sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | fsa 1.15.9+dfsg-6 (riscv64) Fri, 29 Nov 2024 19:52:53 +0000 | +==============================================================================+ Package: fsa Version: 1.15.9+dfsg-6 Source Version: 1.15.9+dfsg-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: riscv64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-68903ee3-f10e-4c7d-8935-c0e09ac9bf59' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-MzCh6F/resolver-fqOU4c' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [202 kB] Get:2 http://localhost:3142/debian unstable/non-free-firmware Sources [6820 B] Get:3 http://localhost:3142/debian unstable/main Sources [10.9 MB] Get:4 http://localhost:3142/debian unstable/contrib Sources [62.4 kB] Get:5 http://localhost:3142/debian unstable/non-free Sources [83.2 kB] Get:6 http://localhost:3142/debian unstable/main riscv64 Packages [9669 kB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages [10.0 MB] Fetched 31.0 MB in 3s (11.6 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils coreutils cpp-14 cpp-14-x86-64-linux-gnu debianutils e2fsprogs g++-14 g++-14-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu gpgv libacl1 libapt-pkg6.0t64 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdebconfclient0 libext2fs2t64 libgcc-14-dev libgcc-s1 libgmp10 libgnutls30t64 libgomp1 libgprofng0 libhogweed6t64 libhwasan0 libidn2-0 libitm1 libjansson4 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libnettle8t64 libp11-kit0 libpam-modules libpam-modules-bin libpam0g libpcre2-8-0 libperl5.40 libquadmath0 libseccomp2 libselinux1 libsemanage2 libsframe1 libsmartcols1 libss2 libssl3t64 libstdc++-14-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan2 libubsan1 libudev1 libunistring5 libuuid1 libxxhash0 libzstd1 linux-libc-dev login login.defs logsave mount ncurses-bin openssl-provider-legacy passwd perl perl-base perl-modules-5.40 sysvinit-utils util-linux xz-utils zlib1g 99 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After this operation, 77.8 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.40-4 [1954 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libc-dev-bin amd64 2.40-4 [52.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 linux-libc-dev all 6.11.10-1 [2461 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 14.2.0-8 [42.8 kB] Get:5 http://localhost:3142/debian unstable/main amd64 gcc-14-base amd64 14.2.0-8 [47.2 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-8 [72.7 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 14.2.0-8 [137 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 14.2.0-8 [25.9 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 14.2.0-8 [9280 B] Get:10 http://localhost:3142/debian unstable/main amd64 libasan8 amd64 14.2.0-8 [2729 kB] Get:11 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 14.2.0-8 [1205 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libtsan2 amd64 14.2.0-8 [2461 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 14.2.0-8 [1075 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libhwasan0 amd64 14.2.0-8 [1489 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 14.2.0-8 [145 kB] Get:16 http://localhost:3142/debian unstable/main amd64 gcc-14 amd64 14.2.0-8 [530 kB] Get:17 http://localhost:3142/debian unstable/main amd64 g++-14 amd64 14.2.0-8 [20.2 kB] Get:18 http://localhost:3142/debian unstable/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8 [12.1 MB] Get:19 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-8 [2369 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-8 [2674 kB] Get:21 http://localhost:3142/debian unstable/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8 [21.4 MB] Get:22 http://localhost:3142/debian unstable/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8 [11.1 MB] Get:23 http://localhost:3142/debian unstable/main amd64 cpp-14 amd64 14.2.0-8 [1276 B] Get:24 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 14.2.0-8 [714 kB] Get:25 http://localhost:3142/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libgprofng0 amd64 2.43.50.20241126-3 [807 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libctf0 amd64 2.43.50.20241126-3 [88.4 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libctf-nobfd0 amd64 2.43.50.20241126-3 [155 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libsframe1 amd64 2.43.50.20241126-3 [77.3 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libzstd1 amd64 1.5.6+dfsg-1+b1 [300 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libbinutils 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amd64 libseccomp2 amd64 2.5.5-2 [47.8 kB] Get:76 http://localhost:3142/debian unstable/main amd64 apt amd64 2.9.16 [1397 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libc-bin amd64 2.40-4 [626 kB] Get:78 http://localhost:3142/debian unstable/main amd64 sysvinit-utils amd64 3.11-1 [33.1 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libcap-ng0 amd64 0.8.5-4 [17.3 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libaudit1 amd64 1:4.0.2-2 [54.9 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libpam0g amd64 1.5.3-7+b1 [68.3 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libpam-modules-bin amd64 1.5.3-7+b1 [54.1 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libpam-modules amd64 1.5.3-7+b1 [267 kB] Get:85 http://localhost:3142/debian unstable/main amd64 logsave amd64 1.47.2~rc1-1 [23.5 kB] Get:86 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13019 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.2-2_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.2-2) over (1:4.0.1-1) ... Setting up libaudit1:amd64 (1:4.0.2-2) ... (Reading database ... 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Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.2~rc1-1) over (1.47.1-1) ... Setting up libext2fs2t64:amd64 (1.47.2~rc1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13022 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.2~rc1-1_amd64.deb ... Unpacking e2fsprogs (1.47.2~rc1-1) over (1.47.1-1) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.40.2-11_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.2-11) over (1:4.16.0-2+really2.40.2-9) ... Preparing to unpack .../libacl1_2.3.2-2+b1_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2+b1) over (2.3.2-2) ... Setting up libacl1:amd64 (2.3.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13023 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2+b1) over (1.1.0-2) ... Setting up libmd0:amd64 (1.1.0-2+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13025 files and directories currently installed.) Preparing to unpack .../0-login.defs_1%3a4.16.0-5_all.deb ... Unpacking login.defs (1:4.16.0-5) over (1:4.16.0-4) ... Preparing to unpack .../1-libsemanage2_3.7-2+b1_amd64.deb ... Unpacking libsemanage2:amd64 (3.7-2+b1) over (3.7-2) ... Preparing to unpack .../2-passwd_1%3a4.16.0-5_amd64.deb ... Unpacking passwd (1:4.16.0-5) over (1:4.16.0-4) ... Preparing to unpack .../3-xz-utils_5.6.3-1+b1_amd64.deb ... Unpacking xz-utils (5.6.3-1+b1) over (5.6.2-2) ... Preparing to unpack .../4-libcom-err2_1.47.2~rc1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-1) over (1.47.1-1) ... Preparing to unpack .../5-libss2_1.47.2~rc1-1_amd64.deb ... Unpacking libss2:amd64 (1.47.2~rc1-1) over (1.47.1-1) ... Setting up login.defs (1:4.16.0-5) ... Installing new version of config file /etc/login.defs ... Setting up binutils-common:amd64 (2.43.50.20241126-3) ... Setting up linux-libc-dev (6.11.10-1) ... Setting up libctf-nobfd0:amd64 (2.43.50.20241126-3) ... Setting up libcom-err2:amd64 (1.47.2~rc1-1) ... Setting up libgomp1:amd64 (14.2.0-8) ... Setting up libsframe1:amd64 (2.43.50.20241126-3) ... Setting up libjansson4:amd64 (2.14-2+b3) ... Setting up libmpfr6:amd64 (4.2.1-1+b2) ... Setting up xz-utils (5.6.3-1+b1) ... Setting up libquadmath0:amd64 (14.2.0-8) ... Setting up libmpc3:amd64 (1.3.1-1+b3) ... Setting up libatomic1:amd64 (14.2.0-8) ... Setting up libss2:amd64 (1.47.2~rc1-1) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-8) ... Setting up logsave (1.47.2~rc1-1) ... Setting up cpp-14 (14.2.0-8) ... Setting up libubsan1:amd64 (14.2.0-8) ... Setting up mount (2.40.2-11) ... Setting up perl-modules-5.40 (5.40.0-8) ... Setting up libhwasan0:amd64 (14.2.0-8) ... Setting up libasan8:amd64 (14.2.0-8) ... Setting up libsemanage2:amd64 (3.7-2+b1) ... Setting up libtsan2:amd64 (14.2.0-8) ... Setting up libbinutils:amd64 (2.43.50.20241126-3) ... Setting up libc-dev-bin (2.40-4) ... Setting up libcc1-0:amd64 (14.2.0-8) ... Setting up liblsan0:amd64 (14.2.0-8) ... Setting up libitm1:amd64 (14.2.0-8) ... Setting up login (1:4.16.0-2+really2.40.2-11) ... Setting up libctf0:amd64 (2.43.50.20241126-3) ... Setting up e2fsprogs (1.47.2~rc1-1) ... Setting up libperl5.40:amd64 (5.40.0-8) ... Setting up perl (5.40.0-8) ... Setting up libgprofng0:amd64 (2.43.50.20241126-3) ... Setting up passwd (1:4.16.0-5) ... Setting up libc6-dev:amd64 (2.40-4) ... Setting up libgcc-14-dev:amd64 (14.2.0-8) ... Setting up libstdc++-14-dev:amd64 (14.2.0-8) ... Setting up binutils-x86-64-linux-gnu (2.43.50.20241126-3) ... Setting up binutils (2.43.50.20241126-3) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-8) ... Setting up gcc-14 (14.2.0-8) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-8) ... Setting up g++-14 (14.2.0-8) ... Processing triggers for debianutils (5.21) ... Processing triggers for libc-bin (2.40-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'fsa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fsa.git Please use: git clone https://salsa.debian.org/med-team/fsa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 574 kB of source archives. Get:1 http://localhost:3142/debian unstable/main fsa 1.15.9+dfsg-6 (dsc) [1971 B] Get:2 http://localhost:3142/debian unstable/main fsa 1.15.9+dfsg-6 (tar) [559 kB] Get:3 http://localhost:3142/debian unstable/main fsa 1.15.9+dfsg-6 (diff) [13.4 kB] Fetched 574 kB in 1s (477 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/fsa-MzCh6F/fsa-1.15.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fsa-MzCh6F' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 Filtered Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [749 B] Get:5 copy:/<>/apt_archive ./ Packages [794 B] Fetched 2152 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz exonerate:riscv64 fakeroot file g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu gawk gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libblkid1:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcrypt-dev:riscv64 libcrypt1:riscv64 libdebhelper-perl libelf1t64 libfakeroot libffi8:riscv64 libfile-stripnondeterminism-perl libgcc-14-dev:riscv64 libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libglib2.0-0t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libicu72 libitm1:riscv64 libitm1-riscv64-cross liblocale-gettext-perl liblsan0:riscv64 liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libmount1:riscv64 libpcre2-8-0:riscv64 libpipeline1 libreadline8t64 libselinux1:riscv64 libsigsegv2 libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libxml2 linux-libc-dev-riscv64-cross m4 man-db mummer:riscv64 po-debconf readline-common sensible-utils zlib1g:riscv64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make wise:riscv64 gcc-14-doc gawk-doc manpages-dev flex bison gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64 libnss-nisplus:riscv64 manpages-dev:riscv64 low-memory-monitor:riscv64 cryptsetup-bin:riscv64 libstdc++-14-doc:riscv64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:riscv64 libarchive-cpio-perl libglib2.0-data:riscv64 shared-mime-info:riscv64 xdg-user-dirs:riscv64 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz exonerate:riscv64 fakeroot file g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu gawk gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libblkid1:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcrypt-dev:riscv64 libcrypt1:riscv64 libdebhelper-perl libelf1t64 libfakeroot libffi8:riscv64 libfile-stripnondeterminism-perl libgcc-14-dev:riscv64 libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libglib2.0-0t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libicu72 libitm1:riscv64 libitm1-riscv64-cross liblocale-gettext-perl liblsan0:riscv64 liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libmount1:riscv64 libpcre2-8-0:riscv64 libpipeline1 libreadline8t64 libselinux1:riscv64 libsigsegv2 libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libxml2 linux-libc-dev-riscv64-cross m4 man-db mummer:riscv64 po-debconf readline-common sbuild-build-depends-main-dummy:riscv64 sensible-utils zlib1g:riscv64 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 129 MB of archives. After this operation, 671 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libsigsegv2 amd64 2.14-1+b2 [34.4 kB] Get:5 http://localhost:3142/debian unstable/main amd64 gawk amd64 1:5.2.1-2+b1 [674 kB] Get:6 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:7 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get:10 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get:11 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:13 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:14 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:16 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:17 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:18 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:19 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://localhost:3142/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:22 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.43.50.20241126-3 [1410 kB] Get:23 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu-base amd64 14.2.0-6cross1 [47.0 kB] Get:24 http://localhost:3142/debian unstable/main amd64 cpp-14-riscv64-linux-gnu amd64 14.2.0-6cross1 [13.3 MB] Get:25 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:14.2.0-1 [4848 B] Get:26 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.40-3cross1 [1141 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 14.2.0-6cross1 [56.7 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 14.2.0-6cross1 [129 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 14.2.0-6cross1 [25.2 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 14.2.0-6cross1 [8304 B] Get:32 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 14.2.0-6cross1 [2356 kB] Get:33 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 14.2.0-6cross1 [1077 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 14.2.0-6cross1 [2231 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 14.2.0-6cross1 [660 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 14.2.0-6cross1 [978 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-riscv64-cross all 14.2.0-6cross1 [5170 kB] Get:38 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu amd64 14.2.0-6cross1 [25.7 MB] Get:39 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:14.2.0-1 [1444 B] Get:40 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 6.11.2-1cross1 [2236 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.40-3cross1 [3085 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-riscv64-cross all 14.2.0-6cross1 [4939 kB] Get:43 http://localhost:3142/debian unstable/main amd64 g++-14-riscv64-linux-gnu amd64 14.2.0-6cross1 [14.3 MB] Get:44 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:45 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B] Get:46 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get:48 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:51 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:52 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:53 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:56 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:57 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:59 http://localhost:3142/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:60 http://localhost:3142/debian unstable/main riscv64 gcc-14-base riscv64 14.2.0-8 [47.2 kB] Get:61 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 14.2.0-8 [56.7 kB] Get:62 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.40-4 [2430 kB] Get:63 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 14.2.0-8 [8600 B] Get:64 http://localhost:3142/debian unstable/main riscv64 libffi8 riscv64 3.4.6-1 [21.4 kB] Get:65 http://localhost:3142/debian unstable/main riscv64 libblkid1 riscv64 2.40.2-11 [190 kB] Get:66 http://localhost:3142/debian unstable/main riscv64 libpcre2-8-0 riscv64 10.44-4 [281 kB] Get:67 http://localhost:3142/debian unstable/main riscv64 libselinux1 riscv64 3.7-3+b1 [80.0 kB] Get:68 http://localhost:3142/debian unstable/main riscv64 libmount1 riscv64 2.40.2-11 [216 kB] Get:69 http://localhost:3142/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Get:70 http://localhost:3142/debian unstable/main riscv64 libglib2.0-0t64 riscv64 2.82.2-3 [1513 kB] Get:71 http://localhost:3142/debian unstable/main riscv64 exonerate riscv64 2.4.0-5+b2 [2011 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:73 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:74 http://localhost:3142/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:75 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 14.2.0-8 [2365 kB] Get:76 http://localhost:3142/debian unstable/main riscv64 libcrypt1 riscv64 1:4.4.36-5 [105 kB] Get:77 http://localhost:3142/debian unstable/main riscv64 libcrypt-dev riscv64 1:4.4.36-5 [221 kB] Get:78 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.40-4 [3088 kB] Get:79 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 14.2.0-8 [131 kB] Get:80 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 14.2.0-8 [25.8 kB] Get:81 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 14.2.0-8 [1078 kB] Get:82 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 14.2.0-8 [2243 kB] Get:83 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 14.2.0-8 [708 kB] Get:84 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 14.2.0-8 [980 kB] Get:85 http://localhost:3142/debian unstable/main riscv64 libgcc-14-dev riscv64 14.2.0-8 [5202 kB] Get:86 http://localhost:3142/debian unstable/main riscv64 libstdc++-14-dev riscv64 14.2.0-8 [5233 kB] Get:87 http://localhost:3142/debian unstable/main riscv64 mummer riscv64 3.23+dfsg-8+b1 [664 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 129 MB in 2s (56.3 MB/s) Selecting previously unselected package readline-common. (Reading database ... 13027 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.14-1+b2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1+b2) ... Setting up readline-common (8.2-5) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libsigsegv2:amd64 (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... 13069 files and directories currently installed.) Preparing to unpack .../00-gawk_1%3a5.2.1-2+b1_amd64.deb ... Unpacking gawk (1:5.2.1-2+b1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../01-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package binutils-riscv64-linux-gnu. Preparing to unpack .../17-binutils-riscv64-linux-gnu_2.43.50.20241126-3_amd64.deb ... Unpacking binutils-riscv64-linux-gnu (2.43.50.20241126-3) ... Selecting previously unselected package gcc-14-riscv64-linux-gnu-base:amd64. Preparing to unpack .../18-gcc-14-riscv64-linux-gnu-base_14.2.0-6cross1_amd64.deb ... Unpacking gcc-14-riscv64-linux-gnu-base:amd64 (14.2.0-6cross1) ... Selecting previously unselected package cpp-14-riscv64-linux-gnu. Preparing to unpack .../19-cpp-14-riscv64-linux-gnu_14.2.0-6cross1_amd64.deb ... Unpacking cpp-14-riscv64-linux-gnu (14.2.0-6cross1) ... Selecting previously unselected package cpp-riscv64-linux-gnu. Preparing to unpack .../20-cpp-riscv64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking cpp-riscv64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gcc-14-cross-base. Preparing to unpack .../21-gcc-14-cross-base_14.2.0-6cross1_all.deb ... Unpacking gcc-14-cross-base (14.2.0-6cross1) ... Selecting previously unselected package libc6-riscv64-cross. Preparing to unpack .../22-libc6-riscv64-cross_2.40-3cross1_all.deb ... Unpacking libc6-riscv64-cross (2.40-3cross1) ... Selecting previously unselected package libgcc-s1-riscv64-cross. Preparing to unpack .../23-libgcc-s1-riscv64-cross_14.2.0-6cross1_all.deb ... Unpacking libgcc-s1-riscv64-cross (14.2.0-6cross1) ... Selecting previously unselected package libgomp1-riscv64-cross. Preparing to unpack .../24-libgomp1-riscv64-cross_14.2.0-6cross1_all.deb ... Unpacking libgomp1-riscv64-cross (14.2.0-6cross1) ... Selecting previously unselected package libitm1-riscv64-cross. Preparing to unpack .../25-libitm1-riscv64-cross_14.2.0-6cross1_all.deb ... Unpacking libitm1-riscv64-cross (14.2.0-6cross1) ... Selecting previously unselected package libatomic1-riscv64-cross. 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Preparing to unpack .../31-libubsan1-riscv64-cross_14.2.0-6cross1_all.deb ... Unpacking libubsan1-riscv64-cross (14.2.0-6cross1) ... Selecting previously unselected package libgcc-14-dev-riscv64-cross. Preparing to unpack .../32-libgcc-14-dev-riscv64-cross_14.2.0-6cross1_all.deb ... Unpacking libgcc-14-dev-riscv64-cross (14.2.0-6cross1) ... Selecting previously unselected package gcc-14-riscv64-linux-gnu. Preparing to unpack .../33-gcc-14-riscv64-linux-gnu_14.2.0-6cross1_amd64.deb ... Unpacking gcc-14-riscv64-linux-gnu (14.2.0-6cross1) ... Selecting previously unselected package gcc-riscv64-linux-gnu. Preparing to unpack .../34-gcc-riscv64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking gcc-riscv64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package linux-libc-dev-riscv64-cross. Preparing to unpack .../35-linux-libc-dev-riscv64-cross_6.11.2-1cross1_all.deb ... Unpacking linux-libc-dev-riscv64-cross (6.11.2-1cross1) ... Selecting previously unselected package libc6-dev-riscv64-cross. Preparing to unpack .../36-libc6-dev-riscv64-cross_2.40-3cross1_all.deb ... Unpacking libc6-dev-riscv64-cross (2.40-3cross1) ... Selecting previously unselected package libstdc++-14-dev-riscv64-cross. Preparing to unpack .../37-libstdc++-14-dev-riscv64-cross_14.2.0-6cross1_all.deb ... Unpacking libstdc++-14-dev-riscv64-cross (14.2.0-6cross1) ... Selecting previously unselected package g++-14-riscv64-linux-gnu. Preparing to unpack .../38-g++-14-riscv64-linux-gnu_14.2.0-6cross1_amd64.deb ... Unpacking g++-14-riscv64-linux-gnu (14.2.0-6cross1) ... Selecting previously unselected package g++-riscv64-linux-gnu. Preparing to unpack .../39-g++-riscv64-linux-gnu_4%3a14.2.0-1_amd64.deb ... Unpacking g++-riscv64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package crossbuild-essential-riscv64. Preparing to unpack .../40-crossbuild-essential-riscv64_12.12_all.deb ... Unpacking crossbuild-essential-riscv64 (12.12) ... 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Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../47-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../48-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../49-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../50-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../51-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../52-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../53-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../54-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package gcc-14-base:riscv64. Preparing to unpack .../55-gcc-14-base_14.2.0-8_riscv64.deb ... Unpacking gcc-14-base:riscv64 (14.2.0-8) ... Selecting previously unselected package libgcc-s1:riscv64. Preparing to unpack .../56-libgcc-s1_14.2.0-8_riscv64.deb ... Unpacking libgcc-s1:riscv64 (14.2.0-8) ... Selecting previously unselected package libc6:riscv64. Preparing to unpack .../57-libc6_2.40-4_riscv64.deb ... Unpacking libc6:riscv64 (2.40-4) ... Selecting previously unselected package libatomic1:riscv64. Preparing to unpack .../58-libatomic1_14.2.0-8_riscv64.deb ... Unpacking libatomic1:riscv64 (14.2.0-8) ... Selecting previously unselected package libffi8:riscv64. Preparing to unpack .../59-libffi8_3.4.6-1_riscv64.deb ... Unpacking libffi8:riscv64 (3.4.6-1) ... Selecting previously unselected package libblkid1:riscv64. Preparing to unpack .../60-libblkid1_2.40.2-11_riscv64.deb ... Unpacking libblkid1:riscv64 (2.40.2-11) ... Selecting previously unselected package libpcre2-8-0:riscv64. Preparing to unpack .../61-libpcre2-8-0_10.44-4_riscv64.deb ... Unpacking libpcre2-8-0:riscv64 (10.44-4) ... Selecting previously unselected package libselinux1:riscv64. Preparing to unpack .../62-libselinux1_3.7-3+b1_riscv64.deb ... Unpacking libselinux1:riscv64 (3.7-3+b1) ... Selecting previously unselected package libmount1:riscv64. Preparing to unpack .../63-libmount1_2.40.2-11_riscv64.deb ... Unpacking libmount1:riscv64 (2.40.2-11) ... Selecting previously unselected package zlib1g:riscv64. Preparing to unpack .../64-zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb ... 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Unpacking liblsan0:riscv64 (14.2.0-8) ... Selecting previously unselected package libtsan2:riscv64. Preparing to unpack .../77-libtsan2_14.2.0-8_riscv64.deb ... Unpacking libtsan2:riscv64 (14.2.0-8) ... Selecting previously unselected package libstdc++6:riscv64. Preparing to unpack .../78-libstdc++6_14.2.0-8_riscv64.deb ... Unpacking libstdc++6:riscv64 (14.2.0-8) ... Selecting previously unselected package libubsan1:riscv64. Preparing to unpack .../79-libubsan1_14.2.0-8_riscv64.deb ... Unpacking libubsan1:riscv64 (14.2.0-8) ... Selecting previously unselected package libgcc-14-dev:riscv64. Preparing to unpack .../80-libgcc-14-dev_14.2.0-8_riscv64.deb ... Unpacking libgcc-14-dev:riscv64 (14.2.0-8) ... Selecting previously unselected package libstdc++-14-dev:riscv64. Preparing to unpack .../81-libstdc++-14-dev_14.2.0-8_riscv64.deb ... Unpacking libstdc++-14-dev:riscv64 (14.2.0-8) ... Selecting previously unselected package mummer:riscv64. Preparing to unpack .../82-mummer_3.23+dfsg-8+b1_riscv64.deb ... Unpacking mummer:riscv64 (3.23+dfsg-8+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:riscv64. Preparing to unpack .../83-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up gcc-14-base:riscv64 (14.2.0-8) ... Setting up gawk (1:5.2.1-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up binutils-riscv64-linux-gnu (2.43.50.20241126-3) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14.2.0-6cross1) ... Setting up file (1:5.45-3+b1) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up gcc-14-riscv64-linux-gnu-base:amd64 (14.2.0-6cross1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up linux-libc-dev-riscv64-cross (6.11.2-1cross1) ... Setting up libc6-riscv64-cross (2.40-3cross1) ... Setting up libgomp1-riscv64-cross (14.2.0-6cross1) ... Setting up libatomic1-riscv64-cross (14.2.0-6cross1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libitm1-riscv64-cross (14.2.0-6cross1) ... Setting up cpp-14-riscv64-linux-gnu (14.2.0-6cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgcc-s1-riscv64-cross (14.2.0-6cross1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libc6-dev-riscv64-cross (2.40-3cross1) ... Setting up libasan8-riscv64-cross (14.2.0-6cross1) ... Setting up cpp-riscv64-linux-gnu (4:14.2.0-1) ... Setting up libstdc++6-riscv64-cross (14.2.0-6cross1) ... Setting up libubsan1-riscv64-cross (14.2.0-6cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up liblsan0-riscv64-cross (14.2.0-6cross1) ... Setting up libtsan2-riscv64-cross (14.2.0-6cross1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-14-dev-riscv64-cross (14.2.0-6cross1) ... Setting up libstdc++-14-dev-riscv64-cross (14.2.0-6cross1) ... Setting up debhelper (13.20) ... Setting up gcc-14-riscv64-linux-gnu (14.2.0-6cross1) ... Setting up g++-14-riscv64-linux-gnu (14.2.0-6cross1) ... Setting up gcc-riscv64-linux-gnu (4:14.2.0-1) ... Setting up g++-riscv64-linux-gnu (4:14.2.0-1) ... Setting up crossbuild-essential-riscv64 (12.12) ... Setting up libgcc-s1:riscv64 (14.2.0-8) ... Setting up libc6:riscv64 (2.40-4) ... Setting up libffi8:riscv64 (3.4.6-1) ... Setting up libasan8:riscv64 (14.2.0-8) ... Setting up libtsan2:riscv64 (14.2.0-8) ... Setting up libblkid1:riscv64 (2.40.2-11) ... Setting up libstdc++6:riscv64 (14.2.0-8) ... Setting up liblsan0:riscv64 (14.2.0-8) ... Setting up libitm1:riscv64 (14.2.0-8) ... Setting up zlib1g:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:riscv64 (1:4.4.36-5) ... Setting up libgomp1:riscv64 (14.2.0-8) ... Setting up libatomic1:riscv64 (14.2.0-8) ... Setting up libpcre2-8-0:riscv64 (10.44-4) ... Setting up libubsan1:riscv64 (14.2.0-8) ... Setting up libcrypt-dev:riscv64 (1:4.4.36-5) ... Setting up mummer:riscv64 (3.23+dfsg-8+b1) ... Setting up libc6-dev:riscv64 (2.40-4) ... Setting up libgcc-14-dev:riscv64 (14.2.0-8) ... Setting up libstdc++-14-dev:riscv64 (14.2.0-8) ... Setting up libselinux1:riscv64 (3.7-3+b1) ... Setting up libmount1:riscv64 (2.40.2-11) ... Setting up libglib2.0-0t64:riscv64 (2.82.2-3) ... /var/lib/dpkg/info/libglib2.0-0t64:riscv64.postinst: 37: /usr/lib/riscv64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0t64:riscv64.postinst: 38: /usr/lib/riscv64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up exonerate:riscv64 (2.4.0-5+b2) ... Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.40-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) amd64 (x86_64) Toolchain package versions: binutils_2.43.50.20241126-3 dpkg-dev_1.22.11 g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-4 libstdc++-14-dev_14.2.0-8 libstdc++-14-dev-riscv64-cross_14.2.0-6cross1 libstdc++6_14.2.0-8 libstdc++6-riscv64-cross_14.2.0-6cross1 linux-libc-dev_6.11.10-1 Package versions: apt_2.9.16 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.50.20241126-3 binutils-common_2.43.50.20241126-3 binutils-riscv64-linux-gnu_2.43.50.20241126-3 binutils-x86-64-linux-gnu_2.43.50.20241126-3 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-riscv64-linux-gnu_14.2.0-6cross1 cpp-14-x86-64-linux-gnu_14.2.0-8 cpp-riscv64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-riscv64_12.12 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 e2fsprogs_1.47.2~rc1-1 exonerate_2.4.0-5+b2 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-riscv64-linux-gnu_14.2.0-6cross1 g++-14-x86-64-linux-gnu_14.2.0-8 g++-riscv64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gawk_1:5.2.1-2+b1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-base_14.2.0-8 gcc-14-cross-base_14.2.0-6cross1 gcc-14-riscv64-linux-gnu_14.2.0-6cross1 gcc-14-riscv64-linux-gnu-base_14.2.0-6cross1 gcc-14-x86-64-linux-gnu_14.2.0-8 gcc-riscv64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.45-2 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.16 libarchive-zip-perl_1.68-1 libasan8_14.2.0-8 libasan8-riscv64-cross_14.2.0-6cross1 libatomic1_14.2.0-8 libatomic1-riscv64-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2 libbinutils_2.43.50.20241126-3 libblkid1_2.40.2-11 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-4 libc-dev-bin_2.40-4 libc6_2.40-4 libc6-dev_2.40-4 libc6-dev-riscv64-cross_2.40-3cross1 libc6-riscv64-cross_2.40-3cross1 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-8 libcom-err2_1.47.2~rc1-1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.50.20241126-3 libctf0_2.43.50.20241126-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.273 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libelf1t64_0.192-4 libext2fs2t64_1.47.2~rc1-1 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-8 libgcc-14-dev-riscv64-cross_14.2.0-6cross1 libgcc-s1_14.2.0-8 libgcc-s1-riscv64-cross_14.2.0-6cross1 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libglib2.0-0t64_2.82.2-3 libgmp10_2:6.3.0+dfsg-2+b2 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-8 libgomp1-riscv64-cross_14.2.0-6cross1 libgpg-error0_1.50-4 libgprofng0_2.43.50.20241126-3 libhogweed6t64_3.10-1+b1 libhwasan0_14.2.0-8 libicu72_72.1-5+b1 libidn2-0_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-8 libitm1-riscv64-cross_14.2.0-6cross1 libjansson4_2.14-2+b3 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-8 liblsan0-riscv64-cross_14.2.0-6cross1 liblz4-1_1.9.4-3+b1 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.2-11 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libnettle8t64_3.10-1+b1 libp11-kit0_0.25.5-2+b1 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libpcre2-8-0_10.44-4 libperl5.40_5.40.0-8 libpipeline1_1.5.8-1 libquadmath0_14.2.0-8 libreadline8t64_8.2-5 libseccomp2_2.5.5-2 libselinux1_3.7-3+b1 libsemanage-common_3.7-2 libsemanage2_3.7-2+b1 libsepol2_3.7-1 libsframe1_2.43.50.20241126-3 libsigsegv2_2.14-1+b2 libsmartcols1_2.40.2-11 libss2_1.47.2~rc1-1 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-8 libstdc++-14-dev-riscv64-cross_14.2.0-6cross1 libstdc++6_14.2.0-8 libstdc++6-riscv64-cross_14.2.0-6cross1 libsystemd0_257~rc3-1 libtasn1-6_4.19.0-3+b3 libtinfo6_6.5-2+b1 libtool_2.4.7-8 libtsan2_14.2.0-8 libtsan2-riscv64-cross_14.2.0-6cross1 libubsan1_14.2.0-8 libubsan1-riscv64-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b2 libudev1_257~rc3-1 libunistring5_1.2-1+b1 libuuid1_2.40.2-11 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxxhash0_0.8.2-2+b2 libzstd1_1.5.6+dfsg-1+b1 linux-libc-dev_6.11.10-1 linux-libc-dev-riscv64-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-11 login.defs_1:4.16.0-5 logsave_1.47.2~rc1-1 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 mount_2.40.2-11 mummer_3.23+dfsg-8+b1 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 openssl-provider-legacy_3.3.2-2 passwd_1:4.16.0-5 patch_2.7.6-7 perl_5.40.0-8 perl-base_5.40.0-8 perl-modules-5.40_5.40.0-8 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.11-1 tar_1.35+dfsg-3 tzdata_2024b-3 util-linux_2.40.2-11 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fsa Binary: fsa Architecture: any Version: 1.15.9+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://fsa.sourceforge.net/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/fsa Vcs-Git: https://salsa.debian.org/med-team/fsa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), mummer, exonerate, help2man Package-List: fsa deb science optional arch=any Checksums-Sha1: bff4c2f27d54db9891d70e2e314bafecf801cabb 558688 fsa_1.15.9+dfsg.orig.tar.xz 2116b756b7959867ce6ceb71a6d40c6acf9b459e 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Checksums-Sha256: c3a845122e08f5e3c0fb96ef5133270a386c4ac6198856fc56aa2a796c0a6377 558688 fsa_1.15.9+dfsg.orig.tar.xz 5c2cbb013a79debd8c1ca15e9cf3f9b76ad8f171e76b326a9e70823fd36cff37 13444 fsa_1.15.9+dfsg-6.debian.tar.xz Files: 8d6b1b18195dc5262113b1d363de88bf 558688 fsa_1.15.9+dfsg.orig.tar.xz b3b6cac1bebbb24ce81be6891155f3bc 13444 fsa_1.15.9+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+xYDYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE2aA//WlYn1kr0gp4xWVFytdACx6kvqmiEdStg sHIKciMkegewKTBdInLZ58tckLKWO8r+2W8FOEujrElAc+UXbzBKNg0HySHXHhM2 thUttzpZz2yREAI5Skl70FDrKPcCT36swjJbXWZRddLd7bYTnnPBAVv6KWa/U8aw B7f2d8RP9BGxdzu5HckPSHq/U4kzy0gjS9ywP4O+LKEx5SNiTzufLxjSXMNZE/ah tuCWgy/vxTTZt6iTRyEANwV2bnznvXyLa2HT2/GWuztLXICptqaNsL/qm9G/w0AL oCC8OcO0kbMBw03TUKSr0ASM6uMPGNwFtubVHeV0tRRRiuJaVqdgtwFGnmfpA8pK 4YrkltuKRt8d4H1CogTksxWVmyb/2TPG/QRwiX9UYJaTZRRVCKL1sPBJm6AMkVmt qNOs3REsLMdEezAV0wWWEDTJJBlyNKO6pLGCLcakgkd85t+AUg7iZIa+iRtL4xxX JtYSlkILVw0xVHWr8O+c2MsOMGpOBhWJKOTs0l54IFwszyLyk1F8s/b0CcNZrA45 t0XYBYEUTuC1z+K44ECzvtOxZLdgvpznJ1pDbBHmDlixI10m4xxQx8RXKEHVl11e jqRCsuLP6u+fehNQqn6X/vhtay8TtKxlYMz5ts47y4HBBO4F0j2/JvzgHR0QPcb3 YbYYMtXghso= =Zh/E -----END PGP SIGNATURE----- gpgv: Signature made Sun Nov 15 17:07:02 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fsa_1.15.9+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting fsa in /<> dpkg-source: info: unpacking fsa_1.15.9+dfsg.orig.tar.xz dpkg-source: info: unpacking fsa_1.15.9+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-display.patch dpkg-source: info: applying removed-pdf-only-docs.patch dpkg-source: info: applying privacy_breach_logo.patch dpkg-source: info: applying fixed-check-for-m64-flag.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.Aa3F6fa9DU/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-68903ee3-f10e-4c7d-8935-c0e09ac9bf59 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package fsa dpkg-buildpackage: info: source version 1.15.9+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:42: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.in:42: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.in:42: the top level configure.in:47: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.in:47: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.in:47: the top level configure.in:60: warning: The macro 'AC_LANG_CPLUSPLUS' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/c.m4:270: AC_LANG_CPLUSPLUS is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:60: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.in:60: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... acinclude.m4:5: AC_CXX_DYNAMIC_CAST is expanded from... configure.in:60: the top level configure.in:268: warning: AC_OUTPUT should be used without arguments. configure.in:268: You should run autoupdate. configure.ac:3: warning: file 'version.m4' included several times dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=riscv64-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for riscv64-linux-gnu-strip... riscv64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1000' is supported by ustar format... yes checking whether GID '1000' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for riscv64-linux-gnu-gcc... riscv64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether riscv64-linux-gnu-gcc accepts -g... yes checking for riscv64-linux-gnu-gcc option to enable C11 features... none needed checking whether riscv64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of riscv64-linux-gnu-gcc... none checking for riscv64-linux-gnu-ar... riscv64-linux-gnu-ar checking the archiver (riscv64-linux-gnu-ar) interface... ar checking for riscv64-linux-gnu-gcc... (cached) riscv64-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether riscv64-linux-gnu-gcc accepts -g... (cached) yes checking for riscv64-linux-gnu-gcc option to enable C11 features... (cached) none needed checking whether riscv64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of riscv64-linux-gnu-gcc... (cached) none checking for riscv64-linux-gnu-g++... riscv64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether riscv64-linux-gnu-g++ accepts -g... yes checking for riscv64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of riscv64-linux-gnu-g++... none checking for gawk... (cached) gawk checking whether make sets $(MAKE)... (cached) yes checking for riscv64-linux-gnu-ranlib... riscv64-linux-gnu-ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for _Bool... no checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking for unsigned long long int... yes checking for uintmax_t... yes checking for ptrdiff_t... yes checking for tr1/unordered_map... yes checking for tr1/unordered_set... yes checking for fork... yes checking for vfork... yes checking for working fork... cross configure: WARNING: result yes guessed because of cross compilation checking for working vfork... (cached) yes checking for floor... yes checking for memmove... yes checking for pow... yes checking for regcomp... yes checking for sqrt... yes checking for strchr... yes checking for strcspn... yes checking for strspn... yes checking for strstr... yes checking build system type... x86_64-pc-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking if gcc accepts -m64... no checking for mummer... /usr/bin/mummer checking for exonerate... /usr/bin/exonerate checking for riscv64-linux-gnu-g++ options needed to detect all undeclared functions... none needed checking for struct sysinfo.totalram... yes checking for struct sysinfo.mem_unit... yes checking whether sysctl is declared... no checking whether CTL_HW is declared... no checking whether HW_PHYSMEM is declared... no checking for javac... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/main/Makefile config.status: creating src/manager/Makefile config.status: creating src/fsa/Makefile config.status: creating src/annealing/Makefile config.status: creating src/math/Makefile config.status: creating src/util/Makefile config.status: creating src/seq/Makefile config.status: creating perl/Makefile config.status: creating examples/Makefile config.status: creating html/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands -- FSA 1.15.9 Configuration Results -- C++ compiler: riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG GCC version: riscv64-linux-gnu-gcc (Debian 14.2.0-6) 14.2.0 Host System type: riscv64-unknown-linux-gnu Install prefix: /usr See config.h for further configuration information. Email with questions and bug reports. dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src/util make[3]: Entering directory '/<>/src/util' riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dexception.o dexception.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from dexception.cc:4: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/util/sstring.h:5: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o logfile.o logfile.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/logfile.h:13, from logfile.cc:1: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/istream:40, from /usr/riscv64-linux-gnu/include/c++/14/fstream:40, from ../../src/util/logfile.h:8: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o memcheck.o memcheck.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o misc.o misc.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from misc.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/ostream:40, from /usr/riscv64-linux-gnu/include/c++/14/iostream:41, from ../../src/util/misc.h:14: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o opts_list.o opts_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ opts_list.cc:99:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 99 | SET_VERSION_INFO(*this); | ^ In file included from opts_list.cc:2: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ opts_list.cc:99:3: note: in expansion of macro ‘SET_VERSION_INFO’ 99 | SET_VERSION_INFO(*this); | ^~~~~~~~~~~~~~~~ In file included from ../../src/util/sstring.h:14, from ../../src/util/dexception.h:6, from ../../src/util/opts_list.h:10: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/ostream:40, from /usr/riscv64-linux-gnu/include/c++/14/iostream:41, from ../../src/util/opts_list.h:4: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o regexp.o regexp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ regexp.cc: In member function ‘char* CRegCompilerBase::regatom(int*)’: regexp.cc:995:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 995 | register char ch; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sstring.o sstring.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/sstring.h:14, from sstring.cc:5: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/util/sstring.h:5: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libutil.a riscv64-linux-gnu-ar cru libutil.a dexception.o logfile.o memcheck.o misc.o opts_list.o regexp.o sstring.o riscv64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') riscv64-linux-gnu-ranlib libutil.a make[3]: Leaving directory '/<>/src/util' Making all in src/math make[3]: Entering directory '/<>/src/math' riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mathematics.o mathematics.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from mathematics.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/bits/refwrap.h:39, from /usr/riscv64-linux-gnu/include/c++/14/vector:68, from ../../src/math/mathematics.h:13: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mst.o mst.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mst.h:11, from mst.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/ostream:40, from /usr/riscv64-linux-gnu/include/c++/14/iostream:41, from ../../src/util/misc.h:14: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libmath.a riscv64-linux-gnu-ar cru libmath.a mathematics.o mst.o riscv64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') riscv64-linux-gnu-ranlib libmath.a make[3]: Leaving directory '/<>/src/math' Making all in src/seq make[3]: Entering directory '/<>/src/seq' riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alphabet.o alphabet.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/alphabet.h:20, from alphabet.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/seq/alphabet.h:15: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment.o alignment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from alignment.cc:13: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/numeric:75, from alignment.cc:8: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ alignment.cc: In member function ‘void fsa::Alignment::read_mfa(const std::string&, bool, bool)’: alignment.cc:295:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:295:31: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 295 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:1043:5: note: declared here 1043 | not1(const _Predicate& __pred) | ^~~~ alignment.cc: In member function ‘void fsa::Stockholm::read_stockholm(const std::string&, bool, bool)’: alignment.cc:732:40: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = char; _Result = bool]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ alignment.cc:732:26: warning: ‘constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = pointer_to_unary_function]’ is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 732 | std::not1 (std::ptr_fun (Alignment::is_gap_char))); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:1043:5: note: declared here 1043 | not1(const _Predicate& __pred) | ^~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gff.o gff.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from gff.cc:14: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/istream:40, from /usr/riscv64-linux-gnu/include/c++/14/fstream:40, from gff.cc:8: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from gff.cc:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mercator.o mercator.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from ../../src/seq/mercator.h:13, from mercator.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/numeric:75, from mercator.cc:9: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence.o sequence.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from sequence.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/util/regexp.h:8, from sequence.cc:10: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from sequence.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o similarity_matrix.o similarity_matrix.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/math/mathematics.h:23, from similarity_matrix.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/ostream:40, from /usr/riscv64-linux-gnu/include/c++/14/iostream:41, from similarity_matrix.cc:8: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/seq/similarity_matrix.h:13, from similarity_matrix.cc:12: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libseq.a riscv64-linux-gnu-ar cru libseq.a alphabet.o alignment.o gff.o mercator.o sequence.o similarity_matrix.o riscv64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') riscv64-linux-gnu-ranlib libseq.a make[3]: Leaving directory '/<>/src/seq' Making all in src/manager make[3]: Entering directory '/<>/src/manager' riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o manager.o manager.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/manager/manager.h:12, from manager.cc:6: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from manager.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o mw_adapter.o mw_adapter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_adapter.o db_adapter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o db_misc.o db_misc.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71, from db_misc.cc:7: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ rm -f libmanager.a riscv64-linux-gnu-ar cru libmanager.a manager.o mw_adapter.o db_adapter.o db_misc.o riscv64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') riscv64-linux-gnu-ranlib libmanager.a make[3]: Leaving directory '/<>/src/manager' Making all in src/fsa make[3]: Entering directory '/<>/src/fsa' riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o algebras.o algebras.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from algebras.cc:27: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoacid_indel2dp.o aminoacid_indel2dp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from aminoacid_indel2dp.h:28, from aminoacid_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoacid_indel2dp.cc: In function ‘Algebra Forward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidIndel2AlignBaumWelch&, AminoAcidIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1039:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1039 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1041:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1041 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra Backward(AminoAcidIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoacid_indel2dp.cc:1373:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1373 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1375:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1375 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1320:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1320 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra ForwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1622:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1622 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1624:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1624 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:1568:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1568 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidIndel2AlignWithBandingBaumWelch&, AminoAcidIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:1877:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1877 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:1879:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1879 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoacid_indel2dp.cc: In function ‘Algebra BackwardBanding(AminoAcidIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoacid_indel2dp.cc:2243:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2243 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoacid_indel2dp.cc:2245:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2245 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoacid_indel2dp.cc:2189:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2189 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o aminoaciddp.o aminoaciddp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from aminoaciddp.h:28, from aminoaciddp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ aminoaciddp.cc: In function ‘Algebra Forward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:821:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 821 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:823:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 823 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelch(AminoAcidAlignBaumWelch&, AminoAcidAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1009:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1009 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1011:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1011 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra Backward(AminoAcidAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: aminoaciddp.cc:1283:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1283 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1285:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1285 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1230:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1230 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra ForwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1502:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1502 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1504:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1504 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1448:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1448 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBaumWelchBanding(AminoAcidAlignWithBandingBaumWelch&, AminoAcidAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:1727:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1727 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:1729:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1729 | register bfloat iTempProb[3]; | ^~~~~~~~~ aminoaciddp.cc: In function ‘Algebra BackwardBanding(AminoAcidAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: aminoaciddp.cc:2033:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2033 | register double iTempResult[1]; | ^~~~~~~~~~~ aminoaciddp.cc:2035:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2035 | register bfloat iTempProb[1]; | ^~~~~~~~~ aminoaciddp.cc:1979:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1979 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o anchors.o anchors.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/fsa/anchors.h:17, from anchors.cc:16: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ anchors.cc: In member function ‘fsa::Anchors fsa::Exonerate_adapter::call_exonerate(const std::string&, const std::string&, int) const’: anchors.cc:863:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 863 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store exonerate results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:864:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 864 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc: In member function ‘fsa::Anchors fsa::Mummer_adapter::call_mummer(const std::string&, const std::string&, size_t) const’: anchors.cc:1100:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1100 | freopen (output_file.c_str(), "w", stdout); // capture stdout (send to file output_file) to store mummer results | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.cc:1101:13: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1101 | freopen ("/dev/null", "a", stderr); // capture stderr (send to trash) so that it doesn't mess up our logging | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o constraints.o constraints.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o fsa.o fsa.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ fsa.cc:25:125: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^ In file included from ../../src/fsa/fsa.h:66, from fsa.cc:11: ../../src/util/opts_list.h:146:153: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 146 | #define SET_VERSION_INFO(OPTS) (OPTS).version_info.clear(); (OPTS).version_info << PACKAGE_STRING << " (" << DART_DEBUG_MODE_STRING << ") compiled " << __DATE__ << " " << __TIME__ << "\n"; | ^~~~~~~~ ../../src/util/opts_list.h:152:153: note: in expansion of macro ‘SET_VERSION_INFO’ 152 | #define INIT_CONSTRUCTED_OPTS_LIST(OPTS,ARGS,SYNTAX,SHORTDESC) OPTS.short_description = (SHORTDESC); OPTS.syntax = (SYNTAX); OPTS.expect_args = (ARGS); SET_VERSION_INFO(OPTS); Log_stream::add_opts(OPTS); | ^~~~~~~~~~~~~~~~ fsa.cc:25:3: note: in expansion of macro ‘INIT_CONSTRUCTED_OPTS_LIST’ 25 | INIT_CONSTRUCTED_OPTS_LIST (opts, -1, "[options] ", "Distance-based alignment of DNA, RNA and proteins."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../../src/fsa/anchors.h:17, from ../../src/fsa/fsa.h:71: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from ../../src/fsa/anchors.h:20: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o model.o model.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25, from model.cc:8: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ In file included from ../../src/fsa/model.h:32: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotide_indel2dp.o nucleotide_indel2dp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from nucleotide_indel2dp.h:28, from nucleotide_indel2dp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotide_indel2dp.cc: In function ‘Algebra Forward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideIndel2AlignBaumWelch&, NucleotideIndel2AlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:975:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 975 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:977:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 977 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra Backward(NucleotideIndel2AlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotide_indel2dp.cc:1277:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1277 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1279:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1279 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1256:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1256 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra ForwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1494:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1494 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1496:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1496 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:1472:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1472 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideIndel2AlignWithBandingBaumWelch&, NucleotideIndel2AlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:1717:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1717 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:1719:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1719 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotide_indel2dp.cc: In function ‘Algebra BackwardBanding(NucleotideIndel2AlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotide_indel2dp.cc:2051:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2051 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotide_indel2dp.cc:2053:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2053 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotide_indel2dp.cc:2029:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 2029 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o nucleotidedp.o nucleotidedp.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from nucleotidedp.h:28, from nucleotidedp.cc:24: algebras.h: In function ‘BFloat double2bfloat(double)’: algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ nucleotidedp.cc: In function ‘Algebra Forward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:789:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 789 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:791:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 791 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:768:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 768 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelch(NucleotideAlignBaumWelch&, NucleotideAlignDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:945:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 945 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:947:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 947 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra Backward(NucleotideAlignDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&)’: nucleotidedp.cc:1187:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1187 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1189:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1189 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1166:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1166 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra ForwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1374:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1374 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1376:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1376 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1352:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1352 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBaumWelchBanding(NucleotideAlignWithBandingBaumWelch&, NucleotideAlignWithBandingDPTable*, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1567:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1567 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1569:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1569 | register bfloat iTempProb[3]; | ^~~~~~~~~ nucleotidedp.cc: In function ‘Algebra BackwardBanding(NucleotideAlignWithBandingDPTable**, const std::string&, const std::string&, const std::vector&, const std::vector >&, const std::vector >&, int)’: nucleotidedp.cc:1841:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1841 | register double iTempResult[1]; | ^~~~~~~~~~~ nucleotidedp.cc:1843:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1843 | register bfloat iTempProb[1]; | ^~~~~~~~~ nucleotidedp.cc:1819:9: warning: variable ‘iPrevSlowCoord’ set but not used [-Wunused-but-set-variable] 1819 | int iPrevSlowCoord; | ^~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wno-deprecated -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o sequence_pair_selector.o sequence_pair_selector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ rm -f libfsa.a riscv64-linux-gnu-ar cru libfsa.a algebras.o aminoacid_indel2dp.o aminoaciddp.o anchors.o constraints.o fsa.o model.o nucleotide_indel2dp.o nucleotidedp.o sequence_pair_selector.o riscv64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') riscv64-linux-gnu-ranlib libfsa.a make[3]: Leaving directory '/<>/src/fsa' Making all in src/annealing make[3]: Entering directory '/<>/src/annealing' riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o alignment_DAG.o alignment_DAG.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from alignment_DAG.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/bits/refwrap.h:39, from /usr/riscv64-linux-gnu/include/c++/14/deque:67, from /usr/riscv64-linux-gnu/include/c++/14/stack:62, from ../../src/annealing/alignment_DAG.h:39: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o dotplot.o dotplot.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from dotplot.h:13, from dotplot.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/ostream:40, from /usr/riscv64-linux-gnu/include/c++/14/iostream:41, from ../../src/util/misc.h:14: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from dotplot.h:14: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/riscv64-linux-gnu/include/c++/14/string:47: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from dotplot.h:15: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o tree_weights.o tree_weights.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/util/logfile.h:13, from tree_weights.cc:8: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/istream:40, from /usr/riscv64-linux-gnu/include/c++/14/fstream:40, from ../../src/util/logfile.h:8: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/annealing/tree_weights.h:18, from tree_weights.cc:9: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rm -f libannealing.a riscv64-linux-gnu-ar cru libannealing.a alignment_DAG.o dotplot.o tree_weights.o riscv64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') riscv64-linux-gnu-ranlib libannealing.a make[3]: Leaving directory '/<>/src/annealing' Making all in src/main make[3]: Entering directory '/<>/src/main' riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o main.o main.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/riscv64-linux-gnu/include/c++/14/ext/hash_map:60, from ../../src/fsa/dptables.h:43, from ../../src/fsa/mybanding.h:25, from ../../src/fsa/model.h:24, from ../../src/fsa/anchors.h:20, from ../../src/fsa/fsa.h:71, from main.cc:8: /usr/riscv64-linux-gnu/include/c++/14/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from ../../src/fsa/fsa.h:65: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/ostream:40, from /usr/riscv64-linux-gnu/include/c++/14/iostream:41, from ../../src/fsa/fsa.h:61: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21, from ../../src/fsa/fsa.h:68: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/dotplot.h:14, from ../../src/fsa/anchors.h:16: ../../src/util/array2d.h:159:38: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 159 | struct xy_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/riscv64-linux-gnu/include/c++/14/string:47: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from ../../src/fsa/anchors.h:17: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ In file included from ../../src/fsa/anchors.h:18: ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from ../../src/fsa/nucleotidedp.h:28, from ../../src/fsa/model.h:25: ../../src/fsa/algebras.h: In function ‘BFloat double2bfloat(double)’: ../../src/fsa/algebras.h:195:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register BFloat a( 0.0, 0 ); | ^ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_product(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:211:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 211 | register BFloat sf(a.f*b.f,a.e+b.e); | ^~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_double_product(const BFloat&, double)’: ../../src/fsa/algebras.h:218:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 218 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘void bfloat_pr_double_product_accum(BFloat&, double)’: ../../src/fsa/algebras.h:231:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 231 | register double mantisse = a.f*b; | ^~~~~~~~ ../../src/fsa/algebras.h: In function ‘BFloat bfloat_pr_quotient(const BFloat&, const BFloat&)’: ../../src/fsa/algebras.h:238:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 238 | register BFloat sf(a.f/b.f, a.e-b.e); | ^~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o fsa main.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o gapcleaner.o gapcleaner.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/annealing/alignment_DAG.h:56, from gapcleaner.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/bits/refwrap.h:39, from /usr/riscv64-linux-gnu/include/c++/14/deque:67, from /usr/riscv64-linux-gnu/include/c++/14/stack:62, from ../../src/annealing/alignment_DAG.h:39: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/annealing/alignment_DAG.h:58: ../../src/annealing/SparseMatrix.h: In constructor ‘fsa::SparseMatrix::SparseMatrix(size_t, size_t, size_t, size_t, const fsa::Post_probs&)’: ../../src/annealing/SparseMatrix.h:241:11: warning: variable ‘yprev’ set but not used [-Wunused-but-set-variable] 241 | int yprev = -1; // the previous y-coordinate | ^~~~~ ../../src/annealing/alignment_DAG.h: At global scope: ../../src/annealing/alignment_DAG.h:415:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 415 | class greater_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:426:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 426 | class smaller_index : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:436:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 436 | class smaller_weight : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/annealing/alignment_DAG.h:447:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 447 | class column_pair_hash : std::unary_function, bit64_t> { | ^~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o gapcleaner gapcleaner.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o isect_mercator_alignment_gff.o isect_mercator_alignment_gff.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/gff.h:17, from isect_mercator_alignment_gff.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/istream:40, from /usr/riscv64-linux-gnu/include/c++/14/fstream:40, from isect_mercator_alignment_gff.cc:9: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from isect_mercator_alignment_gff.cc:13: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o isect_mercator_alignment_gff isect_mercator_alignment_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_coords.o map_coords.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from map_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/bits/stl_tree.h:65, from /usr/riscv64-linux-gnu/include/c++/14/set:62, from ../../src/seq/alignment.h:13: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_coords map_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o map_gff_coords.o map_gff_coords.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/gff.h:17, from map_gff_coords.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/seq/gff.h:12: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from ../../src/seq/alignment.h:16, from map_gff_coords.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o map_gff_coords map_gff_coords.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o percentid.o percentid.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from percentid.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o percentid percentid.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o prot2codon.o prot2codon.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from prot2codon.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o prot2codon prot2codon.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta.o slice_fasta.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from slice_fasta.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta slice_fasta.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_fasta_gff.o slice_fasta_gff.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/gff.h:17, from slice_fasta_gff.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/seq/gff.h:12: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/sequence.h:21, from slice_fasta_gff.cc:12: ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_fasta_gff slice_fasta_gff.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o slice_mercator_alignment.o slice_mercator_alignment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from ../../src/seq/alignment.h:16, from slice_mercator_alignment.cc:12: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from /usr/riscv64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/riscv64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/riscv64-linux-gnu/include/c++/14/ios:44, from /usr/riscv64-linux-gnu/include/c++/14/istream:40, from /usr/riscv64-linux-gnu/include/c++/14/fstream:40, from slice_mercator_alignment.cc:9: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o slice_mercator_alignment slice_mercator_alignment.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -c -o translate.o translate.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from ../../src/seq/sequence.h:19, from translate.cc:11: ../../src/util/misc.h:187:30: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 187 | struct Duple_less : std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/riscv64-linux-gnu/include/c++/14/string:49, from ../../src/seq/sequence.h:13: /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/util/misc.h:203:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 203 | struct Map_value_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../src/seq/interval.h:13, from ../../src/seq/sequence.h:21: ../../src/seq/gff.h:185:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 185 | struct GFF_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../src/seq/interval.h:112:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 112 | struct Genomic_interval_less : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/riscv64-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wall -Wno-tautological-compare -D_FILE_OFFSET_BITS=64 -O3 -ffast-math -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wl,-z,relro -Wl,-z,now -o translate translate.o ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/fsa/libfsa.a ../../src/annealing/libannealing.a ../../src/manager/libmanager.a ../../src/seq/libseq.a ../../src/util/libutil.a ../../src/math/libmath.a make[3]: Leaving directory '/<>/src/main' Making all in perl make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/perl' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' Making all in html make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/html' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/fsa/ -a make -j1 install DESTDIR=/<>/fsa-1.15.9\+dfsg/debian/fsa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src/util make[2]: Entering directory '/<>/src/util' make[3]: Entering directory '/<>/src/util' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/util' make[2]: Leaving directory '/<>/src/util' Making install in src/math make[2]: Entering directory '/<>/src/math' make[3]: Entering directory '/<>/src/math' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/math' make[2]: Leaving directory '/<>/src/math' Making install in src/seq make[2]: Entering directory '/<>/src/seq' make[3]: Entering directory '/<>/src/seq' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/seq' make[2]: Leaving directory '/<>/src/seq' Making install in src/manager make[2]: Entering directory '/<>/src/manager' make[3]: Entering directory '/<>/src/manager' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/manager' make[2]: Leaving directory '/<>/src/manager' Making install in src/fsa make[2]: Entering directory '/<>/src/fsa' make[3]: Entering directory '/<>/src/fsa' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/fsa' make[2]: Leaving directory '/<>/src/fsa' Making install in src/annealing make[2]: Entering directory '/<>/src/annealing' make[3]: Entering directory '/<>/src/annealing' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/annealing' make[2]: Leaving directory '/<>/src/annealing' Making install in src/main make[2]: Entering directory '/<>/src/main' make[3]: Entering directory '/<>/src/main' /usr/bin/mkdir -p '/<>/debian/fsa/usr/bin' /usr/bin/install -c fsa gapcleaner isect_mercator_alignment_gff map_coords map_gff_coords percentid prot2codon slice_fasta slice_fasta_gff slice_mercator_alignment translate '/<>/debian/fsa/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src/main' make[2]: Leaving directory '/<>/src/main' Making install in perl make[2]: Entering directory '/<>/perl' make[3]: Entering directory '/<>/perl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/perl' make[2]: Leaving directory '/<>/perl' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' Making install in html make[2]: Entering directory '/<>/html' make[3]: Entering directory '/<>/html' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/html' make[2]: Leaving directory '/<>/html' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mv /<>/debian/fsa/usr/bin/translate /<>/debian/fsa/usr/bin/fsa-translate make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'fsa' in '../fsa_1.15.9+dfsg-6_riscv64.deb'. dpkg-deb: building package 'fsa-dbgsym' in '../fsa-dbgsym_1.15.9+dfsg-6_riscv64.deb'. # found automatically: --with-mummer=/usr/bin/mummer --with-exonerate=/usr/bin/exonerate dpkg-genbuildinfo --build=any -O../fsa_1.15.9+dfsg-6_riscv64.buildinfo dpkg-genchanges --build=any -O../fsa_1.15.9+dfsg-6_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-11-29T19:55:32Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ----------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fsa_1.15.9+dfsg-6_riscv64.changes: ---------------------------------- Format: 1.8 Date: Sun, 15 Nov 2020 17:45:20 +0100 Source: fsa Binary: fsa fsa-dbgsym Built-For-Profiles: cross nocheck Architecture: riscv64 Version: 1.15.9+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fsa - Fast Statistical Alignment of protein, RNA or DNA sequences Changes: fsa (1.15.9+dfsg-6) unstable; urgency=medium . * Fix typo Checksums-Sha1: bbbf96e36156bca8291dbe6cf6e64a26f61b1c8e 10987908 fsa-dbgsym_1.15.9+dfsg-6_riscv64.deb 6fa2134fd7f3b5027f8acd010e4a78c8bd42dd23 5247 fsa_1.15.9+dfsg-6_riscv64.buildinfo 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d9a0f3f03b63591ca7f1e3c1f9a789e4 10987908 fsa-dbgsym_1.15.9+dfsg-6_riscv64.deb 04cd0633f4393f0d80d9dfd06744a889 704200 fsa_1.15.9+dfsg-6_riscv64.deb Checksums-Sha1: bbbf96e36156bca8291dbe6cf6e64a26f61b1c8e 10987908 fsa-dbgsym_1.15.9+dfsg-6_riscv64.deb bcd27f915096d2e5f456417f77b0ae57d2319f27 704200 fsa_1.15.9+dfsg-6_riscv64.deb Checksums-Sha256: 71e6750a08bbdf36fb8c207e8b73d1b1e085195e42bd5268ba9563cf370c93eb 10987908 fsa-dbgsym_1.15.9+dfsg-6_riscv64.deb d714a5979dd2b25e1a1e092d358a1b9a9549c0a85bef25721a1080b60a4f89dd 704200 fsa_1.15.9+dfsg-6_riscv64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 29 Nov 2024 19:55:31 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.5), bash (= 5.2.32-1+b2), binutils (= 2.43.50.20241126-3), binutils-common (= 2.43.50.20241126-3), binutils-x86-64-linux-gnu (= 2.43.50.20241126-3), bsdextrautils (= 2.40.2-11), bsdutils (= 1:2.40.2-11), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-8), cpp-14-x86-64-linux-gnu (= 14.2.0-8), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), exonerate (= 2.4.0-5+b2), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-8), g++-14-x86-64-linux-gnu (= 14.2.0-8), g++-x86-64-linux-gnu (= 4:14.2.0-1), gawk (= 1:5.2.1-2+b1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-8), gcc-14-base (= 14.2.0-8), gcc-14-x86-64-linux-gnu (= 14.2.0-8), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.67), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-8), libatomic1 (= 14.2.0-8), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2), libbinutils (= 2.43.50.20241126-3), libblkid1 (= 2.40.2-11), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-4), libc-dev-bin (= 2.40-4), libc6 (= 2.40-4), libc6-dev (= 2.40-4), libcap-ng0 (= 0.8.5-4), libcap2 (= 1:2.66-5+b1), libcc1-0 (= 14.2.0-8), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.50.20241126-3), libctf0 (= 2.43.50.20241126-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.273), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.192-4), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.2.0-8), libgcc-s1 (= 14.2.0-8), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libglib2.0-0t64 (= 2.82.2-3), libgmp10 (= 2:6.3.0+dfsg-2+b2), libgomp1 (= 14.2.0-8), libgprofng0 (= 2.43.50.20241126-3), libhwasan0 (= 14.2.0-8), libicu72 (= 72.1-5+b1), libisl23 (= 0.27-1), libitm1 (= 14.2.0-8), libjansson4 (= 2.14-2+b3), liblocale-gettext-perl (= 1.07-7+b1), liblsan0 (= 14.2.0-8), liblzma5 (= 5.6.3-1+b1), libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.2-11), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libpam-modules (= 1.5.3-7+b1), libpam-modules-bin (= 1.5.3-7+b1), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7+b1), libpcre2-8-0 (= 10.44-4), libperl5.40 (= 5.40.0-8), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-8), libreadline8t64 (= 8.2-5), libseccomp2 (= 2.5.5-2), libselinux1 (= 3.7-3+b1), libsframe1 (= 2.43.50.20241126-3), libsigsegv2 (= 2.14-1+b2), libsmartcols1 (= 2.40.2-11), libssl3t64 (= 3.3.2-2), libstdc++-14-dev (= 14.2.0-8), libstdc++6 (= 14.2.0-8), libsystemd0 (= 257~rc3-1), libtinfo6 (= 6.5-2+b1), libtool (= 2.4.7-8), libtsan2 (= 14.2.0-8), libubsan1 (= 14.2.0-8), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257~rc3-1), libunistring5 (= 1.2-1+b1), libuuid1 (= 2.40.2-11), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1), libzstd1 (= 1.5.6+dfsg-1+b1), linux-libc-dev (= 6.11.10-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), mummer (= 3.23+dfsg-8+b1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2+b1), openssl-provider-legacy (= 3.3.2-2), patch (= 2.7.6-7), perl (= 5.40.0-8), perl-base (= 5.40.0-8), perl-modules-5.40 (= 5.40.0-8), po-debconf (= 1.0.21+nmu1), readline-common (= 8.2-5), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.11-1), tar (= 1.35+dfsg-3), util-linux (= 2.40.2-11), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1605458720" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fsa-dbgsym_1.15.9+dfsg-6_riscv64.deb ------------------------------------ new Debian package, version 2.0. size 10987908 bytes: control archive=1096 bytes. 780 bytes, 12 lines control 1247 bytes, 12 lines md5sums Package: fsa-dbgsym Source: fsa Version: 1.15.9+dfsg-6 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 13934 Depends: fsa (= 1.15.9+dfsg-6) Section: debug Priority: optional Description: debug symbols for fsa Build-Ids: 07d387a5e2dab0346bcf056375c0cd6cda2ad749 156a0ad03059b45c3d79b4a9484f206310af63b8 4d4e2426f7939c9473d8b3c8c043725cb0169aef 532ea22512b98b8b8b269e8101389ba30bbeea36 6a1dee7586c6be010bffadcb8808628f5967edb3 889b178a7542a598b8fdb968090ec07b07a04f86 89871afdd97f015f1dd773301c223a3a592cb765 9e6abb81f276cc5f1b6e5cf0a42e4f341cec5c7c d1e0a67e63d51bbd2b29527755642eea935fa298 e7d20cf04ab9ef3ce73fb517dfee6f09b3c8afd2 ea2f142069b403cbf0e6dc18a941012f0d8ee85e drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/07/ -rw-r--r-- root/root 1530800 2020-11-15 16:45 ./usr/lib/debug/.build-id/07/d387a5e2dab0346bcf056375c0cd6cda2ad749.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/15/ -rw-r--r-- root/root 745224 2020-11-15 16:45 ./usr/lib/debug/.build-id/15/6a0ad03059b45c3d79b4a9484f206310af63b8.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/4d/ -rw-r--r-- root/root 1081080 2020-11-15 16:45 ./usr/lib/debug/.build-id/4d/4e2426f7939c9473d8b3c8c043725cb0169aef.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/53/ -rw-r--r-- root/root 567728 2020-11-15 16:45 ./usr/lib/debug/.build-id/53/2ea22512b98b8b8b269e8101389ba30bbeea36.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/6a/ -rw-r--r-- root/root 1057272 2020-11-15 16:45 ./usr/lib/debug/.build-id/6a/1dee7586c6be010bffadcb8808628f5967edb3.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/88/ -rw-r--r-- root/root 4489152 2020-11-15 16:45 ./usr/lib/debug/.build-id/88/9b178a7542a598b8fdb968090ec07b07a04f86.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/89/ -rw-r--r-- root/root 1090184 2020-11-15 16:45 ./usr/lib/debug/.build-id/89/871afdd97f015f1dd773301c223a3a592cb765.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/9e/ -rw-r--r-- root/root 542904 2020-11-15 16:45 ./usr/lib/debug/.build-id/9e/6abb81f276cc5f1b6e5cf0a42e4f341cec5c7c.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/d1/ -rw-r--r-- root/root 1074280 2020-11-15 16:45 ./usr/lib/debug/.build-id/d1/e0a67e63d51bbd2b29527755642eea935fa298.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/e7/ -rw-r--r-- root/root 541928 2020-11-15 16:45 ./usr/lib/debug/.build-id/e7/d20cf04ab9ef3ce73fb517dfee6f09b3c8afd2.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.build-id/ea/ -rw-r--r-- root/root 549408 2020-11-15 16:45 ./usr/lib/debug/.build-id/ea/2f142069b403cbf0e6dc18a941012f0d8ee85e.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debug/.dwz/riscv64-linux-gnu/ -rw-r--r-- root/root 970000 2020-11-15 16:45 ./usr/lib/debug/.dwz/riscv64-linux-gnu/fsa.debug drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa-dbgsym -> fsa fsa_1.15.9+dfsg-6_riscv64.deb ----------------------------- new Debian package, version 2.0. size 704200 bytes: control archive=2716 bytes. 2338 bytes, 40 lines control 3513 bytes, 49 lines md5sums Package: fsa Version: 1.15.9+dfsg-6 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 3455 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.4), libstdc++6 (>= 13.1), mummer, exonerate Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: http://fsa.sourceforge.net/ Description: Fast Statistical Alignment of protein, RNA or DNA sequences FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment using only pairwise estimations of homology. This is made possible by the sequence annealing technique for constructing a multiple alignment from pairwise comparisons, developed by Ariel Schwartz. . FSA brings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such as aligning thousands of sequences or megabase-long sequences. FSA introduces several novel methods for constructing better alignments: * FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of input sequences. This "query-specific learning" alignment method makes FSA very robust: it can produce superior alignments of sets of homologous sequences which are subject to very different evolutionary constraints. * FSA is capable of aligning hundreds or even thousands of sequences using a randomized inference algorithm to reduce the computational cost of multiple alignment. This randomized inference can be over ten times faster than a direct approach with little loss of accuracy. * FSA can quickly align very long sequences using the "anchor annealing" technique for resolving anchors and projecting them with transitive anchoring. It then stitches together the alignment between the anchors using the methods described above. * The included GUI, MAD (Multiple Alignment Display), can display the intermediate alignments produced by FSA, where each character is colored according to the probability that it is correctly aligned drwxr-xr-x root/root 0 2020-11-15 16:45 ./ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/bin/ -rwxr-xr-x root/root 928608 2020-11-15 16:45 ./usr/bin/fsa -rwxr-xr-x root/root 121768 2020-11-15 16:45 ./usr/bin/fsa-translate -rwxr-xr-x root/root 302016 2020-11-15 16:45 ./usr/bin/gapcleaner -rwxr-xr-x root/root 208040 2020-11-15 16:45 ./usr/bin/isect_mercator_alignment_gff -rwxr-xr-x root/root 203848 2020-11-15 16:45 ./usr/bin/map_coords -rwxr-xr-x root/root 203944 2020-11-15 16:45 ./usr/bin/map_gff_coords -rwxr-xr-x root/root 121768 2020-11-15 16:45 ./usr/bin/percentid -rwxr-xr-x root/root 121768 2020-11-15 16:45 ./usr/bin/prot2codon -rwxr-xr-x root/root 121768 2020-11-15 16:45 ./usr/bin/slice_fasta -rwxr-xr-x root/root 154568 2020-11-15 16:45 ./usr/bin/slice_fasta_gff -rwxr-xr-x root/root 203944 2020-11-15 16:45 ./usr/bin/slice_mercator_alignment drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/bin/translate -> ../../../bin/fsa-translate drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/ lrwxrwxrwx root/root 0 2020-11-15 16:45 ./usr/lib/debian-med/share/man/man1/translate.1.gz -> ../../../../../share/man/man1/fsa-translate.1.gz drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/ -rw-r--r-- root/root 24437 2020-11-15 16:45 ./usr/share/doc/fsa/FAQ.html -rw-r--r-- root/root 5889 2014-05-16 17:25 ./usr/share/doc/fsa/README.gz -rw-r--r-- root/root 623 2020-11-15 16:45 ./usr/share/doc/fsa/changelog.Debian.gz -rw-r--r-- root/root 3603 2020-11-15 16:45 ./usr/share/doc/fsa/copyright drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/doc/fsa/examples/ -rw-r--r-- root/root 1244 2012-03-22 17:09 ./usr/share/doc/fsa/examples/README -rw-r--r-- root/root 1505 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta -rw-r--r-- root/root 33181 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.gui -rw-r--r-- root/root 393175 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.fasta.probs -rw-r--r-- root/root 1547 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.mfa -rw-r--r-- root/root 1546 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.mfa -rw-r--r-- root/root 1543 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.reference.stock -rw-r--r-- root/root 1876 2012-03-22 17:09 ./usr/share/doc/fsa/examples/RV12.BBS12030.stock -rw-r--r-- root/root 715 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta -rw-r--r-- root/root 12629 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.gui -rw-r--r-- root/root 185198 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.fasta.probs -rw-r--r-- root/root 800 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.mfa -rw-r--r-- root/root 774 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.mfa -rw-r--r-- root/root 1812 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.reference.stock -rw-r--r-- root/root 1025 2012-03-22 17:09 ./usr/share/doc/fsa/examples/U5.aln1.stock -rw-r--r-- root/root 471 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta -rw-r--r-- root/root 7534 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.gui -rw-r--r-- root/root 113663 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.fasta.probs -rw-r--r-- root/root 488 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.mfa -rw-r--r-- root/root 492 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.mfa -rw-r--r-- root/root 1185 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.reference.stock -rw-r--r-- root/root 639 2012-03-22 17:09 ./usr/share/doc/fsa/examples/tRNA.aln1.stock -rw-r--r-- root/root 266 2012-03-22 17:09 ./usr/share/doc/fsa/pretty.css drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-15 16:45 ./usr/share/man/man1/ -rw-r--r-- root/root 402 2020-11-15 16:45 ./usr/share/man/man1/fsa-translate.1.gz -rw-r--r-- root/root 393 2020-11-15 16:45 ./usr/share/man/man1/fsa.1.gz -rw-r--r-- root/root 467 2020-11-15 16:45 ./usr/share/man/man1/gapcleaner.1.gz -rw-r--r-- root/root 1077 2020-11-15 16:45 ./usr/share/man/man1/isect_mercator_alignment_gff.1.gz -rw-r--r-- root/root 695 2020-11-15 16:45 ./usr/share/man/man1/map_coords.1.gz -rw-r--r-- root/root 1074 2020-11-15 16:45 ./usr/share/man/man1/map_gff_coords.1.gz -rw-r--r-- root/root 378 2020-11-15 16:45 ./usr/share/man/man1/percentid.1.gz -rw-r--r-- root/root 411 2020-11-15 16:45 ./usr/share/man/man1/prot2codon.1.gz -rw-r--r-- root/root 443 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta.1.gz -rw-r--r-- root/root 533 2020-11-15 16:45 ./usr/share/man/man1/slice_fasta_gff.1.gz -rw-r--r-- root/root 870 2020-11-15 16:45 ./usr/share/man/man1/slice_mercator_alignment.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1331 B] Get:5 copy:/<>/apt_archive ./ Packages [1414 B] Fetched 3360 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libglib2.0-0t64 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libpsl5t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl low-memory-monitor krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libglib2.0-0t64 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libpsl5t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:riscv64 shared-mime-info t1utils ucf unzip 0 upgraded, 158 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After this operation, 74.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get:4 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:5 http://localhost:3142/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get:7 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:12 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:22 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.21-1 [63.0 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.3-1+b1 [224 kB] Get:29 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.3-1+b1 [469 kB] Get:30 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.1-2 [60.6 kB] Get:32 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.2.45-2 [120 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:34 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.2.45-2 [531 kB] Get:35 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.17.0-1 [3055 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40+b6 [67.8 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:46 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:51 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.66-1 [217 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:55 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b4 [36.1 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:65 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.38-1+b1 [129 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-1+b4 [32.8 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b4 [98.1 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:85 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:86 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:94 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:101 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:102 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:105 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:113 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:114 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:115 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:116 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15~rc1-1 [38.8 kB] Get:117 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:120 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:125 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB] Get:134 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:138 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.46-1+b1 [64.9 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:142 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b3 [13.0 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-2+b3 [20.4 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b1 [314 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.902.0+ds-2+b1 [35.5 kB] Get:153 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.11-2 [63.6 kB] Get:154 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:155 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:156 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:157 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get:158 http://localhost:3142/debian unstable/main amd64 lintian all 2.120.0 [1058 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.6 MB in 0s (123 MB/s) Selecting previously unselected package netbase. (Reading database ... 19404 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../004-libglib2.0-0t64_2.82.2-3_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.82.2-3) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../005-shared-mime-info_2.4-5+b1_amd64.deb ... Unpacking shared-mime-info (2.4-5+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../006-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../007-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../008-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../009-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../010-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../011-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../012-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../013-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../014-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../015-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../016-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... 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Preparing to unpack .../050-libhtml-parser-perl_3.83-1+b1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../051-libcgi-pm-perl_4.66-1_all.deb ... Unpacking libcgi-pm-perl (4.66-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../052-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../053-libclass-inspector-perl_1.36-3_all.deb ... Unpacking libclass-inspector-perl (1.36-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../054-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. 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Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../061-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../062-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../063-libcpanel-json-xs-perl_4.38-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.38-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../064-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../065-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... 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Setting up plzip (1.11-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libunicode-utf8-perl (0.62-2+b3) ... Setting up libmouse-perl:amd64 (2.5.11-1+b1) ... Setting up libdata-messagepack-perl (1.02-1+b4) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:amd64 (4.38-1+b1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-28) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.902.0+ds-2+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b4) ... Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.67-1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b1) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.27-1+b3) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.636-1+b3) ... Setting up libpath-tiny-perl (0.146-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.1-2) ... Setting up gpgconf (2.2.45-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libstemmer0d:amd64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.3.2-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.17.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.45-2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b3) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.46-1+b1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libglib2.0-0t64:riscv64 (2.82.2-3) ... /var/lib/dpkg/info/libglib2.0-0t64:riscv64.postinst: 17: /usr/lib/riscv64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error Setting up shared-mime-info (2.4-5+b1) ... Setting up libxmlb2:amd64 (0.3.21-1) ... Setting up libappstream5:amd64 (1.0.3-1+b1) ... Setting up appstream (1.0.3-1+b1) ... ✔ Metadata cache was updated successfully. Setting up lintian (2.120.0) ... Setting up sbuild-build-depends-lintian-dummy:riscv64 (0.invalid.0) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libc-bin (2.40-4) ... Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 128 Distribution: unstable Foreign Architectures: riscv64 Host Architecture: riscv64 Install-Time: 12 Job: fsa_1.15.9+dfsg-6 Lintian: pass Machine Architecture: amd64 Package: fsa Package-Time: 159 Source-Version: 1.15.9+dfsg-6 Space: n/a Status: successful Version: 1.15.9+dfsg-6 -------------------------------------------------------------------------------- Finished at 2024-11-29T19:55:32Z Build needed 00:02:39, no disk space