sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | fsa 1.15.9+dfsg-6 (i386) Mon, 29 Jul 2024 04:43:04 +0000 | +==============================================================================+ Package: fsa Version: 1.15.9+dfsg-6 Source Version: 1.15.9+dfsg-6 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.KK1dZ17p2Q... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-rXtOxS/resolver-xXb0rJ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.7 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9811 kB] Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [9717 kB] Fetched 30.5 MB in 8s (4023 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgcrypt20 linux-libc-dev 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3096 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-5 [741 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev all 6.9.12-1 [2355 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3096 kB in 0s (47.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11970 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.11.0-5_arm64.deb ... Unpacking libgcrypt20:arm64 (1.11.0-5) over (1.11.0-2) ... Setting up libgcrypt20:arm64 (1.11.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11970 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.9.12-1_all.deb ... Unpacking linux-libc-dev (6.9.12-1) over (6.9.11-1) ... Setting up linux-libc-dev (6.9.12-1) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fsa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fsa.git Please use: git clone https://salsa.debian.org/med-team/fsa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 574 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main fsa 1.15.9+dfsg-6 (dsc) [1971 B] Get:2 http://mirror.einval.org/debian unstable/main fsa 1.15.9+dfsg-6 (tar) [559 kB] Get:3 http://mirror.einval.org/debian unstable/main fsa 1.15.9+dfsg-6 (diff) [13.4 kB] Fetched 574 kB in 0s (2230 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fsa-rXtOxS/fsa-1.15.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-rXtOxS' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [740 B] Get:5 copy:/<>/apt_archive ./ Packages [782 B] Fetched 2131 B in 0s (124 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-14-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:i386 fakeroot file g++-14-i686-linux-gnu g++-i686-linux-gnu gawk gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libblkid1:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0t64:i386 libgomp1:i386 libgomp1-i386-cross libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross liblocale-gettext-perl libmagic-mgc libmagic1t64 libmount1:i386 libpcre2-8-0:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libreadline8t64 libselinux1:i386 libsigsegv2 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db mummer:i386 po-debconf readline-common sensible-utils ucf zlib1g:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make binutils-multiarch wise:i386 gcc-14-doc gawk-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 low-memory-monitor:i386 cryptsetup-bin:i386 libstdc++-14-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl libglib2.0-data:i386 shared-mime-info:i386 xdg-user-dirs:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-14-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz exonerate:i386 fakeroot file g++-14-i686-linux-gnu g++-i686-linux-gnu gawk gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libblkid1:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0t64:i386 libgomp1:i386 libgomp1-i386-cross libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross liblocale-gettext-perl libmagic-mgc libmagic1t64 libmount1:i386 libpcre2-8-0:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libreadline8t64 libselinux1:i386 libsigsegv2 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db mummer:i386 po-debconf readline-common sbuild-build-depends-main-dummy:i386 sensible-utils ucf zlib1g:i386 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 97.9 MB of archives. After this operation, 401 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libsigsegv2 arm64 2.14-1+b1 [34.3 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 gawk arm64 1:5.2.1-2+b1 [642 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7 [14.8 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-1 [95.3 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.1-2 [1394 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu-base arm64 14.1.0-5cross1 [45.8 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 cpp-14-i686-linux-gnu arm64 14.1.0-5cross1 [10.4 MB] Get:25 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:14.1.0-2 [4788 B] Get:26 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.42.90.20240720-2 [2404 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.1.0-5cross1 [41.0 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.39-4cross1 [1361 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 14.1.0-5cross1 [88.2 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 14.1.0-5cross1 [135 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 14.1.0-5cross1 [26.8 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 14.1.0-5cross1 [7372 B] Get:34 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 14.1.0-5cross1 [2598 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 14.1.0-5cross1 [718 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 14.1.0-5cross1 [1054 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 14.1.0-5cross1 [231 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-i386-cross all 14.1.0-5cross1 [2583 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu arm64 14.1.0-5cross1 [20.0 MB] Get:40 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:14.1.0-2 [1444 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.39-4cross1 [1736 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-i386-cross all 14.1.0-5cross1 [2413 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 g++-14-i686-linux-gnu arm64 14.1.0-5cross1 [11.3 MB] Get:44 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:14.1.0-2 [1200 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg-3+b1 [609 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-4 [299 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.10 [3480 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.16 [88.6 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:67 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.16 [891 kB] Get:73 http://mirror.einval.org/debian unstable/main i386 gcc-14-base i386 14.1.0-5 [45.6 kB] Get:74 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 14.1.0-5 [88.2 kB] Get:75 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.39-6 [2650 kB] Get:76 http://mirror.einval.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get:77 http://mirror.einval.org/debian unstable/main i386 libblkid1 i386 2.40.2-1 [183 kB] Get:78 http://mirror.einval.org/debian unstable/main i386 libpcre2-8-0 i386 10.42-4+b1 [259 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 libselinux1 i386 3.5-2+b3 [78.5 kB] Get:80 http://mirror.einval.org/debian unstable/main i386 libmount1 i386 2.40.2-1 [211 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1 [83.9 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 libglib2.0-0t64 i386 2.80.4-1 [1555 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 exonerate i386 2.4.0-5+b1 [2077 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.35.1-1 [29.6 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.35.1-1 [74.0 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3 [198 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 14.1.0-5 [2607 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 14.1.0-5 [7632 B] Get:89 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.36-4 [95.7 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.36-4 [125 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.39-6 [1740 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 14.1.0-5 [138 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 14.1.0-5 [27.3 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 14.1.0-5 [765 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 14.1.0-5 [1054 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 14.1.0-5 [231 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libgcc-14-dev i386 14.1.0-5 [2581 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libstdc++-14-dev i386 14.1.0-5 [2408 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 mummer i386 3.23+dfsg-8 [669 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.9 MB in 1s (83.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 11970 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../libsigsegv2_2.14-1+b1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.14-1+b1) ... Setting up readline-common (8.2-4) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up libsigsegv2:arm64 (2.14-1+b1) ... Selecting previously unselected package gawk. (Reading database ... 12012 files and directories currently installed.) Preparing to unpack .../00-gawk_1%3a5.2.1-2+b1_arm64.deb ... Unpacking gawk (1:5.2.1-2+b1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../01-liblocale-gettext-perl_1.07-7_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. 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Setting up gcc-14-base:i386 (14.1.0-5) ... Setting up gawk (1:5.2.1-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.42.90.20240720-2) ... Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-i686-linux-gnu-base:arm64 (14.1.0-5cross1) ... Setting up gcc-14-cross-base (14.1.0-5cross1) ... Setting up file (1:5.45-3) ... Setting up libyaml-perl (1.31-1) ... Setting up libfakeroot:arm64 (1.35.1-1) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libc6-i386-cross (2.39-4cross1) ... Setting up cpp-14-i686-linux-gnu (14.1.0-5cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libquadmath0-i386-cross (14.1.0-5cross1) ... Setting up libxml2:arm64 (2.12.7+dfsg-3+b1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libatomic1-i386-cross (14.1.0-5cross1) ... Setting up libgomp1-i386-cross (14.1.0-5cross1) ... Setting up libc6-dev-i386-cross (2.39-4cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up libgcc-s1-i386-cross (14.1.0-5cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (14.1.0-5cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up cpp-i686-linux-gnu (4:14.1.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (14.1.0-5cross1) ... Setting up libstdc++6-i386-cross (14.1.0-5cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.16) ... Setting up libubsan1-i386-cross (14.1.0-5cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libgcc-14-dev-i386-cross (14.1.0-5cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up gcc-14-i686-linux-gnu (14.1.0-5cross1) ... Setting up gcc-i686-linux-gnu (4:14.1.0-2) ... Setting up libstdc++-14-dev-i386-cross (14.1.0-5cross1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up g++-14-i686-linux-gnu (14.1.0-5cross1) ... Setting up g++-i686-linux-gnu (4:14.1.0-2) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-i386 (12.10) ... Setting up libgcc-s1:i386 (14.1.0-5) ... Setting up libc6:i386 (2.39-6) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up libasan8:i386 (14.1.0-5) ... Setting up libblkid1:i386 (2.40.2-1) ... Setting up libstdc++6:i386 (14.1.0-5) ... Setting up libitm1:i386 (14.1.0-5) ... Setting up zlib1g:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up libcrypt1:i386 (1:4.4.36-4) ... Setting up libgomp1:i386 (14.1.0-5) ... Setting up libquadmath0:i386 (14.1.0-5) ... Setting up libatomic1:i386 (14.1.0-5) ... Setting up libpcre2-8-0:i386 (10.42-4+b1) ... Setting up libubsan1:i386 (14.1.0-5) ... Setting up libcrypt-dev:i386 (1:4.4.36-4) ... Setting up mummer:i386 (3.23+dfsg-8) ... Setting up libc6-dev:i386 (2.39-6) ... Setting up libgcc-14-dev:i386 (14.1.0-5) ... Setting up libstdc++-14-dev:i386 (14.1.0-5) ... Setting up libselinux1:i386 (3.5-2+b3) ... Setting up libmount1:i386 (2.40.2-1) ... Setting up libglib2.0-0t64:i386 (2.80.4-1) ... /var/lib/dpkg/info/libglib2.0-0t64:i386.postinst: 37: /usr/lib/i386-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0t64:i386.postinst: 38: /usr/lib/i386-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up exonerate:i386 (2.4.0-5+b1) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.10 g++-14_14.1.0-5 gcc-14_14.1.0-5 libc6-dev_2.39-6 libstdc++-14-dev_14.1.0-5 libstdc++-14-dev-i386-cross_14.1.0-5cross1 libstdc++6_14.1.0-5 libstdc++6-i386-cross_14.1.0-5cross1 linux-libc-dev_6.9.12-1 Package versions: apt_2.9.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.3 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-aarch64-linux-gnu_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-i686-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-14_14.1.0-5 cpp-14-aarch64-linux-gnu_14.1.0-5 cpp-14-i686-linux-gnu_14.1.0-5cross1 cpp-aarch64-linux-gnu_4:14.1.0-2 cpp-i686-linux-gnu_4:14.1.0-2 cross-config_2.6.20 crossbuild-essential-i386_12.10 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.10 dpkg-cross_2.6.20 dpkg-dev_1.22.10 dwz_0.15-1+b1 exonerate_2.4.0-5+b1 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-14_14.1.0-5 g++-14-aarch64-linux-gnu_14.1.0-5 g++-14-i686-linux-gnu_14.1.0-5cross1 g++-aarch64-linux-gnu_4:14.1.0-2 g++-i686-linux-gnu_4:14.1.0-2 gawk_1:5.2.1-2+b1 gcc_4:14.1.0-2 gcc-14_14.1.0-5 gcc-14-aarch64-linux-gnu_14.1.0-5 gcc-14-base_14.1.0-5 gcc-14-cross-base_14.1.0-5cross1 gcc-14-i686-linux-gnu_14.1.0-5cross1 gcc-14-i686-linux-gnu-base_14.1.0-5cross1 gcc-aarch64-linux-gnu_4:14.1.0-2 gcc-i686-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 help2man_1.49.3 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.6 libarchive-zip-perl_1.68-1 libasan8_14.1.0-5 libasan8-i386-cross_14.1.0-5cross1 libatomic1_14.1.0-5 libatomic1-i386-cross_14.1.0-5cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libc6-dev-i386-cross_2.39-4cross1 libc6-i386-cross_2.39-4cross1 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.1.0-5 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.10 libelf1t64_0.191-2 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.14.0-1 libfile-which-perl_1.27-2 libgcc-14-dev_14.1.0-5 libgcc-14-dev-i386-cross_14.1.0-5cross1 libgcc-s1_14.1.0-5 libgcc-s1-i386-cross_14.1.0-5cross1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libglib2.0-0t64_2.80.4-1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.1.0-5 libgomp1-i386-cross_14.1.0-5cross1 libgpg-error0_1.49-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhwasan0_14.1.0-5 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-5 libitm1-i386-cross_14.1.0-5cross1 libjansson4_2.14-2+b2 liblocale-gettext-perl_1.07-7 liblsan0_14.1.0-5 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.10-1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libquadmath0_14.1.0-5 libquadmath0-i386-cross_14.1.0-5cross1 libreadline8t64_8.2-4 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsframe1_2.42.90.20240720-2 libsigsegv2_2.14-1+b1 libsmartcols1_2.40.2-1 libssl3t64_3.2.2-1 libstdc++-14-dev_14.1.0-5 libstdc++-14-dev-i386-cross_14.1.0-5cross1 libstdc++6_14.1.0-5 libstdc++6-i386-cross_14.1.0-5cross1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-5 libubsan1_14.1.0-5 libubsan1-i386-cross_14.1.0-5cross1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 libuuid1_2.40.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-4 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 mummer_3.23+dfsg-8 ncurses-base_6.5-2 ncurses-bin_6.5-2 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 ucf_3.0043+nmu1 util-linux_2.40.2-1 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fsa Binary: fsa Architecture: any Version: 1.15.9+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://fsa.sourceforge.net/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/fsa Vcs-Git: https://salsa.debian.org/med-team/fsa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man Package-List: fsa deb science optional arch=any Checksums-Sha1: bff4c2f27d54db9891d70e2e314bafecf801cabb 558688 fsa_1.15.9+dfsg.orig.tar.xz 2116b756b7959867ce6ceb71a6d40c6acf9b459e 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Checksums-Sha256: c3a845122e08f5e3c0fb96ef5133270a386c4ac6198856fc56aa2a796c0a6377 558688 fsa_1.15.9+dfsg.orig.tar.xz 5c2cbb013a79debd8c1ca15e9cf3f9b76ad8f171e76b326a9e70823fd36cff37 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Files: 8d6b1b18195dc5262113b1d363de88bf 558688 fsa_1.15.9+dfsg.orig.tar.xz b3b6cac1bebbb24ce81be6891155f3bc 13444 fsa_1.15.9+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+xYDYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE2aA//WlYn1kr0gp4xWVFytdACx6kvqmiEdStg sHIKciMkegewKTBdInLZ58tckLKWO8r+2W8FOEujrElAc+UXbzBKNg0HySHXHhM2 thUttzpZz2yREAI5Skl70FDrKPcCT36swjJbXWZRddLd7bYTnnPBAVv6KWa/U8aw B7f2d8RP9BGxdzu5HckPSHq/U4kzy0gjS9ywP4O+LKEx5SNiTzufLxjSXMNZE/ah tuCWgy/vxTTZt6iTRyEANwV2bnznvXyLa2HT2/GWuztLXICptqaNsL/qm9G/w0AL oCC8OcO0kbMBw03TUKSr0ASM6uMPGNwFtubVHeV0tRRRiuJaVqdgtwFGnmfpA8pK 4YrkltuKRt8d4H1CogTksxWVmyb/2TPG/QRwiX9UYJaTZRRVCKL1sPBJm6AMkVmt qNOs3REsLMdEezAV0wWWEDTJJBlyNKO6pLGCLcakgkd85t+AUg7iZIa+iRtL4xxX JtYSlkILVw0xVHWr8O+c2MsOMGpOBhWJKOTs0l54IFwszyLyk1F8s/b0CcNZrA45 t0XYBYEUTuC1z+K44ECzvtOxZLdgvpznJ1pDbBHmDlixI10m4xxQx8RXKEHVl11e jqRCsuLP6u+fehNQqn6X/vhtay8TtKxlYMz5ts47y4HBBO4F0j2/JvzgHR0QPcb3 YbYYMtXghso= =Zh/E -----END PGP SIGNATURE----- gpgv: Signature made Sun Nov 15 17:07:02 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fsa_1.15.9+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting fsa in /<> dpkg-source: info: unpacking fsa_1.15.9+dfsg.orig.tar.xz dpkg-source: info: unpacking fsa_1.15.9+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-display.patch dpkg-source: info: applying removed-pdf-only-docs.patch dpkg-source: info: applying privacy_breach_logo.patch dpkg-source: info: applying fixed-check-for-m64-flag.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fsa dpkg-buildpackage: info: source version 1.15.9+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate debian/rules binary-arch dh binary-arch dh_update_autotools_config -a cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:42: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:42: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:42: the top level configure.in:47: warning: The macro `AC_HEADER_TIME' is obsolete. configure.in:47: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.in:47: the top level configure.in:60: warning: The macro `AC_LANG_CPLUSPLUS' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/c.m4:262: AC_LANG_CPLUSPLUS is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:60: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:268: warning: AC_OUTPUT should be used without arguments. configure.in:268: You should run autoupdate. dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '998' is supported by ustar format... yes checking whether GID '999' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking dependency style of i686-linux-gnu-gcc... none checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking the archiver (i686-linux-gnu-ar) interface... ar checking for i686-linux-gnu-gcc... (cached) i686-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether i686-linux-gnu-gcc accepts -g... (cached) yes checking for i686-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether i686-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of i686-linux-gnu-gcc... (cached) none checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of i686-linux-gnu-g++... none checking for gawk... (cached) gawk checking whether make sets $(MAKE)... (cached) yes checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking for unsigned long long int... yes checking for uintmax_t... yes checking for ptrdiff_t... yes checking for tr1/unordered_map... yes checking for tr1/unordered_set... yes checking for fork... yes checking for vfork... yes checking for working fork... cross configure: WARNING: result yes guessed because of cross compilation checking for working vfork... (cached) yes checking for floor... yes checking for memmove... yes checking for pow... yes checking for regcomp... yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strspn... yes checking for strstr... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking for mummer... /usr/bin/mummer checking for exonerate... /usr/bin/exonerate checking for i686-linux-gnu-g++ options needed to detect all undeclared functions... none needed checking for struct sysinfo.totalram... yes checking for struct sysinfo.mem_unit... yes checking whether sysctl is declared... no checking whether CTL_HW is declared... no checking whether HW_PHYSMEM is declared... no checking for javac... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/main/Makefile config.status: creating src/manager/Makefile config.status: creating src/fsa/Makefile config.status: creating src/annealing/Makefile config.status: creating src/math/Makefile config.status: creating src/util/Makefile config.status: creating src/seq/Makefile config.status: creating perl/Makefile config.status: creating examples/Makefile config.status: creating html/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands -- FSA 1.15.9 Configuration Results -- C++ compiler: i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG GCC version: i686-linux-gnu-gcc (Debian 14.1.0-5) 14.1.0 Host System type: i686-pc-linux-gnu Install prefix: /usr See config.h for further configuration information. Email with questions and bug reports. dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src/util make[3]: Entering directory '/<>/src/util' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dexception.o dexception.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from dexception.cc:4: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/util/sstring.h:5: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o logfile.o logfile.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/logfile.h:13, from logfile.cc:1: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/fstream:40, from ../../src/util/logfile.h:8: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o memcheck.o memcheck.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o misc.o misc.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from misc.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/ostream:40, from /usr/i686-linux-gnu/include/c++/14/iostream:41, from ../../src/util/misc.h:14: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o opts_list.o opts_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ opts_list.cc:99:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 99 | SET_VERSION_INFO(*this); | ^ In file included from opts_list.cc:2: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ opts_list.cc:99:3: note: in expansion of macro ‘SET_VERSION_INFO’ 99 | SET_VERSION_INFO(*this); | ^~~~~~~~~~~~~~~~ In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from ../../src/util/opts_list.h:10: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/ostream:40, from /usr/i686-linux-gnu/include/c++/14/iostream:41, from ../../src/util/opts_list.h:4: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o regexp.o regexp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ regexp.cc: In member function ‘char* CRegCompilerBase::regatom(int*)’: regexp.cc:995:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 995 | register char ch; | ^~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sstring.o sstring.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/sstring.h:14, from sstring.cc:5: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/util/sstring.h:5: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libutil.a i686-linux-gnu-ar cru libutil.a dexception.o logfile.o memcheck.o misc.o opts_list.o regexp.o sstring.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libutil.a make[3]: Leaving directory '/<>/src/util' Making all in src/math make[3]: Entering directory '/<>/src/math' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mathematics.o mathematics.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from mathematics.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/refwrap.h:39, from /usr/i686-linux-gnu/include/c++/14/vector:68, from ../../src/math/mathematics.h:13: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mst.o mst.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mst.h:11, from mst.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/ostream:40, from /usr/i686-linux-gnu/include/c++/14/iostream:41, from ../../src/util/misc.h:14: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libmath.a i686-linux-gnu-ar cru libmath.a mathematics.o mst.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libmath.a make[3]: Leaving directory '/<>/src/math' Making all in src/seq make[3]: Entering directory '/<>/src/seq' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alphabet.o alphabet.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/alphabet.h:20, from alphabet.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/seq/alphabet.h:15: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment.o alignment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from alignment.cc:13: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/numeric:75, from alignment.cc:8: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ alignment.cc: In member function ‘void fsa::Alignment::read_mfa(const std::string&, bool, bool)’: alignment.cc:295:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:295:31: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:1043:5: note: declared here 1043 | not1(const _Predicate& __pred) | ^~~~ alignment.cc: In member function ‘void fsa::Stockholm::read_stockholm(const std::string&, bool, bool)’: alignment.cc:732:40: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:732:26: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:1043:5: note: declared here 1043 | not1(const _Predicate& __pred) | ^~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gff.o gff.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from gff.cc:14: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/fstream:40, from gff.cc:8: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from gff.cc:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mercator.o mercator.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from ../../src/seq/mercator.h:13, from mercator.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/numeric:75, from mercator.cc:9: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence.o sequence.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from sequence.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/util/regexp.h:8, from sequence.cc:10: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from sequence.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o similarity_matrix.o similarity_matrix.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from similarity_matrix.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/ostream:40, from /usr/i686-linux-gnu/include/c++/14/iostream:41, from similarity_matrix.cc:8: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/seq/similarity_matrix.h:13, from similarity_matrix.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libseq.a i686-linux-gnu-ar cru libseq.a alphabet.o alignment.o gff.o mercator.o sequence.o similarity_matrix.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libseq.a make[3]: Leaving directory '/<>/src/seq' Making all in src/manager make[3]: Entering directory '/<>/src/manager' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o manager.o manager.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/manager/manager.h:12, from manager.cc:6: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from manager.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mw_adapter.o mw_adapter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_adapter.o db_adapter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_misc.o db_misc.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71, from db_misc.cc:7: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ rm -f libmanager.a i686-linux-gnu-ar cru libmanager.a manager.o mw_adapter.o db_adapter.o db_misc.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libmanager.a make[3]: Leaving directory '/<>/src/manager' Making all in src/fsa make[3]: Entering directory '/<>/src/fsa' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o algebras.o algebras.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from algebras.cc:27: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoacid_indel2dp.o aminoacid_indel2dp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from aminoacid_indel2dp.h:28, from aminoacid_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoacid_indel2dp.cc: In function ‘Algebra Forward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidIndel2AlignBaumWelch&, AminoAcidIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1039:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1039 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1041:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1041 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra Backward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1373:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1373 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1375:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1375 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1320:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1320 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra ForwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1622:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1622 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1624:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1624 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1568:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1568 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidIndel2AlignWithBandingBaumWelch&, AminoAcidIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1877:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1877 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1879:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1879 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:2243:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2243 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:2245:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2245 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:2189:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2189 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoaciddp.o aminoaciddp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from aminoaciddp.h:28, from aminoaciddp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoaciddp.cc: In function ‘Algebra Forward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidAlignBaumWelch&, AminoAcidAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1009:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1009 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1011:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1011 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra Backward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1283:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1283 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1285:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1285 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1230:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1230 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra ForwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1502:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1502 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1504:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1504 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1448:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1448 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidAlignWithBandingBaumWelch&, AminoAcidAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1727:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1727 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1729:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1729 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:2033:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2033 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:2035:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2035 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1979:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1979 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o anchors.o anchors.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/fsa/anchors.h:17, from anchors.cc:16: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ anchors.cc: In member function ‘fsa::Anchors fsa::Exonerate_adapter::call_exonerate(const std::string&, const std::string&, int) const’: anchors.cc:863:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 863 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store exonerate results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:864:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 864 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc: In member function ‘fsa::Anchors fsa::Mummer_adapter::call_mummer(const std::string&, const std::string&, size_t) const’: anchors.cc:1100:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1100 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store mummer results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:1101:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1101 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o constraints.o constraints.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o fsa.o fsa.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ fsa.cc:25:125: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^ In file included from ../../src/fsa/fsa.h:66, from fsa.cc:11: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ ../../src/util/opts_list.h:152:153: note: in expansion of macro ‘SET_VERSION_INFO’ 152 | #define INIT_CONSTRUCTED_OPTS_LIST(OPTS,ARGS,SYNTAX,SHORTDESC) OPTS.short_description = (SHORTDESC); OPTS.syntax = (SYNTAX); OPTS.expect_args = (ARGS); SET_VERSION_INFO(OPTS); Log_stream::add_opts(OPTS); | ^~~~~~~~~~~~~~~~ fsa.cc:25:3: note: in expansion of macro ‘INIT_CONSTRUCTED_OPTS_LIST’ 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o model.o model.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from model.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ In file included from ../../src/fsa/model.h:32: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotide_indel2dp.o nucleotide_indel2dp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from nucleotide_indel2dp.h:28, from nucleotide_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotide_indel2dp.cc: In function ‘Algebra Forward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideIndel2AlignBaumWelch&, NucleotideIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:975:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 975 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:977:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 977 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra Backward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:1277:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1277 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1279:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1279 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1256:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1256 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra ForwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1494:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1494 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1496:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1496 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1472:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1472 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideIndel2AlignWithBandingBaumWelch&, NucleotideIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1717:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1717 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1719:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1719 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:2051:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2051 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:2053:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2053 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:2029:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2029 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotidedp.o nucleotidedp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from nucleotidedp.h:28, from nucleotidedp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotidedp.cc: In function ‘Algebra Forward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideAlignBaumWelch&, NucleotideAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:945:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 945 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:947:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 947 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra Backward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:1187:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1187 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1189:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1189 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1166:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1166 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra ForwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1374:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1374 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1376:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1376 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1352:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1352 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideAlignWithBandingBaumWelch&, NucleotideAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1567:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1567 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1569:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1569 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1841:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1841 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1843:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1843 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1819:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1819 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence_pair_selector.o sequence_pair_selector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ rm -f libfsa.a i686-linux-gnu-ar cru libfsa.a algebras.o aminoacid_indel2dp.o aminoaciddp.o anchors.o constraints.o fsa.o model.o nucleotide_indel2dp.o nucleotidedp.o sequence_pair_selector.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libfsa.a make[3]: Leaving directory '/<>/src/fsa' Making all in src/annealing make[3]: Entering directory '/<>/src/annealing' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment_DAG.o alignment_DAG.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from alignment_DAG.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/refwrap.h:39, from /usr/i686-linux-gnu/include/c++/14/deque:67, from /usr/i686-linux-gnu/include/c++/14/stack:62, from ../../src/annealing/alignment_DAG.h:39: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dotplot.o dotplot.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from dotplot.h:13, from dotplot.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/ostream:40, from /usr/i686-linux-gnu/include/c++/14/iostream:41, from ../../src/util/misc.h:14: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from dotplot.h:14: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/i686-linux-gnu/include/c++/14/string:47: /usr/i686-linux-gnu/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from dotplot.h:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o tree_weights.o tree_weights.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/logfile.h:13, from tree_weights.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/fstream:40, from ../../src/util/logfile.h:8: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/annealing/tree_weights.h:18, from tree_weights.cc:9: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libannealing.a i686-linux-gnu-ar cru libannealing.a alignment_DAG.o dotplot.o tree_weights.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libannealing.a make[3]: Leaving directory '/<>/src/annealing' Making all in src/main make[3]: Entering directory '/<>/src/main' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o main.o main.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/i686-linux-gnu/include/c++/14/ext/hash_map:60, from ../../src/fsa/dptables.h:43, from ../../src/fsa/mybanding.h:25, from ../../src/fsa/model.h:24, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from main.cc:8: /usr/i686-linux-gnu/include/c++/14/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../../src/fsa/fsa.h:65: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/ostream:40, from /usr/i686-linux-gnu/include/c++/14/iostream:41, from ../../src/fsa/fsa.h:61: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/fsa/fsa.h:68: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/dotplot.h:14, from ../../src/fsa/anchors.h:16: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/i686-linux-gnu/include/c++/14/string:47: /usr/i686-linux-gnu/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/fsa/anchors.h:17: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/anchors.h:18: ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o fsa main.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gapcleaner.o gapcleaner.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from gapcleaner.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/refwrap.h:39, from /usr/i686-linux-gnu/include/c++/14/deque:67, from /usr/i686-linux-gnu/include/c++/14/stack:62, from ../../src/annealing/alignment_DAG.h:39: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o gapcleaner gapcleaner.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o isect_mercator_alignment_gff.o isect_mercator_alignment_gff.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/gff.h:17, from isect_mercator_alignment_gff.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/fstream:40, from isect_mercator_alignment_gff.cc:9: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from isect_mercator_alignment_gff.cc:13: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o isect_mercator_alignment_gff isect_mercator_alignment_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_coords.o map_coords.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from map_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/stl_tree.h:65, from /usr/i686-linux-gnu/include/c++/14/set:62, from ../../src/seq/alignment.h:13: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_coords map_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_gff_coords.o map_gff_coords.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/gff.h:17, from map_gff_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/seq/gff.h:12: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from map_gff_coords.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_gff_coords map_gff_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o percentid.o percentid.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from percentid.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o percentid percentid.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o prot2codon.o prot2codon.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from prot2codon.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o prot2codon prot2codon.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta.o slice_fasta.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from slice_fasta.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta slice_fasta.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta_gff.o slice_fasta_gff.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/gff.h:17, from slice_fasta_gff.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/seq/gff.h:12: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from slice_fasta_gff.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta_gff slice_fasta_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_mercator_alignment.o slice_mercator_alignment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from slice_mercator_alignment.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/fstream:40, from slice_mercator_alignment.cc:9: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_mercator_alignment slice_mercator_alignment.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o translate.o translate.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from translate.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wall -Wno-tautological-compare -march=i686 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o translate translate.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a make[3]: Leaving directory '/<>/src/main' Making all in perl make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/perl' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' Making all in html make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/html' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/fsa/ -a make -j1 install DESTDIR=/<>/fsa-1.15.9\+dfsg/debian/fsa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src/util make[2]: Entering directory '/<>/src/util' make[3]: Entering directory '/<>/src/util' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/util' make[2]: Leaving directory '/<>/src/util' Making install in src/math make[2]: Entering directory '/<>/src/math' make[3]: Entering directory '/<>/src/math' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/math' make[2]: Leaving directory '/<>/src/math' Making install in src/seq make[2]: Entering directory '/<>/src/seq' make[3]: Entering directory '/<>/src/seq' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/seq' make[2]: Leaving directory '/<>/src/seq' Making install in src/manager make[2]: Entering directory '/<>/src/manager' make[3]: Entering directory '/<>/src/manager' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/manager' make[2]: Leaving directory '/<>/src/manager' Making install in src/fsa make[2]: Entering directory '/<>/src/fsa' make[3]: Entering directory '/<>/src/fsa' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/fsa' make[2]: Leaving directory '/<>/src/fsa' Making install in src/annealing make[2]: Entering directory '/<>/src/annealing' make[3]: Entering directory '/<>/src/annealing' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/annealing' make[2]: Leaving directory '/<>/src/annealing' Making install in src/main make[2]: Entering directory '/<>/src/main' make[3]: Entering directory '/<>/src/main' /usr/bin/mkdir -p '/<>/debian/fsa/usr/bin' /usr/bin/install -c fsa gapcleaner isect_mercator_alignment_gff map_coords map_gff_coords percentid prot2codon slice_fasta slice_fasta_gff slice_mercator_alignment translate '/<>/debian/fsa/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/main' make[2]: Leaving directory '/<>/src/main' Making install in perl make[2]: Entering directory '/<>/perl' make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/perl' make[2]: Leaving directory '/<>/perl' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' Making install in html make[2]: Entering directory '/<>/html' make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/html' make[2]: Leaving directory '/<>/html' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mv /<>/debian/fsa/usr/bin/translate /<>/debian/fsa/usr/bin/fsa-translate make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'fsa' in '../fsa_1.15.9+dfsg-6_i386.deb'. dpkg-deb: building package 'fsa-dbgsym' in '../fsa-dbgsym_1.15.9+dfsg-6_i386.deb'. # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate dpkg-genbuildinfo --build=any -O../fsa_1.15.9+dfsg-6_i386.buildinfo dpkg-genchanges --build=any -O../fsa_1.15.9+dfsg-6_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-07-29T04:54:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fsa_1.15.9+dfsg-6_i386.changes: ------------------------------- Format: 1.8 Date: Sun, 15 Nov 2020 17:45:20 +0100 Source: fsa Binary: fsa fsa-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 1.15.9+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fsa - Fast Statistical Alignment of protein, RNA or DNA sequences Changes: fsa (1.15.9+dfsg-6) unstable; urgency=medium . * Fix typo Checksums-Sha1: da70eb419e2eed0a80fc9f105390432168648577 16045544 fsa-dbgsym_1.15.9+dfsg-6_i386.deb faa52049586ee95180c397e905d6223ff4036ad1 5108 fsa_1.15.9+dfsg-6_i386.buildinfo 9bdb85cb9db8083c3ba2329451aa7cc426e0903e 741784 fsa_1.15.9+dfsg-6_i386.deb Checksums-Sha256: b76e2493eecfcdbadb3371e46e11e2e2f525796e2d02a2d8ce9317fe459db5da 16045544 fsa-dbgsym_1.15.9+dfsg-6_i386.deb c9ca0d2bf9d6658614077babd7cb40d19d2860113216b606dfbe6147e08f7aa4 5108 fsa_1.15.9+dfsg-6_i386.buildinfo cf67c7663f5d32bc735e6e6436965e2a46237cd9baa3c3c82d645493829badc2 741784 fsa_1.15.9+dfsg-6_i386.deb Files: 27745710f43b6982f545400238044525 16045544 debug optional fsa-dbgsym_1.15.9+dfsg-6_i386.deb 2061d9980f3d67361b28a4e5de601f34 5108 science optional fsa_1.15.9+dfsg-6_i386.buildinfo 0b36709b6c834c96559fe997bb47a616 741784 science optional fsa_1.15.9+dfsg-6_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fsa Binary: fsa fsa-dbgsym Architecture: i386 Version: 1.15.9+dfsg-6 Checksums-Md5: 27745710f43b6982f545400238044525 16045544 fsa-dbgsym_1.15.9+dfsg-6_i386.deb 0b36709b6c834c96559fe997bb47a616 741784 fsa_1.15.9+dfsg-6_i386.deb Checksums-Sha1: da70eb419e2eed0a80fc9f105390432168648577 16045544 fsa-dbgsym_1.15.9+dfsg-6_i386.deb 9bdb85cb9db8083c3ba2329451aa7cc426e0903e 741784 fsa_1.15.9+dfsg-6_i386.deb Checksums-Sha256: b76e2493eecfcdbadb3371e46e11e2e2f525796e2d02a2d8ce9317fe459db5da 16045544 fsa-dbgsym_1.15.9+dfsg-6_i386.deb cf67c7663f5d32bc735e6e6436965e2a46237cd9baa3c3c82d645493829badc2 741784 fsa_1.15.9+dfsg-6_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Mon, 29 Jul 2024 04:54:11 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.3), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-aarch64-linux-gnu (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-1), bsdutils (= 1:2.40.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-14 (= 14.1.0-5), cpp-14-aarch64-linux-gnu (= 14.1.0-5), cpp-aarch64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.10), dpkg-dev (= 1.22.10), dwz (= 0.15-1+b1), exonerate (= 2.4.0-5+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.1.0-5), g++-14-aarch64-linux-gnu (= 14.1.0-5), g++-aarch64-linux-gnu (= 4:14.1.0-2), gawk (= 1:5.2.1-2+b1), gcc (= 4:14.1.0-2), gcc-14 (= 14.1.0-5), gcc-14-aarch64-linux-gnu (= 14.1.0-5), gcc-14-base (= 14.1.0-5), gcc-aarch64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), help2man (= 1.49.3), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-5), libatomic1 (= 14.1.0-5), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-5), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.10), libelf1t64 (= 0.191-2), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.1.0-5), libgcc-s1 (= 14.1.0-5), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libglib2.0-0t64 (= 2.80.4-1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-5), libgprofng0 (= 2.42.90.20240720-2), libhwasan0 (= 14.1.0-5), libicu72 (= 72.1-5), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-5), libjansson4 (= 2.14-2+b2), liblocale-gettext-perl (= 1.07-7), liblsan0 (= 14.1.0-5), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.7-2), libreadline8t64 (= 8.2-4), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsigsegv2 (= 2.14-1+b1), libsmartcols1 (= 2.40.2-1), libssl3t64 (= 3.2.2-1), libstdc++-14-dev (= 14.1.0-5), libstdc++6 (= 14.1.0-5), libsystemd0 (= 256.4-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-5), libubsan1 (= 14.1.0-5), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), mummer (= 3.23+dfsg-8), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), po-debconf (= 1.0.21+nmu1), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), util-linux (= 2.40.2-1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1605458720" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fsa-dbgsym_1.15.9+dfsg-6_i386.deb --------------------------------- new Debian package, version 2.0. size 16045544 bytes: control archive=1092 bytes. 777 bytes, 12 lines control 1244 bytes, 12 lines md5sums Package: fsa-dbgsym Source: fsa Version: 1.15.9+dfsg-6 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 16430 Depends: fsa (= 1.15.9+dfsg-6) Section: debug Priority: optional Description: debug symbols for fsa Build-Ids: 3e7e1b296ad18e1169d6dcb6949545ef94142e25 47a47964088331dff38a76e9a20652af0a311f2c 4af9bc534db61ebe98a8b61da11ce162ad862db6 ad44548d2013ded3550a72ebba71e366caa80e37 c4dfea181226501a921db300a2b43c5ac4ac9b32 d41685688791008ad25d768b756a4bdda7816391 d9f839d42f4db9b2e80b940ff2ebf8cea9d5421f da409d275fd78ce95204e3dd65b632c080dacb2e dba393ce5303a38a804e465b900d39643172a3db ee3127a5534d6afdaadb4e51582b6e251712ad9d f0a7b8437c36dd3d68553dd0c726726bdaab833c drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/3e/ -rw-r--r-- root/root 688548 2020-11-15 16:45 ./usr/lib/debug/.build-id/3e/7e1b296ad18e1169d6dcb6949545ef94142e25.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/47/ -rw-r--r-- root/root 1757116 2020-11-15 16:45 ./usr/lib/debug/.build-id/47/a47964088331dff38a76e9a20652af0a311f2c.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/4a/ -rw-r--r-- root/root 1417664 2020-11-15 16:45 ./usr/lib/debug/.build-id/4a/f9bc534db61ebe98a8b61da11ce162ad862db6.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ad/ -rw-r--r-- root/root 1379144 2020-11-15 16:45 ./usr/lib/debug/.build-id/ad/44548d2013ded3550a72ebba71e366caa80e37.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/c4/ -rw-r--r-- root/root 677380 2020-11-15 16:45 ./usr/lib/debug/.build-id/c4/dfea181226501a921db300a2b43c5ac4ac9b32.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/d4/ -rw-r--r-- root/root 681664 2020-11-15 16:45 ./usr/lib/debug/.build-id/d4/1685688791008ad25d768b756a4bdda7816391.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/d9/ -rw-r--r-- root/root 705544 2020-11-15 16:45 ./usr/lib/debug/.build-id/d9/f839d42f4db9b2e80b940ff2ebf8cea9d5421f.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/da/ -rw-r--r-- root/root 1394512 2020-11-15 16:45 ./usr/lib/debug/.build-id/da/409d275fd78ce95204e3dd65b632c080dacb2e.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/db/ -rw-r--r-- root/root 943240 2020-11-15 16:45 ./usr/lib/debug/.build-id/db/a393ce5303a38a804e465b900d39643172a3db.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ee/ -rw-r--r-- root/root 1406624 2020-11-15 16:45 ./usr/lib/debug/.build-id/ee/3127a5534d6afdaadb4e51582b6e251712ad9d.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/f0/ -rw-r--r-- root/root 4772748 2020-11-15 16:45 ./usr/lib/debug/.build-id/f0/a7b8437c36dd3d68553dd0c726726bdaab833c.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 972768 2020-11-15 16:45 ./usr/lib/debug/.dwz/i386-linux-gnu/fsa.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa-dbgsym -> fsa fsa_1.15.9+dfsg-6_i386.deb -------------------------- new Debian package, version 2.0. size 741784 bytes: control archive=2716 bytes. 2335 bytes, 40 lines control 3513 bytes, 49 lines md5sums Package: fsa Version: 1.15.9+dfsg-6 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 4716 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), mummer, exonerate Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: http://fsa.sourceforge.net/ Description: Fast Statistical Alignment of protein, RNA or DNA sequences FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using only pairwise estimations of homology. This is made possible by the sequence annealing technique for constructing a multiple alignment from pairwise comparisons, developed by Ariel Schwartz. . FSA brings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such as aligning thousands of sequences or megabase-long sequences. FSA introduces several novel methods for constructing better alignments: * FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of input sequences. This "query-specific learning" alignment method makes FSA very robust: it can produce superior alignments of sets of homologous sequences which are subject to very different evolutionary constraints. * FSA is capable of aligning hundreds or even thousands of sequences using a randomized inference algorithm to reduce the computational cost of multiple alignment. This randomized inference can be over ten times faster than a direct approach with little loss of accuracy. * FSA can quickly align very long sequences using the "anchor annealing" technique for resolving anchors and projecting them with transitive anchoring. It then stitches together the alignment between the anchors using the methods described above. * The included GUI, MAD (Multiple Alignment Display), can display the intermediate alignments produced by FSA, where each character is colored according to the probability that it is correctly aligned drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/bin/ -rwxr-xr-x root/root 1316716 2020-11-15 16:45 ./usr/bin/fsa -rwxr-xr-x root/root 178092 2020-11-15 16:45 ./usr/bin/fsa-translate -rwxr-xr-x root/root 436140 2020-11-15 16:45 ./usr/bin/gapcleaner -rwxr-xr-x root/root 321580 2020-11-15 16:45 ./usr/bin/isect_mercator_alignment_gff -rwxr-xr-x root/root 321548 2020-11-15 16:45 ./usr/bin/map_coords -rwxr-xr-x root/root 321580 2020-11-15 16:45 ./usr/bin/map_gff_coords -rwxr-xr-x root/root 178092 2020-11-15 16:45 ./usr/bin/percentid -rwxr-xr-x root/root 178092 2020-11-15 16:45 ./usr/bin/prot2codon -rwxr-xr-x root/root 178092 2020-11-15 16:45 ./usr/bin/slice_fasta -rwxr-xr-x root/root 231372 2020-11-15 16:45 ./usr/bin/slice_fasta_gff -rwxr-xr-x root/root 321580 2020-11-15 16:45 ./usr/bin/slice_mercator_alignment drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/translate -> ../../../bin/fsa-translate drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/translate.1.gz -> ../../../../../share/man/man1/fsa-translate.1.gz drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/ -rw-r--r-- root/root 24437 2020-11-15 16:45 ./usr/share/doc/fsa/FAQ.html -rw-r--r-- root/root 5889 2014-05-16 17:25 ./usr/share/doc/fsa/README.gz -rw-r--r-- root/root 623 2020-11-15 16:45 ./usr/share/doc/fsa/changelog.Debian.gz -rw-r--r-- root/root 3603 2020-11-15 16:45 ./usr/share/doc/fsa/copyright drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/examples/ -rw-r--r-- root/root 1244 2012-03-22 17:09 ./usr/share/doc/fsa/examples/README -rw-r--r-- root/root 1505 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta -rw-r--r-- root/root 33181 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.gui -rw-r--r-- root/root 393175 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.probs -rw-r--r-- root/root 1547 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.mfa -rw-r--r-- root/root 1546 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.mfa -rw-r--r-- root/root 1543 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.stock -rw-r--r-- root/root 1876 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.stock -rw-r--r-- root/root 715 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta -rw-r--r-- root/root 12629 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.gui -rw-r--r-- root/root 185198 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.probs -rw-r--r-- root/root 800 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.mfa -rw-r--r-- root/root 774 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.mfa -rw-r--r-- root/root 1812 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.stock -rw-r--r-- root/root 1025 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.stock -rw-r--r-- root/root 471 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta -rw-r--r-- root/root 7534 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.gui -rw-r--r-- root/root 113663 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.probs -rw-r--r-- root/root 488 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.mfa -rw-r--r-- root/root 492 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.mfa -rw-r--r-- root/root 1185 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.stock -rw-r--r-- root/root 639 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.stock -rw-r--r-- root/root 266 2012-03-22 17:09 ./usr/share/doc/fsa/pretty.css drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/man1/ -rw-r--r-- root/root 402 2020-11-15 16:45 ./usr/share/man/man1/fsa-translate.1.gz -rw-r--r-- root/root 393 2020-11-15 16:45 ./usr/share/man/man1/fsa.1.gz -rw-r--r-- root/root 467 2020-11-15 16:45 ./usr/share/man/man1/gapcleaner.1.gz -rw-r--r-- root/root 1077 2020-11-15 16:45 ./usr/share/man/man1/isect_mercator_alignment_gff.1.gz -rw-r--r-- root/root 695 2020-11-15 16:45 ./usr/share/man/man1/map_coords.1.gz -rw-r--r-- root/root 1074 2020-11-15 16:45 ./usr/share/man/man1/map_gff_coords.1.gz -rw-r--r-- root/root 378 2020-11-15 16:45 ./usr/share/man/man1/percentid.1.gz -rw-r--r-- root/root 411 2020-11-15 16:45 ./usr/share/man/man1/prot2codon.1.gz -rw-r--r-- root/root 443 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta.1.gz -rw-r--r-- root/root 533 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta_gff.1.gz -rw-r--r-- root/root 870 2020-11-15 16:45 ./usr/share/man/man1/slice_mercator_alignment.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1322 B] Get:5 copy:/<>/apt_archive ./ Packages [1399 B] Fetched 3336 B in 0s (188 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 52.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.2.2-1 [1327 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1 [31.6 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1+b1 [48.0 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.43-8 [112 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.0-1 [843 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.43-8 [477 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.16.0-1 [2936 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b5 [63.8 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b1 [10.6 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1 [16.0 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b3 [22.3 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:21 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1 [43.5 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b3 [120 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.28-1 [98.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.82-1 [96.9 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.66-1 [217 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b3 [35.2 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1+b2 [13.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3 [23.4 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:40 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.38-1 [127 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b3 [31.2 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b3 [97.6 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.84-1 [23.7 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b3 [28.3 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.088-1 [222 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15~pre1-1 [37.7 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3 [48.9 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:99 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b5 [141 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b2 [11.2 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b2 [12.3 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b3 [17.4 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b2 [11.4 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b2 [41.6 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b2 [95.4 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b2 [97.6 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:112 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.44-1 [62.7 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-2 [26.6 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b3 [24.4 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b3 [8680 B] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b2 [13.1 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2 [171 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b3 [72.2 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b2 [19.9 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.89+ds-1+b1 [33.2 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-2 [58.9 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.117.1 [1053 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 0s (43.7 MB/s) Selecting previously unselected package netbase. (Reading database ... 17783 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.2.2-1_arm64.deb ... Unpacking openssl (3.2.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.66-1_arm64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../004-libassuan0_2.5.6-1+b1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1+b1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.43-8_arm64.deb ... Unpacking gpgconf (2.2.43-8) ... Selecting previously unselected package libsqlite3-0:arm64. 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Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../028-libclass-inspector-perl_1.36-3_all.deb ... Unpacking libclass-inspector-perl (1.36-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../029-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../030-libclass-xsaccessor-perl_1.19-4+b3_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b3) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../031-libclone-perl_0.46-1+b2_arm64.deb ... Unpacking libclone-perl:arm64 (0.46-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../032-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-util-perl. 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Unpacking libcpanel-json-xs-perl:arm64 (4.38-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../039-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../040-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../041-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../042-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../043-libdata-dpath-perl_0.59-1_all.deb ... Unpacking libdata-dpath-perl (0.59-1) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../044-libdata-messagepack-perl_1.02-1+b3_arm64.deb ... Unpacking libdata-messagepack-perl (1.02-1+b3) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../045-libnet-domain-tld-perl_1.75-3_all.deb ... Unpacking libnet-domain-tld-perl (1.75-3) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../046-libdata-validate-domain-perl_0.10-1.1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1.1) ... Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../047-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../048-libnet-netmask-perl_2.0002-2_all.deb ... Unpacking libnet-netmask-perl (2.0002-2) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../049-libnetaddr-ip-perl_4.079+dfsg-2+b3_arm64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../050-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../051-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../052-libdevel-size-perl_0.84-1_arm64.deb ... Unpacking libdevel-size-perl (0.84-1) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../053-libemail-address-xs-perl_1.05-1+b3_arm64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b3) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../054-libencode-locale-perl_1.05-3_all.deb ... 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Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../099-libsub-identify-perl_0.14-3+b2_arm64.deb ... Unpacking libsub-identify-perl (0.14-3+b2) ... Selecting previously unselected package libsub-name-perl:arm64. Preparing to unpack .../100-libsub-name-perl_0.27-1+b2_arm64.deb ... Unpacking libsub-name-perl:arm64 (0.27-1+b2) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../101-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../102-libpath-tiny-perl_0.146-1_all.deb ... Unpacking libpath-tiny-perl (0.146-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../103-libperlio-gzip-perl_0.20-1+b3_arm64.deb ... Unpacking libperlio-gzip-perl (0.20-1+b3) ... Selecting previously unselected package libperlio-utf8-strict-perl. 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Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:arm64 (4.38-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.46.0-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-3) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.6-1+b1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.27-1+b2) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b2) ... Setting up libpath-tiny-perl (0.146-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.43-8) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.2.2-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:arm64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.43-8) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:arm64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.44-1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libhtml-parser-perl:arm64 (3.82-1) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.1) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 174292 Build-Time: 583 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 48 Job: fsa_1.15.9+dfsg-6 Lintian: pass Machine Architecture: arm64 Package: fsa Package-Time: 669 Source-Version: 1.15.9+dfsg-6 Space: 174292 Status: successful Version: 1.15.9+dfsg-6 -------------------------------------------------------------------------------- Finished at 2024-07-29T04:54:13Z Build needed 00:11:09, 174292k disk space