sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | fsa 1.15.9+dfsg-6 (armhf) Tue, 09 Jan 2024 13:57:36 +0000 | +==============================================================================+ Package: fsa Version: 1.15.9+dfsg-6 Source Version: 1.15.9+dfsg-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-e434e9dc-c574-4e9e-97ff-c5a34b9896e9' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-cY3kbS/resolver-1hJM85' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-09-0805.28-F-2024-01-09-0209.22.pdiff [25.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-09-0805.28-F-2024-01-09-0209.22.pdiff [31.7 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-09-0805.28-F-2024-01-09-0209.22.pdiff [25.3 kB] Get:6 http://localhost:3142/debian sid/main armhf Packages [9220 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-09-0805.28-F-2024-01-09-0209.22.pdiff [31.7 kB] Fetched 9602 kB in 3s (3623 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fsa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fsa.git Please use: git clone https://salsa.debian.org/med-team/fsa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 574 kB of source archives. Get:1 http://localhost:3142/debian sid/main fsa 1.15.9+dfsg-6 (dsc) [1971 B] Get:2 http://localhost:3142/debian sid/main fsa 1.15.9+dfsg-6 (tar) [559 kB] Get:3 http://localhost:3142/debian sid/main fsa 1.15.9+dfsg-6 (diff) [13.4 kB] Fetched 574 kB in 1s (423 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fsa-cY3kbS/fsa-1.15.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-cY3kbS' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [743 B] Get:5 copy:/<>/apt_archive ./ Packages [786 B] Fetched 2138 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:armhf file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gawk gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libblkid1:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libglib2.0-0:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu72 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libmount1:armhf libnsl-dev:armhf libnsl2:armhf libpcre2-8-0:armhf libpipeline1 libreadline8 libselinux1:armhf libsigsegv2 libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross m4 man-db mummer:armhf po-debconf readline-common sensible-utils ucf zlib1g:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch wise:armhf gcc-13-doc gawk-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf low-memory-monitor:armhf krb5-doc:armhf krb5-user:armhf cryptsetup-bin:armhf libstdc++-11-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data:armhf shared-mime-info:armhf xdg-user-dirs:armhf krb5-locales:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:armhf file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gawk gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libblkid1:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libglib2.0-0:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu72 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libmount1:armhf libnsl-dev:armhf libnsl2:armhf libpcre2-8-0:armhf libpipeline1 libreadline8 libselinux1:armhf libsigsegv2 libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross m4 man-db mummer:armhf po-debconf readline-common sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 89.9 MB of archives. After this operation, 339 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:3 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:4 http://localhost:3142/debian sid/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 gawk amd64 1:5.2.1-2 [673 kB] Get:6 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:9 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:10 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:12 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:13 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:14 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:16 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:17 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:18 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:19 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:20 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:22 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:23 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.41.50.20231227-1 [3222 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf-base amd64 13.2.0-7cross2 [41.0 kB] Get:25 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabihf amd64 13.2.0-7cross2 [9284 kB] Get:26 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:13.2.0-2 [4172 B] Get:27 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:28 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:29 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.37-12cross1 [868 kB] Get:30 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 13.2.0-7cross2 [36.5 kB] Get:31 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 13.2.0-7cross2 [103 kB] Get:32 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 13.2.0-7cross2 [6752 B] Get:33 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 13.2.0-7cross2 [2410 kB] Get:34 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 13.2.0-7cross2 [546 kB] Get:35 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 13.2.0-7cross2 [967 kB] Get:36 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armhf-cross all 13.2.0-7cross2 [782 kB] Get:37 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf amd64 13.2.0-7cross2 [18.2 MB] Get:38 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:13.2.0-2 [1476 B] Get:39 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 6.5.8-1cross1 [1975 kB] Get:40 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.37-12cross1 [1265 kB] Get:41 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armhf-cross all 13.2.0-7cross2 [2214 kB] Get:42 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabihf amd64 13.2.0-7cross2 [10.2 MB] Get:43 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:13.2.0-2 [1180 B] Get:44 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:45 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:51 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:52 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:54 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:58 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.10 [3484 B] Get:60 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.9 [82.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:67 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:68 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:69 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:70 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:71 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:72 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.9 [956 kB] Get:73 http://localhost:3142/debian sid/main armhf gcc-13-base armhf 13.2.0-9 [41.4 kB] Get:74 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 13.2.0-9 [36.5 kB] Get:75 http://localhost:3142/debian sid/main armhf libc6 armhf 2.37-13 [2125 kB] Get:76 http://localhost:3142/debian sid/main armhf libffi8 armhf 3.4.4-2 [19.8 kB] Get:77 http://localhost:3142/debian sid/main armhf libblkid1 armhf 2.39.3-6 [144 kB] Get:78 http://localhost:3142/debian sid/main armhf libpcre2-8-0 armhf 10.42-4 [227 kB] Get:79 http://localhost:3142/debian sid/main armhf libselinux1 armhf 3.5-1+b2 [65.0 kB] Get:80 http://localhost:3142/debian sid/main armhf libmount1 armhf 2.39.3-6 [171 kB] Get:81 http://localhost:3142/debian sid/main armhf zlib1g armhf 1:1.3.dfsg-3 [74.4 kB] Get:82 http://localhost:3142/debian sid/main armhf libglib2.0-0 armhf 2.78.3-1 [1282 kB] Get:83 http://localhost:3142/debian sid/main armhf exonerate armhf 2.4.0-5 [1391 kB] Get:84 http://localhost:3142/debian sid/main armhf gcc-11-base armhf 11.4.0-7 [40.3 kB] Get:85 http://localhost:3142/debian sid/main amd64 help2man amd64 1.49.3 [198 kB] Get:86 http://localhost:3142/debian sid/main armhf libasan6 armhf 11.4.0-7 [1970 kB] Get:87 http://localhost:3142/debian sid/main armhf libatomic1 armhf 13.2.0-9 [7012 B] Get:88 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-4 [96.1 kB] Get:89 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-4 [125 kB] Get:90 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20.1-5 [30.0 kB] Get:91 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.47.0-2+b1 [19.3 kB] Get:92 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20.1-5 [74.8 kB] Get:93 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-2+b2 [8096 B] Get:94 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.1.4-2 [1681 kB] Get:95 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20.1-5 [287 kB] Get:96 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20.1-5 [111 kB] Get:97 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.4+ds-1 [70.0 kB] Get:98 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-3 [33.7 kB] Get:99 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.4+ds-1 [179 kB] Get:100 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-3 [61.8 kB] Get:101 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.37-13 [1268 kB] Get:102 http://localhost:3142/debian sid/main armhf libgomp1 armhf 13.2.0-9 [105 kB] Get:103 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 13.2.0-9 [593 kB] Get:104 http://localhost:3142/debian sid/main armhf libubsan1 armhf 13.2.0-9 [968 kB] Get:105 http://localhost:3142/debian sid/main armhf libgcc-11-dev armhf 11.4.0-7 [711 kB] Get:106 http://localhost:3142/debian sid/main armhf libstdc++-11-dev armhf 11.4.0-7 [1995 kB] Get:107 http://localhost:3142/debian sid/main armhf mummer armhf 3.23+dfsg-8 [627 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 89.9 MB in 1s (178 MB/s) Selecting previously unselected package readline-common. (Reading database ... 16251 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../libreadline8_8.2-3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.14-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1) ... Setting up readline-common (8.2-3) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libsigsegv2:amd64 (2.14-1) ... Selecting previously unselected package gawk. (Reading database ... 16284 files and directories currently installed.) Preparing to unpack .../000-gawk_1%3a5.2.1-2_amd64.deb ... Unpacking gawk (1:5.2.1-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../001-liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... 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Setting up gcc-11-base:armhf (11.4.0-7) ... Setting up libfile-which-perl (1.27-2) ... Setting up libc6-armhf-cross (2.37-12cross1) ... Setting up libicu72:amd64 (72.1-4) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up gawk (1:5.2.1-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.9) ... Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:armhf (13.2.0-9) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up linux-libc-dev-armhf-cross (6.5.8-1cross1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-arm-linux-gnueabihf-base:amd64 (13.2.0-7cross2) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up binutils-arm-linux-gnueabihf (2.41.50.20231227-1) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (13.2.0-7cross2) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-7cross2) ... Setting up libtool (2.4.7-7) ... Setting up libgcc-s1-armhf-cross (13.2.0-7cross2) ... Setting up libc6-dev-armhf-cross (2.37-12cross1) ... Setting up libatomic1-armhf-cross (13.2.0-7cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (13.2.0-7cross2) ... Setting up libubsan1-armhf-cross (13.2.0-7cross2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-2) ... Setting up libasan8-armhf-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-armhf-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-armhf-cross (13.2.0-7cross2) ... Setting up debhelper (13.11.9) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-2) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-7cross2) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armhf (12.10) ... Setting up libgcc-s1:armhf (13.2.0-9) ... Setting up libc6:armhf (2.37-13) ... Setting up libffi8:armhf (3.4.4-2) ... Setting up libblkid1:armhf (2.39.3-6) ... Setting up libstdc++6:armhf (13.2.0-9) ... Setting up libkeyutils1:armhf (1.6.3-2+b2) ... Setting up libssl3:armhf (3.1.4-2) ... Setting up zlib1g:armhf (1:1.3.dfsg-3) ... Setting up libcrypt1:armhf (1:4.4.36-4) ... Setting up libcom-err2:armhf (1.47.0-2+b1) ... Setting up libgomp1:armhf (13.2.0-9) ... Setting up libasan6:armhf (11.4.0-7) ... Setting up libkrb5support0:armhf (1.20.1-5) ... Setting up libatomic1:armhf (13.2.0-9) ... Setting up libpcre2-8-0:armhf (10.42-4) ... Setting up libk5crypto3:armhf (1.20.1-5) ... Setting up libubsan1:armhf (13.2.0-9) ... Setting up libgcc-11-dev:armhf (11.4.0-7) ... Setting up libcrypt-dev:armhf (1:4.4.36-4) ... Setting up mummer:armhf (3.23+dfsg-8) ... Setting up libkrb5-3:armhf (1.20.1-5) ... Setting up libselinux1:armhf (3.5-1+b2) ... Setting up libgssapi-krb5-2:armhf (1.20.1-5) ... Setting up libmount1:armhf (2.39.3-6) ... Setting up libtirpc3:armhf (1.3.4+ds-1) ... Setting up libglib2.0-0:armhf (2.78.3-1) ... /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 42: /usr/lib/arm-linux-gnueabihf/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:armhf.postinst: 43: /usr/lib/arm-linux-gnueabihf/glib-2.0/gio-querymodules: Exec format error Setting up libtirpc-dev:armhf (1.3.4+ds-1) ... Setting up libnsl2:armhf (1.3.0-3) ... Setting up exonerate:armhf (2.4.0-5) ... Setting up libnsl-dev:armhf (1.3.0-3) ... Setting up libc6-dev:armhf (2.37-13) ... Setting up libstdc++-11-dev:armhf (11.4.0-7) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231227-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-armhf-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-armhf-cross_13.2.0-7cross2 linux-libc-dev_6.6.9-1 Package versions: adduser_3.137 apt_2.7.8 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.50.20231227-1 binutils-arm-linux-gnueabihf_2.41.50.20231227-1 binutils-common_2.41.50.20231227-1 binutils-x86-64-linux-gnu_2.41.50.20231227-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-arm-linux-gnueabihf_13.2.0-7cross2 cpp-arm-linux-gnueabihf_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-armhf_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 exonerate_2.4.0-5 fakeroot_1.32.2-1+b1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-arm-linux-gnueabihf_13.2.0-7cross2 g++-arm-linux-gnueabihf_4:13.2.0-2 gawk_1:5.2.1-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-arm-linux-gnueabihf_13.2.0-7cross2 gcc-13-arm-linux-gnueabihf-base_13.2.0-7cross2 gcc-13-base_13.2.0-9 gcc-13-cross-base_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-arm-linux-gnueabihf_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 help2man_1.49.3 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-4 libapt-pkg6.0_2.7.8 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-armhf-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-armhf-cross_13.2.0-7cross2 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231227-1 libblkid1_2.39.3-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-armhf-cross_2.37-12cross1 libc6-dev_2.37-13 libc6-dev-armhf-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41.50.20231227-1 libctf0_2.41.50.20231227-1 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.2 libelf1_0.190-1+b1 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1+b1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-9 libgcc-13-dev-armhf-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-armhf-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libglib2.0-0_2.78.3-1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-armhf-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231227-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-9 libicu72_72.1-4 libidn2-0_2.3.4-1+b2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_13.2.0-9 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2+b2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblocale-gettext-perl_1.07-6 liblsan0_13.2.0-9 liblz4-1_1.9.4-1+b2 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-10+b1 libpipeline1_1.5.7-1+b2 libquadmath0_13.2.0-9 libreadline8_8.2-3 libseccomp2_2.5.5-1 libselinux1_3.5-1+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b2 libsepol2_3.5-2 libsframe1_2.41.50.20231227-1 libsigsegv2_2.14-1 libsmartcols1_2.39.3-6 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-armhf-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-armhf-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.2-4 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-9 libubsan1_13.2.0-9 libubsan1-armhf-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255.2-4 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.9-1 linux-libc-dev-armhf-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-6 mummer_3.23+dfsg-8 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.36.0-10+b1 perl-base_5.36.0-10+b1 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-10 po-debconf_1.0.21+nmu1 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-2 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fsa Binary: fsa Architecture: any Version: 1.15.9+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://fsa.sourceforge.net/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/fsa Vcs-Git: https://salsa.debian.org/med-team/fsa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man Package-List: fsa deb science optional arch=any Checksums-Sha1: bff4c2f27d54db9891d70e2e314bafecf801cabb 558688 fsa_1.15.9+dfsg.orig.tar.xz 2116b756b7959867ce6ceb71a6d40c6acf9b459e 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Checksums-Sha256: c3a845122e08f5e3c0fb96ef5133270a386c4ac6198856fc56aa2a796c0a6377 558688 fsa_1.15.9+dfsg.orig.tar.xz 5c2cbb013a79debd8c1ca15e9cf3f9b76ad8f171e76b326a9e70823fd36cff37 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Files: 8d6b1b18195dc5262113b1d363de88bf 558688 fsa_1.15.9+dfsg.orig.tar.xz b3b6cac1bebbb24ce81be6891155f3bc 13444 fsa_1.15.9+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+xYDYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE2aA//WlYn1kr0gp4xWVFytdACx6kvqmiEdStg sHIKciMkegewKTBdInLZ58tckLKWO8r+2W8FOEujrElAc+UXbzBKNg0HySHXHhM2 thUttzpZz2yREAI5Skl70FDrKPcCT36swjJbXWZRddLd7bYTnnPBAVv6KWa/U8aw B7f2d8RP9BGxdzu5HckPSHq/U4kzy0gjS9ywP4O+LKEx5SNiTzufLxjSXMNZE/ah tuCWgy/vxTTZt6iTRyEANwV2bnznvXyLa2HT2/GWuztLXICptqaNsL/qm9G/w0AL oCC8OcO0kbMBw03TUKSr0ASM6uMPGNwFtubVHeV0tRRRiuJaVqdgtwFGnmfpA8pK 4YrkltuKRt8d4H1CogTksxWVmyb/2TPG/QRwiX9UYJaTZRRVCKL1sPBJm6AMkVmt qNOs3REsLMdEezAV0wWWEDTJJBlyNKO6pLGCLcakgkd85t+AUg7iZIa+iRtL4xxX JtYSlkILVw0xVHWr8O+c2MsOMGpOBhWJKOTs0l54IFwszyLyk1F8s/b0CcNZrA45 t0XYBYEUTuC1z+K44ECzvtOxZLdgvpznJ1pDbBHmDlixI10m4xxQx8RXKEHVl11e jqRCsuLP6u+fehNQqn6X/vhtay8TtKxlYMz5ts47y4HBBO4F0j2/JvzgHR0QPcb3 YbYYMtXghso= =Zh/E -----END PGP SIGNATURE----- gpgv: Signature made Sun Nov 15 17:07:02 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fsa_1.15.9+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting fsa in /<> dpkg-source: info: unpacking fsa_1.15.9+dfsg.orig.tar.xz dpkg-source: info: unpacking fsa_1.15.9+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-display.patch dpkg-source: info: applying removed-pdf-only-docs.patch dpkg-source: info: applying privacy_breach_logo.patch dpkg-source: info: applying fixed-check-for-m64-flag.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.r5jjLkxezA/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-e434e9dc-c574-4e9e-97ff-c5a34b9896e9 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fsa dpkg-buildpackage: info: source version 1.15.9+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate debian/rules binary-arch dh binary-arch dh_update_autotools_config -a cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:42: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:42: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:42: the top level configure.in:47: warning: The macro `AC_HEADER_TIME' is obsolete. configure.in:47: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.in:47: the top level configure.in:60: warning: The macro `AC_LANG_CPLUSPLUS' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/c.m4:262: AC_LANG_CPLUSPLUS is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:60: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:268: warning: AC_OUTPUT should be used without arguments. configure.in:268: You should run autoupdate. dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1000' is supported by ustar format... yes checking whether GID '1000' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking dependency style of arm-linux-gnueabihf-gcc... none checking for arm-linux-gnueabihf-ar... arm-linux-gnueabihf-ar checking the archiver (arm-linux-gnueabihf-ar) interface... ar checking for arm-linux-gnueabihf-gcc... (cached) arm-linux-gnueabihf-gcc checking whether the compiler supports GNU C... (cached) yes checking whether arm-linux-gnueabihf-gcc accepts -g... (cached) yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... (cached) none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... (cached) yes checking dependency style of arm-linux-gnueabihf-gcc... (cached) none checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed checking dependency style of arm-linux-gnueabihf-g++... none checking for gawk... (cached) gawk checking whether make sets $(MAKE)... (cached) yes checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking for unsigned long long int... yes checking for uintmax_t... yes checking for ptrdiff_t... yes checking for tr1/unordered_map... yes checking for tr1/unordered_set... yes checking for fork... yes checking for vfork... yes checking for working fork... cross configure: WARNING: result yes guessed because of cross compilation checking for working vfork... (cached) yes checking for floor... yes checking for memmove... yes checking for pow... yes checking for regcomp... yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strspn... yes checking for strstr... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking if gcc accepts -m64... no checking for mummer... /usr/bin/mummer checking for exonerate... /usr/bin/exonerate checking for arm-linux-gnueabihf-g++ options needed to detect all undeclared functions... none needed checking for struct sysinfo.totalram... yes checking for struct sysinfo.mem_unit... yes checking whether sysctl is declared... no checking whether CTL_HW is declared... no checking whether HW_PHYSMEM is declared... no checking for javac... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/main/Makefile config.status: creating src/manager/Makefile config.status: creating src/fsa/Makefile config.status: creating src/annealing/Makefile config.status: creating src/math/Makefile config.status: creating src/util/Makefile config.status: creating src/seq/Makefile config.status: creating perl/Makefile config.status: creating examples/Makefile config.status: creating html/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands -- FSA 1.15.9 Configuration Results -- C++ compiler: arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG GCC version: arm-linux-gnueabihf-gcc (Debian 13.2.0-7) 13.2.0 Host System type: arm-unknown-linux-gnueabihf Install prefix: /usr See config.h for further configuration information. Email with questions and bug reports. dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src/util make[3]: Entering directory '/<>/src/util' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o dexception.o dexception.cc In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from dexception.cc:4: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/util/sstring.h:5: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o logfile.o logfile.cc In file included from ../../src/util/logfile.h:13, from logfile.cc:1: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/istream:40, from /usr/arm-linux-gnueabihf/include/c++/13/fstream:40, from ../../src/util/logfile.h:8: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o memcheck.o memcheck.cc arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o misc.o misc.cc In file included from misc.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/ostream:40, from /usr/arm-linux-gnueabihf/include/c++/13/iostream:41, from ../../src/util/misc.h:14: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o opts_list.o opts_list.cc opts_list.cc:99:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 99 | SET_VERSION_INFO(*this); | ^ In file included from opts_list.cc:2: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ opts_list.cc:99:3: note: in expansion of macro ‘SET_VERSION_INFO’ 99 | SET_VERSION_INFO(*this); | ^~~~~~~~~~~~~~~~ In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from ../../src/util/opts_list.h:10: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/ostream:40, from /usr/arm-linux-gnueabihf/include/c++/13/iostream:41, from ../../src/util/opts_list.h:4: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o regexp.o regexp.cc regexp.cc: In member function ‘char* CRegCompilerBase::regatom(int*)’: regexp.cc:995:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 995 | register char ch; | ^~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o sstring.o sstring.cc In file included from ../../src/util/sstring.h:14, from sstring.cc:5: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/util/sstring.h:5: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libutil.a arm-linux-gnueabihf-ar cru libutil.a dexception.o logfile.o memcheck.o misc.o opts_list.o regexp.o sstring.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-ranlib libutil.a make[3]: Leaving directory '/<>/src/util' Making all in src/math make[3]: Entering directory '/<>/src/math' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o mathematics.o mathematics.cc In file included from ../../src/math/mathematics.h:23, from mathematics.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/refwrap.h:39, from /usr/arm-linux-gnueabihf/include/c++/13/vector:68, from ../../src/math/mathematics.h:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o mst.o mst.cc In file included from ../../src/math/mst.h:11, from mst.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/ostream:40, from /usr/arm-linux-gnueabihf/include/c++/13/iostream:41, from ../../src/util/misc.h:14: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libmath.a arm-linux-gnueabihf-ar cru libmath.a mathematics.o mst.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-ranlib libmath.a make[3]: Leaving directory '/<>/src/math' Making all in src/seq make[3]: Entering directory '/<>/src/seq' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o alphabet.o alphabet.cc In file included from ../../src/seq/alphabet.h:20, from alphabet.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/seq/alphabet.h:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o alignment.o alignment.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from alignment.cc:13: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/numeric:75, from alignment.cc:8: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ alignment.cc: In member function ‘void fsa::Alignment::read_mfa(const std::string&, bool, bool)’: alignment.cc:295:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:295:31: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ alignment.cc: In member function ‘void fsa::Stockholm::read_stockholm(const std::string&, bool, bool)’: alignment.cc:732:40: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:732:26: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o gff.o gff.cc In file included from ../../src/math/mathematics.h:23, from gff.cc:14: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/istream:40, from /usr/arm-linux-gnueabihf/include/c++/13/fstream:40, from gff.cc:8: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from gff.cc:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o mercator.o mercator.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from ../../src/seq/mercator.h:13, from mercator.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/numeric:75, from mercator.cc:9: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from ../../src/seq/sequence.h:16: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘std::vector fsa::Mercator_map::choose_random_intervals(const std::string&, size_t, size_t) const’ at mercator.cc:249:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o sequence.o sequence.cc In file included from ../../src/math/mathematics.h:23, from sequence.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/util/regexp.h:8, from sequence.cc:10: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from sequence.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o similarity_matrix.o similarity_matrix.cc In file included from ../../src/math/mathematics.h:23, from similarity_matrix.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/ostream:40, from /usr/arm-linux-gnueabihf/include/c++/13/iostream:41, from similarity_matrix.cc:8: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/seq/similarity_matrix.h:13, from similarity_matrix.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libseq.a arm-linux-gnueabihf-ar cru libseq.a alphabet.o alignment.o gff.o mercator.o sequence.o similarity_matrix.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-ranlib libseq.a make[3]: Leaving directory '/<>/src/seq' Making all in src/manager make[3]: Entering directory '/<>/src/manager' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o manager.o manager.cc In file included from ../../src/manager/manager.h:12, from manager.cc:6: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from manager.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o mw_adapter.o mw_adapter.cc arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o db_adapter.o db_adapter.cc arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o db_misc.o db_misc.cc In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71, from db_misc.cc:7: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ rm -f libmanager.a arm-linux-gnueabihf-ar cru libmanager.a manager.o mw_adapter.o db_adapter.o db_misc.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-ranlib libmanager.a make[3]: Leaving directory '/<>/src/manager' Making all in src/fsa make[3]: Entering directory '/<>/src/fsa' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o algebras.o algebras.cc In file included from algebras.cc:27: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o aminoacid_indel2dp.o aminoacid_indel2dp.cc In file included from aminoacid_indel2dp.h:28, from aminoacid_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoacid_indel2dp.cc: In function ‘Algebra Forward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidIndel2AlignBaumWelch&, AminoAcidIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1039:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1039 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1041:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1041 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra Backward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1373:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1373 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1375:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1375 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1320:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1320 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra ForwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1622:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1622 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1624:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1624 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1568:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1568 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidIndel2AlignWithBandingBaumWelch&, AminoAcidIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1877:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1877 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1879:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1879 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:2243:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2243 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:2245:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2245 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:2189:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2189 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o aminoaciddp.o aminoaciddp.cc In file included from aminoaciddp.h:28, from aminoaciddp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoaciddp.cc: In function ‘Algebra Forward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidAlignBaumWelch&, AminoAcidAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1009:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1009 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1011:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1011 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra Backward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1283:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1283 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1285:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1285 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1230:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1230 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra ForwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1502:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1502 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1504:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1504 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1448:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1448 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidAlignWithBandingBaumWelch&, AminoAcidAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1727:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1727 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1729:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1729 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:2033:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2033 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:2035:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2035 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1979:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1979 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o anchors.o anchors.cc In file included from ../../src/fsa/anchors.h:17, from anchors.cc:16: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ anchors.cc: In member function ‘fsa::Anchors fsa::Exonerate_adapter::call_exonerate(const std::string&, const std::string&, int) const’: anchors.cc:863:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 863 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store exonerate results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:864:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 864 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc: In member function ‘fsa::Anchors fsa::Mummer_adapter::call_mummer(const std::string&, const std::string&, size_t) const’: anchors.cc:1100:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1100 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store mummer results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:1101:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1101 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from ../../src/seq/sequence.h:16, from ../../src/seq/alignment.h:16, from anchors.cc:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = fsa::Anchor; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:315:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 315 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:315:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = fsa::Anchor; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 751 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const fsa::Anchor&}; _Tp = fsa::Anchor; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘static fsa::Anchors fsa::Anchors::convert_constraints_to_anchors(const fsa::Constraints&, const fsa::Sequence&, const fsa::Sequence&, bool)’ at anchors.cc:164:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘static fsa::Anchors fsa::Anchors::convert_constraints_to_anchors(const fsa::Constraints&, const fsa::Sequence&, const fsa::Sequence&, bool)’ at anchors.cc:165:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘fsa::Anchors fsa::Cabbage_adapter::get_candidate_anchors() const’ at anchors.cc:762:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘fsa::Anchors fsa::Cabbage_adapter::get_candidate_anchors() const’ at anchors.cc:763:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘fsa::Anchors fsa::Cabbage_adapter::get_candidate_anchors() const’ at anchors.cc:764:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘void fsa::Anchors::enforce_immutable_unique()’ at anchors.cc:425:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘void fsa::Anchors::enforce_immutable_unique()’ at anchors.cc:443:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::enforce_immutable_unique()’ at anchors.cc:450:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:826:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 826 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘void fsa::Anchors::remove_overlaps(size_t, unsigned int)’ at anchors.cc:668:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::remove_overlaps(size_t, unsigned int)’ at anchors.cc:672:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:826:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 826 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘fsa::Anchors fsa::Mummer_adapter::get_candidate_anchors(size_t) const’ at anchors.cc:994:18: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from anchors.cc:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1854 | __final_insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = fsa::Anchor; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const fsa::Anchor&, const fsa::Anchor&)]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘bool fsa::Anchors::resolve_parallel(size_t, bool)’ at anchors.cc:244:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘bool fsa::Anchors::resolve_parallel(size_t, bool)’ at anchors.cc:268:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘bool fsa::Anchors::resolve_parallel(size_t, bool)’ at anchors.cc:384:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘bool fsa::Anchors::resolve_parallel(size_t, bool)’ at anchors.cc:390:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:826:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 826 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const fsa::Anchor&, const fsa::Anchor&)]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void fsa::Anchors::remove_overlaps(size_t)’ at anchors.cc:460:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const fsa::Anchor&, const fsa::Anchor&)]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void fsa::Anchors::remove_overlaps(size_t)’ at anchors.cc:464:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const fsa::Anchor&, const fsa::Anchor&)]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void fsa::Anchors::remove_overlaps(size_t)’ at anchors.cc:468:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const fsa::Anchor&, const fsa::Anchor&)]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void fsa::Anchors::remove_overlaps(size_t)’ at anchors.cc:472:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchors&)’ at ../../src/fsa/anchors.h:474:24, inlined from ‘const std::vector fsa::Anchor_resolver::get_resolved_anchors(const fsa::Tree_weights&, size_t, size_t, bool, bool, int, bool, bool, size_t, bool, std::string) const’ at anchors.cc:1246:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1483 | _M_range_insert(begin() + __offset, __first, __last, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1484 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchors&)’ at ../../src/fsa/anchors.h:474:24, inlined from ‘const std::vector fsa::Anchor_resolver::get_resolved_anchors(const fsa::Tree_weights&, size_t, size_t, bool, bool, int, bool, bool, size_t, bool, std::string) const’ at anchors.cc:1253:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1483 | _M_range_insert(begin() + __offset, __first, __last, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1484 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘const std::vector fsa::Anchor_resolver::get_resolved_anchors(const fsa::Tree_weights&, size_t, size_t, bool, bool, int, bool, bool, size_t, bool, std::string) const’ at anchors.cc:1459:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = fsa::Anchor; _Alloc = std::allocator]’, inlined from ‘void fsa::Anchors::store(const fsa::Anchor&)’ at ../../src/fsa/anchors.h:467:27, inlined from ‘const std::vector fsa::Anchor_resolver::get_resolved_anchors(const fsa::Tree_weights&, size_t, size_t, bool, bool, int, bool, bool, size_t, bool, std::string) const’ at anchors.cc:1464:37: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o constraints.o constraints.cc arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o fsa.o fsa.cc fsa.cc:25:125: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^ In file included from ../../src/fsa/fsa.h:66, from fsa.cc:11: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ ../../src/util/opts_list.h:152:153: note: in expansion of macro ‘SET_VERSION_INFO’ 152 | #define INIT_CONSTRUCTED_OPTS_LIST(OPTS,ARGS,SYNTAX,SHORTDESC) OPTS.short_description = (SHORTDESC); OPTS.syntax = (SYNTAX); OPTS.expect_args = (ARGS); SET_VERSION_INFO(OPTS); Log_stream::add_opts(OPTS); | ^~~~~~~~~~~~~~~~ fsa.cc:25:3: note: in expansion of macro ‘INIT_CONSTRUCTED_OPTS_LIST’ 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from ../../src/util/misc.h:17, from ../../src/math/mst.h:11, from fsa.cc:9: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:315:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 315 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:315:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void fsa::FSA::init_subst_params(fsa::Params&, const std::vector&, unsigned int, double)’ at fsa.cc:668:33: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:826:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 826 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void fsa::FSA::init_subst_params(fsa::Params&, const std::vector&, unsigned int, double)’ at fsa.cc:747:33: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:826:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 826 | { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o model.o model.cc In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from model.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ In file included from ../../src/fsa/model.h:32: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o nucleotide_indel2dp.o nucleotide_indel2dp.cc In file included from nucleotide_indel2dp.h:28, from nucleotide_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotide_indel2dp.cc: In function ‘Algebra Forward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideIndel2AlignBaumWelch&, NucleotideIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:975:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 975 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:977:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 977 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra Backward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:1277:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1277 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1279:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1279 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1256:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1256 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra ForwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1494:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1494 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1496:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1496 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1472:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1472 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideIndel2AlignWithBandingBaumWelch&, NucleotideIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1717:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1717 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1719:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1719 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:2051:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2051 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:2053:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2053 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:2029:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2029 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o nucleotidedp.o nucleotidedp.cc In file included from nucleotidedp.h:28, from nucleotidedp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotidedp.cc: In function ‘Algebra Forward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideAlignBaumWelch&, NucleotideAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:945:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 945 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:947:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 947 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra Backward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:1187:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1187 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1189:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1189 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1166:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1166 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra ForwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1374:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1374 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1376:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1376 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1352:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1352 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideAlignWithBandingBaumWelch&, NucleotideAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1567:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1567 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1569:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1569 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1841:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1841 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1843:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1843 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1819:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1819 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o sequence_pair_selector.o sequence_pair_selector.cc In file included from /usr/arm-linux-gnueabihf/include/c++/13/queue:64, from sequence_pair_selector.cc:8: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/arm-linux-gnueabihf/include/c++/13/queue:63: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector >; _Compare = fsa::Util::Duple_less]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_queue.h:748:13, inlined from ‘void fsa::Sequence_pair_selector::choose_kmer_similarity(size_t)’ at sequence_pair_selector.cc:248:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libfsa.a arm-linux-gnueabihf-ar cru libfsa.a algebras.o aminoacid_indel2dp.o aminoaciddp.o anchors.o constraints.o fsa.o model.o nucleotide_indel2dp.o nucleotidedp.o sequence_pair_selector.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-ranlib libfsa.a make[3]: Leaving directory '/<>/src/fsa' Making all in src/annealing make[3]: Entering directory '/<>/src/annealing' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o alignment_DAG.o alignment_DAG.cc In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from alignment_DAG.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/refwrap.h:39, from /usr/arm-linux-gnueabihf/include/c++/13/deque:67, from /usr/arm-linux-gnueabihf/include/c++/13/stack:62, from ../../src/annealing/alignment_DAG.h:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ alignment_DAG.cc: In member function ‘std::pair fsa::Column::get_accuracy_normalized(std::vector >&, const fsa::Tree_weights&, size_t) const’: alignment_DAG.cc:28:174: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 28 | std::pair Column::get_accuracy_normalized (std::vector >& sparse_matrices, const Tree_weights& tree_weights, const size_t num_seqs) const { | ^~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o dotplot.o dotplot.cc In file included from dotplot.h:13, from dotplot.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/ostream:40, from /usr/arm-linux-gnueabihf/include/c++/13/iostream:41, from ../../src/util/misc.h:14: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from dotplot.h:14: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/arm-linux-gnueabihf/include/c++/13/string:47: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from dotplot.h:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o tree_weights.o tree_weights.cc In file included from ../../src/util/logfile.h:13, from tree_weights.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/istream:40, from /usr/arm-linux-gnueabihf/include/c++/13/fstream:40, from ../../src/util/logfile.h:8: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/annealing/tree_weights.h:18, from tree_weights.cc:9: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libannealing.a arm-linux-gnueabihf-ar cru libannealing.a alignment_DAG.o dotplot.o tree_weights.o arm-linux-gnueabihf-ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-ranlib libannealing.a make[3]: Leaving directory '/<>/src/annealing' Making all in src/main make[3]: Entering directory '/<>/src/main' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o main.o main.cc In file included from /usr/arm-linux-gnueabihf/include/c++/13/ext/hash_map:60, from ../../src/fsa/dptables.h:43, from ../../src/fsa/mybanding.h:25, from ../../src/fsa/model.h:24, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from main.cc:8: /usr/arm-linux-gnueabihf/include/c++/13/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../../src/fsa/fsa.h:65: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/ostream:40, from /usr/arm-linux-gnueabihf/include/c++/13/iostream:41, from ../../src/fsa/fsa.h:61: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/fsa/fsa.h:68: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/dotplot.h:14, from ../../src/fsa/anchors.h:16: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/arm-linux-gnueabihf/include/c++/13/string:47: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/fsa/anchors.h:17: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/anchors.h:18: ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o fsa main.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o gapcleaner.o gapcleaner.cc In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from gapcleaner.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/refwrap.h:39, from /usr/arm-linux-gnueabihf/include/c++/13/deque:67, from /usr/arm-linux-gnueabihf/include/c++/13/stack:62, from ../../src/annealing/alignment_DAG.h:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o gapcleaner gapcleaner.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o isect_mercator_alignment_gff.o isect_mercator_alignment_gff.cc In file included from ../../src/seq/gff.h:17, from isect_mercator_alignment_gff.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/istream:40, from /usr/arm-linux-gnueabihf/include/c++/13/fstream:40, from isect_mercator_alignment_gff.cc:9: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from isect_mercator_alignment_gff.cc:13: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o isect_mercator_alignment_gff isect_mercator_alignment_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o map_coords.o map_coords.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from map_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:65, from /usr/arm-linux-gnueabihf/include/c++/13/set:62, from ../../src/seq/alignment.h:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_coords map_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o map_gff_coords.o map_gff_coords.cc In file included from ../../src/seq/gff.h:17, from map_gff_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/seq/gff.h:12: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from map_gff_coords.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_gff_coords map_gff_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o percentid.o percentid.cc In file included from ../../src/seq/sequence.h:19, from percentid.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/seq/sequence.h:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o percentid percentid.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o prot2codon.o prot2codon.cc In file included from ../../src/seq/sequence.h:19, from prot2codon.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/seq/sequence.h:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o prot2codon prot2codon.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta.o slice_fasta.cc In file included from ../../src/seq/sequence.h:19, from slice_fasta.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/seq/sequence.h:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta slice_fasta.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta_gff.o slice_fasta_gff.cc In file included from ../../src/seq/gff.h:17, from slice_fasta_gff.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/seq/gff.h:12: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from slice_fasta_gff.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta_gff slice_fasta_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o slice_mercator_alignment.o slice_mercator_alignment.cc In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from slice_mercator_alignment.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from /usr/arm-linux-gnueabihf/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/13/ios:44, from /usr/arm-linux-gnueabihf/include/c++/13/istream:40, from /usr/arm-linux-gnueabihf/include/c++/13/fstream:40, from slice_mercator_alignment.cc:9: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_mercator_alignment slice_mercator_alignment.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -c -o translate.o translate.cc In file included from ../../src/seq/sequence.h:19, from translate.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/string:49, from ../../src/seq/sequence.h:13: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o translate translate.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a make[3]: Leaving directory '/<>/src/main' Making all in perl make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/perl' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' Making all in html make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/html' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/fsa/ -a make -j1 install DESTDIR=/<>/fsa-1.15.9\+dfsg/debian/fsa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src/util make[2]: Entering directory '/<>/src/util' make[3]: Entering directory '/<>/src/util' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/util' make[2]: Leaving directory '/<>/src/util' Making install in src/math make[2]: Entering directory '/<>/src/math' make[3]: Entering directory '/<>/src/math' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/math' make[2]: Leaving directory '/<>/src/math' Making install in src/seq make[2]: Entering directory '/<>/src/seq' make[3]: Entering directory '/<>/src/seq' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/seq' make[2]: Leaving directory '/<>/src/seq' Making install in src/manager make[2]: Entering directory '/<>/src/manager' make[3]: Entering directory '/<>/src/manager' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/manager' make[2]: Leaving directory '/<>/src/manager' Making install in src/fsa make[2]: Entering directory '/<>/src/fsa' make[3]: Entering directory '/<>/src/fsa' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/fsa' make[2]: Leaving directory '/<>/src/fsa' Making install in src/annealing make[2]: Entering directory '/<>/src/annealing' make[3]: Entering directory '/<>/src/annealing' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/annealing' make[2]: Leaving directory '/<>/src/annealing' Making install in src/main make[2]: Entering directory '/<>/src/main' make[3]: Entering directory '/<>/src/main' /usr/bin/mkdir -p '/<>/debian/fsa/usr/bin' /usr/bin/install -c fsa gapcleaner isect_mercator_alignment_gff map_coords map_gff_coords percentid prot2codon slice_fasta slice_fasta_gff slice_mercator_alignment translate '/<>/debian/fsa/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/main' make[2]: Leaving directory '/<>/src/main' Making install in perl make[2]: Entering directory '/<>/perl' make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/perl' make[2]: Leaving directory '/<>/perl' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' Making install in html make[2]: Entering directory '/<>/html' make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/html' make[2]: Leaving directory '/<>/html' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mv /<>/debian/fsa/usr/bin/translate /<>/debian/fsa/usr/bin/fsa-translate make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/fsa/usr/bin/map_gff_coords contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/slice_fasta_gff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/percentid contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/map_coords contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/slice_mercator_alignment contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/prot2codon contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/slice_fasta contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/fsa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/gapcleaner contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/fsa-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/fsa/usr/bin/isect_mercator_alignment_gff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'fsa' in '../fsa_1.15.9+dfsg-6_armhf.deb'. dpkg-deb: building package 'fsa-dbgsym' in '../fsa-dbgsym_1.15.9+dfsg-6_armhf.deb'. # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate dpkg-genbuildinfo --build=any -O../fsa_1.15.9+dfsg-6_armhf.buildinfo dpkg-genchanges --build=any -O../fsa_1.15.9+dfsg-6_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-09T14:00:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fsa_1.15.9+dfsg-6_armhf.changes: -------------------------------- Format: 1.8 Date: Sun, 15 Nov 2020 17:45:20 +0100 Source: fsa Binary: fsa fsa-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.15.9+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fsa - Fast Statistical Alignment of protein, RNA or DNA sequences Changes: fsa (1.15.9+dfsg-6) unstable; urgency=medium . * Fix typo Checksums-Sha1: bc5d8108473dd0f76d664073ee50930f19a4ca61 14612608 fsa-dbgsym_1.15.9+dfsg-6_armhf.deb b2fed1ee389a763a0cc7909f77f70204690814ac 5643 fsa_1.15.9+dfsg-6_armhf.buildinfo 193b773d8778c8e145bd0c263527b7d6b978fb98 599700 fsa_1.15.9+dfsg-6_armhf.deb Checksums-Sha256: 122afeec1ff2193786695d7680ae9c59e5e63ee8acf6d6ef506cc7ff61d1e2f3 14612608 fsa-dbgsym_1.15.9+dfsg-6_armhf.deb 7cb03758ae227cb32bceb3469e43f70aae2068eb6606122784aa35d21988cfcf 5643 fsa_1.15.9+dfsg-6_armhf.buildinfo 4abec04f02cfe21891f0b49d5bd4d752557d05f01a7ab393b00afa562005c1a6 599700 fsa_1.15.9+dfsg-6_armhf.deb Files: bc013a71a4346079793d37861f3f6209 14612608 debug optional fsa-dbgsym_1.15.9+dfsg-6_armhf.deb a39972e421f2e1b04146b334740dbadd 5643 science optional fsa_1.15.9+dfsg-6_armhf.buildinfo 58505323fdb12a588924a97e86929aab 599700 science optional fsa_1.15.9+dfsg-6_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fsa Binary: fsa fsa-dbgsym Architecture: armhf Version: 1.15.9+dfsg-6 Checksums-Md5: bc013a71a4346079793d37861f3f6209 14612608 fsa-dbgsym_1.15.9+dfsg-6_armhf.deb 58505323fdb12a588924a97e86929aab 599700 fsa_1.15.9+dfsg-6_armhf.deb Checksums-Sha1: bc5d8108473dd0f76d664073ee50930f19a4ca61 14612608 fsa-dbgsym_1.15.9+dfsg-6_armhf.deb 193b773d8778c8e145bd0c263527b7d6b978fb98 599700 fsa_1.15.9+dfsg-6_armhf.deb Checksums-Sha256: 122afeec1ff2193786695d7680ae9c59e5e63ee8acf6d6ef506cc7ff61d1e2f3 14612608 fsa-dbgsym_1.15.9+dfsg-6_armhf.deb 4abec04f02cfe21891f0b49d5bd4d752557d05f01a7ab393b00afa562005c1a6 599700 fsa_1.15.9+dfsg-6_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 09 Jan 2024 14:00:03 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.41.50.20231227-1), binutils-common (= 2.41.50.20231227-1), binutils-x86-64-linux-gnu (= 2.41.50.20231227-1), bsdextrautils (= 2.39.3-6), bsdutils (= 1:2.39.3-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), coreutils (= 9.4-3+b1), cpp (= 4:13.2.0-2), cpp-11 (= 11.4.0-7), cpp-13 (= 13.2.0-9), dash (= 0.5.12-6), debconf (= 1.5.83), debhelper (= 13.11.9), debianutils (= 5.16), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2), dpkg-dev (= 1.22.2), dwz (= 0.15-1), exonerate (= 2.4.0-5), file (= 1:5.45-2+b1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2), g++-13 (= 13.2.0-9), gawk (= 1:5.2.1-2), gcc (= 4:13.2.0-2), gcc-11 (= 11.4.0-7), gcc-11-base (= 11.4.0-7), gcc-13 (= 13.2.0-9), gcc-13-base (= 13.2.0-9), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), help2man (= 1.49.3), hostname (= 3.23+nmu1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-4), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-7), libasan8 (= 13.2.0-9), libatomic1 (= 13.2.0-9), libattr1 (= 1:2.5.1-5), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231227-1), libblkid1 (= 2.39.3-6), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-13), libc-dev-bin (= 2.37-13), libc6 (= 2.37-13), libc6-dev (= 2.37-13), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4+b2), libcc1-0 (= 13.2.0-9), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.41.50.20231227-1), libctf0 (= 2.41.50.20231227-1), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.9), libdpkg-perl (= 1.22.2), libelf1 (= 0.190-1+b1), libffi8 (= 3.4.4-2), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-7), libgcc-13-dev (= 13.2.0-9), libgcc-s1 (= 13.2.0-9), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libglib2.0-0 (= 2.78.3-1), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-9), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41.50.20231227-1), libgssapi-krb5-2 (= 1.20.1-5), libhwasan0 (= 13.2.0-9), libicu72 (= 72.1-4), libisl23 (= 0.26-3+b2), libitm1 (= 13.2.0-9), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2+b2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), liblocale-gettext-perl (= 1.07-6), liblsan0 (= 13.2.0-9), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2+b1), libmagic1 (= 1:5.45-2+b1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.2-9.1+b1), libpam-modules-bin (= 1.5.2-9.1+b1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1+b1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-10+b1), libpipeline1 (= 1.5.7-1+b2), libquadmath0 (= 13.2.0-9), libreadline8 (= 8.2-3), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-1+b2), libsframe1 (= 2.41.50.20231227-1), libsigsegv2 (= 2.14-1), libsmartcols1 (= 2.39.3-6), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-9), libstdc++6 (= 13.2.0-9), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-4), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 13.2.0-9), libubsan1 (= 13.2.0-9), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-4), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.9-1), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), mummer (= 3.23+dfsg-8), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), patch (= 2.7.6-7), perl (= 5.36.0-10+b1), perl-base (= 5.36.0-10+b1), perl-modules-5.36 (= 5.36.0-10), po-debconf (= 1.0.21+nmu1), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-5), tar (= 1.35+dfsg-2), usrmerge (= 38), util-linux (= 2.39.3-6), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1605458720" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fsa-dbgsym_1.15.9+dfsg-6_armhf.deb ---------------------------------- new Debian package, version 2.0. size 14612608 bytes: control archive=1096 bytes. 778 bytes, 12 lines control 1249 bytes, 12 lines md5sums Package: fsa-dbgsym Source: fsa Version: 1.15.9+dfsg-6 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 15048 Depends: fsa (= 1.15.9+dfsg-6) Section: debug Priority: optional Description: debug symbols for fsa Build-Ids: 0cc0e1aec07edb0aef12d5de27a6984ade744042 1d8a951b932d23b372febd03a143e0dc76d78f21 40401a9aa30431bbded2262cb2cca6c21b5bab4e 4411b0d87149a738623613e00ee2ccaec4d8dc3d 4e2e8d38f867026fd6c3e81f3364020e8b5c6a31 81cee17c073b5fda9a6839e855207b92dd239e04 8685d87afa656770c41bff01656896798f43a528 ba1cd17bfc95ac11642518b287eac4edbe325215 c05220720a1e24fec6114f767500675de2db4dad c97b7372e98b4b5d442560077ce8664ea9959ae5 e7ec4f727d12ad11f5a8b2233c2742b5728716da drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/0c/ -rw-r--r-- root/root 1268092 2020-11-15 16:45 ./usr/lib/debug/.build-id/0c/c0e1aec07edb0aef12d5de27a6984ade744042.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/1d/ -rw-r--r-- root/root 1404016 2020-11-15 16:45 ./usr/lib/debug/.build-id/1d/8a951b932d23b372febd03a143e0dc76d78f21.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/40/ -rw-r--r-- root/root 1274008 2020-11-15 16:45 ./usr/lib/debug/.build-id/40/401a9aa30431bbded2262cb2cca6c21b5bab4e.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 1318176 2020-11-15 16:45 ./usr/lib/debug/.build-id/44/11b0d87149a738623613e00ee2ccaec4d8dc3d.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/4e/ -rw-r--r-- root/root 894536 2020-11-15 16:45 ./usr/lib/debug/.build-id/4e/2e8d38f867026fd6c3e81f3364020e8b5c6a31.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/81/ -rw-r--r-- root/root 643396 2020-11-15 16:45 ./usr/lib/debug/.build-id/81/cee17c073b5fda9a6839e855207b92dd239e04.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/86/ -rw-r--r-- root/root 1312108 2020-11-15 16:45 ./usr/lib/debug/.build-id/86/85d87afa656770c41bff01656896798f43a528.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ba/ -rw-r--r-- root/root 638628 2020-11-15 16:45 ./usr/lib/debug/.build-id/ba/1cd17bfc95ac11642518b287eac4edbe325215.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/c0/ -rw-r--r-- root/root 647112 2020-11-15 16:45 ./usr/lib/debug/.build-id/c0/5220720a1e24fec6114f767500675de2db4dad.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/c9/ -rw-r--r-- root/root 4322080 2020-11-15 16:45 ./usr/lib/debug/.build-id/c9/7b7372e98b4b5d442560077ce8664ea9959ae5.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/e7/ -rw-r--r-- root/root 667124 2020-11-15 16:45 ./usr/lib/debug/.build-id/e7/ec4f727d12ad11f5a8b2233c2742b5728716da.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 990892 2020-11-15 16:45 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/fsa.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa-dbgsym -> fsa fsa_1.15.9+dfsg-6_armhf.deb --------------------------- new Debian package, version 2.0. size 599700 bytes: control archive=2720 bytes. 2336 bytes, 40 lines control 3513 bytes, 49 lines md5sums Package: fsa Version: 1.15.9+dfsg-6 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2979 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1), mummer, exonerate Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: http://fsa.sourceforge.net/ Description: Fast Statistical Alignment of protein, RNA or DNA sequences FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using only pairwise estimations of homology. This is made possible by the sequence annealing technique for constructing a multiple alignment from pairwise comparisons, developed by Ariel Schwartz. . FSA brings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such as aligning thousands of sequences or megabase-long sequences. FSA introduces several novel methods for constructing better alignments: * FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of input sequences. This "query-specific learning" alignment method makes FSA very robust: it can produce superior alignments of sets of homologous sequences which are subject to very different evolutionary constraints. * FSA is capable of aligning hundreds or even thousands of sequences using a randomized inference algorithm to reduce the computational cost of multiple alignment. This randomized inference can be over ten times faster than a direct approach with little loss of accuracy. * FSA can quickly align very long sequences using the "anchor annealing" technique for resolving anchors and projecting them with transitive anchoring. It then stitches together the alignment between the anchors using the methods described above. * The included GUI, MAD (Multiple Alignment Display), can display the intermediate alignments produced by FSA, where each character is colored according to the probability that it is correctly aligned drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/bin/ -rwxr-xr-x root/root 767840 2020-11-15 16:45 ./usr/bin/fsa -rwxr-xr-x root/root 96136 2020-11-15 16:45 ./usr/bin/fsa-translate -rwxr-xr-x root/root 251792 2020-11-15 16:45 ./usr/bin/gapcleaner -rwxr-xr-x root/root 169992 2020-11-15 16:45 ./usr/bin/isect_mercator_alignment_gff -rwxr-xr-x root/root 165848 2020-11-15 16:45 ./usr/bin/map_coords -rwxr-xr-x root/root 169992 2020-11-15 16:45 ./usr/bin/map_gff_coords -rwxr-xr-x root/root 96136 2020-11-15 16:45 ./usr/bin/percentid -rwxr-xr-x root/root 96136 2020-11-15 16:45 ./usr/bin/prot2codon -rwxr-xr-x root/root 100232 2020-11-15 16:45 ./usr/bin/slice_fasta -rwxr-xr-x root/root 124824 2020-11-15 16:45 ./usr/bin/slice_fasta_gff -rwxr-xr-x root/root 165896 2020-11-15 16:45 ./usr/bin/slice_mercator_alignment drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/translate -> ../../../bin/fsa-translate drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/translate.1.gz -> ../../../../../share/man/man1/fsa-translate.1.gz drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/ -rw-r--r-- root/root 24437 2020-11-15 16:45 ./usr/share/doc/fsa/FAQ.html -rw-r--r-- root/root 5889 2014-05-16 17:25 ./usr/share/doc/fsa/README.gz -rw-r--r-- root/root 623 2020-11-15 16:45 ./usr/share/doc/fsa/changelog.Debian.gz -rw-r--r-- root/root 3603 2020-11-15 16:45 ./usr/share/doc/fsa/copyright drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/examples/ -rw-r--r-- root/root 1244 2012-03-22 17:09 ./usr/share/doc/fsa/examples/README -rw-r--r-- root/root 1505 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta -rw-r--r-- root/root 33181 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.gui -rw-r--r-- root/root 393175 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.probs -rw-r--r-- root/root 1547 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.mfa -rw-r--r-- root/root 1546 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.mfa -rw-r--r-- root/root 1543 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.stock -rw-r--r-- root/root 1876 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.stock -rw-r--r-- root/root 715 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta -rw-r--r-- root/root 12629 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.gui -rw-r--r-- root/root 185198 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.probs -rw-r--r-- root/root 800 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.mfa -rw-r--r-- root/root 774 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.mfa -rw-r--r-- root/root 1812 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.stock -rw-r--r-- root/root 1025 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.stock -rw-r--r-- root/root 471 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta -rw-r--r-- root/root 7534 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.gui -rw-r--r-- root/root 113663 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.probs -rw-r--r-- root/root 488 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.mfa -rw-r--r-- root/root 492 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.mfa -rw-r--r-- root/root 1185 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.stock -rw-r--r-- root/root 639 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.stock -rw-r--r-- root/root 266 2012-03-22 17:09 ./usr/share/doc/fsa/pretty.css drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/man1/ -rw-r--r-- root/root 402 2020-11-15 16:45 ./usr/share/man/man1/fsa-translate.1.gz -rw-r--r-- root/root 393 2020-11-15 16:45 ./usr/share/man/man1/fsa.1.gz -rw-r--r-- root/root 467 2020-11-15 16:45 ./usr/share/man/man1/gapcleaner.1.gz -rw-r--r-- root/root 1077 2020-11-15 16:45 ./usr/share/man/man1/isect_mercator_alignment_gff.1.gz -rw-r--r-- root/root 695 2020-11-15 16:45 ./usr/share/man/man1/map_coords.1.gz -rw-r--r-- root/root 1074 2020-11-15 16:45 ./usr/share/man/man1/map_gff_coords.1.gz -rw-r--r-- root/root 378 2020-11-15 16:45 ./usr/share/man/man1/percentid.1.gz -rw-r--r-- root/root 411 2020-11-15 16:45 ./usr/share/man/man1/prot2codon.1.gz -rw-r--r-- root/root 443 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta.1.gz -rw-r--r-- root/root 533 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta_gff.1.gz -rw-r--r-- root/root 870 2020-11-15 16:45 ./usr/share/man/man1/slice_mercator_alignment.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1325 B] Get:5 copy:/<>/apt_archive ./ Packages [1404 B] Fetched 3344 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 50.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 openssl amd64 3.1.4-2 [1426 kB] Get:4 http://localhost:3142/debian sid/main amd64 ca-certificates all 20230311 [153 kB] Get:5 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:6 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:7 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1.1+b1 [565 kB] Get:8 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.44.2-1 [882 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1.1+b1 [950 kB] Get:10 http://localhost:3142/debian sid/main amd64 iso-codes all 4.15.0-1 [2906 kB] Get:11 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 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[14.0 kB] Get:44 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:45 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:46 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:49 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:51 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:54 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:55 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:56 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:57 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:59 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:61 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:62 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:63 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:64 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:71 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:72 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.084-1 [216 kB] Get:73 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:74 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:75 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.72-1 [187 kB] Get:77 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:78 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:79 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:80 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:81 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:82 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-6 [37.8 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:88 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:89 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:90 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:92 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:94 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:95 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:96 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1 [12.5 kB] Get:98 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:99 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:100 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:101 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1 [43.0 kB] Get:103 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:104 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1 [99.5 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1 [102 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:107 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1 [60.3 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1 [28.8 kB] Get:109 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:110 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:111 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:115 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:116 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:117 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:118 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:119 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-6 [63.1 kB] Get:120 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:122 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:123 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:124 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 0s (78.8 MB/s) Selecting previously unselected package netbase. (Reading database ... 22599 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.1.4-2_amd64.deb ... Unpacking openssl (3.1.4-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../004-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.40-1.1+b1_amd64.deb ... Unpacking gpgconf (2.2.40-1.1+b1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libio-socket-ssl-perl (2.084-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.60-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 164924 Build-Time: 123 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 12 Job: fsa_1.15.9+dfsg-6 Lintian: pass Machine Architecture: amd64 Package: fsa Package-Time: 147 Source-Version: 1.15.9+dfsg-6 Space: 164924 Status: successful Version: 1.15.9+dfsg-6 -------------------------------------------------------------------------------- Finished at 2024-01-09T14:00:03Z Build needed 00:02:27, 164924k disk space