sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | fsa 1.15.9+dfsg-4 (mipsel) Thu, 23 Apr 2020 11:12:17 +0000 | +==============================================================================+ Package: fsa Version: 1.15.9+dfsg-4 Source Version: 1.15.9+dfsg-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-cae5af31-d955-4898-a6ae-bc277a3d228c' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-eEHqqY/resolver-NRUm0H' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-23-0801.14.pdiff [4182 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-23-0801.14.pdiff [4182 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-23-0801.14.pdiff [6233 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-23-0801.14.pdiff [6233 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [7937 kB] Fetched 8150 kB in 1s (5623 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fsa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fsa.git Please use: git clone https://salsa.debian.org/med-team/fsa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 574 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main fsa 1.15.9+dfsg-4 (dsc) [1966 B] Get:2 http://debian.oregonstate.edu/debian unstable/main fsa 1.15.9+dfsg-4 (tar) [559 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main fsa 1.15.9+dfsg-4 (diff) [13.1 kB] Fetched 574 kB in 0s (10.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fsa-eEHqqY/fsa-1.15.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-eEHqqY' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper (>= 11~), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [420 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1887 B in 0s (74.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:mipsel file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gawk gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libblkid1:mipsel libbsd0 libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libglib2.0-0:mipsel libgomp1:mipsel libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libmount1:mipsel libpcre2-8-0:mipsel libpcre3:mipsel libpipeline1 libreadline8 libselinux1:mipsel libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db mummer:mipsel po-debconf readline-common sensible-utils ucf zlib1g:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch wise:mipsel g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mipsel-linux-gnu gawk-doc gcc-9-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel libstdc++-9-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libglib2.0-data:mipsel shared-mime-info:mipsel xdg-user-dirs:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:mipsel file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gawk gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libblkid1:mipsel libbsd0 libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libglib2.0-0:mipsel libgomp1:mipsel libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libmount1:mipsel libpcre2-8-0:mipsel libpcre3:mipsel libpipeline1 libreadline8 libselinux1:mipsel libsigsegv2 libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db mummer:mipsel po-debconf readline-common sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 80.0 MB of archives. After this operation, 323 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 gawk amd64 1:5.0.1+dfsg-1 [610 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10-20200418-1 [196 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-10 [196 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.34-5cross6 [2309 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-4 [2629 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-10 [1699 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-10 [10.7 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.3.0-8cross1 [196 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6465 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-4.1 [16.7 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.30-2cross1 [1199 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10-20200324-1cross1 [46.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10-20200324-1cross1 [90.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10-20200324-1cross1 [6652 B] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.3.0-8cross1 [223 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6819 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1460 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10-20200324-1cross1 [395 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.4.19-1cross1 [1166 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.30-2cross1 [2274 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.3.0-8cross1 [1708 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [7051 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1176 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13 [184 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13 [1002 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10-20200418-1 [46.2 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.16-1 [113 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.30-4 [2419 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel libffi7 mipsel 3.3-4 [20.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libblkid1 mipsel 2.34-0.1 [188 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre2-8-0 mipsel 10.34-7 [152 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libselinux1 mipsel 3.0-1+b3 [79.4 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libmount1 mipsel 2.34-0.1 [191 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre3 mipsel 2:8.39-12+b1 [330 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libglib2.0-0 mipsel 2.64.2-1 [1154 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mipsel exonerate mipsel 2.4.0-4 [1424 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.13 [181 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10-20200418-1 [6712 B] Get:97 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.5.17-1 [1086 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.16-1 [134 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.30-4 [2271 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10-20200418-1 [92.2 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-10 [222 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10-20200418-1 [434 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-10 [1714 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel mummer mipsel 3.23+dfsg-5 [665 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.0 MB in 1s (82.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12628 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../2-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../4-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package readline-common. 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Selecting previously unselected package sbuild-build-depends-main-dummy:mipsel. Preparing to unpack .../94-sbuild-build-depends-main-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000002-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up gawk (1:5.0.1+dfsg-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:mipsel (5.5.17-1) ... Setting up libc6-mipsel-cross (2.30-2cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up m4 (1.4.18-4) ... Setting up file (1:5.38-4) ... Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:mipsel (10-20200418-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Setting up binutils-mipsel-linux-gnu (2.34-5cross6) ... Setting up libgomp1-mipsel-cross (10-20200324-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up autoconf (2.69-11.1) ... Setting up cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up linux-libc-dev-mipsel-cross (5.4.19-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-4) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mipsel (9.3.0-10) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-10) ... Setting up libc6-dev-mipsel-cross (2.30-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Setting up libatomic1-mipsel-cross (10-20200324-1cross1) ... Setting up help2man (1.47.13) ... Setting up libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-10) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-mipsel-cross (10-20200324-1cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.16-1) ... Setting up libgcc-s1:mipsel (10-20200418-1) ... Setting up libc6:mipsel (2.30-4) ... Setting up libcrypt-dev:mipsel (1:4.4.16-1) ... Setting up libc6-dev:mipsel (2.30-4) ... Setting up libblkid1:mipsel (2.34-0.1) ... Setting up libstdc++6:mipsel (10-20200418-1) ... Setting up libffi7:mipsel (3.3-4) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up libgomp1:mipsel (10-20200418-1) ... Setting up dh-autoreconf (19) ... Setting up libpcre3:mipsel (2:8.39-12+b1) ... Setting up libatomic1:mipsel (10-20200418-1) ... Setting up libpcre2-8-0:mipsel (10.34-7) ... Setting up mummer:mipsel (3.23+dfsg-5) ... Setting up debhelper (13) ... Setting up libgcc-9-dev:mipsel (9.3.0-10) ... Setting up libselinux1:mipsel (3.0-1+b3) ... Setting up libmount1:mipsel (2.34-0.1) ... Setting up libstdc++-9-dev:mipsel (9.3.0-10) ... Setting up libglib2.0-0:mipsel (2.64.2-1) ... /var/lib/dpkg/info/libglib2.0-0:mipsel.postinst: 47: /usr/lib/mipsel-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:mipsel.postinst: 50: /usr/lib/mipsel-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up exonerate:mipsel (2.4.0-4) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.30-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-6 dpkg-dev_1.19.7 g++-9_9.3.0-10 gcc-9_9.3.0-10 libc6-dev_2.30-4 libstdc++-9-dev_9.3.0-10 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10-20200418-1 libstdc++6-mipsel-cross_10-20200324-1cross1 linux-libc-dev_5.5.17-1 Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-6 binutils-common_2.34-6 binutils-mipsel-linux-gnu_2.34-5cross6 binutils-x86-64-linux-gnu_2.34-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-3 cpp-9_9.3.0-10 cpp-9-mipsel-linux-gnu_9.3.0-8cross1 cpp-mipsel-linux-gnu_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 exonerate_2.4.0-4 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-10 g++-9-mipsel-linux-gnu_9.3.0-8cross1 g++-mipsel-linux-gnu_4:9.2.1-4.1 gawk_1:5.0.1+dfsg-1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200418-1 gcc-10-cross-base-mipsen_10-20200324-1cross1 gcc-8-base_8.4.0-3 gcc-9_9.3.0-10 gcc-9-base_9.3.0-10 gcc-9-cross-base-mipsen_9.3.0-8cross1 gcc-9-mipsel-linux-gnu_9.3.0-8cross1 gcc-9-mipsel-linux-gnu-base_9.3.0-8cross1 gcc-mipsel-linux-gnu_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 help2man_1.47.13 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-7 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-10 libatomic1_10-20200418-1 libatomic1-mipsel-cross_10-20200324-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-6 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-4 libc-dev-bin_2.30-4 libc6_2.30-4 libc6-dev_2.30-4 libc6-dev-mipsel-cross_2.30-2cross1 libc6-mipsel-cross_2.30-2cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200418-1 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-6 libctf0_2.34-6 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.0-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-10 libgcc-9-dev-mipsel-cross_9.3.0-8cross1 libgcc-s1_10-20200418-1 libgcc-s1-mipsel-cross_10-20200324-1cross1 libgcc1_1:10-20200418-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1 libgomp1-mipsel-cross_10-20200324-1cross1 libgpg-error0_1.37-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200418-1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200418-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-3 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libquadmath0_10-20200418-1 libreadline8_8.0-4 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-10 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10-20200418-1 libstdc++6-mipsel-cross_10-20200324-1cross1 libsub-override-perl_0.09-2 libsystemd0_245.5-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200418-1 libubsan1_10-20200418-1 libuchardet0_0.0.6-3 libudev1_245.5-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.5.17-1 linux-libc-dev-mipsel-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 mummer_3.23+dfsg-5 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-10 po-debconf_1.0.21 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fsa Binary: fsa Architecture: any Version: 1.15.9+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://fsa.sourceforge.net/ Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/fsa Vcs-Git: https://salsa.debian.org/med-team/fsa.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), mummer, exonerate, help2man Package-List: fsa deb science optional arch=any Checksums-Sha1: bff4c2f27d54db9891d70e2e314bafecf801cabb 558688 fsa_1.15.9+dfsg.orig.tar.xz f17b8084b9e3e02f4189d70770c17f9dc92edbb3 13064 fsa_1.15.9+dfsg-4.debian.tar.xz Checksums-Sha256: c3a845122e08f5e3c0fb96ef5133270a386c4ac6198856fc56aa2a796c0a6377 558688 fsa_1.15.9+dfsg.orig.tar.xz cb75f55ceedf1c17b806926217240cf8dfc2c55c0de46abbbf17f917ba4fcb0a 13064 fsa_1.15.9+dfsg-4.debian.tar.xz Files: 8d6b1b18195dc5262113b1d363de88bf 558688 fsa_1.15.9+dfsg.orig.tar.xz feb8d5f98042822b6657328310c3886a 13064 fsa_1.15.9+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltPkJcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGFzxAAmWWXtBEmyWuyho1h5rs7AeEfNaLD6qYJ K9emwYPKr7eyscpjt0DPd/8/b9gdSYcKqfydBSNAlP+lDZz4/5svhV7pQoesED1C d7pyohztOA8qXCeyXglaT5nEwvaANPrgceyTqBqqLjLtwno8UbJYXlLy7GucSxte 1dOl+6Mp6kQKMFPJWaUv+eyCXwNsJQWVKCm3DK/P+hOfep7u/wqXdcf7NecHVNyi 2k7hkm4/AMBduiMAC/ym/SwRtRIlnlUdVY0YO2Z7OQNOXnFV/L0rj6twXtp2/C0j QxZrlIRuQ9EVnfUielGRW1VaZ4hga/i0SG+tDgKRttai6b81xZRJMWukRgNvnl/J D8KthdyUjczce1PxpTWXFzZrzino9yNwL5eeA/CPe/naSWoUVhCysiWqSd/imOkb J5wbwtnVqmVtRt9Bc7TZ28q/hAoMnMIR8r9wUlyTr/pPSZgf99U1ruKsQ1HXwNAQ lCKAI/YabNnUMT+VH1eKKlgjLOUCdIp2uQakJHt7ztqeQtF5wmrvnMVP1g1knsKt qDi3bDeG9dfQj3A7rF1d1aXkQnZ1kMpTz0vHMku0uq81GkdBZWfnSfTEA7OVT1iH 4iRwhL2cIywaoEk9cNz7GMe422uCoR2op12sFJNlKnOh5pU7+vttcDHXsHYRYHO9 yM6eYaBinMc= =8oPA -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 18 19:10:15 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fsa_1.15.9+dfsg-4.dsc dpkg-source: info: extracting fsa in /<> dpkg-source: info: unpacking fsa_1.15.9+dfsg.orig.tar.xz dpkg-source: info: unpacking fsa_1.15.9+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-display.patch dpkg-source: info: applying removed-pdf-only-docs.patch dpkg-source: info: applying privacy_breach_logo.patch dpkg-source: info: applying fixed-check-for-m64-flag.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-cae5af31-d955-4898-a6ae-bc277a3d228c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fsa dpkg-buildpackage: info: source version 1.15.9+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean dh_clean # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --libexecdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.mipsel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mipsel-linux-gnu-strip... mipsel-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1003' is supported by ustar format... yes checking whether GID '1003' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... none needed checking whether mipsel-linux-gnu-gcc understands -c and -o together... yes checking dependency style of mipsel-linux-gnu-gcc... none checking for mipsel-linux-gnu-ar... mipsel-linux-gnu-ar checking the archiver (mipsel-linux-gnu-ar) interface... ar checking for mipsel-linux-gnu-gcc... (cached) mipsel-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether mipsel-linux-gnu-gcc accepts -g... (cached) yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether mipsel-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of mipsel-linux-gnu-gcc... (cached) none checking for mipsel-linux-gnu-g++... mipsel-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether mipsel-linux-gnu-g++ accepts -g... yes checking dependency style of mipsel-linux-gnu-g++... none checking for gawk... (cached) gawk checking whether make sets $(MAKE)... (cached) yes checking for mipsel-linux-gnu-ranlib... mipsel-linux-gnu-ranlib checking how to run the C++ preprocessor... mipsel-linux-gnu-g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for inline... inline checking for pid_t... yes checking for size_t... yes checking for unsigned long long int... yes checking for uintmax_t... yes checking for ptrdiff_t... yes checking tr1/unordered_map usability... yes checking tr1/unordered_map presence... yes checking for tr1/unordered_map... yes checking tr1/unordered_set usability... yes checking tr1/unordered_set presence... yes checking for tr1/unordered_set... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... cross configure: WARNING: result yes guessed because of cross compilation checking for working vfork... (cached) yes checking for floor... yes checking for memmove... yes checking for pow... yes checking for regcomp... yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strspn... yes checking for strstr... yes checking build system type... x86_64-pc-linux-gnu checking host system type... mipsel-unknown-linux-gnu checking if gcc accepts -m64... no checking for mummer... /usr/bin/mummer checking for exonerate... /usr/bin/exonerate checking for struct sysinfo.totalram... yes checking for struct sysinfo.mem_unit... yes checking whether sysctl is declared... yes checking whether CTL_HW is declared... no checking whether HW_PHYSMEM is declared... no checking for javac... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/main/Makefile config.status: creating src/manager/Makefile config.status: creating src/fsa/Makefile config.status: creating src/annealing/Makefile config.status: creating src/math/Makefile config.status: creating src/util/Makefile config.status: creating src/seq/Makefile config.status: creating perl/Makefile config.status: creating examples/Makefile config.status: creating html/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands -- FSA 1.15.9 Configuration Results -- C++ compiler: mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG GCC version: mipsel-linux-gnu-gcc (Debian 9.3.0-8) 9.3.0 Host System type: mipsel-unknown-linux-gnu Install prefix: /usr See config.h for further configuration information. Email with questions and bug reports. dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src/util make[3]: Entering directory '/<>/src/util' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dexception.o dexception.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o logfile.o logfile.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o memcheck.o memcheck.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o misc.o misc.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o opts_list.o opts_list.cc opts_list.cc:99:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 99 | SET_VERSION_INFO(*this); | ^ In file included from opts_list.cc:2: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ opts_list.cc:99:3: note: in expansion of macro ‘SET_VERSION_INFO’ 99 | SET_VERSION_INFO(*this); | ^~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o regexp.o regexp.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sstring.o sstring.cc rm -f libutil.a mipsel-linux-gnu-ar cru libutil.a dexception.o logfile.o memcheck.o misc.o opts_list.o regexp.o sstring.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libutil.a make[3]: Leaving directory '/<>/src/util' Making all in src/math make[3]: Entering directory '/<>/src/math' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mathematics.o mathematics.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mst.o mst.cc rm -f libmath.a mipsel-linux-gnu-ar cru libmath.a mathematics.o mst.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libmath.a make[3]: Leaving directory '/<>/src/math' Making all in src/seq make[3]: Entering directory '/<>/src/seq' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alphabet.o alphabet.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment.o alignment.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gff.o gff.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mercator.o mercator.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence.o sequence.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o similarity_matrix.o similarity_matrix.cc rm -f libseq.a mipsel-linux-gnu-ar cru libseq.a alphabet.o alignment.o gff.o mercator.o sequence.o similarity_matrix.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libseq.a make[3]: Leaving directory '/<>/src/seq' Making all in src/manager make[3]: Entering directory '/<>/src/manager' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o manager.o manager.cc In file included from ../../src/manager/manager.h:12, from manager.cc:6: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mw_adapter.o mw_adapter.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_adapter.o db_adapter.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_misc.o db_misc.cc In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71, from db_misc.cc:7: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ rm -f libmanager.a mipsel-linux-gnu-ar cru libmanager.a manager.o mw_adapter.o db_adapter.o db_misc.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libmanager.a make[3]: Leaving directory '/<>/src/manager' Making all in src/fsa make[3]: Entering directory '/<>/src/fsa' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o algebras.o algebras.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoacid_indel2dp.o aminoacid_indel2dp.cc aminoacid_indel2dp.cc: In function ‘Algebra Forward(AminoAcidIndel2AlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra Backward(AminoAcidIndel2AlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1320:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1320 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra ForwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1568:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1568 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:2189:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2189 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoaciddp.o aminoaciddp.cc aminoaciddp.cc: In function ‘Algebra Forward(AminoAcidAlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra Backward(AminoAcidAlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1230:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1230 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra ForwardBanding(AminoAcidAlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1448:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1448 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBanding(AminoAcidAlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1979:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1979 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o anchors.o anchors.cc In file included from ../../src/fsa/anchors.h:17, from anchors.cc:16: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ anchors.cc: In member function ‘fsa::Anchors fsa::Exonerate_adapter::call_exonerate(const string&, const string&, int) const’: anchors.cc:863:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 863 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store exonerate results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:864:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 864 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc: In member function ‘fsa::Anchors fsa::Mummer_adapter::call_mummer(const string&, const string&, size_t) const’: anchors.cc:1100:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1100 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store mummer results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:1101:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1101 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o constraints.o constraints.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o fsa.o fsa.cc fsa.cc:25:125: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^ In file included from ../../src/fsa/fsa.h:66, from fsa.cc:11: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ ../../src/util/opts_list.h:152:153: note: in expansion of macro ‘SET_VERSION_INFO’ 152 | #define INIT_CONSTRUCTED_OPTS_LIST(OPTS,ARGS,SYNTAX,SHORTDESC) OPTS.short_description = (SHORTDESC); OPTS.syntax = (SYNTAX); OPTS.expect_args = (ARGS); SET_VERSION_INFO(OPTS); Log_stream::add_opts(OPTS); | ^~~~~~~~~~~~~~~~ fsa.cc:25:3: note: in expansion of macro ‘INIT_CONSTRUCTED_OPTS_LIST’ 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71, from fsa.cc:11: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o model.o model.cc In file included from ../../src/fsa/model.h:32, from model.cc:8: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotide_indel2dp.o nucleotide_indel2dp.cc nucleotide_indel2dp.cc: In function ‘Algebra Forward(NucleotideIndel2AlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra Backward(NucleotideIndel2AlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:1256:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1256 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra ForwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1472:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1472 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:2029:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2029 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotidedp.o nucleotidedp.cc nucleotidedp.cc: In function ‘Algebra Forward(NucleotideAlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra Backward(NucleotideAlignDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:1166:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1166 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra ForwardBanding(NucleotideAlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1352:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1352 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBanding(NucleotideAlignWithBandingDPTable**, const string&, const string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1819:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1819 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence_pair_selector.o sequence_pair_selector.cc rm -f libfsa.a mipsel-linux-gnu-ar cru libfsa.a algebras.o aminoacid_indel2dp.o aminoaciddp.o anchors.o constraints.o fsa.o model.o nucleotide_indel2dp.o nucleotidedp.o sequence_pair_selector.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libfsa.a make[3]: Leaving directory '/<>/src/fsa' Making all in src/annealing make[3]: Entering directory '/<>/src/annealing' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment_DAG.o alignment_DAG.cc In file included from ../../src/annealing/alignment_DAG.h:58, from alignment_DAG.cc:12: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dotplot.o dotplot.cc mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o tree_weights.o tree_weights.cc rm -f libannealing.a mipsel-linux-gnu-ar cru libannealing.a alignment_DAG.o dotplot.o tree_weights.o mipsel-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') mipsel-linux-gnu-ranlib libannealing.a make[3]: Leaving directory '/<>/src/annealing' Making all in src/main make[3]: Entering directory '/<>/src/main' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o main.o main.cc In file included from /usr/mipsel-linux-gnu/include/c++/9/ext/hash_map:60, from ../../src/fsa/dptables.h:43, from ../../src/fsa/mybanding.h:25, from ../../src/fsa/model.h:24, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from main.cc:8: /usr/mipsel-linux-gnu/include/c++/9/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71, from main.cc:8: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o fsa main.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gapcleaner.o gapcleaner.cc In file included from ../../src/annealing/alignment_DAG.h:58, from gapcleaner.cc:11: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o gapcleaner gapcleaner.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o isect_mercator_alignment_gff.o isect_mercator_alignment_gff.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o isect_mercator_alignment_gff isect_mercator_alignment_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_coords.o map_coords.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_coords map_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_gff_coords.o map_gff_coords.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_gff_coords map_gff_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o percentid.o percentid.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o percentid percentid.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o prot2codon.o prot2codon.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o prot2codon prot2codon.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta.o slice_fasta.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta slice_fasta.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta_gff.o slice_fasta_gff.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta_gff slice_fasta_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_mercator_alignment.o slice_mercator_alignment.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_mercator_alignment slice_mercator_alignment.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o translate.o translate.cc mipsel-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o translate translate.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a make[3]: Leaving directory '/<>/src/main' Making all in perl make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/perl' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' Making all in html make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/html' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' echo "Tests seem to miss some files:" Tests seem to miss some files: echo "make[4]: *** No rule to make target 'apps/isect_d.unmappable.bash', needed by 'apps/isect_d.unmappable.bash.log'. Stop." make[4]: *** No rule to make target 'apps/isect_d.unmappable.bash', needed by 'apps/isect_d.unmappable.bash.log'. Stop. make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/fsa-1.15.9\+dfsg/debian/fsa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src/util make[2]: Entering directory '/<>/src/util' make[3]: Entering directory '/<>/src/util' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/util' make[2]: Leaving directory '/<>/src/util' Making install in src/math make[2]: Entering directory '/<>/src/math' make[3]: Entering directory '/<>/src/math' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/math' make[2]: Leaving directory '/<>/src/math' Making install in src/seq make[2]: Entering directory '/<>/src/seq' make[3]: Entering directory '/<>/src/seq' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/seq' make[2]: Leaving directory '/<>/src/seq' Making install in src/manager make[2]: Entering directory '/<>/src/manager' make[3]: Entering directory '/<>/src/manager' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/manager' make[2]: Leaving directory '/<>/src/manager' Making install in src/fsa make[2]: Entering directory '/<>/src/fsa' make[3]: Entering directory '/<>/src/fsa' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/fsa' make[2]: Leaving directory '/<>/src/fsa' Making install in src/annealing make[2]: Entering directory '/<>/src/annealing' make[3]: Entering directory '/<>/src/annealing' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/annealing' make[2]: Leaving directory '/<>/src/annealing' Making install in src/main make[2]: Entering directory '/<>/src/main' make[3]: Entering directory '/<>/src/main' /bin/mkdir -p '/<>/debian/fsa/usr/bin' /usr/bin/install -c fsa gapcleaner isect_mercator_alignment_gff map_coords map_gff_coords percentid prot2codon slice_fasta slice_fasta_gff slice_mercator_alignment translate '/<>/debian/fsa/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/main' make[2]: Leaving directory '/<>/src/main' Making install in perl make[2]: Entering directory '/<>/perl' make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/perl' make[2]: Leaving directory '/<>/perl' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' Making install in html make[2]: Entering directory '/<>/html' make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/html' make[2]: Leaving directory '/<>/html' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mv /<>/debian/fsa/usr/bin/translate /<>/debian/fsa/usr/bin/fsa-translate make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'fsa' in '../fsa_1.15.9+dfsg-4_mipsel.deb'. dpkg-deb: building package 'fsa-dbgsym' in '../fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb'. # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../fsa_1.15.9+dfsg-4_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-23T11:15:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fsa_1.15.9+dfsg-4_mipsel.changes: --------------------------------- Format: 1.8 Date: Wed, 18 Jul 2018 21:07:06 +0200 Source: fsa Binary: fsa fsa-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 1.15.9+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fsa - Fast Statistical Alignment of protein, RNA or DNA sequences Changes: fsa (1.15.9+dfsg-4) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * d/rules: - Drop unneeded get-orig-source target - Do not parse d/changelog Checksums-Sha1: 510a1bfcae0b03242790ce0b434a2ad3e7c57aeb 20808204 fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb 8eb056af8a7159bd8afb6c0f37417445bb28ffcd 4871 fsa_1.15.9+dfsg-4_mipsel.buildinfo 4d50892a42061840da564bc698f7761837abc55f 696768 fsa_1.15.9+dfsg-4_mipsel.deb Checksums-Sha256: 0be1410d723cd1d912e7019a673640a66068c7b3adfc5e8694136fad0d74cadc 20808204 fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb ac5cb0ef8392c3978c203c9c82fe3b04ebbbbbca75ab37f1e04748506d925853 4871 fsa_1.15.9+dfsg-4_mipsel.buildinfo 13d3f0a3c93273f2c8585b4ce7f55ea29707bf589541bbd4a3be7c5e64164465 696768 fsa_1.15.9+dfsg-4_mipsel.deb Files: 42ab04cb380a727dbe6f69a5face58fc 20808204 debug optional fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb 312ede9cc9f51486d0e33ae21616e1d6 4871 science optional fsa_1.15.9+dfsg-4_mipsel.buildinfo ab1e620eff33fccbd22cb8ca6e523c57 696768 science optional fsa_1.15.9+dfsg-4_mipsel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fsa Binary: fsa Architecture: mipsel Version: 1.15.9+dfsg-4 Checksums-Md5: 42ab04cb380a727dbe6f69a5face58fc 20808204 fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb ab1e620eff33fccbd22cb8ca6e523c57 696768 fsa_1.15.9+dfsg-4_mipsel.deb Checksums-Sha1: 510a1bfcae0b03242790ce0b434a2ad3e7c57aeb 20808204 fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb 4d50892a42061840da564bc698f7761837abc55f 696768 fsa_1.15.9+dfsg-4_mipsel.deb Checksums-Sha256: 0be1410d723cd1d912e7019a673640a66068c7b3adfc5e8694136fad0d74cadc 20808204 fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb 13d3f0a3c93273f2c8585b4ce7f55ea29707bf589541bbd4a3be7c5e64164465 696768 fsa_1.15.9+dfsg-4_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 23 Apr 2020 11:15:48 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-6), binutils-common (= 2.34-6), binutils-x86-64-linux-gnu (= 2.34-6), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-10), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), exonerate (= 2.4.0-4), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-10), gawk (= 1:5.0.1+dfsg-1), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200418-1), gcc-9 (= 9.3.0-10), gcc-9-base (= 9.3.0-10), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.10-2), help2man (= 1.47.13), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-7), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-10), libatomic1 (= 10-20200418-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-6), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.30-4), libc-dev-bin (= 2.30-4), libc6 (= 2.30-4), libc6-dev (= 2.30-4), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10-20200418-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-6), libctf0 (= 2.34-6), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 13), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.0-1), libgcc-9-dev (= 9.3.0-10), libgcc-s1 (= 10-20200418-1), libgcc1 (= 1:10-20200418-1), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200418-1), libgpg-error0 (= 1.37-1), libicu63 (= 63.2-3), libisl22 (= 0.22.1-1), libitm1 (= 10-20200418-1), liblocale-gettext-perl (= 1.07-4), liblsan0 (= 10-20200418-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libncursesw6 (= 6.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-10), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10-20200418-1), libreadline8 (= 8.0-4), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.3.0-10), libstdc++6 (= 10-20200418-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.5-1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10-20200418-1), libubsan1 (= 10-20200418-1), libuchardet0 (= 0.0.6-3), libudev1 (= 245.5-1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.5.17-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), mummer (= 3.23+dfsg-5), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-10), perl-base (= 5.30.0-10), perl-modules-5.30 (= 5.30.0-10), po-debconf (= 1.0.21), readline-common (= 8.0-4), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1531940826" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fsa-dbgsym_1.15.9+dfsg-4_mipsel.deb ----------------------------------- new Debian package, version 2.0. size 20808204 bytes: control archive=1048 bytes. 779 bytes, 12 lines control 1166 bytes, 11 lines md5sums Package: fsa-dbgsym Source: fsa Version: 1.15.9+dfsg-4 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 21105 Depends: fsa (= 1.15.9+dfsg-4) Section: debug Priority: optional Description: debug symbols for fsa Build-Ids: 12a89f059cb379e0485b1a13ada9e59799301ec0 1b536e35f67c813321ca09ed7eeb4a88731129f1 32b7b2e54697b83ac14da2925fb0e83e47619924 3b08f4c9b5c55db5e1d339b591088875c9285d74 3f27368ce085e9f3907cefba2b397f4b5c325826 465350bc8053e51dffe3d938edd40814615c7f22 46e3e7850c9acf3e0e1c702500d228b1aa064b05 57de7a001e9c962d9a2cde0290ad546136851d14 cb4c44f84345e8afff2c7b89a60576f222659376 e07ebe71fcd93c402efbfdc1b41082028e797bdb fea4959804fcb61a11a77ff93ae675cb9fbd2c22 drwxr-xr-x root/root 0 2018-07-18 19:07 ./ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/12/ -rw-r--r-- root/root 993612 2018-07-18 19:07 ./usr/lib/debug/.build-id/12/a89f059cb379e0485b1a13ada9e59799301ec0.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/1b/ -rw-r--r-- root/root 1923892 2018-07-18 19:07 ./usr/lib/debug/.build-id/1b/536e35f67c813321ca09ed7eeb4a88731129f1.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/32/ -rw-r--r-- root/root 6252280 2018-07-18 19:07 ./usr/lib/debug/.build-id/32/b7b2e54697b83ac14da2925fb0e83e47619924.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/3b/ -rw-r--r-- root/root 1372112 2018-07-18 19:07 ./usr/lib/debug/.build-id/3b/08f4c9b5c55db5e1d339b591088875c9285d74.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 1908092 2018-07-18 19:07 ./usr/lib/debug/.build-id/3f/27368ce085e9f3907cefba2b397f4b5c325826.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/46/ -rw-r--r-- root/root 1932864 2018-07-18 19:07 ./usr/lib/debug/.build-id/46/5350bc8053e51dffe3d938edd40814615c7f22.debug -rw-r--r-- root/root 962004 2018-07-18 19:07 ./usr/lib/debug/.build-id/46/e3e7850c9acf3e0e1c702500d228b1aa064b05.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/57/ -rw-r--r-- root/root 986544 2018-07-18 19:07 ./usr/lib/debug/.build-id/57/de7a001e9c962d9a2cde0290ad546136851d14.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/cb/ -rw-r--r-- root/root 2325048 2018-07-18 19:07 ./usr/lib/debug/.build-id/cb/4c44f84345e8afff2c7b89a60576f222659376.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/e0/ -rw-r--r-- root/root 987020 2018-07-18 19:07 ./usr/lib/debug/.build-id/e0/7ebe71fcd93c402efbfdc1b41082028e797bdb.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debug/.build-id/fe/ -rw-r--r-- root/root 1944464 2018-07-18 19:07 ./usr/lib/debug/.build-id/fe/a4959804fcb61a11a77ff93ae675cb9fbd2c22.debug drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-07-18 19:07 ./usr/share/doc/fsa-dbgsym -> fsa fsa_1.15.9+dfsg-4_mipsel.deb ---------------------------- new Debian package, version 2.0. size 696768 bytes: control archive=2716 bytes. 2334 bytes, 40 lines control 3531 bytes, 49 lines md5sums Package: fsa Version: 1.15.9+dfsg-4 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 4393 Depends: libc6 (>= 2.15), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), mummer, exonerate Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: http://fsa.sourceforge.net/ Description: Fast Statistical Alignment of protein, RNA or DNA sequences FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using only pairwise estimations of homology. This is made possible by the sequence annealing technique for constructing a multiple alignment from pairwise comparisons, developed by Ariel Schwartz. . FSA brings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such as aligning thousands of sequences or megabase-long sequences. FSA introduces several novel methods for constructing better alignments: * FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of input sequences. This "query-specific learning" alignment method makes FSA very robust: it can produce superior alignments of sets of homologous sequences which are subject to very different evolutionary constraints. * FSA is capable of aligning hundreds or even thousands of sequences using a randomized inference algorithm to reduce the computational cost of multiple alignment. This randomized inference can be over ten times faster than a direct approach with little loss of accuracy. * FSA can quickly align very long sequences using the "anchor annealing" technique for resolving anchors and projecting them with transitive anchoring. It then stitches together the alignment between the anchors using the methods described above. * The included GUI, MAD (Multiple Alignment Display), can display the intermediate alignments produced by FSA, where each character is colored according to the probability that it is correctly aligned drwxr-xr-x root/root 0 2018-07-18 19:07 ./ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/bin/ -rwxr-xr-x root/root 1476404 2018-07-18 19:07 ./usr/bin/fsa -rwxr-xr-x root/root 182424 2018-07-18 19:07 ./usr/bin/fsa-translate -rwxr-xr-x root/root 457592 2018-07-18 19:07 ./usr/bin/gapcleaner -rwxr-xr-x root/root 328608 2018-07-18 19:07 ./usr/bin/isect_mercator_alignment_gff -rwxr-xr-x root/root 328540 2018-07-18 19:07 ./usr/bin/map_coords -rwxr-xr-x root/root 328600 2018-07-18 19:07 ./usr/bin/map_gff_coords -rwxr-xr-x root/root 182408 2018-07-18 19:07 ./usr/bin/percentid -rwxr-xr-x root/root 182444 2018-07-18 19:07 ./usr/bin/prot2codon -rwxr-xr-x root/root 186532 2018-07-18 19:07 ./usr/bin/slice_fasta -rwxr-xr-x root/root 253492 2018-07-18 19:07 ./usr/bin/slice_fasta_gff -rwxr-xr-x root/root 328608 2018-07-18 19:07 ./usr/bin/slice_mercator_alignment drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2018-07-18 19:07 ./usr/lib/debian-med/bin/tranlate -> ../../../bin/fsa-translate drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/lib/debian-med/share/man/man1/ lrwxrwxrwx root/root 0 2018-07-18 19:07 ./usr/lib/debian-med/share/man/man1/translate.1.gz -> ../../../../../share/man/man1/fsa-translate.1.gz drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/doc/fsa/ -rw-r--r-- root/root 24437 2018-07-18 19:07 ./usr/share/doc/fsa/FAQ.html -rw-r--r-- root/root 5889 2014-05-16 17:25 ./usr/share/doc/fsa/README.gz -rw-r--r-- root/root 462 2018-07-18 19:07 ./usr/share/doc/fsa/changelog.Debian.gz -rw-r--r-- root/root 3602 2018-07-18 19:07 ./usr/share/doc/fsa/copyright drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/doc/fsa/examples/ -rw-r--r-- root/root 1244 2012-03-22 17:09 ./usr/share/doc/fsa/examples/README -rw-r--r-- root/root 1505 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta -rw-r--r-- root/root 9906 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.gui.gz -rw-r--r-- root/root 79537 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.probs.gz -rw-r--r-- root/root 1547 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.mfa -rw-r--r-- root/root 1546 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.mfa -rw-r--r-- root/root 1543 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.stock -rw-r--r-- root/root 1876 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.stock -rw-r--r-- root/root 715 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta -rw-r--r-- root/root 3894 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.gui.gz -rw-r--r-- root/root 40577 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.probs.gz -rw-r--r-- root/root 800 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.mfa -rw-r--r-- root/root 774 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.mfa -rw-r--r-- root/root 1812 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.stock -rw-r--r-- root/root 1025 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.stock -rw-r--r-- root/root 471 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta -rw-r--r-- root/root 2400 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.gui.gz -rw-r--r-- root/root 24959 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.probs.gz -rw-r--r-- root/root 488 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.mfa -rw-r--r-- root/root 492 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.mfa -rw-r--r-- root/root 1185 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.stock -rw-r--r-- root/root 639 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.stock -rw-r--r-- root/root 266 2012-03-22 17:09 ./usr/share/doc/fsa/pretty.css drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-18 19:07 ./usr/share/man/man1/ -rw-r--r-- root/root 402 2018-07-18 19:07 ./usr/share/man/man1/fsa-translate.1.gz -rw-r--r-- root/root 393 2018-07-18 19:07 ./usr/share/man/man1/fsa.1.gz -rw-r--r-- root/root 467 2018-07-18 19:07 ./usr/share/man/man1/gapcleaner.1.gz -rw-r--r-- root/root 1077 2018-07-18 19:07 ./usr/share/man/man1/isect_mercator_alignment_gff.1.gz -rw-r--r-- root/root 695 2018-07-18 19:07 ./usr/share/man/man1/map_coords.1.gz -rw-r--r-- root/root 1074 2018-07-18 19:07 ./usr/share/man/man1/map_gff_coords.1.gz -rw-r--r-- root/root 378 2018-07-18 19:07 ./usr/share/man/man1/percentid.1.gz -rw-r--r-- root/root 411 2018-07-18 19:07 ./usr/share/man/man1/prot2codon.1.gz -rw-r--r-- root/root 443 2018-07-18 19:07 ./usr/share/man/man1/slice_fasta.1.gz -rw-r--r-- root/root 533 2018-07-18 19:07 ./usr/share/man/man1/slice_fasta_gff.1.gz -rw-r--r-- root/root 870 2018-07-18 19:07 ./usr/share/man/man1/slice_mercator_alignment.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [549 B] Get:5 copy:/<>/apt_archive ./ Packages [642 B] Fetched 2154 B in 0s (91.6 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults sbuild-build-depends-lintian-dummy:mipsel t1utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 9133 kB of archives. After this operation, 26.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.19-1 [126 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b1 [26.0 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 4 [7148 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-3 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.067-1 [212 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3200-1 [39.1 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.23-1 [369 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.44-1 [83.5 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-5 [105 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.11-1 [12.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004000-1 [12.5 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.011+ds-1 [106 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.011+ds-1 [108 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010001-1 [338 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.66.0 [1294 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9133 kB in 0s (46.1 MB/s) Selecting previously unselected package netbase. (Reading database ... 20601 files and directories currently installed.) Preparing to unpack .../00-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../01-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../02-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../03-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../04-libsqlite3-0_3.31.1-5_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.31.1-5) ... Selecting previously unselected package gpg. Preparing to unpack .../05-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../06-libapt-pkg-perl_0.1.36+b3_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b3) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../07-libb-hooks-op-check-perl_0.22-1+b2_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../08-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../09-libdevel-callchecker-perl_0.008-1+b1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../10-libparams-classify-perl_0.015-1+b2_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b2) ... Selecting previously unselected package libmodule-runtime-perl. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 219120 Build-Time: 185 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 18 Job: fsa_1.15.9+dfsg-4 Lintian: pass Machine Architecture: amd64 Package: fsa Package-Time: 212 Source-Version: 1.15.9+dfsg-4 Space: 219120 Status: successful Version: 1.15.9+dfsg-4 -------------------------------------------------------------------------------- Finished at 2020-04-23T11:15:49Z Build needed 00:03:32, 219120k disk space