sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir.einval.org +==============================================================================+ | fsa 1.15.9+dfsg-6 (amd64) Wed, 27 Jul 2022 23:15:29 +0000 | +==============================================================================+ Package: fsa Version: 1.15.9+dfsg-6 Source Version: 1.15.9+dfsg-6 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-9e17d92e-3408-43cf-83da-de7bcb9cff9b' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-d0VN8b/resolver-ezvxVS' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [192 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [9269 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9842 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [9119 kB] Fetched 28.4 MB in 8s (3752 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fsa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fsa.git Please use: git clone https://salsa.debian.org/med-team/fsa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 574 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main fsa 1.15.9+dfsg-6 (dsc) [1971 B] Get:2 http://mirror.einval.org/debian sid/main fsa 1.15.9+dfsg-6 (tar) [559 kB] Get:3 http://mirror.einval.org/debian sid/main fsa 1.15.9+dfsg-6 (diff) [13.4 kB] Fetched 574 kB in 0s (8504 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fsa-d0VN8b/fsa-1.15.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-d0VN8b' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [423 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1890 B in 0s (45.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:amd64 file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gawk gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libblkid1:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu71 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libmount1:amd64 libnsl-dev:amd64 libnsl2:amd64 libpcre2-8-0:amd64 libpcre3:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libselinux1:amd64 libsigsegv2 libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db mummer:amd64 po-debconf readline-common sensible-utils ucf zlib1g:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-doc dh-make binutils-multiarch wise:amd64 g++-12-multilib-x86-64-linux-gnu gcc-12-doc gawk-doc gcc-12-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 cryptsetup-bin:amd64 libstdc++-12-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl libglib2.0-data:amd64 shared-mime-info:amd64 xdg-user-dirs:amd64 krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:amd64 file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gawk gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libblkid1:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu71 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libmount1:amd64 libnsl-dev:amd64 libnsl2:amd64 libpcre2-8-0:amd64 libpcre3:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libselinux1:amd64 libsigsegv2 libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db mummer:amd64 po-debconf readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 0 upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 245 MB of archives. After this operation, 924 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1.2-1.2 [73.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1.2-1.2 [160 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.14-1 [37.0 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 gawk arm64 1:5.1.0-1 [570 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b2 [18.9 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-4 [295 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-4 [124 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-4 [66.9 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-6 [173 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.38-5 [145 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.6-1 [36.8 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.10.2-1 [1392 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-6 [510 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu-base arm64 12.1.0-7cross1 [208 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 cpp-12-x86-64-linux-gnu arm64 12.1.0-7cross1 [54.4 MB] Get:25 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:12.1.0-3 [17.1 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.38.90.20220713-2 [5493 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 gcc-12-cross-base all 12.1.0-7cross1 [203 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 12.1.0-7cross1 [50.3 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 12.1.0-7cross1 [113 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 12.1.0-7cross1 [25.5 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 12.1.0-7cross1 [9112 B] Get:33 http://mirror.einval.org/debian sid/main arm64 libasan8-amd64-cross all 12.1.0-7cross1 [2194 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 12.1.0-7cross1 [968 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libtsan2-amd64-cross all 12.1.0-7cross1 [2197 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.33-1cross1 [1579 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 12.1.0-7cross1 [571 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 12.1.0-7cross1 [882 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 12.1.0-7cross1 [144 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libgcc-12-dev-amd64-cross all 12.1.0-7cross1 [2437 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu arm64 12.1.0-7cross1 [61.8 MB] Get:42 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:12.1.0-3 [1456 B] Get:43 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.15.5-1cross1 [1576 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.33-1cross1 [2272 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libstdc++-12-dev-amd64-cross all 12.1.0-7cross1 [2026 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 g++-12-x86-64-linux-gnu arm64 12.1.0-7cross1 [58.6 MB] Get:47 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:12.1.0-3 [1176 B] Get:48 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libicu71 arm64 71.1-3 [9046 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.14+dfsg-1+b1 [640 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1 [326 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.27-1 [17.3 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:64 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.8 [195 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.7-4 [526 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-3 [10.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.187-1 [178 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-6 [1260 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.8 [1070 kB] Get:77 http://mirror.einval.org/debian sid/main amd64 gcc-12-base amd64 12.1.0-7 [207 kB] Get:78 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 12.1.0-7 [50.3 kB] Get:79 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.33-8 [2845 kB] Get:80 http://mirror.einval.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:81 http://mirror.einval.org/debian sid/main amd64 libblkid1 amd64 2.38-5 [206 kB] Get:82 http://mirror.einval.org/debian sid/main amd64 libpcre2-8-0 amd64 10.40-1 [259 kB] Get:83 http://mirror.einval.org/debian sid/main amd64 libselinux1 amd64 3.4-1+b1 [92.6 kB] Get:84 http://mirror.einval.org/debian sid/main amd64 libmount1 amd64 2.38-5 [223 kB] Get:85 http://mirror.einval.org/debian sid/main amd64 libpcre3 amd64 2:8.39-14 [345 kB] Get:86 http://mirror.einval.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-4 [91.6 kB] Get:87 http://mirror.einval.org/debian sid/main amd64 libglib2.0-0 amd64 2.72.3-1 [1429 kB] Get:88 http://mirror.einval.org/debian sid/main amd64 exonerate amd64 2.4.0-5 [1616 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 help2man arm64 1.49.2 [202 kB] Get:90 http://mirror.einval.org/debian sid/main amd64 libasan8 amd64 12.1.0-7 [2193 kB] Get:91 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 12.1.0-7 [9348 B] Get:92 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.18.14-1 [1613 kB] Get:93 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.28-2 [89.3 kB] Get:94 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.28-2 [118 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libssl3 amd64 3.0.5-1 [2035 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:103 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:104 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:105 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:106 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.33-8 [2294 kB] Get:107 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 12.1.0-7 [116 kB] Get:108 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 12.1.0-7 [26.1 kB] Get:109 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 12.1.0-7 [969 kB] Get:110 http://mirror.einval.org/debian sid/main amd64 libtsan2 amd64 12.1.0-7 [2198 kB] Get:111 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 12.1.0-7 [614 kB] Get:112 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 12.1.0-7 [883 kB] Get:113 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 12.1.0-7 [145 kB] Get:114 http://mirror.einval.org/debian sid/main amd64 libgcc-12-dev amd64 12.1.0-7 [2437 kB] Get:115 http://mirror.einval.org/debian sid/main amd64 libstdc++-12-dev amd64 12.1.0-7 [2045 kB] Get:116 http://mirror.einval.org/debian sid/main amd64 mummer amd64 3.23+dfsg-7 [664 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 245 MB in 3s (86.7 MB/s) Selecting previously unselected package readline-common. 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Setting up libmagic1:arm64 (1:5.41-4) ... Setting up linux-libc-dev:amd64 (5.18.14-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-6) ... Setting up m4 (1.4.18-5) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-1) ... Setting up libgomp1-amd64-cross (12.1.0-7cross1) ... Setting up gcc-12-base:amd64 (12.1.0-7) ... Setting up libitm1-amd64-cross (12.1.0-7cross1) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libatomic1-amd64-cross (12.1.0-7cross1) ... Setting up libquadmath0-amd64-cross (12.1.0-7cross1) ... Setting up autopoint (0.21-6) ... Setting up libc6-amd64-cross (2.33-1cross1) ... Setting up autoconf (2.71-2) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libgcc-s1-amd64-cross (12.1.0-7cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:arm64 (0.187-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up gcc-12-x86-64-linux-gnu-base:arm64 (12.1.0-7cross1) ... Setting up binutils-x86-64-linux-gnu (2.38.90.20220713-2) ... Setting up cpp-12-x86-64-linux-gnu (12.1.0-7cross1) ... Setting up libstdc++6-amd64-cross (12.1.0-7cross1) ... Setting up cpp-x86-64-linux-gnu (4:12.1.0-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up libasan8-amd64-cross (12.1.0-7cross1) ... Setting up liblsan0-amd64-cross (12.1.0-7cross1) ... Setting up libc6-dev-amd64-cross (2.33-1cross1) ... Setting up libtsan2-amd64-cross (12.1.0-7cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.49.2) ... Setting up dh-autoreconf (20) ... Setting up libubsan1-amd64-cross (12.1.0-7cross1) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libgcc-12-dev-amd64-cross (12.1.0-7cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libstdc++-12-dev-amd64-cross (12.1.0-7cross1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-12-x86-64-linux-gnu (12.1.0-7cross1) ... Setting up gcc-x86-64-linux-gnu (4:12.1.0-3) ... Setting up debhelper (13.8) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-x86-64-linux-gnu (12.1.0-7cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:12.1.0-3) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (12.1.0-7) ... Setting up libc6:amd64 (2.33-8) ... Setting up libffi8:amd64 (3.4.2-4) ... Setting up libasan8:amd64 (12.1.0-7) ... Setting up libtsan2:amd64 (12.1.0-7) ... Setting up libblkid1:amd64 (2.38-5) ... Setting up libstdc++6:amd64 (12.1.0-7) ... Setting up liblsan0:amd64 (12.1.0-7) ... Setting up libitm1:amd64 (12.1.0-7) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libssl3:amd64 (3.0.5-1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-4) ... Setting up libcrypt1:amd64 (1:4.4.28-2) ... Setting up libcom-err2:amd64 (1.46.5-2) ... Setting up libgomp1:amd64 (12.1.0-7) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up libpcre3:amd64 (2:8.39-14) ... Setting up libquadmath0:amd64 (12.1.0-7) ... Setting up libatomic1:amd64 (12.1.0-7) ... Setting up libpcre2-8-0:amd64 (10.40-1) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up libubsan1:amd64 (12.1.0-7) ... Setting up libcrypt-dev:amd64 (1:4.4.28-2) ... Setting up mummer:amd64 (3.23+dfsg-7) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up libselinux1:amd64 (3.4-1+b1) ... Setting up libgcc-12-dev:amd64 (12.1.0-7) ... Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Setting up libmount1:amd64 (2.38-5) ... Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libglib2.0-0:amd64 (2.72.3-1) ... /var/lib/dpkg/info/libglib2.0-0:amd64.postinst: 58: /usr/lib/x86_64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:amd64.postinst: 59: /usr/lib/x86_64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up exonerate:amd64 (2.4.0-5) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.33-8) ... Setting up libstdc++-12-dev:amd64 (12.1.0-7) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-12_12.1.0-7 gcc-12_12.1.0-7 libc6-dev_2.33-8 libstdc++-12-dev_12.1.0-7 libstdc++-12-dev-amd64-cross_12.1.0-7cross1 libstdc++6_12.1.0-7 libstdc++6-amd64-cross_12.1.0-7cross1 linux-libc-dev_5.18.14-1 Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38.90.20220713-2 binutils-aarch64-linux-gnu_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38-5 bsdutils_1:2.38-5 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:12.1.0-3 cpp-12_12.1.0-7 cpp-12-x86-64-linux-gnu_12.1.0-7cross1 cpp-x86-64-linux-gnu_4:12.1.0-3 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.8 debian-archive-keyring_2021.1.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 exonerate_2.4.0-5 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3 g++-12_12.1.0-7 g++-12-x86-64-linux-gnu_12.1.0-7cross1 g++-x86-64-linux-gnu_4:12.1.0-3 gawk_1:5.1.0-1 gcc_4:12.1.0-3 gcc-12_12.1.0-7 gcc-12-base_12.1.0-7 gcc-12-cross-base_12.1.0-7cross1 gcc-12-x86-64-linux-gnu_12.1.0-7cross1 gcc-12-x86-64-linux-gnu-base_12.1.0-7cross1 gcc-x86-64-linux-gnu_4:12.1.0-3 gettext_0.21-6 gettext-base_0.21-6 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libasan8_12.1.0-7 libasan8-amd64-cross_12.1.0-7cross1 libatomic1_12.1.0-7 libatomic1-amd64-cross_12.1.0-7cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2 libblkid1_2.38-5 libbz2-1.0_1.0.8-5 libc-bin_2.33-8 libc-dev-bin_2.33-8 libc6_2.33-8 libc6-amd64-cross_2.33-1cross1 libc6-dev_2.33-8 libc6-dev-amd64-cross_2.33-1cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.1.0-7 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.8 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.9 libelf1_0.187-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-12-dev_12.1.0-7 libgcc-12-dev-amd64-cross_12.1.0-7cross1 libgcc-s1_12.1.0-7 libgcc-s1-amd64-cross_12.1.0-7cross1 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.6-2 libgomp1_12.1.0-7 libgomp1-amd64-cross_12.1.0-7cross1 libgpg-error0_1.45-2 libgprofng0_2.38.90.20220713-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.7.3-1 libhwasan0_12.1.0-7 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.1.0-7 libitm1-amd64-cross_12.1.0-7cross1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.1.0-7 liblsan0-amd64-cross_12.1.0-7cross1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-5 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13 libpam-modules-bin_1.4.0-13 libpam-runtime_1.4.0-13 libpam0g_1.4.0-13 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-1 libquadmath0_12.1.0-7 libquadmath0-amd64-cross_12.1.0-7cross1 libreadline8_8.1.2-1.2 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b1 libsemanage-common_3.4-1 libsemanage2_3.4-1+b1 libsepol2_3.4-2 libsigsegv2_2.14-1 libsmartcols1_2.38-5 libssl3_3.0.5-1 libstdc++-12-dev_12.1.0-7 libstdc++-12-dev-amd64-cross_12.1.0-7cross1 libstdc++6_12.1.0-7 libstdc++6-amd64-cross_12.1.0-7cross1 libsub-override-perl_0.09-3 libsystemd0_251.3-1 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-4 libtsan2_12.1.0-7 libtsan2-amd64-cross_12.1.0-7cross1 libubsan1_12.1.0-7 libubsan1-amd64-cross_12.1.0-7cross1 libuchardet0_0.0.7-1 libudev1_251.3-1 libunistring2_1.0-1 libuuid1_2.38-5 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-2 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1 linux-libc-dev-amd64-cross_5.15.5-1cross1 login_1:4.11.1+dfsg1-2 lsb-base_11.2 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-5 mummer_3.23+dfsg-7 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 util-linux_2.38-5 util-linux-extra_2.38-5 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fsa Binary: fsa Architecture: any Version: 1.15.9+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://fsa.sourceforge.net/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/fsa Vcs-Git: https://salsa.debian.org/med-team/fsa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man Package-List: fsa deb science optional arch=any Checksums-Sha1: bff4c2f27d54db9891d70e2e314bafecf801cabb 558688 fsa_1.15.9+dfsg.orig.tar.xz 2116b756b7959867ce6ceb71a6d40c6acf9b459e 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Checksums-Sha256: c3a845122e08f5e3c0fb96ef5133270a386c4ac6198856fc56aa2a796c0a6377 558688 fsa_1.15.9+dfsg.orig.tar.xz 5c2cbb013a79debd8c1ca15e9cf3f9b76ad8f171e76b326a9e70823fd36cff37 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Files: 8d6b1b18195dc5262113b1d363de88bf 558688 fsa_1.15.9+dfsg.orig.tar.xz b3b6cac1bebbb24ce81be6891155f3bc 13444 fsa_1.15.9+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+xYDYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE2aA//WlYn1kr0gp4xWVFytdACx6kvqmiEdStg sHIKciMkegewKTBdInLZ58tckLKWO8r+2W8FOEujrElAc+UXbzBKNg0HySHXHhM2 thUttzpZz2yREAI5Skl70FDrKPcCT36swjJbXWZRddLd7bYTnnPBAVv6KWa/U8aw B7f2d8RP9BGxdzu5HckPSHq/U4kzy0gjS9ywP4O+LKEx5SNiTzufLxjSXMNZE/ah tuCWgy/vxTTZt6iTRyEANwV2bnznvXyLa2HT2/GWuztLXICptqaNsL/qm9G/w0AL oCC8OcO0kbMBw03TUKSr0ASM6uMPGNwFtubVHeV0tRRRiuJaVqdgtwFGnmfpA8pK 4YrkltuKRt8d4H1CogTksxWVmyb/2TPG/QRwiX9UYJaTZRRVCKL1sPBJm6AMkVmt qNOs3REsLMdEezAV0wWWEDTJJBlyNKO6pLGCLcakgkd85t+AUg7iZIa+iRtL4xxX JtYSlkILVw0xVHWr8O+c2MsOMGpOBhWJKOTs0l54IFwszyLyk1F8s/b0CcNZrA45 t0XYBYEUTuC1z+K44ECzvtOxZLdgvpznJ1pDbBHmDlixI10m4xxQx8RXKEHVl11e jqRCsuLP6u+fehNQqn6X/vhtay8TtKxlYMz5ts47y4HBBO4F0j2/JvzgHR0QPcb3 YbYYMtXghso= =Zh/E -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.RumDzp3t/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 15 17:07:02 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./fsa_1.15.9+dfsg-6.dsc dpkg-source: info: extracting fsa in /<> dpkg-source: info: unpacking fsa_1.15.9+dfsg.orig.tar.xz dpkg-source: info: unpacking fsa_1.15.9+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-display.patch dpkg-source: info: applying removed-pdf-only-docs.patch dpkg-source: info: applying privacy_breach_logo.patch dpkg-source: info: applying fixed-check-for-m64-flag.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-9e17d92e-3408-43cf-83da-de7bcb9cff9b SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fsa dpkg-buildpackage: info: source version 1.15.9+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:42: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:42: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:42: the top level configure.in:47: warning: The macro `AC_HEADER_TIME' is obsolete. configure.in:47: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.in:47: the top level configure.in:60: warning: The macro `AC_LANG_CPLUSPLUS' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/c.m4:262: AC_LANG_CPLUSPLUS is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:60: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:268: warning: AC_OUTPUT should be used without arguments. configure.in:268: You should run autoupdate. dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1002' is supported by ustar format... yes checking whether GID '1002' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... none checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking the archiver (x86_64-linux-gnu-ar) interface... ar checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of x86_64-linux-gnu-gcc... (cached) none checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of x86_64-linux-gnu-g++... none checking for gawk... (cached) gawk checking whether make sets $(MAKE)... (cached) yes checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking for unsigned long long int... yes checking for uintmax_t... yes checking for ptrdiff_t... yes checking for tr1/unordered_map... yes checking for tr1/unordered_set... yes checking for fork... yes checking for vfork... yes checking for working fork... cross configure: WARNING: result yes guessed because of cross compilation checking for working vfork... (cached) yes checking for floor... yes checking for memmove... yes checking for pow... yes checking for regcomp... yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strspn... yes checking for strstr... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... x86_64-pc-linux-gnu checking if gcc accepts -m64... yes checking for mummer... /usr/bin/mummer checking for exonerate... /usr/bin/exonerate checking for x86_64-linux-gnu-g++ options needed to detect all undeclared functions... none needed checking for struct sysinfo.totalram... yes checking for struct sysinfo.mem_unit... yes checking whether sysctl is declared... no checking whether CTL_HW is declared... no checking whether HW_PHYSMEM is declared... no checking for javac... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/main/Makefile config.status: creating src/manager/Makefile config.status: creating src/fsa/Makefile config.status: creating src/annealing/Makefile config.status: creating src/math/Makefile config.status: creating src/util/Makefile config.status: creating src/seq/Makefile config.status: creating perl/Makefile config.status: creating examples/Makefile config.status: creating html/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands -- FSA 1.15.9 Configuration Results -- C++ compiler: x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG GCC version: x86_64-linux-gnu-gcc (Debian 12.1.0-7) 12.1.0 Host System type: x86_64-pc-linux-gnu Install prefix: /usr See config.h for further configuration information. Email with questions and bug reports. dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src/util make[3]: Entering directory '/<>/src/util' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dexception.o dexception.cc In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from dexception.cc:4: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/util/sstring.h:5: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o logfile.o logfile.cc In file included from ../../src/util/logfile.h:13, from logfile.cc:1: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/istream:38, from /usr/x86_64-linux-gnu/include/c++/12/fstream:38, from ../../src/util/logfile.h:8: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o memcheck.o memcheck.cc x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o misc.o misc.cc In file included from misc.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/ostream:38, from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from ../../src/util/misc.h:14: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o opts_list.o opts_list.cc opts_list.cc:99:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 99 | SET_VERSION_INFO(*this); | ^ In file included from opts_list.cc:2: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ opts_list.cc:99:3: note: in expansion of macro ‘SET_VERSION_INFO’ 99 | SET_VERSION_INFO(*this); | ^~~~~~~~~~~~~~~~ In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from ../../src/util/opts_list.h:10: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/ostream:38, from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from ../../src/util/opts_list.h:4: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o regexp.o regexp.cc regexp.cc: In member function ‘char* CRegCompilerBase::regatom(int*)’: regexp.cc:995:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 995 | register char ch; | ^~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sstring.o sstring.cc In file included from ../../src/util/sstring.h:14, from sstring.cc:5: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/util/sstring.h:5: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libutil.a x86_64-linux-gnu-ar cru libutil.a dexception.o logfile.o memcheck.o misc.o opts_list.o regexp.o sstring.o x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') x86_64-linux-gnu-ranlib libutil.a make[3]: Leaving directory '/<>/src/util' Making all in src/math make[3]: Entering directory '/<>/src/math' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mathematics.o mathematics.cc In file included from ../../src/math/mathematics.h:23, from mathematics.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/refwrap.h:39, from /usr/x86_64-linux-gnu/include/c++/12/vector:66, from ../../src/math/mathematics.h:13: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mst.o mst.cc In file included from ../../src/math/mst.h:11, from mst.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/ostream:38, from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from ../../src/util/misc.h:14: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libmath.a x86_64-linux-gnu-ar cru libmath.a mathematics.o mst.o x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') x86_64-linux-gnu-ranlib libmath.a make[3]: Leaving directory '/<>/src/math' Making all in src/seq make[3]: Entering directory '/<>/src/seq' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alphabet.o alphabet.cc In file included from ../../src/seq/alphabet.h:20, from alphabet.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/seq/alphabet.h:15: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment.o alignment.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from alignment.cc:13: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/numeric:74, from alignment.cc:8: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ alignment.cc: In member function ‘void fsa::Alignment::read_mfa(const std::string&, bool, bool)’: alignment.cc:295:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:295:31: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ alignment.cc: In member function ‘void fsa::Stockholm::read_stockholm(const std::string&, bool, bool)’: alignment.cc:732:40: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:732:26: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gff.o gff.cc In file included from ../../src/math/mathematics.h:23, from gff.cc:14: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/istream:38, from /usr/x86_64-linux-gnu/include/c++/12/fstream:38, from gff.cc:8: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from gff.cc:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mercator.o mercator.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from ../../src/seq/mercator.h:13, from mercator.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/numeric:74, from mercator.cc:9: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence.o sequence.cc In file included from ../../src/math/mathematics.h:23, from sequence.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/util/regexp.h:8, from sequence.cc:10: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from sequence.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o similarity_matrix.o similarity_matrix.cc In file included from ../../src/math/mathematics.h:23, from similarity_matrix.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/ostream:38, from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from similarity_matrix.cc:8: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/seq/similarity_matrix.h:13, from similarity_matrix.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libseq.a x86_64-linux-gnu-ar cru libseq.a alphabet.o alignment.o gff.o mercator.o sequence.o similarity_matrix.o x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') x86_64-linux-gnu-ranlib libseq.a make[3]: Leaving directory '/<>/src/seq' Making all in src/manager make[3]: Entering directory '/<>/src/manager' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o manager.o manager.cc In file included from ../../src/manager/manager.h:12, from manager.cc:6: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from manager.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mw_adapter.o mw_adapter.cc x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_adapter.o db_adapter.cc x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_misc.o db_misc.cc In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71, from db_misc.cc:7: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ rm -f libmanager.a x86_64-linux-gnu-ar cru libmanager.a manager.o mw_adapter.o db_adapter.o db_misc.o x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') x86_64-linux-gnu-ranlib libmanager.a make[3]: Leaving directory '/<>/src/manager' Making all in src/fsa make[3]: Entering directory '/<>/src/fsa' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o algebras.o algebras.cc In file included from algebras.cc:27: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoacid_indel2dp.o aminoacid_indel2dp.cc In file included from aminoacid_indel2dp.h:28, from aminoacid_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoacid_indel2dp.cc: In function ‘Algebra Forward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidIndel2AlignBaumWelch&, AminoAcidIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1039:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1039 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1041:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1041 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra Backward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1373:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1373 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1375:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1375 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1320:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1320 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra ForwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1622:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1622 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1624:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1624 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1568:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1568 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidIndel2AlignWithBandingBaumWelch&, AminoAcidIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1877:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1877 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1879:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1879 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:2243:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2243 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:2245:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2245 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:2189:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2189 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoaciddp.o aminoaciddp.cc In file included from aminoaciddp.h:28, from aminoaciddp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoaciddp.cc: In function ‘Algebra Forward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidAlignBaumWelch&, AminoAcidAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1009:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1009 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1011:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1011 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra Backward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1283:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1283 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1285:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1285 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1230:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1230 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra ForwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1502:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1502 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1504:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1504 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1448:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1448 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidAlignWithBandingBaumWelch&, AminoAcidAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1727:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1727 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1729:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1729 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:2033:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2033 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:2035:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2035 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1979:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1979 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o anchors.o anchors.cc In file included from ../../src/fsa/anchors.h:17, from anchors.cc:16: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ anchors.cc: In member function ‘fsa::Anchors fsa::Exonerate_adapter::call_exonerate(const std::string&, const std::string&, int) const’: anchors.cc:863:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 863 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store exonerate results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:864:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 864 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc: In member function ‘fsa::Anchors fsa::Mummer_adapter::call_mummer(const std::string&, const std::string&, size_t) const’: anchors.cc:1100:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1100 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store mummer results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:1101:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1101 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o constraints.o constraints.cc x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o fsa.o fsa.cc fsa.cc:25:125: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^ In file included from ../../src/fsa/fsa.h:66, from fsa.cc:11: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ ../../src/util/opts_list.h:152:153: note: in expansion of macro ‘SET_VERSION_INFO’ 152 | #define INIT_CONSTRUCTED_OPTS_LIST(OPTS,ARGS,SYNTAX,SHORTDESC) OPTS.short_description = (SHORTDESC); OPTS.syntax = (SYNTAX); OPTS.expect_args = (ARGS); SET_VERSION_INFO(OPTS); Log_stream::add_opts(OPTS); | ^~~~~~~~~~~~~~~~ fsa.cc:25:3: note: in expansion of macro ‘INIT_CONSTRUCTED_OPTS_LIST’ 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o model.o model.cc In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from model.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ In file included from ../../src/fsa/model.h:32: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotide_indel2dp.o nucleotide_indel2dp.cc In file included from nucleotide_indel2dp.h:28, from nucleotide_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotide_indel2dp.cc: In function ‘Algebra Forward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideIndel2AlignBaumWelch&, NucleotideIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:975:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 975 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:977:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 977 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra Backward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:1277:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1277 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1279:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1279 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1256:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1256 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra ForwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1494:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1494 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1496:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1496 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1472:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1472 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideIndel2AlignWithBandingBaumWelch&, NucleotideIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1717:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1717 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1719:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1719 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:2051:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2051 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:2053:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2053 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:2029:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2029 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotidedp.o nucleotidedp.cc In file included from nucleotidedp.h:28, from nucleotidedp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotidedp.cc: In function ‘Algebra Forward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideAlignBaumWelch&, NucleotideAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:945:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 945 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:947:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 947 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra Backward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:1187:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1187 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1189:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1189 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1166:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1166 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra ForwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1374:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1374 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1376:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1376 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1352:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1352 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideAlignWithBandingBaumWelch&, NucleotideAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1567:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1567 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1569:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1569 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1841:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1841 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1843:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1843 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1819:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1819 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence_pair_selector.o sequence_pair_selector.cc rm -f libfsa.a x86_64-linux-gnu-ar cru libfsa.a algebras.o aminoacid_indel2dp.o aminoaciddp.o anchors.o constraints.o fsa.o model.o nucleotide_indel2dp.o nucleotidedp.o sequence_pair_selector.o x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') x86_64-linux-gnu-ranlib libfsa.a make[3]: Leaving directory '/<>/src/fsa' Making all in src/annealing make[3]: Entering directory '/<>/src/annealing' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment_DAG.o alignment_DAG.cc In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from alignment_DAG.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/refwrap.h:39, from /usr/x86_64-linux-gnu/include/c++/12/deque:65, from /usr/x86_64-linux-gnu/include/c++/12/stack:60, from ../../src/annealing/alignment_DAG.h:39: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dotplot.o dotplot.cc In file included from dotplot.h:13, from dotplot.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/ostream:38, from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from ../../src/util/misc.h:14: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from dotplot.h:14: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:45: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from dotplot.h:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o tree_weights.o tree_weights.cc In file included from ../../src/util/logfile.h:13, from tree_weights.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/istream:38, from /usr/x86_64-linux-gnu/include/c++/12/fstream:38, from ../../src/util/logfile.h:8: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/annealing/tree_weights.h:18, from tree_weights.cc:9: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libannealing.a x86_64-linux-gnu-ar cru libannealing.a alignment_DAG.o dotplot.o tree_weights.o x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') x86_64-linux-gnu-ranlib libannealing.a make[3]: Leaving directory '/<>/src/annealing' Making all in src/main make[3]: Entering directory '/<>/src/main' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o main.o main.cc In file included from /usr/x86_64-linux-gnu/include/c++/12/ext/hash_map:60, from ../../src/fsa/dptables.h:43, from ../../src/fsa/mybanding.h:25, from ../../src/fsa/model.h:24, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from main.cc:8: /usr/x86_64-linux-gnu/include/c++/12/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../../src/fsa/fsa.h:65: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/ostream:38, from /usr/x86_64-linux-gnu/include/c++/12/iostream:39, from ../../src/fsa/fsa.h:61: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/fsa/fsa.h:68: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/dotplot.h:14, from ../../src/fsa/anchors.h:16: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:45: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/fsa/anchors.h:17: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/anchors.h:18: ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o fsa main.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gapcleaner.o gapcleaner.cc In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from gapcleaner.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/refwrap.h:39, from /usr/x86_64-linux-gnu/include/c++/12/deque:65, from /usr/x86_64-linux-gnu/include/c++/12/stack:60, from ../../src/annealing/alignment_DAG.h:39: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o gapcleaner gapcleaner.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o isect_mercator_alignment_gff.o isect_mercator_alignment_gff.cc In file included from ../../src/seq/gff.h:17, from isect_mercator_alignment_gff.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/istream:38, from /usr/x86_64-linux-gnu/include/c++/12/fstream:38, from isect_mercator_alignment_gff.cc:9: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from isect_mercator_alignment_gff.cc:13: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o isect_mercator_alignment_gff isect_mercator_alignment_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_coords.o map_coords.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from map_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/bits/stl_tree.h:65, from /usr/x86_64-linux-gnu/include/c++/12/set:60, from ../../src/seq/alignment.h:13: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_coords map_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_gff_coords.o map_gff_coords.cc In file included from ../../src/seq/gff.h:17, from map_gff_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/seq/gff.h:12: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from map_gff_coords.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_gff_coords map_gff_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o percentid.o percentid.cc In file included from ../../src/seq/sequence.h:19, from percentid.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/seq/sequence.h:13: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o percentid percentid.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o prot2codon.o prot2codon.cc In file included from ../../src/seq/sequence.h:19, from prot2codon.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/seq/sequence.h:13: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o prot2codon prot2codon.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta.o slice_fasta.cc In file included from ../../src/seq/sequence.h:19, from slice_fasta.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/seq/sequence.h:13: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta slice_fasta.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta_gff.o slice_fasta_gff.cc In file included from ../../src/seq/gff.h:17, from slice_fasta_gff.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/seq/gff.h:12: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from slice_fasta_gff.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta_gff slice_fasta_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_mercator_alignment.o slice_mercator_alignment.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from slice_mercator_alignment.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from /usr/x86_64-linux-gnu/include/c++/12/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/12/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/12/ios:42, from /usr/x86_64-linux-gnu/include/c++/12/istream:38, from /usr/x86_64-linux-gnu/include/c++/12/fstream:38, from slice_mercator_alignment.cc:9: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_mercator_alignment slice_mercator_alignment.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o translate.o translate.cc In file included from ../../src/seq/sequence.h:19, from translate.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/12/string:48, from ../../src/seq/sequence.h:13: /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wall -Wno-tautological-compare -m64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o translate translate.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a make[3]: Leaving directory '/<>/src/main' Making all in perl make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/perl' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' Making all in html make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/html' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/fsa/ -a make -j1 install DESTDIR=/<>/fsa-1.15.9\+dfsg/debian/fsa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src/util make[2]: Entering directory '/<>/src/util' make[3]: Entering directory '/<>/src/util' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/util' make[2]: Leaving directory '/<>/src/util' Making install in src/math make[2]: Entering directory '/<>/src/math' make[3]: Entering directory '/<>/src/math' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/math' make[2]: Leaving directory '/<>/src/math' Making install in src/seq make[2]: Entering directory '/<>/src/seq' make[3]: Entering directory '/<>/src/seq' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/seq' make[2]: Leaving directory '/<>/src/seq' Making install in src/manager make[2]: Entering directory '/<>/src/manager' make[3]: Entering directory '/<>/src/manager' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/manager' make[2]: Leaving directory '/<>/src/manager' Making install in src/fsa make[2]: Entering directory '/<>/src/fsa' make[3]: Entering directory '/<>/src/fsa' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/fsa' make[2]: Leaving directory '/<>/src/fsa' Making install in src/annealing make[2]: Entering directory '/<>/src/annealing' make[3]: Entering directory '/<>/src/annealing' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/annealing' make[2]: Leaving directory '/<>/src/annealing' Making install in src/main make[2]: Entering directory '/<>/src/main' make[3]: Entering directory '/<>/src/main' /bin/mkdir -p '/<>/debian/fsa/usr/bin' /usr/bin/install -c fsa gapcleaner isect_mercator_alignment_gff map_coords map_gff_coords percentid prot2codon slice_fasta slice_fasta_gff slice_mercator_alignment translate '/<>/debian/fsa/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/main' make[2]: Leaving directory '/<>/src/main' Making install in perl make[2]: Entering directory '/<>/perl' make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/perl' make[2]: Leaving directory '/<>/perl' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' Making install in html make[2]: Entering directory '/<>/html' make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/html' make[2]: Leaving directory '/<>/html' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mv /<>/debian/fsa/usr/bin/translate /<>/debian/fsa/usr/bin/fsa-translate make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'fsa' in '../fsa_1.15.9+dfsg-6_amd64.deb'. dpkg-deb: building package 'fsa-dbgsym' in '../fsa-dbgsym_1.15.9+dfsg-6_amd64.deb'. # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate dpkg-genbuildinfo --build=any -O../fsa_1.15.9+dfsg-6_amd64.buildinfo dpkg-genchanges --build=any -O../fsa_1.15.9+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-07-27T23:26:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fsa_1.15.9+dfsg-6_amd64.changes: -------------------------------- Format: 1.8 Date: Sun, 15 Nov 2020 17:45:20 +0100 Source: fsa Binary: fsa fsa-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 1.15.9+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fsa - Fast Statistical Alignment of protein, RNA or DNA sequences Changes: fsa (1.15.9+dfsg-6) unstable; urgency=medium . * Fix typo Checksums-Sha1: 81a3952d6912fea312d0bd437c8edd5153796a90 16261760 fsa-dbgsym_1.15.9+dfsg-6_amd64.deb 8a27391af0998b7da659e6597b19267094957199 5207 fsa_1.15.9+dfsg-6_amd64.buildinfo 63c6371fc71a69d4384f6f9e2e3efb63b2ed857b 709260 fsa_1.15.9+dfsg-6_amd64.deb Checksums-Sha256: d0cbe0104ea83a2d2596eaa0573f3e25ab50d58687eddf3055dece0b88f2f058 16261760 fsa-dbgsym_1.15.9+dfsg-6_amd64.deb 5cf5c7e463ae12484b6f3ea0ba08e140b1b9c83344dd7cc5a9ee012b7ba969bc 5207 fsa_1.15.9+dfsg-6_amd64.buildinfo 8f7418bd33191451872dbf85ef47a3f531a58a29681af95e25179999634c5a52 709260 fsa_1.15.9+dfsg-6_amd64.deb Files: 8f18169057908c7fb57d979b2a522716 16261760 debug optional fsa-dbgsym_1.15.9+dfsg-6_amd64.deb 49cd0f9dcfaa5d223da237097b92bf55 5207 science optional fsa_1.15.9+dfsg-6_amd64.buildinfo 0d15222d25679835b44dada17bc4cb16 709260 science optional fsa_1.15.9+dfsg-6_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fsa Binary: fsa fsa-dbgsym Architecture: amd64 Version: 1.15.9+dfsg-6 Checksums-Md5: 8f18169057908c7fb57d979b2a522716 16261760 fsa-dbgsym_1.15.9+dfsg-6_amd64.deb 0d15222d25679835b44dada17bc4cb16 709260 fsa_1.15.9+dfsg-6_amd64.deb Checksums-Sha1: 81a3952d6912fea312d0bd437c8edd5153796a90 16261760 fsa-dbgsym_1.15.9+dfsg-6_amd64.deb 63c6371fc71a69d4384f6f9e2e3efb63b2ed857b 709260 fsa_1.15.9+dfsg-6_amd64.deb Checksums-Sha256: d0cbe0104ea83a2d2596eaa0573f3e25ab50d58687eddf3055dece0b88f2f058 16261760 fsa-dbgsym_1.15.9+dfsg-6_amd64.deb 8f7418bd33191451872dbf85ef47a3f531a58a29681af95e25179999634c5a52 709260 fsa_1.15.9+dfsg-6_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 27 Jul 2022 23:26:01 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6.1), binutils (= 2.38.90.20220713-2), binutils-aarch64-linux-gnu (= 2.38.90.20220713-2), binutils-common (= 2.38.90.20220713-2), bsdextrautils (= 2.38-5), bsdutils (= 1:2.38-5), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:12.1.0-3), cpp-12 (= 12.1.0-7), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.8), debianutils (= 5.7-0.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14-1), exonerate (= 2.4.0-5), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.1.0-3), g++-12 (= 12.1.0-7), gawk (= 1:5.1.0-1), gcc (= 4:12.1.0-3), gcc-12 (= 12.1.0-7), gcc-12-base (= 12.1.0-7), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), help2man (= 1.49.2), hostname (= 3.23), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.1.0-7), libatomic1 (= 12.1.0-7), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38.90.20220713-2), libblkid1 (= 2.38-5), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-8), libc-dev-bin (= 2.33-8), libc6 (= 2.33-8), libc6-dev (= 2.33-8), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.1.0-7), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.38.90.20220713-2), libctf0 (= 2.38.90.20220713-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.263), libdebhelper-perl (= 13.8), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-12-dev (= 12.1.0-7), libgcc-s1 (= 12.1.0-7), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libglib2.0-0 (= 2.72.3-1), libgmp10 (= 2:6.2.1+dfsg1-1), libgomp1 (= 12.1.0-7), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.90.20220713-2), libgssapi-krb5-2 (= 1.20-1), libicu71 (= 71.1-3), libisl23 (= 0.25-1), libitm1 (= 12.1.0-7), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblocale-gettext-perl (= 1.07-4+b2), liblsan0 (= 12.1.0-7), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-5), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-13), libpam-modules-bin (= 1.4.0-13), libpam-runtime (= 1.4.0-13), libpam0g (= 1.4.0-13), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-1), libquadmath0 (= 12.1.0-7), libreadline8 (= 8.1.2-1.2), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsigsegv2 (= 2.14-1), libsmartcols1 (= 2.38-5), libssl3 (= 3.0.5-1), libstdc++-12-dev (= 12.1.0-7), libstdc++6 (= 12.1.0-7), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.3-1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.7-4), libtsan2 (= 12.1.0-7), libubsan1 (= 12.1.0-7), libuchardet0 (= 0.0.7-1), libudev1 (= 251.3-1), libunistring2 (= 1.0-1), libuuid1 (= 2.38-5), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.18.14-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), mummer (= 3.23+dfsg-7), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.03-1), tar (= 1.34+dfsg-1), util-linux (= 2.38-5), util-linux-extra (= 2.38-5), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605458720" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fsa-dbgsym_1.15.9+dfsg-6_amd64.deb ---------------------------------- new Debian package, version 2.0. size 16261760 bytes: control archive=1096 bytes. 778 bytes, 12 lines control 1246 bytes, 12 lines md5sums Package: fsa-dbgsym Source: fsa Version: 1.15.9+dfsg-6 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 16687 Depends: fsa (= 1.15.9+dfsg-6) Section: debug Priority: optional Description: debug symbols for fsa Build-Ids: 285156bbfb76605428bbc098c7d94bb74d938a6d 2a4b2f897660ddaf0072c2bb4838564d785f166a 3fd31b709d0f0f5024754e8f7c3e0aa5bb1c22ba 52465126670657239efa0a93a19ed50ca84faa04 561c6de8b4ea4f83e47d1c71770fd7706291382e 5be8eb1d7400d65c3d284de76a8f6015d8a647fd 671777f376e91c0219dcfd9d4e64319a9c2d6fc0 722a0ba8bd916725fe6e467b6015ddce9cfdb8f5 9a5a794ded92db88dad88acb81233025e355ac2e a6cef7cea533dfd99a6ffeb91ff6fba41929c9b5 d09a4428d70cf248592545de88088f39c8eced9d drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/28/ -rw-r--r-- root/root 1757776 2020-11-15 16:45 ./usr/lib/debug/.build-id/28/5156bbfb76605428bbc098c7d94bb74d938a6d.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/2a/ -rw-r--r-- root/root 1396584 2020-11-15 16:45 ./usr/lib/debug/.build-id/2a/4b2f897660ddaf0072c2bb4838564d785f166a.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 716072 2020-11-15 16:45 ./usr/lib/debug/.build-id/3f/d31b709d0f0f5024754e8f7c3e0aa5bb1c22ba.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/52/ -rw-r--r-- root/root 685096 2020-11-15 16:45 ./usr/lib/debug/.build-id/52/465126670657239efa0a93a19ed50ca84faa04.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/56/ -rw-r--r-- root/root 1371416 2020-11-15 16:45 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./usr/lib/debug/.build-id/a6/cef7cea533dfd99a6ffeb91ff6fba41929c9b5.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/d0/ -rw-r--r-- root/root 1411088 2020-11-15 16:45 ./usr/lib/debug/.build-id/d0/9a4428d70cf248592545de88088f39c8eced9d.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 974360 2020-11-15 16:45 ./usr/lib/debug/.dwz/x86_64-linux-gnu/fsa.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa-dbgsym -> fsa fsa_1.15.9+dfsg-6_amd64.deb --------------------------- new Debian package, version 2.0. size 709260 bytes: control archive=2716 bytes. 2334 bytes, 40 lines control 3513 bytes, 49 lines md5sums Package: fsa Version: 1.15.9+dfsg-6 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 4299 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), mummer, exonerate Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: http://fsa.sourceforge.net/ Description: Fast Statistical Alignment of protein, RNA or DNA sequences FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using only pairwise estimations of homology. This is made possible by the sequence annealing technique for constructing a multiple alignment from pairwise comparisons, developed by Ariel Schwartz. . FSA brings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such as aligning thousands of sequences or megabase-long sequences. FSA introduces several novel methods for constructing better alignments: * FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of input sequences. This "query-specific learning" alignment method makes FSA very robust: it can produce superior alignments of sets of homologous sequences which are subject to very different evolutionary constraints. * FSA is capable of aligning hundreds or even thousands of sequences using a randomized inference algorithm to reduce the computational cost of multiple alignment. This randomized inference can be over ten times faster than a direct approach with little loss of accuracy. * FSA can quickly align very long sequences using the "anchor annealing" technique for resolving anchors and projecting them with transitive anchoring. It then stitches together the alignment between the anchors using the methods described above. * The included GUI, MAD (Multiple Alignment Display), can display the intermediate alignments produced by FSA, where each character is colored according to the probability that it is correctly aligned drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/bin/ -rwxr-xr-x root/root 1178432 2020-11-15 16:45 ./usr/bin/fsa -rwxr-xr-x root/root 158624 2020-11-15 16:45 ./usr/bin/fsa-translate -rwxr-xr-x root/root 404384 2020-11-15 16:45 ./usr/bin/gapcleaner -rwxr-xr-x root/root 281760 2020-11-15 16:45 ./usr/bin/isect_mercator_alignment_gff -rwxr-xr-x root/root 281664 2020-11-15 16:45 ./usr/bin/map_coords -rwxr-xr-x root/root 281760 2020-11-15 16:45 ./usr/bin/map_gff_coords -rwxr-xr-x root/root 158624 2020-11-15 16:45 ./usr/bin/percentid -rwxr-xr-x root/root 158624 2020-11-15 16:45 ./usr/bin/prot2codon -rwxr-xr-x root/root 162720 2020-11-15 16:45 ./usr/bin/slice_fasta -rwxr-xr-x root/root 207808 2020-11-15 16:45 ./usr/bin/slice_fasta_gff -rwxr-xr-x root/root 281760 2020-11-15 16:45 ./usr/bin/slice_mercator_alignment drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/translate -> ../../../bin/fsa-translate drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/translate.1.gz -> ../../../../../share/man/man1/fsa-translate.1.gz drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/ -rw-r--r-- root/root 24437 2020-11-15 16:45 ./usr/share/doc/fsa/FAQ.html -rw-r--r-- root/root 5889 2014-05-16 17:25 ./usr/share/doc/fsa/README.gz -rw-r--r-- root/root 696 2020-11-15 16:45 ./usr/share/doc/fsa/changelog.Debian.gz -rw-r--r-- root/root 3603 2020-11-15 16:45 ./usr/share/doc/fsa/copyright drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/examples/ -rw-r--r-- root/root 1244 2012-03-22 17:09 ./usr/share/doc/fsa/examples/README -rw-r--r-- root/root 1505 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta -rw-r--r-- root/root 33181 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.gui -rw-r--r-- root/root 393175 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.probs -rw-r--r-- root/root 1547 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.mfa -rw-r--r-- root/root 1546 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.mfa -rw-r--r-- root/root 1543 2012-03-22 17:09 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17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.probs -rw-r--r-- root/root 488 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.mfa -rw-r--r-- root/root 492 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.mfa -rw-r--r-- root/root 1185 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.stock -rw-r--r-- root/root 639 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.stock -rw-r--r-- root/root 266 2012-03-22 17:09 ./usr/share/doc/fsa/pretty.css drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/man1/ -rw-r--r-- root/root 402 2020-11-15 16:45 ./usr/share/man/man1/fsa-translate.1.gz -rw-r--r-- root/root 393 2020-11-15 16:45 ./usr/share/man/man1/fsa.1.gz -rw-r--r-- root/root 467 2020-11-15 16:45 ./usr/share/man/man1/gapcleaner.1.gz -rw-r--r-- root/root 1077 2020-11-15 16:45 ./usr/share/man/man1/isect_mercator_alignment_gff.1.gz -rw-r--r-- root/root 695 2020-11-15 16:45 ./usr/share/man/man1/map_coords.1.gz -rw-r--r-- root/root 1074 2020-11-15 16:45 ./usr/share/man/man1/map_gff_coords.1.gz -rw-r--r-- root/root 378 2020-11-15 16:45 ./usr/share/man/man1/percentid.1.gz -rw-r--r-- root/root 411 2020-11-15 16:45 ./usr/share/man/man1/prot2codon.1.gz -rw-r--r-- root/root 443 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta.1.gz -rw-r--r-- root/root 533 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta_gff.1.gz -rw-r--r-- root/root 870 2020-11-15 16:45 ./usr/share/man/man1/slice_mercator_alignment.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [554 B] Get:5 copy:/<>/apt_archive ./ Packages [640 B] Fetched 2157 B in 0s (51.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-server-simple-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-server-simple-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://mirror.einval.org/debian sid/main arm64 netbase all 6.3 [19.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 openssl arm64 3.0.5-1 [1392 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 ca-certificates all 20211016 [156 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-4 [48.9 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.35-3 [570 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.39.2-1 [786 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.35-3 [916 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 iso-codes all 4.11.0-1 [2834 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-2 [14.2 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40+b1 [69.2 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-2 [11.2 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-2 [13.1 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b3 [15.8 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-2 [25.4 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-2 [8044 B] Get:21 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-2 [44.3 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 libberkeleydb-perl arm64 0.64-1+b2 [120 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:27 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.12-1 [93.7 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libhtml-parser-perl arm64 3.78-1 [103 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libcgi-pm-perl all 4.54-1 [224 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:31 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b8 [36.4 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b2 [15.3 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b2 [25.2 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-2 [11.0 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:40 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.30-1 [128 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-3 [36.7 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.02-1 [34.6 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-2 [33.7 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2 [103 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b3 [25.8 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b4 [26.7 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libencode-locale-perl all 1.05-2 [13.5 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B] Get:63 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:64 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-2 [28.4 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libhtml-form-perl all 6.07-1 [22.9 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:78 http://mirror.einval.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.92-2 [338 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libio-socket-ssl-perl all 2.074-2 [220 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libwww-perl all 6.67-1 [194 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libhttp-server-simple-perl all 0.52-2 [29.4 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 liblz1 arm64 1.13-4 [40.8 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libmldbm-perl all 2.05-3 [18.8 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:102 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b2 [171 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-2 [11.9 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b2 [13.5 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.20-1 [17.1 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1+b1 [11.9 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1+b1 [46.4 kB] Get:111 http://mirror.einval.org/debian sid/main arm64 libregexp-wildcards-perl all 1.05-2 [14.1 kB] Get:112 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.023+ds-1 [95.0 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.023+ds-1 [97.9 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.25-1 [52.2 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.27-1 [28.2 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b3 [27.2 kB] Get:118 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-5 [8704 B] Get:119 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1+b1 [13.4 kB] Get:120 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1+b1 [194 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b4 [74.7 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b3 [19.8 kB] Get:124 http://mirror.einval.org/debian sid/main arm64 libwww-mechanize-perl all 2.12-1 [118 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:126 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1+b1 [34.4 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 plzip arm64 1.10-4 [60.7 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:132 http://mirror.einval.org/debian sid/main arm64 lintian all 2.115.2 [1416 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.8 MB in 0s (48.8 MB/s) Selecting previously unselected package netbase. (Reading database ... 19216 files and directories currently installed.) Preparing to unpack .../000-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.5-1_arm64.deb ... Unpacking openssl (3.0.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../004-libassuan0_2.5.5-4_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.35-3_arm64.deb ... Unpacking gpgconf (2.2.35-3) ... Selecting previously unselected package libsqlite3-0:arm64. 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Preparing to unpack .../012-libdynaloader-functions-perl_0.003-2_all.deb ... Unpacking libdynaloader-functions-perl (0.003-2) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../013-libdevel-callchecker-perl_0.008-1+b3_arm64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b3) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../014-libparams-classify-perl_0.015-2_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../015-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../016-libtry-tiny-perl_0.31-1_all.deb ... Unpacking libtry-tiny-perl (0.31-1) ... Selecting previously unselected package libmodule-implementation-perl. 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Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../028-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../029-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../030-libclass-xsaccessor-perl_1.19-3+b8_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b8) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../031-libclone-perl_0.45-1+b2_arm64.deb ... Unpacking libclone-perl (0.45-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../032-libconfig-tiny-perl_2.28-1_all.deb ... Unpacking libconfig-tiny-perl (2.28-1) ... Selecting previously unselected package libparams-util-perl. 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Setting up liblz1:arm64 (1.13-4) ... Setting up libberkeleydb-perl:arm64 (0.64-1+b2) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:arm64 (4.30-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b3) ... Setting up unzip (6.0-26) ... Setting up libsqlite3-0:arm64 (3.39.2-1) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b4) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:arm64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:arm64 (4.023+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.25-1) ... Setting up libfile-find-rule-perl (0.34-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-2) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2) ... Setting up liblist-moreutils-xs-perl (0.430-3) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl (0.26-1+b2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.35-3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-2) ... Setting up libaliased-perl (0.34-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b8) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.5-1) ... Setting up libtext-levenshteinxs-perl (0.03-5) ... Setting up libperlio-gzip-perl (0.20-1) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.023+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.12-1) ... Setting up iso-codes (4.11.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.35-3) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.92-2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.78-1) ... Setting up libio-socket-ssl-perl (2.074-2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.07-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:arm64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhttp-server-simple-perl (0.52-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.12-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Processing triggers for libc-bin (2.33-8) ... Processing triggers for man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for sgml-base (1.30) ... Setting up lintian (2.115.2) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 218180 Build-Time: 523 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 68 Job: fsa_1.15.9+dfsg-6 Lintian: pass Machine Architecture: arm64 Package: fsa Package-Time: 634 Source-Version: 1.15.9+dfsg-6 Space: 218180 Status: successful Version: 1.15.9+dfsg-6 -------------------------------------------------------------------------------- Finished at 2022-07-27T23:26:03Z Build needed 00:10:34, 218180k disk space