sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | garli 2.1-3 (armel) Thu, 14 Nov 2019 15:23:32 +0000 | +==============================================================================+ Package: garli Version: 2.1-3 Source Version: 2.1-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1ac29ccd-2532-48a4-b34c-63c98da763f7' with '<>' I: NOTICE: Log filtering will replace 'build/garli-EhrVP5/resolver-ABKi81' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-14-0821.52.pdiff [4748 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-14-1419.35.pdiff [25.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-14-1419.35.pdiff [25.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-14-0821.52.pdiff [24.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-14-1419.35.pdiff [24.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-14-1419.35.pdiff [24.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel Packages [7932 kB] Fetched 8205 kB in 2s (4419 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'garli' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/garli.git Please use: git clone https://salsa.debian.org/med-team/garli.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1255 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main garli 2.1-3 (dsc) [2067 B] Get:2 http://debian.oregonstate.edu/debian unstable/main garli 2.1-3 (tar) [1249 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main garli 2.1-3 (diff) [4348 B] Fetched 1255 kB in 0s (56.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/garli-EhrVP5/garli-2.1' with '<>' I: NOTICE: Log filtering will replace 'build/garli-EhrVP5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libncl-dev, libopenmpi-dev, ncl-tools, bc, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper (>= 11~), libncl-dev, libopenmpi-dev, ncl-tools, bc, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [419 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1886 B in 0s (107 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base ibverbs-providers:armel intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libevent-2.1-6:armel libevent-2.1-7:armel libevent-core-2.1-6:armel libevent-core-2.1-7:armel libevent-pthreads-2.1-6:armel libevent-pthreads-2.1-7:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libgfortran5:armel libglib2.0-0 libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libhwloc-dev:armel libhwloc-plugins:armel libhwloc5:armel libibverbs-dev:armel libibverbs1:armel libicu63 libicu63:armel libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libltdl-dev:armel libltdl7:armel liblzma5:armel libmagic-mgc libmagic1 libncl-dev:armel libncl2:armel libncurses6 libnl-3-200:armel libnl-3-dev:armel libnl-route-3-200:armel libnl-route-3-dev:armel libopenmpi-dev:armel libopenmpi3:armel libpciaccess0:armel libpipeline1 libpmix2:armel libreadline8 libsigsegv2 libssl1.1 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:armel libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db ncl-tools:armel ocl-icd-libopencl1:armel openmpi-bin:armel openmpi-common openssh-client po-debconf readline-common sensible-utils ucf zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel krb5-doc krb5-user libhwloc-contrib-plugins:armel libtool-doc:armel openmpi-doc:armel pciutils:armel libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser opencl-icd:armel gfortran:armel | fortran-compiler:armel keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base ibverbs-providers:armel intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libevent-2.1-6:armel libevent-2.1-7:armel libevent-core-2.1-6:armel libevent-core-2.1-7:armel libevent-pthreads-2.1-6:armel libevent-pthreads-2.1-7:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libgfortran5:armel libglib2.0-0 libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libhwloc-dev:armel libhwloc-plugins:armel libhwloc5:armel libibverbs-dev:armel libibverbs1:armel libicu63 libicu63:armel libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libltdl-dev:armel libltdl7:armel liblzma5:armel libmagic-mgc libmagic1 libncl-dev:armel libncl2:armel libncurses6 libnl-3-200:armel libnl-3-dev:armel libnl-route-3-200:armel libnl-route-3-dev:armel libopenmpi-dev:armel libopenmpi3:armel libpciaccess0:armel libpipeline1 libpmix2:armel libreadline8 libsigsegv2 libssl1.1 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:armel libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db ncl-tools:armel ocl-icd-libopencl1:armel openmpi-bin:armel openmpi-common openssh-client po-debconf readline-common sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 81.1 MB of archives. After this operation, 316 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-1 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-19 [194 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191025-1 [95.1 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 openssh-client amd64 1:8.1p1-1 [830 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 bc amd64 1.07.1-2+b2 [109 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.33.1-2 [2721 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-19cross1 [194 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [6812 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-19cross1 [190 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-1cross7 [1139 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-19cross1 [39.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-19cross1 [74.8 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-19cross1 [8944 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-19cross1 [340 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-19cross1 [377 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-19cross1 [110 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-19cross1 [644 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [7157 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.2.9-2cross7 [1312 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-1cross7 [2155 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-19cross1 [1709 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [7390 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.1 [173 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.2-1 [23.6 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.2-1 [14.6 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-2 [145 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.2-3 [1318 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.1 [997 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-19 [38.9 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-3 [2348 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libnl-3-200 armel 3.4.0-1+b1 [55.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libnl-route-3-200 armel 3.4.0-1+b1 [134 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libibverbs1 armel 26.0-2 [47.0 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel ibverbs-providers armel 26.0-2 [24.6 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-19 [347 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-19 [9092 B] Get:94 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.3.9-2 [986 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-3 [2195 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libevent-2.1-6 armel 2.1.8-stable-4 [159 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libevent-2.1-7 armel 2.1.11-stable-1 [166 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libevent-core-2.1-6 armel 2.1.8-stable-4 [118 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libevent-core-2.1-7 armel 2.1.11-stable-1 [125 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libevent-pthreads-2.1-6 armel 2.1.8-stable-4 [47.6 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libevent-pthreads-2.1-7 armel 2.1.11-stable-1 [54.7 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-19 [77.1 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-19 [415 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-19 [111 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-19 [643 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libgfortran5 armel 9.2.1-19 [245 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libltdl7 armel 2.4.6-11 [387 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libhwloc5 armel 1.11.13-1 [88.6 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libltdl-dev armel 2.4.6-11 [160 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libhwloc-dev armel 1.11.13-1 [153 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1+b1 [84.7 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libpciaccess0 armel 0.14-1 [50.9 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libicu63 armel 63.2-2 [7979 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel liblzma5 armel 5.2.4-1+b1 [144 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armel libxml2 armel 2.9.4+dfsg1-7+b3 [572 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armel ocl-icd-libopencl1 armel 2.2.12-2 [36.3 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel libhwloc-plugins armel 1.11.13-1 [17.3 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armel libnl-3-dev armel 3.4.0-1+b1 [97.1 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armel libnl-route-3-dev armel 3.4.0-1+b1 [158 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armel libibverbs-dev armel 26.0-2 [167 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armel libncl2 armel 2.1.21+git20190531.feceb81-1 [321 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armel libncl-dev armel 2.1.21+git20190531.feceb81-1 [508 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armel libpmix2 armel 3.1.4-1+b1 [375 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armel libopenmpi3 armel 3.1.3-11 [1828 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armel openmpi-bin armel 3.1.3-11 [200 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armel libopenmpi-dev armel 3.1.3-11 [963 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-19 [1739 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armel ncl-tools armel 2.1.21+git20190531.feceb81-1 [128 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.1 MB in 3s (26.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14996 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-1_amd64.deb ... Unpacking man-db (2.9.0-1) ... 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Selecting previously unselected package dpkg-cross. Preparing to unpack .../067-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../068-crossbuild-essential-armel_12.8_all.deb ... Unpacking crossbuild-essential-armel (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../069-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../070-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../071-libdebhelper-perl_12.7.1_all.deb ... Unpacking libdebhelper-perl (12.7.1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../072-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... 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Unpacking libglib2.0-0:amd64 (2.62.2-3) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../079-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../080-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../081-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../082-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../083-debhelper_12.7.1_all.deb ... Unpacking debhelper (12.7.1) ... Selecting previously unselected package libgcc1:armel. Preparing to unpack .../084-libgcc1_1%3a9.2.1-19_armel.deb ... Unpacking libgcc1:armel (1:9.2.1-19) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../085-libc6_2.29-3_armel.deb ... Unpacking libc6:armel (2.29-3) ... Selecting previously unselected package libnl-3-200:armel. Preparing to unpack .../086-libnl-3-200_3.4.0-1+b1_armel.deb ... Unpacking libnl-3-200:armel (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:armel. Preparing to unpack .../087-libnl-route-3-200_3.4.0-1+b1_armel.deb ... Unpacking libnl-route-3-200:armel (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:armel. Preparing to unpack .../088-libibverbs1_26.0-2_armel.deb ... Unpacking libibverbs1:armel (26.0-2) ... Selecting previously unselected package ibverbs-providers:armel. Preparing to unpack .../089-ibverbs-providers_26.0-2_armel.deb ... Unpacking ibverbs-providers:armel (26.0-2) ... Selecting previously unselected package libasan5:armel. Preparing to unpack .../090-libasan5_9.2.1-19_armel.deb ... Unpacking libasan5:armel (9.2.1-19) ... 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Preparing to unpack .../113-libxml2_2.9.4+dfsg1-7+b3_armel.deb ... Unpacking libxml2:armel (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package ocl-icd-libopencl1:armel. Preparing to unpack .../114-ocl-icd-libopencl1_2.2.12-2_armel.deb ... Unpacking ocl-icd-libopencl1:armel (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:armel. Preparing to unpack .../115-libhwloc-plugins_1.11.13-1_armel.deb ... Unpacking libhwloc-plugins:armel (1.11.13-1) ... Selecting previously unselected package libnl-3-dev:armel. Preparing to unpack .../116-libnl-3-dev_3.4.0-1+b1_armel.deb ... Unpacking libnl-3-dev:armel (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-dev:armel. Preparing to unpack .../117-libnl-route-3-dev_3.4.0-1+b1_armel.deb ... Unpacking libnl-route-3-dev:armel (3.4.0-1+b1) ... Selecting previously unselected package libibverbs-dev:armel. Preparing to unpack .../118-libibverbs-dev_26.0-2_armel.deb ... Unpacking libibverbs-dev:armel (26.0-2) ... Selecting previously unselected package libncl2:armel. Preparing to unpack .../119-libncl2_2.1.21+git20190531.feceb81-1_armel.deb ... Unpacking libncl2:armel (2.1.21+git20190531.feceb81-1) ... Selecting previously unselected package libncl-dev:armel. Preparing to unpack .../120-libncl-dev_2.1.21+git20190531.feceb81-1_armel.deb ... Unpacking libncl-dev:armel (2.1.21+git20190531.feceb81-1) ... Selecting previously unselected package libpmix2:armel. Preparing to unpack .../121-libpmix2_3.1.4-1+b1_armel.deb ... Unpacking libpmix2:armel (3.1.4-1+b1) ... Selecting previously unselected package libopenmpi3:armel. Preparing to unpack .../122-libopenmpi3_3.1.3-11_armel.deb ... Unpacking libopenmpi3:armel (3.1.3-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../123-openmpi-common_3.1.3-11_all.deb ... Unpacking openmpi-common (3.1.3-11) ... Selecting previously unselected package openmpi-bin:armel. Preparing to unpack .../124-openmpi-bin_3.1.3-11_armel.deb ... Unpacking openmpi-bin:armel (3.1.3-11) ... Selecting previously unselected package libopenmpi-dev:armel. Preparing to unpack .../125-libopenmpi-dev_3.1.3-11_armel.deb ... Unpacking libopenmpi-dev:armel (3.1.3-11) ... Selecting previously unselected package libstdc++-9-dev:armel. Preparing to unpack .../126-libstdc++-9-dev_9.2.1-19_armel.deb ... Unpacking libstdc++-9-dev:armel (9.2.1-19) ... Selecting previously unselected package ncl-tools:armel. Preparing to unpack .../127-ncl-tools_2.1.21+git20190531.feceb81-1_armel.deb ... Unpacking ncl-tools:armel (2.1.21+git20190531.feceb81-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../128-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up binutils-arm-linux-gnueabi (2.33.1-2) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.2-3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libdebhelper-perl (12.7.1) ... Setting up libmagic1:amd64 (1:5.37-6) ... Setting up linux-libc-dev:armel (5.3.9-2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-6) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up linux-libc-dev-armel-cross (5.2.9-2cross7) ... Setting up gcc-9-arm-linux-gnueabi-base:amd64 (9.2.1-19cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up cpp-9-arm-linux-gnueabi (9.2.1-19cross1) ... Setting up autopoint (0.19.8.1-9) ... Setting up gcc-9-cross-base (9.2.1-19cross1) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libc6-armel-cross (2.29-1cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up openmpi-common (3.1.3-11) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libc6-dev-armel-cross (2.29-1cross7) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armel (9.2.1-19) ... Setting up libfile-stripnondeterminism-perl (1.6.2-1) ... Setting up libgomp1-armel-cross (9.2.1-19cross1) ... Setting up libtool (2.4.6-11) ... Setting up libedit2:amd64 (3.1-20191025-1) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up bc (1.07.1-2+b2) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armel-cross (9.2.1-19cross1) ... Setting up libgcc1-armel-cross (1:9.2.1-19cross1) ... Setting up libasan5-armel-cross (9.2.1-19cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.2-1) ... Setting up dwz (0.13-2) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up openssh-client (1:8.1p1-1) ... Setting up libstdc++6-armel-cross (9.2.1-19cross1) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libubsan1-armel-cross (9.2.1-19cross1) ... Setting up libgcc-9-dev-armel-cross (9.2.1-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-armel-cross (9.2.1-19cross1) ... Setting up gcc-9-arm-linux-gnueabi (9.2.1-19cross1) ... Setting up g++-9-arm-linux-gnueabi (9.2.1-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libgcc1:armel (1:9.2.1-19) ... Setting up dh-autoreconf (19) ... Setting up libc6:armel (2.29-3) ... Setting up ocl-icd-libopencl1:armel (2.2.12-2) ... Setting up libnl-3-200:armel (3.4.0-1+b1) ... Setting up libc6-dev:armel (2.29-3) ... Setting up libstdc++6:armel (9.2.1-19) ... Setting up liblzma5:armel (5.2.4-1+b1) ... Setting up debhelper (12.7.1) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:armel (9.2.1-19) ... Setting up libncl2:armel (2.1.21+git20190531.feceb81-1) ... Setting up libicu63:armel (63.2-2) ... Setting up libncl-dev:armel (2.1.21+git20190531.feceb81-1) ... Setting up libnl-route-3-200:armel (3.4.0-1+b1) ... Setting up libasan5:armel (9.2.1-19) ... Setting up libevent-core-2.1-7:armel (2.1.11-stable-1) ... Setting up libatomic1:armel (9.2.1-19) ... Setting up libevent-2.1-7:armel (2.1.11-stable-1) ... Setting up libltdl7:armel (2.4.6-11) ... Setting up libevent-core-2.1-6:armel (2.1.8-stable-4) ... Setting up libgfortran5:armel (9.2.1-19) ... Setting up libevent-2.1-6:armel (2.1.8-stable-4) ... Setting up libubsan1:armel (9.2.1-19) ... Setting up libnl-3-dev:armel (3.4.0-1+b1) ... Setting up libxml2:armel (2.9.4+dfsg1-7+b3) ... Setting up libevent-pthreads-2.1-7:armel (2.1.11-stable-1) ... Setting up libevent-pthreads-2.1-6:armel (2.1.8-stable-4) ... Setting up libpciaccess0:armel (0.14-1) ... Setting up libibverbs1:armel (26.0-2) ... Setting up ibverbs-providers:armel (26.0-2) ... Setting up libhwloc5:armel (1.11.13-1) ... Setting up ncl-tools:armel (2.1.21+git20190531.feceb81-1) ... Setting up libhwloc-plugins:armel (1.11.13-1) ... Setting up libgcc-9-dev:armel (9.2.1-19) ... Setting up libnl-route-3-dev:armel (3.4.0-1+b1) ... Setting up libltdl-dev:armel (2.4.6-11) ... Setting up libhwloc-dev:armel (1.11.13-1) ... Setting up libstdc++-9-dev:armel (9.2.1-19) ... Setting up libpmix2:armel (3.1.4-1+b1) ... Setting up libopenmpi3:armel (3.1.3-11) ... Setting up libibverbs-dev:armel (26.0-2) ... Setting up openmpi-bin:armel (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:armel (3.1.3-11) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/openmpi/include to provide /usr/include/arm-linux-gnueabi/mpi (mpi-arm-linux-gnueabi) in auto mode Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.29-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-2 dpkg-dev_1.19.7 g++-8_8.3.0-24 g++-9_9.2.1-19 gcc-8_8.3.0-24 gcc-9_9.2.1-19 libc6-dev_2.29-3 libstdc++-8-dev_8.3.0-24 libstdc++-9-dev_9.2.1-19 libstdc++-9-dev-armel-cross_9.2.1-19cross1 libstdc++6_9.2.1-19 libstdc++6-armel-cross_9.2.1-19cross1 linux-libc-dev_5.3.9-2 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-5 bc_1.07.1-2+b2 binutils_2.33.1-2 binutils-arm-linux-gnueabi_2.33.1-2 binutils-common_2.33.1-2 binutils-x86-64-linux-gnu_2.33.1-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-24 cpp-9_9.2.1-19 cpp-9-arm-linux-gnueabi_9.2.1-19cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-2 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-24 g++-9_9.2.1-19 g++-9-arm-linux-gnueabi_9.2.1-19cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-24 gcc-8-base_8.3.0-24 gcc-9_9.2.1-19 gcc-9-arm-linux-gnueabi_9.2.1-19cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-19cross1 gcc-9-base_9.2.1-19 gcc-9-cross-base_9.2.1-19cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.23 ibverbs-providers_26.0-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-19 libasan5-armel-cross_9.2.1-19cross1 libatomic1_9.2.1-19 libatomic1-armel-cross_9.2.1-19cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-3 libc-dev-bin_2.29-3 libc6_2.29-3 libc6-armel-cross_2.29-1cross7 libc6-dev_2.29-3 libc6-dev-armel-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1 libcc1-0_9.2.1-19 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libedit2_3.1-20191025-1 libelf1_0.176-1.1 libevent-2.1-6_2.1.8-stable-4 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-6_2.1.8-stable-4 libevent-core-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-7_2.1.11-stable-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-24 libgcc-9-dev_9.2.1-19 libgcc-9-dev-armel-cross_9.2.1-19cross1 libgcc1_1:9.2.1-19 libgcc1-armel-cross_1:9.2.1-19cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-19 libglib2.0-0_2.62.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-4 libgomp1_9.2.1-19 libgomp1-armel-cross_9.2.1-19cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_1.11.13-1 libhwloc-plugins_1.11.13-1 libhwloc5_1.11.13-1 libibverbs-dev_26.0-2 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libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpmix2_3.1.4-1+b1 libquadmath0_9.2.1-19 libreadline8_8.0-3 libseccomp2_2.4.2-1 libselinux1_2.9-3 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-24 libstdc++-9-dev_9.2.1-19 libstdc++-9-dev-armel-cross_9.2.1-19cross1 libstdc++6_9.2.1-19 libstdc++6-armel-cross_9.2.1-19cross1 libsub-override-perl_0.09-2 libsystemd0_243-5 libtasn1-6_4.14-3 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-19 libubsan1_9.2.1-19 libubsan1-armel-cross_9.2.1-19cross1 libuchardet0_0.0.6-3 libudev1_243-5 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.9-2 linux-libc-dev-armel-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncl-tools_2.1.21+git20190531.feceb81-1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_3.1.3-11 openmpi-common_3.1.3-11 openssh-client_1:8.1p1-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 readline-common_8.0-3 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: garli Binary: garli, garli-mpi, garli-examples Architecture: any all Version: 2.1-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/Ashod/garli Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/garli Vcs-Git: https://salsa.debian.org/med-team/garli.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libncl-dev, libopenmpi-dev, ncl-tools, bc Package-List: garli deb science optional arch=any garli-examples deb science optional arch=all garli-mpi deb science optional arch=any Checksums-Sha1: a7a5cb81f92ed19672324b5aacf8c7da1f6a2df3 1248730 garli_2.1.orig.tar.gz e2c3f9c23d797fb791c569b2ed6e978b173936dc 4348 garli_2.1-3.debian.tar.xz Checksums-Sha256: 00aa31af5d8ecc2cb9bd276ce93b6580ae6cff93f4f5e1145d95d5fe6359e1b6 1248730 garli_2.1.orig.tar.gz 6bcd70331a3ebf58d567a7db2fe38a62a8c943be0806c1e98ebe64f78cb71b23 4348 garli_2.1-3.debian.tar.xz Files: 83d6720df816365182291306383d056c 1248730 garli_2.1.orig.tar.gz 6e3ee51d0616bfa6479258420a00e7bb 4348 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'/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Sep 4 13:22:38 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./garli_2.1-3.dsc dpkg-source: info: extracting garli in /<> dpkg-source: info: unpacking garli_2.1.orig.tar.gz dpkg-source: info: unpacking garli_2.1-3.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-1ac29ccd-2532-48a4-b34c-63c98da763f7 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package garli dpkg-buildpackage: info: source version 2.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory configure.ac:355: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... configure.ac:355: the top level configure.ac:355: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... configure.ac:355: the top level configure.ac:355: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... configure.ac:355: the top level configure.ac:355: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... configure.ac:355: the top level configure.ac:355: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... configure.ac:355: the top level configure.ac:355: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2601: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2617: AC_COMPILE_IFELSE is expanded from... configure.ac:355: the top level configure.ac:25: warning: support for distribution archives compressed with legacy program 'compress' is deprecated. configure.ac:25: It will be removed in Automake 2.0 debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # First build MPI version of Garli dh_auto_configure -- --with-ncl=/usr --enable-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --libexecdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --with-ncl=/usr --enable-mpi configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armel checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking target system type... arm-unknown-linux-gnueabi checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1003' is supported by ustar format... yes checking whether GID '1003' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabi-gcc... none checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++ checking whether we are using the GNU C++ compiler... yes checking whether arm-linux-gnueabi-g++ accepts -g... yes checking dependency style of arm-linux-gnueabi-g++... none checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for error_at_line... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for working strtod... no checking for pow... no checking for pow in -lm... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for pow... (cached) no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strtol... yes configure: *** NOTE: compiling MPI run distributing version checking for mpic++... mpic++ checking for MPI_Init... no checking for MPI_Init in -lmpi... no checking for MPI_Init in -lmpich... no configure: error: Problem with link flags. Most likely a library cannot be found. Check that any libraries listed below can be found in a system default location or a location specified in LDFLAGS with a -L. LIBS= -lncl LDFLAGS=-Wl,-z,relro -Wl,-z,now -L/usr/lib tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Garli configure 2.1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/arm-linux-gnueabi --libexecdir=${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --with-ncl=/usr --enable-mpi ## --------- ## ## Platform. ## ## --------- ## hostname = gcc131.bak.milne.osuosl.org uname -m = x86_64 uname -r = 4.9.0-8-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.9.144-3.1 (2019-02-19) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2334: loading site script /etc/dpkg-cross/cross-config.armel | # read in package-specific and global values. | . `dirname $ac_site_file`/cross-config.cache | # now ensure the real architecture-dependent values take priority | ac_cv_c_bigendian=no | ac_cv_c_char_unsigned=yes | ac_cv_sizeof_long_long=8 | ac_cv_sizeof_unsigned_long_long=8 | ac_cv_sizeof_long=4 | ac_cv_sizeof_unsigned_long=4 | ac_cv_sizeof_int=4 | ac_cv_sizeof_unsigned_int=4 | ac_cv_sizeof_short=2 | ac_cv_sizeof_unsigned_short=2 | ac_cv_sizeof_char=1 | ac_cv_sizeof_unsigned_char=1 | ac_cv_sizeof_signed_char=1 | ac_cv_sizeof_float=4 | ac_cv_sizeof_double=8 | ac_cv_sizeof_long_double=8 | ac_cv_sizeof_void_p=4 | ac_cv_sizeof_char_p=4 | | path=`dirname $ac_site_file` | # now allow package-specific architecture-independent values to be set | if [ -d $path/cross-config.d/armel/ ]; then | for file in `ls $path/cross-config.d/armel/`; do | if [ "$file" = "$PACKAGE" -o "$file" = "$PACKAGE_NAME" ]; then | [ -d $path/cross-config.d/armel/$file ] || . $path/cross-config.d/armel/$file | HAVE_PKG_CACHE=1 | fi | done | fi | | if [ -z "$HAVE_PKG_CACHE" ]; then | # orbit2 - only needed until liborbit-dev provides these directly | # using the mechanism above. | if [ "$PACKAGE" = "orbit2" -o "$PACKAGE_NAME" = "ORBit2" ]; then | ac_cv_alignof_CORBA_octet=1 | ac_cv_alignof_CORBA_boolean=1 | ac_cv_alignof_CORBA_char=1 | ac_cv_alignof_CORBA_wchar=2 | ac_cv_alignof_CORBA_short=2 | ac_cv_alignof_CORBA_long=4 | ac_cv_alignof_CORBA_long_long=8 | ac_cv_alignof_CORBA_float=4 | ac_cv_alignof_CORBA_double=4 | ac_cv_alignof_CORBA_long_double=8 | ac_cv_alignof_CORBA_struct=1 | ac_cv_alignof_CORBA_pointer=4 | fi | fi configure:2474: checking build system type configure:2488: result: x86_64-pc-linux-gnu configure:2508: checking host system type configure:2521: result: arm-unknown-linux-gnueabi configure:2541: checking target system type configure:2554: result: arm-unknown-linux-gnueabi configure:2603: checking for a BSD-compatible install configure:2671: result: /usr/bin/install -c configure:2682: checking whether build environment is sane configure:2737: result: yes configure:2794: checking for arm-linux-gnueabi-strip configure:2810: found /usr/bin/arm-linux-gnueabi-strip configure:2821: result: arm-linux-gnueabi-strip configure:2886: checking for a thread-safe mkdir -p configure:2925: result: /bin/mkdir -p configure:2932: checking for gawk configure:2962: result: no configure:2932: checking for mawk configure:2948: found /usr/bin/mawk configure:2959: result: mawk configure:2970: checking whether make sets $(MAKE) configure:2992: result: yes configure:3021: checking whether make supports nested variables configure:3038: result: yes configure:3127: checking whether UID '1003' is supported by ustar format configure:3130: result: yes configure:3137: checking whether GID '1003' is supported by ustar format configure:3140: result: yes configure:3148: checking how to create a ustar tar archive configure:3159: tar --version tar (GNU tar) 1.30 Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later . This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by John Gilmore and Jay Fenlason. configure:3162: $? = 0 configure:3202: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar configure:3205: $? = 0 configure:3209: tar -xf - &5 arm-linux-gnueabi-gcc (Debian 9.2.1-19) 9.2.1 20191109 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3617: $? = 0 configure:3606: arm-linux-gnueabi-gcc -v >&5 Using built-in specs. COLLECT_GCC=arm-linux-gnueabi-gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc-cross/arm-linux-gnueabi/9/lto-wrapper Target: arm-linux-gnueabi Configured with: ../src/configure -v --with-pkgversion='Debian 9.2.1-19' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --without-target-system-zlib --enable-libpth-m2 --enable-multiarch --disable-sjlj-exceptions --with-arch=armv5te --with-float=soft --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabi --program-prefix=arm-linux-gnueabi- --includedir=/usr/arm-linux-gnueabi/include Thread model: posix gcc version 9.2.1 20191109 (Debian 9.2.1-19) configure:3617: $? = 0 configure:3606: arm-linux-gnueabi-gcc -V >&5 arm-linux-gnueabi-gcc: error: unrecognized command line option '-V' arm-linux-gnueabi-gcc: fatal error: no input files compilation terminated. configure:3617: $? = 1 configure:3606: arm-linux-gnueabi-gcc -qversion >&5 arm-linux-gnueabi-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? arm-linux-gnueabi-gcc: fatal error: no input files compilation terminated. configure:3617: $? = 1 configure:3637: checking whether the C compiler works configure:3659: arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:3663: $? = 0 configure:3711: result: yes configure:3714: checking for C compiler default output file name configure:3716: result: a.out configure:3722: checking for suffix of executables configure:3729: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:3733: $? = 0 configure:3755: result: configure:3777: checking whether we are cross compiling configure:3815: result: yes configure:3820: checking for suffix of object files configure:3842: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3846: $? = 0 configure:3867: result: o configure:3871: checking whether we are using the GNU C compiler configure:3890: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3890: $? = 0 configure:3899: result: yes configure:3908: checking whether arm-linux-gnueabi-gcc accepts -g configure:3928: arm-linux-gnueabi-gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3928: $? = 0 configure:3969: result: yes configure:3986: checking for arm-linux-gnueabi-gcc option to accept ISO C89 configure:4049: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4049: $? = 0 configure:4062: result: none needed configure:4087: checking whether arm-linux-gnueabi-gcc understands -c and -o together configure:4109: arm-linux-gnueabi-gcc -c conftest.c -o conftest2.o configure:4112: $? = 0 configure:4109: arm-linux-gnueabi-gcc -c conftest.c -o conftest2.o configure:4112: $? = 0 configure:4124: result: yes configure:4144: checking whether make supports the include directive configure:4159: make -f confmf.GNU && cat confinc.out make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' this is the am__doit target configure:4162: $? = 0 configure:4181: result: yes (GNU style) configure:4206: checking dependency style of arm-linux-gnueabi-gcc configure:4317: result: none configure:4337: checking how to run the C preprocessor configure:4368: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:4368: $? = 0 configure:4382: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory 11 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:4382: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | /* end confdefs.h. */ | #include configure:4407: result: arm-linux-gnueabi-gcc -E configure:4427: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:4427: $? = 0 configure:4441: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory 11 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:4441: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | /* end confdefs.h. */ | #include configure:4484: checking for arm-linux-gnueabi-g++ configure:4500: found /usr/bin/arm-linux-gnueabi-g++ configure:4511: result: arm-linux-gnueabi-g++ configure:4582: checking for C++ compiler version configure:4591: arm-linux-gnueabi-g++ --version >&5 arm-linux-gnueabi-g++ (Debian 9.2.1-19) 9.2.1 20191109 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4602: $? = 0 configure:4591: arm-linux-gnueabi-g++ -v >&5 Using built-in specs. COLLECT_GCC=arm-linux-gnueabi-g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc-cross/arm-linux-gnueabi/9/lto-wrapper Target: arm-linux-gnueabi Configured with: ../src/configure -v --with-pkgversion='Debian 9.2.1-19' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --without-target-system-zlib --enable-libpth-m2 --enable-multiarch --disable-sjlj-exceptions --with-arch=armv5te --with-float=soft --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabi --program-prefix=arm-linux-gnueabi- --includedir=/usr/arm-linux-gnueabi/include Thread model: posix gcc version 9.2.1 20191109 (Debian 9.2.1-19) configure:4602: $? = 0 configure:4591: arm-linux-gnueabi-g++ -V >&5 arm-linux-gnueabi-g++: error: unrecognized command line option '-V' arm-linux-gnueabi-g++: fatal error: no input files compilation terminated. configure:4602: $? = 1 configure:4591: arm-linux-gnueabi-g++ -qversion >&5 arm-linux-gnueabi-g++: error: unrecognized command line option '-qversion'; did you mean '--version'? arm-linux-gnueabi-g++: fatal error: no input files compilation terminated. configure:4602: $? = 1 configure:4606: checking whether we are using the GNU C++ compiler configure:4625: arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:4625: $? = 0 configure:4634: result: yes configure:4643: checking whether arm-linux-gnueabi-g++ accepts -g configure:4663: arm-linux-gnueabi-g++ -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:4663: $? = 0 configure:4704: result: yes configure:4729: checking dependency style of arm-linux-gnueabi-g++ configure:4840: result: none configure:4863: checking for arm-linux-gnueabi-ranlib configure:4879: found /usr/bin/arm-linux-gnueabi-ranlib configure:4890: result: arm-linux-gnueabi-ranlib configure:4962: checking for grep that handles long lines and -e configure:5020: result: /bin/grep configure:5025: checking for egrep configure:5087: result: /bin/grep -E configure:5092: checking for ANSI C header files configure:5112: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5112: $? = 0 configure:5196: result: yes configure:5209: checking for sys/types.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for sys/stat.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for stdlib.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for string.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for memory.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for strings.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for inttypes.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for stdint.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5209: checking for unistd.h configure:5209: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5209: $? = 0 configure:5209: result: yes configure:5224: checking float.h usability configure:5224: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking float.h presence configure:5224: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking for float.h configure:5224: result: yes configure:5224: checking malloc.h usability configure:5224: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking malloc.h presence configure:5224: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking for malloc.h configure:5224: result: yes configure:5224: checking stddef.h usability configure:5224: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking stddef.h presence configure:5224: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking for stddef.h configure:5224: result: yes configure:5224: checking for stdlib.h configure:5224: result: yes configure:5224: checking sys/time.h usability configure:5224: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking sys/time.h presence configure:5224: arm-linux-gnueabi-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5224: $? = 0 configure:5224: result: yes configure:5224: checking for sys/time.h configure:5224: result: yes configure:5236: checking for stdbool.h that conforms to C99 configure:5303: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5303: $? = 0 configure:5310: result: yes configure:5312: checking for _Bool configure:5312: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5312: $? = 0 configure:5312: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:62:20: error: expected expression before ')' token 62 | if (sizeof ((_Bool))) | ^ configure:5312: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:5312: result: yes configure:5329: checking for an ANSI C-conforming const configure:5395: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5395: $? = 0 configure:5402: result: yes configure:5410: checking for inline configure:5426: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5426: $? = 0 configure:5434: result: inline configure:5452: checking for size_t configure:5452: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5452: $? = 0 configure:5452: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:64:21: error: expected expression before ')' token 64 | if (sizeof ((size_t))) | ^ configure:5452: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:5452: result: yes configure:5463: checking whether struct tm is in sys/time.h or time.h configure:5483: arm-linux-gnueabi-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5483: $? = 0 configure:5490: result: time.h configure:5500: checking for error_at_line configure:5516: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:5516: $? = 0 configure:5524: result: yes configure:5537: checking for stdlib.h configure:5537: result: yes configure:5547: checking for GNU libc compatible malloc configure:5581: result: yes configure:5602: checking for working strtod configure:5653: result: no configure:5662: checking for pow configure:5662: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:53:6: warning: conflicting types for built-in function 'pow'; expected 'double(double, double)' [-Wbuiltin-declaration-mismatch] 53 | char pow (); | ^~~ conftest.c:41:1: note: 'pow' is declared in header '' 40 | # include 41 | #else /usr/lib/gcc-cross/arm-linux-gnueabi/9/../../../../arm-linux-gnueabi/bin/ld: /tmp/cc7lnjrB.o: in function `main': ./conftest.c:64: undefined reference to `pow' collect2: error: ld returned 1 exit status configure:5662: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | /* end confdefs.h. */ | /* Define pow to an innocuous variant, in case declares pow. | For example, HP-UX 11i declares gettimeofday. */ | #define pow innocuous_pow | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pow (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pow | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pow (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pow || defined __stub___pow | choke me | #endif | | int | main () | { | return pow (); | ; | return 0; | } configure:5662: result: no configure:5668: checking for pow in -lm configure:5693: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lm >&5 conftest.c:37:6: warning: conflicting types for built-in function 'pow'; expected 'double(double, double)' [-Wbuiltin-declaration-mismatch] 37 | char pow (); | ^~~ conftest.c:1:1: note: 'pow' is declared in header '' 1 | /* confdefs.h */ configure:5693: $? = 0 configure:5702: result: yes configure:5718: checking for floor configure:5718: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:53:6: warning: conflicting types for built-in function 'floor'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 53 | char floor (); | ^~~~~ conftest.c:41:1: note: 'floor' is declared in header '' 40 | # include 41 | #else /usr/lib/gcc-cross/arm-linux-gnueabi/9/../../../../arm-linux-gnueabi/bin/ld: /tmp/cc9oXS2T.o: in function `main': ./conftest.c:64: undefined reference to `floor' collect2: error: ld returned 1 exit status configure:5718: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | /* end confdefs.h. */ | /* Define floor to an innocuous variant, in case declares floor. | For example, HP-UX 11i declares gettimeofday. */ | #define floor innocuous_floor | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char floor (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef floor | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char floor (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_floor || defined __stub___floor | choke me | #endif | | int | main () | { | return floor (); | ; | return 0; | } configure:5718: result: no configure:5718: checking for memmove configure:5718: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:53:6: warning: conflicting types for built-in function 'memmove'; expected 'void *(void *, const void *, unsigned int)' [-Wbuiltin-declaration-mismatch] 53 | char memmove (); | ^~~~~~~ conftest.c:41:1: note: 'memmove' is declared in header '' 40 | # include 41 | #else configure:5718: $? = 0 configure:5718: result: yes configure:5718: checking for memset configure:5718: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:54:6: warning: conflicting types for built-in function 'memset'; expected 'void *(void *, int, unsigned int)' [-Wbuiltin-declaration-mismatch] 54 | char memset (); | ^~~~~~ conftest.c:42:1: note: 'memset' is declared in header '' 41 | # include 42 | #else configure:5718: $? = 0 configure:5718: result: yes configure:5718: checking for pow configure:5718: result: no configure:5718: checking for sqrt configure:5718: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:55:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 55 | char sqrt (); | ^~~~ conftest.c:43:1: note: 'sqrt' is declared in header '' 42 | # include 43 | #else /usr/lib/gcc-cross/arm-linux-gnueabi/9/../../../../arm-linux-gnueabi/bin/ld: /tmp/cc9DYH2i.o: in function `main': ./conftest.c:66: undefined reference to `sqrt' collect2: error: ld returned 1 exit status configure:5718: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | /* end confdefs.h. */ | /* Define sqrt to an innocuous variant, in case declares sqrt. | For example, HP-UX 11i declares gettimeofday. */ | #define sqrt innocuous_sqrt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sqrt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sqrt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sqrt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sqrt || defined __stub___sqrt | choke me | #endif | | int | main () | { | return sqrt (); | ; | return 0; | } configure:5718: result: no configure:5718: checking for strchr configure:5718: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:55:6: warning: conflicting types for built-in function 'strchr'; expected 'char *(const char *, int)' [-Wbuiltin-declaration-mismatch] 55 | char strchr (); | ^~~~~~ conftest.c:43:1: note: 'strchr' is declared in header '' 42 | # include 43 | #else configure:5718: $? = 0 configure:5718: result: yes configure:5718: checking for strdup configure:5718: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:56:6: warning: conflicting types for built-in function 'strdup'; expected 'char *(const char *)' [-Wbuiltin-declaration-mismatch] 56 | char strdup (); | ^~~~~~ configure:5718: $? = 0 configure:5718: result: yes configure:5718: checking for strtol configure:5718: arm-linux-gnueabi-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:5718: $? = 0 configure:5718: result: yes configure:5836: *** NOTE: compiling MPI run distributing version configure:5968: checking for mpic++ configure:5984: found /usr/bin/mpic++ configure:5995: result: mpic++ configure:6013: checking for MPI_Init configure:6013: mpic++ -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.cpp >&5 ./configure: line 1980: /usr/bin/mpic++: cannot execute binary file: Exec format error configure:6013: $? = 126 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | /* Define MPI_Init to an innocuous variant, in case declares MPI_Init. | For example, HP-UX 11i declares gettimeofday. */ | #define MPI_Init innocuous_MPI_Init | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char MPI_Init (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef MPI_Init | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char MPI_Init (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_MPI_Init || defined __stub___MPI_Init | choke me | #endif | | int | main () | { | return MPI_Init (); | ; | return 0; | } configure:6013: result: no configure:6021: checking for MPI_Init in -lmpi configure:6046: mpic++ -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.cpp -lmpi >&5 ./configure: line 1980: /usr/bin/mpic++: cannot execute binary file: Exec format error configure:6046: $? = 126 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char MPI_Init (); | int | main () | { | return MPI_Init (); | ; | return 0; | } configure:6055: result: no configure:6063: checking for MPI_Init in -lmpich configure:6088: mpic++ -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.cpp -lmpich >&5 ./configure: line 1980: /usr/bin/mpic++: cannot execute binary file: Exec format error configure:6088: $? = 126 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char MPI_Init (); | int | main () | { | return MPI_Init (); | ; | return 0; | } configure:6097: result: no configure:6268: mpic++ -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -DSUBROUTINE_GARLI -O3 -ffast-math -funroll-loops -fstrict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/ncl -DIGNORE_NXS_ASSERT -Wl,-z,relro -Wl,-z,now -L/usr/lib conftest.cpp -lncl >&5 ./configure: line 1980: /usr/bin/mpic++: cannot execute binary file: Exec format error configure:6268: $? = 126 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | | int | main () | { | int foo=2; | ; | return 0; | } configure:6271: error: Problem with link flags. Most likely a library cannot be found. Check that any libraries listed below can be found in a system default location or a location specified in LDFLAGS with a -L. LIBS= -lncl LDFLAGS=-Wl,-z,relro -Wl,-z,now -L/usr/lib ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_bigendian=no ac_cv_c_char_unsigned=yes ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,-z,now' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPICXX_set= ac_cv_env_MPICXX_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=arm-linux-gnueabi ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_MPI_Init=no ac_cv_func_floor=no ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memmove=yes ac_cv_func_memset=yes ac_cv_func_pow=no ac_cv_func_realloc_0_nonnull=yes ac_cv_func_setpgrp_void=yes ac_cv_func_sqrt=no ac_cv_func_strchr=yes ac_cv_func_strdup=yes ac_cv_func_strtod=no ac_cv_func_strtol=yes ac_cv_header_float_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=arm-unknown-linux-gnueabi ac_cv_lib_error_at_line=yes ac_cv_lib_m_pow=yes ac_cv_lib_mpi_MPI_Init=no ac_cv_lib_mpich_MPI_Init=no ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=mawk ac_cv_prog_CC=arm-linux-gnueabi-gcc ac_cv_prog_CPP='arm-linux-gnueabi-gcc -E' ac_cv_prog_CXX=arm-linux-gnueabi-g++ ac_cv_prog_MPICXX=mpic++ ac_cv_prog_RANLIB=arm-linux-gnueabi-ranlib ac_cv_prog_STRIP=arm-linux-gnueabi-strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_sizeof_char=1 ac_cv_sizeof_char_p=4 ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_int=4 ac_cv_sizeof_long=4 ac_cv_sizeof_long_double=8 ac_cv_sizeof_long_long=8 ac_cv_sizeof_short=2 ac_cv_sizeof_signed_char=1 ac_cv_sizeof_unsigned_char=1 ac_cv_sizeof_unsigned_int=4 ac_cv_sizeof_unsigned_long=4 ac_cv_sizeof_unsigned_long_long=8 ac_cv_sizeof_unsigned_short=2 ac_cv_sizeof_void_p=4 ac_cv_struct_tm=time.h ac_cv_target=arm-unknown-linux-gnueabi ac_cv_type__Bool=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes am_cv_prog_tar_ustar=gnutar lt_cv_sys_lib_dlsearch_path_spec=' /lib/arm-linux-gnueabi /usr/lib/arm-linux-gnueabi /lib /usr/lib /usr/local/lib' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /<>/config/missing aclocal-1.16' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AUTOCONF='${SHELL} /<>/config/missing autoconf' AUTOHEADER='${SHELL} /<>/config/missing autoheader' AUTOMAKE='${SHELL} /<>/config/missing automake-1.16' AWK='mawk' CC='' CCDEPMODE='depmode=none' CFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' CPP='arm-linux-gnueabi-gcc -E' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/ncl -DIGNORE_NXS_ASSERT' CXX='mpic++' CXXDEPMODE='depmode=none' CXXFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -DSUBROUTINE_GARLI -O3 -ffast-math -funroll-loops -fstrict-aliasing' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' GARLI_LIBS='' GREP='/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='-Wl,-z,relro -Wl,-z,now -L/usr/lib' LIBOBJS=' strtod.o' LIBS=' -lncl' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /<>/config/missing makeinfo' MKDIR_P='/bin/mkdir -p' MPICXX='mpic++' MPILIBS='' NCL_BIN_DIR='/usr/bin' OBJEXT='o' PACKAGE='garli' PACKAGE_BUGREPORT='garli.support@gmail.com' PACKAGE_NAME='Garli' PACKAGE_STRING='Garli 2.1' PACKAGE_TARNAME='garli' PACKAGE_URL='' PACKAGE_VERSION='2.1' PATH_SEPARATOR=':' POW_LIB='-lm' RANLIB='arm-linux-gnueabi-ranlib' SET_MAKE='' SHELL='/bin/bash' STRIP='arm-linux-gnueabi-strip' VERSION='2.1' ac_ct_CC='' ac_ct_CXX='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='tar --format=ustar -chf - "$$tardir"' am__untar='tar -xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='arm-unknown-linux-gnueabi' host_alias='arm-linux-gnueabi' host_cpu='arm' host_os='linux-gnueabi' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/config/install-sh' libdir='${prefix}/lib/arm-linux-gnueabi' libexecdir='${prefix}/lib/arm-linux-gnueabi' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target='arm-unknown-linux-gnueabi' target_alias='' target_cpu='arm' target_os='linux-gnueabi' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "Garli" #define PACKAGE_TARNAME "garli" #define PACKAGE_VERSION "2.1" #define PACKAGE_STRING "Garli 2.1" #define PACKAGE_BUGREPORT "garli.support@gmail.com" #define PACKAGE_URL "" #define PACKAGE "garli" #define VERSION "2.1" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_FLOAT_H 1 #define HAVE_MALLOC_H 1 #define HAVE_STDDEF_H 1 #define HAVE_STDLIB_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE__BOOL 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDLIB_H 1 #define HAVE_MALLOC 1 #define HAVE_MEMMOVE 1 #define HAVE_MEMSET 1 #define HAVE_STRCHR 1 #define HAVE_STRDUP 1 #define HAVE_STRTOL 1 configure: exit 1 dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --libexecdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --with-ncl=/usr --enable-mpi returned exit code 1 make[1]: *** [debian/rules:12: override_dh_auto_configure] Error 255 make[1]: Leaving directory '/<>' make: *** [debian/rules:8: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-11-14T15:24:19Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 7176 Build-Time: 12 Distribution: unstable Fail-Stage: build Foreign Architectures: armel Host Architecture: armel Install-Time: 23 Job: garli_2.1-3 Machine Architecture: amd64 Package: garli Package-Time: 47 Source-Version: 2.1-3 Space: 7176 Status: attempted Version: 2.1-3 -------------------------------------------------------------------------------- Finished at 2019-11-14T15:24:19Z Build needed 00:00:47, 7176k disk space