.p/src_Parameters.cpp.o.d -o libfreebayes_common.a.p/src_Parameters.cpp.o -c ../src/Parameters.cpp [18/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Result.cpp.o -MF libfreebayes_common.a.p/src_Result.cpp.o.d -o libfreebayes_common.a.p/src_Result.cpp.o -c ../src/Result.cpp [19/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_ResultData.cpp.o -MF libfreebayes_common.a.p/src_ResultData.cpp.o.d -o libfreebayes_common.a.p/src_ResultData.cpp.o -c ../src/ResultData.cpp In file included from ../src/AlleleParser.h:32, from ../src/ResultData.h:10, from ../src/ResultData.cpp:1: /usr/include/vcflib/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/refwrap.h:39, from /usr/aarch64-linux-gnu/include/c++/13/vector:68, from ../src/ResultData.h:4: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [20/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Sample.cpp.o -MF libfreebayes_common.a.p/src_Sample.cpp.o.d -o libfreebayes_common.a.p/src_Sample.cpp.o -c ../src/Sample.cpp [21/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -MF libfreebayes_common.a.p/src_SegfaultHandler.cpp.o.d -o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -c ../src/SegfaultHandler.cpp [22/27] /usr/bin/aarch64-linux-gnu-g++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Utility.cpp.o -MF libfreebayes_common.a.p/src_Utility.cpp.o.d -o libfreebayes_common.a.p/src_Utility.cpp.o -c ../src/Utility.cpp In file included from ../contrib/ttmath/ttmathint.h:48, from ../contrib/ttmath/ttmathbig.h:46, from ../contrib/ttmath/ttmath.h:58, from ../src/Utility.h:18, from ../src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../src/Utility.cpp:381:48: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../src/Utility.cpp:381:48: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44: ../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ [23/27] rm -f libfreebayes_common.a && /usr/bin/aarch64-linux-gnu-ar csrDT libfreebayes_common.a libfreebayes_common.a.p/src_Allele.cpp.o libfreebayes_common.a.p/src_AlleleParser.cpp.o libfreebayes_common.a.p/src_BedReader.cpp.o libfreebayes_common.a.p/src_Bias.cpp.o libfreebayes_common.a.p/src_CNV.cpp.o libfreebayes_common.a.p/src_Contamination.cpp.o libfreebayes_common.a.p/src_DataLikelihood.cpp.o libfreebayes_common.a.p/src_Dirichlet.cpp.o libfreebayes_common.a.p/src_Ewens.cpp.o libfreebayes_common.a.p/src_FBFasta.cpp.o libfreebayes_common.a.p/src_Genotype.cpp.o libfreebayes_common.a.p/src_IndelAllele.cpp.o libfreebayes_common.a.p/src_LeftAlign.cpp.o libfreebayes_common.a.p/src_Marginals.cpp.o libfreebayes_common.a.p/src_Multinomial.cpp.o libfreebayes_common.a.p/src_NonCall.cpp.o libfreebayes_common.a.p/src_Parameters.cpp.o libfreebayes_common.a.p/src_Result.cpp.o libfreebayes_common.a.p/src_ResultData.cpp.o libfreebayes_common.a.p/src_Sample.cpp.o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o libfreebayes_common.a.p/src_Utility.cpp.o [24/27] /usr/bin/aarch64-linux-gnu-g++ -Ifreebayes.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ freebayes.p/src_freebayes.cpp.o -MF freebayes.p/src_freebayes.cpp.o.d -o freebayes.p/src_freebayes.cpp.o -c ../src/freebayes.cpp In file included from ../src/AlleleParser.h:32, from ../src/freebayes.cpp:29: /usr/include/vcflib/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/aarch64-linux-gnu/include/c++/13/string:49, from /usr/aarch64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/aarch64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/aarch64-linux-gnu/include/c++/13/ios:44, from /usr/aarch64-linux-gnu/include/c++/13/ostream:40, from /usr/aarch64-linux-gnu/include/c++/13/iostream:41, from ../src/freebayes.cpp:9: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/include/vcflib/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [25/27] /usr/bin/aarch64-linux-gnu-g++ -o freebayes freebayes.p/src_freebayes.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so /lib/aarch64-linux-gnu/libtabixpp.so /lib/aarch64-linux-gnu/libvcflib.so /lib/aarch64-linux-gnu/libsmithwaterman.so /lib/aarch64-linux-gnu/libdisorder.so /lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a -Wl,--end-group [26/27] /usr/bin/aarch64-linux-gnu-g++ -Ibamleftalign.p -I. -I.. -I../src -I../contrib/ttmath -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ bamleftalign.p/src_bamleftalign.cpp.o -MF bamleftalign.p/src_bamleftalign.cpp.o.d -o bamleftalign.p/src_bamleftalign.cpp.o -c ../src/bamleftalign.cpp [27/27] /usr/bin/aarch64-linux-gnu-g++ -o bamleftalign bamleftalign.p/src_bamleftalign.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so /lib/aarch64-linux-gnu/libvcflib.so /lib/aarch64-linux-gnu/libsmithwaterman.so /lib/aarch64-linux-gnu/libdisorder.so /lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a /lib/aarch64-linux-gnu/libtabixpp.so -Wl,--end-group create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson -O--builddir=build dh_prep -a -O--buildsystem=meson -O--builddir=build dh_auto_install --destdir=debian/freebayes/ -a -O--buildsystem=meson -O--builddir=build cd build && DESTDIR=/<>/debian/freebayes LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing freebayes to /<>/debian/freebayes/usr/bin Installing bamleftalign to /<>/debian/freebayes/usr/bin dh_install -a -O--buildsystem=meson -O--builddir=build dh_installdocs -a -O--buildsystem=meson -O--builddir=build dh_installchangelogs -a -O--buildsystem=meson -O--builddir=build dh_installexamples -a -O--buildsystem=meson -O--builddir=build dh_installsystemduser -a -O--buildsystem=meson -O--builddir=build dh_perl -a -O--buildsystem=meson -O--builddir=build dh_link -a -O--buildsystem=meson -O--builddir=build dh_strip_nondeterminism -a -O--buildsystem=meson -O--builddir=build dh_compress -a -O--buildsystem=meson -O--builddir=build dh_fixperms -a -O--buildsystem=meson -O--builddir=build dh_missing -a -O--buildsystem=meson -O--builddir=build dh_dwz -a -O--buildsystem=meson -O--builddir=build dh_strip -a -O--buildsystem=meson -O--builddir=build dh_makeshlibs -a -O--buildsystem=meson -O--builddir=build dh_shlibdeps -a -O--buildsystem=meson -O--builddir=build dh_installdeb -a -O--buildsystem=meson -O--builddir=build dh_gencontrol -a -O--buildsystem=meson -O--builddir=build dpkg-gencontrol: warning: package freebayes: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package freebayes: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=meson -O--builddir=build dh_builddeb -a -O--buildsystem=meson -O--builddir=build dpkg-deb: building package 'freebayes' in '../freebayes_1.3.7-1_arm64.deb'. dpkg-deb: building package 'freebayes-dbgsym' in '../freebayes-dbgsym_1.3.7-1_arm64.deb'. dpkg-genbuildinfo --build=any -O../freebayes_1.3.7-1_arm64.buildinfo dpkg-genchanges --build=any -O../freebayes_1.3.7-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-26T15:00:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ freebayes_1.3.7-1_arm64.changes: -------------------------------- Format: 1.8 Date: Mon, 21 Aug 2023 13:22:14 +0200 Source: freebayes Binary: freebayes freebayes-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.3.7-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: freebayes - Bayesian haplotype-based polymorphism discovery and genotyping Changes: freebayes (1.3.7-1) unstable; urgency=medium . * Team Upload. . [ Andreas Tille ] * Bump versioned Build-Depends: libvcflib-dev (>= 1.0.9+dfsg-1~) * Do not build on i386 on Salsa CI . [ Michael R. Crusoe ] * d/control: applied fix for :unnecessary greater-than versioned dependency * d/copyright: update path for ttmath * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * d/rules: delete any by-products from testing Checksums-Sha1: 31a6d31e18208daa70d7066c7fef3c6e4206c23b 6417720 freebayes-dbgsym_1.3.7-1_arm64.deb 6df5ccc215668d30e0d58539cc105f2a54f71749 7638 freebayes_1.3.7-1_arm64.buildinfo 90b03d3eb8b34f5897f306366bf6b3f49ecdce49 1423004 freebayes_1.3.7-1_arm64.deb Checksums-Sha256: 63e3c482402d9dfafeb6b297391b0f5392bf43c7f7a8ad4f6009a72b9dce16cb 6417720 freebayes-dbgsym_1.3.7-1_arm64.deb b14849e42a9a0051bed0b44f2a03e864edca9c18479b0fc5e9ce1dc2f5863c3c 7638 freebayes_1.3.7-1_arm64.buildinfo 6b0b2fb563f1bc6e279efac3f000778e871d3e8f434ef321f78152be7e90567e 1423004 freebayes_1.3.7-1_arm64.deb Files: 6bfc1ac6f12212b0e0349c5b0b2ac96c 6417720 debug optional freebayes-dbgsym_1.3.7-1_arm64.deb 9518a054488815a761cdb43e599a6e3b 7638 science optional freebayes_1.3.7-1_arm64.buildinfo 1c813bf9195aeefdad22af8e9432c626 1423004 science optional freebayes_1.3.7-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: freebayes Binary: freebayes freebayes-dbgsym Architecture: arm64 Version: 1.3.7-1 Checksums-Md5: 6bfc1ac6f12212b0e0349c5b0b2ac96c 6417720 freebayes-dbgsym_1.3.7-1_arm64.deb 1c813bf9195aeefdad22af8e9432c626 1423004 freebayes_1.3.7-1_arm64.deb Checksums-Sha1: 31a6d31e18208daa70d7066c7fef3c6e4206c23b 6417720 freebayes-dbgsym_1.3.7-1_arm64.deb 90b03d3eb8b34f5897f306366bf6b3f49ecdce49 1423004 freebayes_1.3.7-1_arm64.deb Checksums-Sha256: 63e3c482402d9dfafeb6b297391b0f5392bf43c7f7a8ad4f6009a72b9dce16cb 6417720 freebayes-dbgsym_1.3.7-1_arm64.deb 6b0b2fb563f1bc6e279efac3f000778e871d3e8f434ef321f78152be7e90567e 1423004 freebayes_1.3.7-1_arm64.deb Build-Origin: Debian 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archive=644 bytes. 420 bytes, 12 lines control 299 bytes, 3 lines md5sums Package: freebayes-dbgsym Source: freebayes Version: 1.3.7-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 6480 Depends: freebayes (= 1.3.7-1) Section: debug Priority: optional Description: debug symbols for freebayes Build-Ids: 1016a9c575baba4f1bfbbd0eb178eee58b387a89 d8c7efa4302de1f83650ac3db13c313678f557cf drwxr-xr-x root/root 0 2023-08-21 11:22 ./ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/lib/debug/.build-id/10/ -rw-r--r-- root/root 5700632 2023-08-21 11:22 ./usr/lib/debug/.build-id/10/16a9c575baba4f1bfbbd0eb178eee58b387a89.debug drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/lib/debug/.build-id/d8/ -rw-r--r-- root/root 625744 2023-08-21 11:22 ./usr/lib/debug/.build-id/d8/c7efa4302de1f83650ac3db13c313678f557cf.debug drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 293880 2023-08-21 11:22 ./usr/lib/debug/.dwz/aarch64-linux-gnu/freebayes.debug drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-08-21 11:22 ./usr/share/doc/freebayes-dbgsym -> freebayes freebayes_1.3.7-1_arm64.deb --------------------------- new Debian package, version 2.0. size 1423004 bytes: control archive=2632 bytes. 863 bytes, 17 lines control 6204 bytes, 74 lines md5sums Package: freebayes Version: 1.3.7-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 3913 Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.5), libseqlib2 (>= 1.2.0+dfsg), libstdc++6 (>= 13.1), libtabixpp0 (>= 1.0.0), libvcflib2 (>= 1.0.9+dfsg1), zlib1g (>= 1:1.1.4), python3 Recommends: parallel Section: science Priority: optional Homepage: https://github.com/ekg/freebayes Description: Bayesian haplotype-based polymorphism discovery and genotyping FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. drwxr-xr-x root/root 0 2023-08-21 11:22 ./ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/bin/ -rwxr-xr-x root/root 1195928 2023-08-21 11:22 ./usr/bin/bamleftalign -rwxr-xr-x root/root 1851152 2023-08-21 11:22 ./usr/bin/freebayes drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/doc/freebayes/ -rw-r--r-- root/root 10293 2023-02-12 03:55 ./usr/share/doc/freebayes/README.md.gz -rw-r--r-- root/root 278 2021-01-28 10:06 ./usr/share/doc/freebayes/README.test -rw-r--r-- root/root 83 2021-01-28 10:06 ./usr/share/doc/freebayes/README.test_data -rw-r--r-- root/root 3576 2023-02-12 03:55 ./usr/share/doc/freebayes/RELEASE-NOTES.md -rw-r--r-- root/root 1774 2023-08-21 11:22 ./usr/share/doc/freebayes/changelog.Debian.gz -rw-r--r-- root/root 3202 2023-08-21 11:21 ./usr/share/doc/freebayes/copyright drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/doc/freebayes/examples/ -rw-r--r-- root/root 83 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/README.test_data drwxr-xr-x root/root 0 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/bash-tap/ drwxr-xr-x root/root 0 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/ -rw-r--r-- root/root 246 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/targets.bed -rw-r--r-- root/root 17 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/test.alt -rw-r--r-- root/root 230 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/test.bam -rw-r--r-- root/root 96 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/test.bam.bai -rw-r--r-- root/root 112 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/test.bed -rw-r--r-- root/root 17 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/test.ref -rw-r--r-- root/root 15 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/test.ref.fai -rw-r--r-- root/root 9618 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/data/test.vcf -rw-r--r-- root/root 109 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/freebayes-env.yaml drwxr-xr-x root/root 0 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/performance/ -rw-r--r-- root/root 1652 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/performance/benchmark.md -rw-r--r-- root/root 906 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/pipeline.sh drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/doc/freebayes/examples/regression/ -rw-r--r-- root/root 94 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/regression/README.md -rw-r--r-- root/root 287 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/runner.sh -rw-r--r-- root/root 2743 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/snakemake-freebayes-parallel.smk drwxr-xr-x root/root 0 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/splice/ -rw-r--r-- root/root 22589 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.bam -rw-r--r-- root/root 288 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.bam.bai -rw-r--r-- root/root 3801 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.fa -rw-r--r-- root/root 15 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.fa.fai drwxr-xr-x root/root 0 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/t/ -rw-r--r-- root/root 3648 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/t/00_region_and_target_handling.t -rw-r--r-- root/root 4908 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/t/01_call_variants.t -rw-r--r-- root/root 2947 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/t/01b_call_variants.t -rw-r--r-- root/root 2943 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/t/02_multi_bam.t -rw-r--r-- root/root 1488 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/t/03_reference_bases.t -rw-r--r-- root/root 246 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/targets.bed drwxr-xr-x root/root 0 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/test-simple-bash/ -rw-r--r-- root/root 17 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/test.alt -rw-r--r-- root/root 230 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/test.bam -rw-r--r-- root/root 96 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/test.bam.bai -rw-r--r-- root/root 112 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/test.bed -rw-r--r-- root/root 17 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/test.ref -rw-r--r-- root/root 15 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/test.ref.fai -rw-r--r-- root/root 550 2021-01-28 10:06 ./usr/share/doc/freebayes/examples/test.vcf drwxr-xr-x root/root 0 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/ -rw-r--r-- root/root 636 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/1read.bam -rw-r--r-- root/root 96 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/1read.bam.bai -rw-r--r-- root/root 287213 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam -rw-r--r-- root/root 96 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam.bai -rw-r--r-- root/root 155615 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.cram -rw-r--r-- root/root 16307 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.giab.vcf -rw-r--r-- root/root 287228 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam -rw-r--r-- root/root 96 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam.bai -rw-r--r-- root/root 12581 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/hla.fa -rw-r--r-- root/root 33 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/hla.fa.fai -rw-r--r-- root/root 2394 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/hla.vcf.gz -rw-r--r-- root/root 120 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/hla.vcf.gz.tbi -rw-r--r-- root/root 12565 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q with spaces.fa -rw-r--r-- root/root 16 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q with spaces.fa.fai -rw-r--r-- root/root 36 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q with spaces.regions -rw-r--r-- root/root 12565 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q.fa -rw-r--r-- root/root 16 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q.fa.fai -rw-r--r-- root/root 36 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q.regions -rw-r--r-- root/root 4168 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q.vcf.gz -rw-r--r-- root/root 102 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q.vcf.gz.tbi -rw-r--r-- root/root 2378 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz -rw-r--r-- root/root 91 2023-02-12 03:55 ./usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz.tbi -rw-r--r-- root/root 924 2021-01-28 10:06 ./usr/share/doc/freebayes/run-unit-test.gz drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/freebayes/ drwxr-xr-x root/root 0 2023-08-21 11:22 ./usr/share/freebayes/scripts/ -rw-r--r-- root/root 1034 2023-02-12 03:55 ./usr/share/freebayes/scripts/GenerateFreebayesRegions.R -rwxr-xr-x root/root 234 2023-02-12 03:55 ./usr/share/freebayes/scripts/bgziptabix -rwxr-xr-x root/root 1495 2023-02-12 03:55 ./usr/share/freebayes/scripts/coverage_to_regions.py -rwxr-xr-x root/root 2574 2023-02-12 03:55 ./usr/share/freebayes/scripts/fasta_generate_regions.py -rwxr-xr-x root/root 1558 2023-02-12 03:55 ./usr/share/freebayes/scripts/freebayes-parallel -rwxr-xr-x root/root 706 2023-02-12 03:55 ./usr/share/freebayes/scripts/generate_freebayes_region_scripts.sh -rw-r--r-- root/root 760 2023-08-21 11:22 ./usr/share/freebayes/scripts/sam_add_rg.pl -rw-r--r-- root/root 371 2023-02-12 03:55 ./usr/share/freebayes/scripts/samples.cnv -rw-r--r-- root/root 6414 2023-02-12 03:55 ./usr/share/freebayes/scripts/split_ref_by_bai_datasize.py -rwxr-xr-x root/root 839 2023-02-12 03:55 ./usr/share/freebayes/scripts/update_version.sh -rwxr-xr-x root/root 315 2023-02-12 03:55 ./usr/share/freebayes/scripts/vcffirstheader lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1496 B] Get:5 copy:/<>/apt_archive ./ Packages [1527 B] Fetched 3638 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 12.7 MB of archives. After this operation, 49.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 openssl amd64 3.1.4-2 [1426 kB] Get:3 http://localhost:3142/debian sid/main amd64 ca-certificates all 20230311 [153 kB] Get:4 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:6 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1 [564 kB] Get:7 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1 [949 kB] Get:8 http://localhost:3142/debian sid/main amd64 iso-codes all 4.15.0-1 [2906 kB] Get:9 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:10 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:11 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:13 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:14 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:15 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:16 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:18 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:19 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:20 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:22 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:23 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.21-1 [95.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.60-1 [219 kB] Get:27 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:28 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:29 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:30 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:31 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:32 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:33 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libencode-locale-perl all 1.05-3 [12.9 kB] Get:54 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:58 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:60 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:61 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:62 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:63 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:64 http://localhost:3142/debian 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http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:76 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:77 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:78 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:79 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:80 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:81 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:82 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-6 [37.8 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:85 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:86 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:87 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:88 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:90 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:92 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:93 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1 [12.5 kB] Get:96 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:97 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:98 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:99 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:100 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1 [43.0 kB] Get:101 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1 [99.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1 [102 kB] Get:104 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:105 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1 [60.3 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1 [28.8 kB] Get:107 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:108 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:109 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:110 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:111 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:113 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:114 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:115 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:116 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:117 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-6 [63.1 kB] Get:118 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:119 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:120 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:121 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:122 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.7 MB in 0s (101 MB/s) Selecting previously unselected package openssl. (Reading database ... 24651 files and directories currently installed.) Preparing to unpack .../000-openssl_3.1.4-2_amd64.deb ... Unpacking openssl (3.1.4-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../003-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.40-1.1_amd64.deb ... Unpacking gpgconf (2.2.40-1.1) ... Selecting previously unselected package gpg. Preparing to unpack .../005-gpg_2.2.40-1.1_amd64.deb ... Unpacking gpg (2.2.40-1.1) ... Selecting previously unselected package iso-codes. 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Selecting previously unselected package sbuild-build-depends-lintian-dummy:arm64. Preparing to unpack .../121-sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b2) ... Setting up liblz1:amd64 (1.13-6) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ... Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... 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Setting up libsereal-decoder-perl (5.004+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.21-1) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libio-socket-ssl-perl (2.084-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.60-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 102096 Build-Time: 89 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 21 Job: freebayes_1.3.7-1 Lintian: pass Machine Architecture: amd64 Package: freebayes Package-Time: 124 Source-Version: 1.3.7-1 Space: 102096 Status: successful Version: 1.3.7-1 -------------------------------------------------------------------------------- Finished at 2023-12-26T15:00:24Z Build needed 00:02:04, 102096k disk space