sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | garli 2.1-7 (arm64) Sat, 30 Dec 2023 15:36:33 +0000 | +==============================================================================+ Package: garli Version: 2.1-7 Source Version: 2.1-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-5551e9d6-149a-4dfe-bc38-7b07b0c8988b' with '<>' I: NOTICE: Log filtering will replace 'build/garli-iANZTa/resolver-7MH2he' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-30-1403.45-F-2023-12-30-0205.42.pdiff [26.5 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-30-1403.45-F-2023-12-30-0205.42.pdiff [30.2 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-30-1403.45-F-2023-12-30-0205.42.pdiff [26.5 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9499 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-30-1403.45-F-2023-12-30-0205.42.pdiff [30.2 kB] Fetched 9881 kB in 3s (3553 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'garli' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/garli.git Please use: git clone https://salsa.debian.org/med-team/garli.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1256 kB of source archives. Get:1 http://localhost:3142/debian sid/main garli 2.1-7 (dsc) [2047 B] Get:2 http://localhost:3142/debian sid/main garli 2.1-7 (tar) [1249 kB] Get:3 http://localhost:3142/debian sid/main garli 2.1-7 (diff) [4788 B] Fetched 1256 kB in 1s (1156 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/garli-iANZTa/garli-2.1' with '<>' I: NOTICE: Log filtering will replace 'build/garli-iANZTa' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libncl-dev, libopenmpi-dev, ncl-tools, bc, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), libncl-dev, libopenmpi-dev, ncl-tools, bc, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [757 B] Get:5 copy:/<>/apt_archive ./ Packages [800 B] Fetched 2166 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-9:arm64 cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file flang-17:arm64 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:arm64 intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcap2:arm64 libcbor0.10 libcc1-0:arm64 libclang-cpp17:arm64 libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libedit2:arm64 libelf1 libevent-2.1-7:arm64 libevent-core-2.1-7 libevent-core-2.1-7:arm64 libevent-dev:arm64 libevent-extra-2.1-7:arm64 libevent-openssl-2.1-7:arm64 libevent-pthreads-2.1-7 libevent-pthreads-2.1-7:arm64 libfabric1 libfabric1:arm64 libffi8:arm64 libfido2-1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libflang-17-dev:arm64 libgcc-13-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp10:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libhwloc-dev:arm64 libhwloc-plugins libhwloc-plugins:arm64 libhwloc15 libhwloc15:arm64 libibverbs-dev:arm64 libibverbs1 libibverbs1:arm64 libicu72 libicu72:arm64 libio-string-perl libisl23:arm64 libitm1:arm64 libitm1-arm64-cross libjs-jquery libjs-jquery-ui libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libllvm17:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libltdl-dev:arm64 libltdl7:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmd0:arm64 libmpc3:arm64 libmpfr6:arm64 libmunge2 libmunge2:arm64 libncl-dev:arm64 libncl2:arm64 libnl-3-200 libnl-3-200:arm64 libnl-3-dev:arm64 libnl-route-3-200 libnl-route-3-200:arm64 libnl-route-3-dev:arm64 libnsl-dev:arm64 libnsl2:arm64 libnuma-dev:arm64 libnuma1 libnuma1:arm64 libopenmpi-dev:arm64 libopenmpi3 libopenmpi3:arm64 libpciaccess0 libpciaccess0:arm64 libpipeline1 libpmix-dev:arm64 libpmix2 libpmix2:arm64 libpsm-infinipath1 libpsm2-2 librdmacm1 librdmacm1:arm64 libreadline8 libssl3:arm64 libstdc++-13-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtinfo6:arm64 libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libucx0 libucx0:arm64 libudev1:arm64 libx11-6 libx11-6:arm64 libx11-data libxau6 libxau6:arm64 libxcb1 libxcb1:arm64 libxdmcp6 libxdmcp6:arm64 libxext6 libxext6:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:arm64 libxnvctrl0 libxnvctrl0:arm64 libyaml-perl libz3-4:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db ncl-tools:arm64 ocl-icd-libopencl1 ocl-icd-libopencl1:arm64 openmpi-bin openmpi-common openssh-client po-debconf readline-common sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc gcc-9-locales:arm64 cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 krb5-doc:arm64 krb5-user:arm64 libhwloc-contrib-plugins libjs-jquery-ui-docs libtool-doc:arm64 openmpi-doc:arm64 pciutils pciutils:arm64 libstdc++-13-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser opencl-icd opencl-icd:arm64 gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl javascript-common krb5-locales:arm64 libcoarrays-openmpi-dev:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-9:arm64 cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file flang-17:arm64 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:arm64 intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcap2:arm64 libcbor0.10 libcc1-0:arm64 libclang-cpp17:arm64 libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libedit2:arm64 libelf1 libevent-2.1-7:arm64 libevent-core-2.1-7 libevent-core-2.1-7:arm64 libevent-dev:arm64 libevent-extra-2.1-7:arm64 libevent-openssl-2.1-7:arm64 libevent-pthreads-2.1-7 libevent-pthreads-2.1-7:arm64 libfabric1 libfabric1:arm64 libffi8:arm64 libfido2-1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libflang-17-dev:arm64 libgcc-13-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp10:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libhwloc-dev:arm64 libhwloc-plugins libhwloc-plugins:arm64 libhwloc15 libhwloc15:arm64 libibverbs-dev:arm64 libibverbs1 libibverbs1:arm64 libicu72 libicu72:arm64 libio-string-perl libisl23:arm64 libitm1:arm64 libitm1-arm64-cross libjs-jquery libjs-jquery-ui libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libllvm17:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libltdl-dev:arm64 libltdl7:arm64 liblzma5:arm64 libmagic-mgc libmagic1 libmd0:arm64 libmpc3:arm64 libmpfr6:arm64 libmunge2 libmunge2:arm64 libncl-dev:arm64 libncl2:arm64 libnl-3-200 libnl-3-200:arm64 libnl-3-dev:arm64 libnl-route-3-200 libnl-route-3-200:arm64 libnl-route-3-dev:arm64 libnsl-dev:arm64 libnsl2:arm64 libnuma-dev:arm64 libnuma1 libnuma1:arm64 libopenmpi-dev:arm64 libopenmpi3 libopenmpi3:arm64 libpciaccess0 libpciaccess0:arm64 libpipeline1 libpmix-dev:arm64 libpmix2 libpmix2:arm64 libpsm-infinipath1 libpsm2-2 librdmacm1 librdmacm1:arm64 libreadline8 libssl3:arm64 libstdc++-13-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtinfo6:arm64 libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libucx0 libucx0:arm64 libudev1:arm64 libx11-6 libx11-6:arm64 libx11-data libxau6 libxau6:arm64 libxcb1 libxcb1:arm64 libxdmcp6 libxdmcp6:arm64 libxext6 libxext6:arm64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:arm64 libxnvctrl0 libxnvctrl0:arm64 libyaml-perl libz3-4:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db ncl-tools:arm64 ocl-icd-libopencl1 ocl-icd-libopencl1:arm64 openmpi-bin openmpi-common openssh-client po-debconf readline-common sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 202 newly installed, 0 to remove and 0 not upgraded. Need to get 221 MB of archives. After this operation, 1514 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:4 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2 [314 kB] Get:6 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2 [105 kB] Get:7 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2 [42.8 kB] Get:8 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:9 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:10 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:11 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-2 [89.1 kB] Get:12 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:13 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:14 http://localhost:3142/debian sid/main amd64 libbsd0 amd64 0.11.7-4 [115 kB] Get:15 http://localhost:3142/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:16 http://localhost:3142/debian sid/main amd64 libcbor0.10 amd64 0.10.2-1.1 [27.8 kB] Get:17 http://localhost:3142/debian sid/main amd64 libfido2-1 amd64 1.14.0-1 [77.4 kB] Get:18 http://localhost:3142/debian sid/main amd64 openssh-client amd64 1:9.6p1-2 [975 kB] Get:19 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:20 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:21 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:22 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:23 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:24 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:25 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:26 http://localhost:3142/debian sid/main amd64 bc amd64 1.07.1-3+b1 [110 kB] Get:27 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.41.50.20231227-1 [3371 kB] Get:28 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu-base amd64 13.2.0-7cross2 [41.0 kB] Get:29 http://localhost:3142/debian sid/main amd64 cpp-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [9771 kB] Get:30 http://localhost:3142/debian sid/main arm64 gcc-9-base arm64 9.5.0-4 [28.7 kB] Get:31 http://localhost:3142/debian sid/main arm64 gcc-13-base arm64 13.2.0-9 [41.5 kB] Get:32 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 13.2.0-9 [40.9 kB] Get:33 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.37-13 [2316 kB] Get:34 http://localhost:3142/debian sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2 [531 kB] Get:35 http://localhost:3142/debian sid/main arm64 libisl23 arm64 0.26-3 [626 kB] Get:36 http://localhost:3142/debian sid/main arm64 libmpfr6 arm64 4.2.1-1 [672 kB] Get:37 http://localhost:3142/debian sid/main arm64 libmpc3 arm64 1.3.1-1 [49.2 kB] Get:38 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.3.dfsg-3 [83.7 kB] Get:39 http://localhost:3142/debian sid/main arm64 cpp-9 arm64 9.5.0-4 [8400 kB] Get:40 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:13.2.0-2 [4164 B] Get:41 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:42 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:43 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.37-12cross1 [1006 kB] Get:44 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 13.2.0-7cross2 [40.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 13.2.0-7cross2 [112 kB] Get:46 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 13.2.0-7cross2 [23.3 kB] Get:47 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 13.2.0-7cross2 [9892 B] Get:48 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 13.2.0-7cross2 [2407 kB] Get:49 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 13.2.0-7cross2 [1068 kB] Get:50 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 13.2.0-7cross2 [2278 kB] Get:51 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 13.2.0-7cross2 [575 kB] Get:52 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 13.2.0-7cross2 [980 kB] Get:53 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 13.2.0-7cross2 [1119 kB] Get:54 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-arm64-cross all 13.2.0-7cross2 [2226 kB] Get:55 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [19.2 MB] Get:56 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:13.2.0-2 [1468 B] Get:57 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 6.5.8-1cross1 [1990 kB] Get:58 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.37-12cross1 [1427 kB] Get:59 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-arm64-cross all 13.2.0-7cross2 [2138 kB] Get:60 http://localhost:3142/debian sid/main amd64 g++-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [10.7 MB] Get:61 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:13.2.0-2 [1176 B] Get:62 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:63 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b1 [692 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:70 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:71 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:72 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:73 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:74 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:75 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:76 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:77 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.10 [3484 B] Get:78 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.9 [82.3 kB] Get:79 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:80 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:81 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:82 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:83 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:84 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:85 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1 [176 kB] Get:86 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:87 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:88 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:90 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.9 [956 kB] Get:91 http://localhost:3142/debian sid/main arm64 libmd0 arm64 1.1.0-1 [32.4 kB] Get:92 http://localhost:3142/debian sid/main arm64 libbsd0 arm64 0.11.7-4 [113 kB] Get:93 http://localhost:3142/debian sid/main arm64 libtinfo6 arm64 6.4+20231209-1 [334 kB] Get:94 http://localhost:3142/debian sid/main arm64 libedit2 arm64 3.1-20230828-1 [88.9 kB] Get:95 http://localhost:3142/debian sid/main arm64 libffi8 arm64 3.4.4-2 [20.8 kB] Get:96 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 13.2.0-9 [622 kB] Get:97 http://localhost:3142/debian sid/main arm64 libicu72 arm64 72.1-4 [9223 kB] Get:98 http://localhost:3142/debian sid/main arm64 liblzma5 arm64 5.4.5-0.3 [233 kB] Get:99 http://localhost:3142/debian sid/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b1 [625 kB] Get:100 http://localhost:3142/debian sid/main arm64 libz3-4 arm64 4.8.12-3.1 [6282 kB] Get:101 http://localhost:3142/debian sid/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [256 kB] Get:102 http://localhost:3142/debian sid/main arm64 libllvm17 arm64 1:17.0.6-3 [21.3 MB] Get:103 http://localhost:3142/debian sid/main arm64 libclang-cpp17 arm64 1:17.0.6-3 [10.8 MB] Get:104 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 13.2.0-9 [118 kB] Get:105 http://localhost:3142/debian sid/main arm64 libitm1 arm64 13.2.0-9 [23.9 kB] Get:106 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 13.2.0-9 [10.2 kB] Get:107 http://localhost:3142/debian sid/main arm64 libasan8 arm64 13.2.0-9 [2414 kB] Get:108 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 13.2.0-9 [1069 kB] Get:109 http://localhost:3142/debian sid/main arm64 libtsan2 arm64 13.2.0-9 [2286 kB] Get:110 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 13.2.0-9 [981 kB] Get:111 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 13.2.0-9 [1120 kB] Get:112 http://localhost:3142/debian sid/main arm64 libgcc-13-dev arm64 13.2.0-9 [2236 kB] Get:113 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.36-2 [90.3 kB] Get:114 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-2 [121 kB] Get:115 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-5 [32.5 kB] Get:116 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.0-2+b1 [19.9 kB] Get:117 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-5 [79.9 kB] Get:118 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2 [8844 B] Get:119 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.1.4-2 [1835 kB] Get:120 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-5 [315 kB] Get:121 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-5 [124 kB] Get:122 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.4+ds-1 [77.9 kB] Get:123 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-3 [37.5 kB] Get:124 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [192 kB] Get:125 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-3 [66.3 kB] Get:126 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.37-13 [1433 kB] Get:127 http://localhost:3142/debian sid/main arm64 libstdc++-13-dev arm64 13.2.0-9 [2139 kB] Get:128 http://localhost:3142/debian sid/main arm64 libflang-17-dev arm64 1:17.0.6-3 [16.3 MB] Get:129 http://localhost:3142/debian sid/main arm64 flang-17 arm64 1:17.0.6-3 [19.3 MB] Get:130 http://localhost:3142/debian sid/main arm64 libnl-3-200 arm64 3.7.0-0.2+b1 [60.2 kB] Get:131 http://localhost:3142/debian sid/main arm64 libnl-route-3-200 arm64 3.7.0-0.2+b1 [168 kB] Get:132 http://localhost:3142/debian sid/main arm64 libibverbs1 arm64 48.0-1 [57.6 kB] Get:133 http://localhost:3142/debian sid/main arm64 ibverbs-providers arm64 48.0-1 [313 kB] Get:134 http://localhost:3142/debian sid/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:135 http://localhost:3142/debian sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:136 http://localhost:3142/debian sid/main amd64 libibverbs1 amd64 48.0-1 [61.2 kB] Get:137 http://localhost:3142/debian sid/main amd64 ibverbs-providers amd64 48.0-1 [340 kB] Get:138 http://localhost:3142/debian sid/main arm64 libcap2 arm64 1:2.66-4 [26.1 kB] Get:139 http://localhost:3142/debian sid/main arm64 libcc1-0 arm64 13.2.0-9 [41.6 kB] Get:140 http://localhost:3142/debian sid/main arm64 libevent-2.1-7 arm64 2.1.12-stable-8 [168 kB] Get:141 http://localhost:3142/debian sid/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get:142 http://localhost:3142/debian sid/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-8 [124 kB] Get:143 http://localhost:3142/debian sid/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-8 [101 kB] Get:144 http://localhost:3142/debian sid/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-8 [53.7 kB] Get:145 http://localhost:3142/debian sid/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-8 [59.7 kB] Get:146 http://localhost:3142/debian sid/main arm64 libevent-dev arm64 2.1.12-stable-8 [302 kB] Get:147 http://localhost:3142/debian sid/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get:148 http://localhost:3142/debian sid/main arm64 librdmacm1 arm64 48.0-1 [65.8 kB] Get:149 http://localhost:3142/debian sid/main arm64 libfabric1 arm64 1.17.0-3 [476 kB] Get:150 http://localhost:3142/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:151 http://localhost:3142/debian sid/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:152 http://localhost:3142/debian sid/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:153 http://localhost:3142/debian sid/main amd64 librdmacm1 amd64 48.0-1 [69.5 kB] Get:154 http://localhost:3142/debian sid/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get:155 http://localhost:3142/debian sid/main arm64 libudev1 arm64 255.2-2 [116 kB] Get:156 http://localhost:3142/debian sid/main arm64 libhwloc15 arm64 2.10.0-1 [139 kB] Get:157 http://localhost:3142/debian sid/main arm64 libnuma1 arm64 2.0.16-1 [20.3 kB] Get:158 http://localhost:3142/debian sid/main arm64 libnuma-dev arm64 2.0.16-1 [36.0 kB] Get:159 http://localhost:3142/debian sid/main arm64 libltdl7 arm64 2.4.7-7 [392 kB] Get:160 http://localhost:3142/debian sid/main arm64 libltdl-dev arm64 2.4.7-7 [165 kB] Get:161 http://localhost:3142/debian sid/main arm64 libhwloc-dev arm64 2.10.0-1 [233 kB] Get:162 http://localhost:3142/debian sid/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:163 http://localhost:3142/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:164 http://localhost:3142/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:165 http://localhost:3142/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:166 http://localhost:3142/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:167 http://localhost:3142/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:168 http://localhost:3142/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:169 http://localhost:3142/debian sid/main amd64 libxnvctrl0 amd64 525.125.06-1 [13.5 kB] Get:170 http://localhost:3142/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [39.7 kB] Get:171 http://localhost:3142/debian sid/main amd64 libhwloc15 amd64 2.10.0-1 [161 kB] Get:172 http://localhost:3142/debian sid/main amd64 libhwloc-plugins amd64 2.10.0-1 [17.7 kB] Get:173 http://localhost:3142/debian sid/main arm64 libpciaccess0 arm64 0.17-3 [50.8 kB] Get:174 http://localhost:3142/debian sid/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get:175 http://localhost:3142/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:176 http://localhost:3142/debian sid/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get:177 http://localhost:3142/debian sid/main arm64 libx11-6 arm64 2:1.8.7-1 [772 kB] Get:178 http://localhost:3142/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get:179 http://localhost:3142/debian sid/main arm64 libxnvctrl0 arm64 525.125.06-1 [13.4 kB] Get:180 http://localhost:3142/debian sid/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [38.6 kB] Get:181 http://localhost:3142/debian sid/main arm64 libhwloc-plugins arm64 2.10.0-1 [17.7 kB] Get:182 http://localhost:3142/debian sid/main arm64 libnl-3-dev arm64 3.7.0-0.2+b1 [104 kB] Get:183 http://localhost:3142/debian sid/main arm64 libnl-route-3-dev arm64 3.7.0-0.2+b1 [200 kB] Get:184 http://localhost:3142/debian sid/main arm64 libibverbs-dev arm64 48.0-1 [622 kB] Get:185 http://localhost:3142/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:186 http://localhost:3142/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:187 http://localhost:3142/debian sid/main amd64 libmunge2 amd64 0.5.15-3 [19.7 kB] Get:188 http://localhost:3142/debian sid/main arm64 libmunge2 arm64 0.5.15-3 [19.1 kB] Get:189 http://localhost:3142/debian sid/main arm64 libncl2 arm64 2.1.21+git20210811.b1213a7-5 [361 kB] Get:190 http://localhost:3142/debian sid/main arm64 libncl-dev arm64 2.1.21+git20210811.b1213a7-5 [553 kB] Get:191 http://localhost:3142/debian sid/main arm64 libpmix2 arm64 5.0.1-4 [573 kB] Get:192 http://localhost:3142/debian sid/main arm64 libucx0 arm64 1.15.0-1 [806 kB] Get:193 http://localhost:3142/debian sid/main arm64 libopenmpi3 arm64 4.1.6-3 [2165 kB] Get:194 http://localhost:3142/debian sid/main amd64 openmpi-common all 4.1.6-3 [168 kB] Get:195 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3 [915 kB] Get:196 http://localhost:3142/debian sid/main arm64 libpmix-dev arm64 5.0.1-4 [3896 kB] Get:197 http://localhost:3142/debian sid/main amd64 libpmix2 amd64 5.0.1-4 [644 kB] Get:198 http://localhost:3142/debian sid/main amd64 libucx0 amd64 1.15.0-1 [940 kB] Get:199 http://localhost:3142/debian sid/main amd64 libopenmpi3 amd64 4.1.6-3 [2429 kB] Get:200 http://localhost:3142/debian sid/main amd64 openmpi-bin amd64 4.1.6-3 [225 kB] Get:201 http://localhost:3142/debian sid/main arm64 libopenmpi-dev arm64 4.1.6-3 [956 kB] Get:202 http://localhost:3142/debian sid/main arm64 ncl-tools arm64 2.1.21+git20210811.b1213a7-5 [187 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 221 MB in 1s (188 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16231 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-2_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../004-libmagic1_1%3a5.45-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-2_amd64.deb ... Unpacking file (1:5.45-2) ... 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Preparing to unpack .../018-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../023-libreadline8_8.2-3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-3) ... Selecting previously unselected package bc. Preparing to unpack .../024-bc_1.07.1-3+b1_amd64.deb ... Unpacking bc (1.07.1-3+b1) ... 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Selecting previously unselected package libgcc-s1:arm64. Preparing to unpack .../030-libgcc-s1_13.2.0-9_arm64.deb ... Unpacking libgcc-s1:arm64 (13.2.0-9) ... Selecting previously unselected package libc6:arm64. Preparing to unpack .../031-libc6_2.37-13_arm64.deb ... Unpacking libc6:arm64 (2.37-13) ... Selecting previously unselected package libgmp10:arm64. Preparing to unpack .../032-libgmp10_2%3a6.3.0+dfsg-2_arm64.deb ... Unpacking libgmp10:arm64 (2:6.3.0+dfsg-2) ... Selecting previously unselected package libisl23:arm64. Preparing to unpack .../033-libisl23_0.26-3_arm64.deb ... Unpacking libisl23:arm64 (0.26-3) ... Selecting previously unselected package libmpfr6:arm64. Preparing to unpack .../034-libmpfr6_4.2.1-1_arm64.deb ... Unpacking libmpfr6:arm64 (4.2.1-1) ... Selecting previously unselected package libmpc3:arm64. Preparing to unpack .../035-libmpc3_1.3.1-1_arm64.deb ... Unpacking libmpc3:arm64 (1.3.1-1) ... Selecting previously unselected package zlib1g:arm64. 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Setting up file (1:5.45-2) ... Setting up libyaml-perl (1.30-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:arm64 (13.2.0-9) ... Setting up libmunge2:amd64 (0.5.15-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up libc6-arm64-cross (2.37-12cross1) ... Setting up libhwloc15:amd64 (2.10.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up autopoint (0.21-14) ... Setting up libitm1-arm64-cross (13.2.0-7cross2) ... Setting up autoconf (2.71-3) ... Setting up linux-libc-dev-arm64-cross (6.5.8-1cross1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up sensible-utils (0.0.20) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.6-3) ... Setting up libsub-override-perl (0.10-1) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.14.0-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libbsd0:amd64 (0.11.7-4) ... Setting up libelf1:amd64 (0.190-1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b1) ... Setting up liblocale-gettext-perl (1.07-6) ... Setting up gcc-9-base:arm64 (9.5.0-4) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libgcc-s1-arm64-cross (13.2.0-7cross2) ... Setting up libatomic1-arm64-cross (13.2.0-7cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (13.2.0-7cross2) ... Setting up libgomp1-arm64-cross (13.2.0-7cross2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-14) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libtool (2.4.7-7) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up bc (1.07.1-3+b1) ... Setting up libhwasan0-arm64-cross (13.2.0-7cross2) ... Setting up libc6-dev-arm64-cross (2.37-12cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libstdc++6-arm64-cross (13.2.0-7cross2) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libasan8-arm64-cross (13.2.0-7cross2) ... Setting up libtsan2-arm64-cross (13.2.0-7cross2) ... Setting up libibverbs1:amd64 (48.0-1) ... Setting up libubsan1-arm64-cross (13.2.0-7cross2) ... Setting up ibverbs-providers:amd64 (48.0-1) ... Setting up openssh-client (1:9.6p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxnvctrl0:amd64 (525.125.06-1) ... Setting up libgcc-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up librdmacm1:amd64 (48.0-1) ... Setting up libucx0:amd64 (1.15.0-1) ... Setting up debhelper (13.11.9) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libhwloc-plugins:amd64 (2.10.0-1) ... Setting up libstdc++-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-2) ... Setting up libpmix2:amd64 (5.0.1-4) ... Setting up libopenmpi3:amd64 (4.1.6-3) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-2) ... Setting up openmpi-bin (4.1.6-3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.10) ... Setting up libgcc-s1:arm64 (13.2.0-9) ... Setting up libc6:arm64 (2.37-13) ... Setting up libffi8:arm64 (3.4.4-2) ... Setting up libnuma1:arm64 (2.0.16-1) ... Setting up libmd0:arm64 (1.1.0-1) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... Setting up libhwasan0:arm64 (13.2.0-9) ... Setting up libasan8:arm64 (13.2.0-9) ... Setting up libnl-3-200:arm64 (3.7.0-0.2+b1) ... Setting up libtsan2:arm64 (13.2.0-9) ... Setting up libbsd0:arm64 (0.11.7-4) ... Setting up libstdc++6:arm64 (13.2.0-9) ... Setting up liblsan0:arm64 (13.2.0-9) ... Setting up libitm1:arm64 (13.2.0-9) ... Setting up libtinfo6:arm64 (6.4+20231209-1) ... Setting up libzstd1:arm64 (1.5.5+dfsg2-2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libkeyutils1:arm64 (1.6.3-2) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up libicu72:arm64 (72.1-4) ... Setting up liblzma5:arm64 (5.4.5-0.3) ... Setting up libedit2:arm64 (3.1-20230828-1) ... Setting up libssl3:arm64 (3.1.4-2) ... Setting up zlib1g:arm64 (1:1.3.dfsg-3) ... Setting up libcrypt1:arm64 (1:4.4.36-2) ... Setting up libcom-err2:arm64 (1.47.0-2+b1) ... Setting up libgomp1:arm64 (13.2.0-9) ... Setting up libncl2:arm64 (2.1.21+git20210811.b1213a7-5) ... Setting up libcap2:arm64 (1:2.66-4) ... Setting up libncl-dev:arm64 (2.1.21+git20210811.b1213a7-5) ... Setting up libkrb5support0:arm64 (1.20.1-5) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.2+b1) ... Setting up libz3-4:arm64 (4.8.12-3.1) ... Setting up libmunge2:arm64 (0.5.15-3) ... Setting up libgmp10:arm64 (2:6.3.0+dfsg-2) ... Setting up libevent-core-2.1-7:arm64 (2.1.12-stable-8) ... Setting up libatomic1:arm64 (13.2.0-9) ... Setting up libevent-2.1-7:arm64 (2.1.12-stable-8) ... Setting up libk5crypto3:arm64 (1.20.1-5) ... Setting up libltdl7:arm64 (2.4.7-7) ... Setting up libudev1:arm64 (255.2-2) ... Setting up libubsan1:arm64 (13.2.0-9) ... Setting up libnl-3-dev:arm64 (3.7.0-0.2+b1) ... Setting up libgcc-13-dev:arm64 (13.2.0-9) ... Setting up libcrypt-dev:arm64 (1:4.4.36-2) ... Setting up libx11-6:arm64 (2:1.8.7-1) ... Setting up libkrb5-3:arm64 (1.20.1-5) ... Setting up libisl23:arm64 (0.26-3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b1) ... Setting up libcc1-0:arm64 (13.2.0-9) ... 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Setting up libopenmpi-dev:arm64 (4.1.6-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231227-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-arm64-cross_13.2.0-7cross2 linux-libc-dev_6.6.8-1 Package versions: adduser_3.137 apt_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 bc_1.07.1-3+b1 binutils_2.41.50.20231227-1 binutils-aarch64-linux-gnu_2.41.50.20231227-1 binutils-common_2.41.50.20231227-1 binutils-x86-64-linux-gnu_2.41.50.20231227-1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.4-2+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-aarch64-linux-gnu_13.2.0-7cross2 cpp-9_9.5.0-4 cpp-aarch64-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-arm64_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 flang-17_1:17.0.6-3 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-aarch64-linux-gnu_13.2.0-7cross2 g++-aarch64-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-aarch64-linux-gnu_13.2.0-7cross2 gcc-13-aarch64-linux-gnu-base_13.2.0-7cross2 gcc-13-base_13.2.0-9 gcc-13-cross-base_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-aarch64-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 ibverbs-providers_48.0-1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-4 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-arm64-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-arm64-cross_13.2.0-7cross2 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231227-1 libblkid1_2.39.3-2 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-arm64-cross_2.37-12cross1 libc6-dev_2.37-13 libc6-dev-arm64-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4 libcbor0.10_0.10.2-1.1 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libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-arm64-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.2-2 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-9 libtsan2-arm64-cross_13.2.0-7cross2 libubsan1_13.2.0-9 libubsan1-arm64-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libucx0_1.15.0-1 libudev1_255.2-2 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-2 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b1 libxnvctrl0_525.125.06-1 libxxhash0_0.8.2-2 libyaml-perl_1.30-2 libz3-4_4.8.12-3.1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.8-1 linux-libc-dev-arm64-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-2 ncl-tools_2.1.21+git20210811.b1213a7-5 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 ocl-icd-libopencl1_2.3.2-1 openmpi-bin_4.1.6-3 openmpi-common_4.1.6-3 openssh-client_1:9.6p1-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-10 po-debconf_1.0.21+nmu1 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-2 tzdata_2023c-11 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-2 util-linux-extra_2.39.3-2 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: garli Binary: garli, garli-mpi, garli-examples Architecture: any all Version: 2.1-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/Ashod/garli Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/garli Vcs-Git: https://salsa.debian.org/med-team/garli.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libncl-dev, libopenmpi-dev, ncl-tools, bc Package-List: garli deb science optional arch=any garli-examples deb science optional arch=all garli-mpi deb science optional arch=any Checksums-Sha1: a7a5cb81f92ed19672324b5aacf8c7da1f6a2df3 1248730 garli_2.1.orig.tar.gz 8867c1a2f13f8697af3c34b306968f43b53ebe35 4788 garli_2.1-7.debian.tar.xz Checksums-Sha256: 00aa31af5d8ecc2cb9bd276ce93b6580ae6cff93f4f5e1145d95d5fe6359e1b6 1248730 garli_2.1.orig.tar.gz e20b992291e1e313188bc2351c988e0b2129e7b0543b9e088f17cf1a0882d27c 4788 garli_2.1-7.debian.tar.xz Files: 83d6720df816365182291306383d056c 1248730 garli_2.1.orig.tar.gz fe894843d93d33864ab58bb4015e09b4 4788 garli_2.1-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmISUVwACgkQ6NN64vCf SHIKug//eCdWTZVppWlDvM+BKXLfelwLC3Qe8KIuo5UKgz7THR4TqjpysIQNxhoI DC+z6Ik7orUkIuL/otT186kQrOOtWRdYd5VCqBKhgaC4rtlLe/iQ5WBQk8otWIWb ASWBTDi+NoKNqm9oG3W35kfjn8AarPfruKsVNeqvO/YhjEf0F/gGWFe8CDtzRbZG hhEnx0NkXUGqKu15GPgxjvAxgMbPcnDmAuQ0mLmhmFdpKGKyK5F44eOA0ai2Ufog uh516xGLa9VvpyuG8Tgj6eEb4rbyPN+LsBZQioyHU2YlcmDzqFwkockLMFxaJkjM dRuWx+P1+7zBmf0HxJJMKGTOZGkbqyFXY/To4a/0vZmRl+b6l1bVyCzts/HSkaA8 OxtcJ983VQV2SG1xEcXLIdcwEW3nEmPh04YSDJ4q3W9nvf7jpyVvL8eBMYg0BlRF 8dY7ntJC504kpiU2h87Z+YPS8Z1rCRwZ0plHgp7swnMwphHZNzdJEhon1dy9eYA3 36Zfa4TqHbz4tIv120t2UoR9OiPLLmGq1MisTVgv7VOce1pKnwxmTE0AKkc5pvtB difTDkM77v268vcP+IzhkqdM6xg2aT+h4eUudEsYnaC5rewrOhslj6BrynHefxqS Iia8Y4CMftmS6qUtdAu6O2WmNpCOS+Mfh5YRIAQ07ZIV7GUo9lU= =7lh0 -----END PGP SIGNATURE----- gpgv: Signature made Sun Feb 20 14:34:04 2022 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./garli_2.1-7.dsc: no acceptable signature found dpkg-source: info: extracting garli in /<> dpkg-source: info: unpacking garli_2.1.orig.tar.gz dpkg-source: info: unpacking garli_2.1-7.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.Tz9F9R3Lsn/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-5551e9d6-149a-4dfe-bc38-7b07b0c8988b SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package garli dpkg-buildpackage: info: source version 2.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory configure.ac:8: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:8: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:8: the top level configure.ac:47: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:47: the top level configure.ac:64: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:64: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:64: the top level configure.ac:68: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:68: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:68: the top level configure.ac:80: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:80: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:80: the top level configure.ac:92: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:92: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:92: the top level configure.ac:104: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:104: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:104: the top level configure.ac:113: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:113: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:113: the top level configure.ac:122: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:122: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:122: the top level configure.ac:131: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:131: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:131: the top level configure.ac:140: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:140: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:140: the top level configure.ac:224: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:224: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... config/acx_mpi.m4:74: ACX_MPI is expanded from... configure.ac:224: the top level configure.ac:249: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:249: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:249: the top level configure.ac:280: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:280: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:280: the top level configure.ac:339: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:339: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:339: the top level configure.ac:349: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:349: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:349: the top level configure.ac:355: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ./lib/autoconf/lang.m4:199: AC_LANG_CONFTEST is expanded from... ./lib/autoconf/general.m4:2823: _AC_COMPILE_IFELSE is expanded from... ./lib/autoconf/general.m4:2839: AC_COMPILE_IFELSE is expanded from... configure.ac:355: the top level configure.ac:25: warning: support for distribution archives compressed with legacy program 'compress' is deprecated. configure.ac:25: It will be removed in Automake 2.0 debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # First build MPI version of Garli dh_auto_configure -- --with-ncl=/usr --enable-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --with-ncl=/usr --enable-mpi configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking target system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1000' is supported by ustar format... yes checking whether GID '1000' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to enable C11 features... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-gcc... none checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking for aarch64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of aarch64-linux-gnu-g++... none checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for malloc.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for sys/time.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for error_at_line... yes checking for GNU libc compatible malloc... (cached) yes checking for working strtod... no checking for pow... no checking for pow in -lm... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for pow... (cached) no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strtol... yes configure: *** NOTE: compiling MPI run distributing version checking for mpic++... mpic++ checking for MPI_Init... no checking for MPI_Init in -lmpi... no checking for MPI_Init in -lmpich... no configure: error: Problem with link flags. Most likely a library cannot be found. Check that any libraries listed below can be found in a system default location or a location specified in LDFLAGS with a -L. LIBS= -lncl LDFLAGS=-Wl,-z,relro -Wl,-z,now -L/usr/lib tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Garli configure 2.1, which was generated by GNU Autoconf 2.71. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules '--libdir=${prefix}/lib/aarch64-linux-gnu' --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --with-ncl=/usr --enable-mpi ## --------- ## ## Platform. ## ## --------- ## hostname = debian-ci-siliconvalley uname -m = x86_64 uname -r = 6.1.0-13-amd64 uname -s = Linux uname -v = #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin/ PATH: /usr/local/bin/ PATH: /usr/sbin/ PATH: /usr/bin/ PATH: /sbin/ PATH: /bin/ PATH: /usr/games/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:2288: loading site script /etc/dpkg-cross/cross-config.arm64 | # read in package-specific and global values. | echo "Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64)" | foobar=`dirname $ac_site_file` | echo "Reading $foobar/cross-config.cache" | . `dirname $ac_site_file`/cross-config.cache | # now ensure the real architecture-dependent values take priority | ac_cv_c_bigendian=no | ac_cv_c_char_unsigned=yes | | #lots of things: turn off stack protector | libc_cv_fno_stack_protector=no | | # Supplemental groups are disabled by default when crossing coreutils. | # Should this go in generic file? | ac_cv_func_getgroups_works=yes | | #Syscall resumable test passes (ie wait syscall is resumable) | ac_cv_sys_restartable_syscalls=yes | | #Void ptr longer than long | ap_cv_void_ptr_lt_long=no | | #apr | #Verified with native test program | apr_cv_process_shared_works=yes | #Verifed with native test program | apr_cv_mutex_robust_shared=yes | #probably more general than just APR. verifed by cross compiling and running test from configure | | # mysql | # mysql wants to know stack direction: | # STACK_DIRECTION > 0 => grows toward higher addresses | # STACK_DIRECTION < 0 => grows toward lower addresses | # STACK_DIRECTION = 0 => direction of growth unknown | ac_cv_c_stack_direction=-1 | | | path=`dirname $ac_site_file` | # now allow package-specific architecture-independent values to be set | if [ -d $path/cross-config.d/arm64/ ]; then | for file in `ls $path/cross-config.d/arm64/`; do | if [ "$file" = "$PACKAGE" -o "$file" = "$PACKAGE_NAME" ]; then | [ -d $path/cross-config.d/arm64/$file ] || . $path/cross-config.d/arm64/$file | HAVE_PKG_CACHE=1 | fi | done | fi | | if [ -z "$HAVE_PKG_CACHE" ]; then | # orbit2 - only needed until liborbit-dev provides these directly | # using the mechanism above. | if [ "$PACKAGE" = "orbit2" -o "$PACKAGE_NAME" = "ORBit2" ]; then | ac_cv_alignof_CORBA_octet=1 | ac_cv_alignof_CORBA_boolean=1 | ac_cv_alignof_CORBA_char=1 | ac_cv_alignof_CORBA_wchar=2 | ac_cv_alignof_CORBA_short=2 | ac_cv_alignof_CORBA_long=4 | ac_cv_alignof_CORBA_long_long=4 | ac_cv_alignof_CORBA_float=4 | ac_cv_alignof_CORBA_double=4 | ac_cv_alignof_CORBA_long_double=4 | ac_cv_alignof_CORBA_struct=4 | ac_cv_alignof_CORBA_pointer=4 | fi | fi configure:2863: looking for aux files: compile missing install-sh config.guess config.sub configure:2876: trying ./config/ configure:2905: ./config/compile found configure:2905: ./config/missing found configure:2887: ./config/install-sh found configure:2905: ./config/config.guess found configure:2905: ./config/config.sub found configure:3035: checking build system type configure:3050: result: x86_64-pc-linux-gnu configure:3070: checking host system type configure:3084: result: aarch64-unknown-linux-gnu configure:3104: checking target system type configure:3118: result: aarch64-unknown-linux-gnu configure:3168: checking for a BSD-compatible install configure:3241: result: /usr/bin/install -c configure:3252: checking whether build environment is sane configure:3307: result: yes configure:3363: checking for aarch64-linux-gnu-strip configure:3384: found /usr/bin/aarch64-linux-gnu-strip configure:3395: result: aarch64-linux-gnu-strip configure:3466: checking for a race-free mkdir -p configure:3510: result: /usr/bin/mkdir -p configure:3517: checking for gawk configure:3552: result: no configure:3517: checking for mawk configure:3538: found /usr/bin/mawk configure:3549: result: mawk configure:3560: checking whether make sets $(MAKE) configure:3583: result: yes configure:3613: checking whether make supports nested variables configure:3631: result: yes configure:3716: checking whether UID '1000' is supported by ustar format configure:3719: result: yes configure:3726: checking whether GID '1000' is supported by ustar format configure:3729: result: yes configure:3737: checking how to create a ustar tar archive configure:3748: tar --version tar (GNU tar) 1.35 Copyright (C) 2023 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later . This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by John Gilmore and Jay Fenlason. configure:3751: $? = 0 configure:3791: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar configure:3794: $? = 0 configure:3798: tar -xf - &5 aarch64-linux-gnu-gcc (Debian 13.2.0-7) 13.2.0 Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4364: $? = 0 configure:4353: aarch64-linux-gnu-gcc -v >&5 Using built-in specs. COLLECT_GCC=aarch64-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc-cross/aarch64-linux-gnu/13/lto-wrapper Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=aarch64-linux-gnu --program-prefix=aarch64-linux-gnu- --includedir=/usr/aarch64-linux-gnu/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-7) configure:4364: $? = 0 configure:4353: aarch64-linux-gnu-gcc -V >&5 aarch64-linux-gnu-gcc: error: unrecognized command-line option '-V' aarch64-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:4364: $? = 1 configure:4353: aarch64-linux-gnu-gcc -qversion >&5 aarch64-linux-gnu-gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'? aarch64-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:4364: $? = 1 configure:4353: aarch64-linux-gnu-gcc -version >&5 aarch64-linux-gnu-gcc: error: unrecognized command-line option '-version' aarch64-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:4364: $? = 1 configure:4384: checking whether the C compiler works configure:4406: aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:4410: $? = 0 configure:4460: result: yes configure:4463: checking for C compiler default output file name configure:4465: result: a.out configure:4471: checking for suffix of executables configure:4478: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:4482: $? = 0 configure:4505: result: configure:4527: checking whether we are cross compiling configure:4565: result: yes configure:4570: checking for suffix of object files configure:4593: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4597: $? = 0 configure:4619: result: o configure:4623: checking whether the compiler supports GNU C configure:4643: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4643: $? = 0 configure:4653: result: yes configure:4664: checking whether aarch64-linux-gnu-gcc accepts -g configure:4685: aarch64-linux-gnu-gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4685: $? = 0 configure:4729: result: yes configure:4749: checking for aarch64-linux-gnu-gcc option to enable C11 features configure:4764: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4764: $? = 0 configure:4782: result: none needed configure:4898: checking whether aarch64-linux-gnu-gcc understands -c and -o together configure:4921: aarch64-linux-gnu-gcc -c conftest.c -o conftest2.o configure:4924: $? = 0 configure:4921: aarch64-linux-gnu-gcc -c conftest.c -o conftest2.o configure:4924: $? = 0 configure:4936: result: yes configure:4956: checking whether make supports the include directive configure:4971: make -f confmf.GNU && cat confinc.out make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' this is the am__doit target configure:4974: $? = 0 configure:4993: result: yes (GNU style) configure:5019: checking dependency style of aarch64-linux-gnu-gcc configure:5131: result: none configure:5151: checking how to run the C preprocessor configure:5177: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5177: $? = 0 configure:5192: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory 11 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:5192: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | /* end confdefs.h. */ | #include configure:5219: result: aarch64-linux-gnu-gcc -E configure:5233: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:5233: $? = 0 configure:5248: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory 11 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:5248: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | /* end confdefs.h. */ | #include configure:5299: checking for aarch64-linux-gnu-g++ configure:5320: found /usr/bin/aarch64-linux-gnu-g++ configure:5331: result: aarch64-linux-gnu-g++ configure:5407: checking for C++ compiler version configure:5416: aarch64-linux-gnu-g++ --version >&5 aarch64-linux-gnu-g++ (Debian 13.2.0-7) 13.2.0 Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5427: $? = 0 configure:5416: aarch64-linux-gnu-g++ -v >&5 Using built-in specs. COLLECT_GCC=aarch64-linux-gnu-g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc-cross/aarch64-linux-gnu/13/lto-wrapper Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=aarch64-linux-gnu --program-prefix=aarch64-linux-gnu- --includedir=/usr/aarch64-linux-gnu/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-7) configure:5427: $? = 0 configure:5416: aarch64-linux-gnu-g++ -V >&5 aarch64-linux-gnu-g++: error: unrecognized command-line option '-V' aarch64-linux-gnu-g++: fatal error: no input files compilation terminated. configure:5427: $? = 1 configure:5416: aarch64-linux-gnu-g++ -qversion >&5 aarch64-linux-gnu-g++: error: unrecognized command-line option '-qversion'; did you mean '--version'? aarch64-linux-gnu-g++: fatal error: no input files compilation terminated. configure:5427: $? = 1 configure:5431: checking whether the compiler supports GNU C++ configure:5451: aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:5451: $? = 0 configure:5461: result: yes configure:5472: checking whether aarch64-linux-gnu-g++ accepts -g configure:5493: aarch64-linux-gnu-g++ -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:5493: $? = 0 configure:5537: result: yes configure:5557: checking for aarch64-linux-gnu-g++ option to enable C++11 features configure:5572: aarch64-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 conftest.cpp: In function 'int main(int, char**)': conftest.cpp:177:25: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse] 177 | cxx11test::delegate d2(); | ^~ conftest.cpp:177:25: note: remove parentheses to default-initialize a variable 177 | cxx11test::delegate d2(); | ^~ | -- conftest.cpp:177:25: note: or replace parentheses with braces to value-initialize a variable configure:5572: $? = 0 configure:5590: result: none needed configure:5656: checking dependency style of aarch64-linux-gnu-g++ configure:5768: result: none configure:5791: checking for aarch64-linux-gnu-ranlib configure:5812: found /usr/bin/aarch64-linux-gnu-ranlib configure:5823: result: aarch64-linux-gnu-ranlib configure:5903: checking for stdio.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for stdlib.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for string.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for inttypes.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for stdint.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for strings.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for sys/stat.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for sys/types.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5903: checking for unistd.h configure:5903: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5903: $? = 0 configure:5903: result: yes configure:5928: checking for grep that handles long lines and -e configure:5992: result: /usr/bin/grep configure:6000: checking for egrep configure:6068: result: /usr/bin/grep -E configure:6074: checking for float.h configure:6074: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6074: $? = 0 configure:6074: result: yes configure:6080: checking for malloc.h configure:6080: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6080: $? = 0 configure:6080: result: yes configure:6086: checking for stddef.h configure:6086: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6086: $? = 0 configure:6086: result: yes configure:6092: checking for stdlib.h configure:6092: result: yes configure:6098: checking for sys/time.h configure:6098: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6098: $? = 0 configure:6098: result: yes configure:6107: checking for _Bool configure:6107: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6107: $? = 0 configure:6107: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:57:20: error: expected expression before ')' token 57 | if (sizeof ((_Bool))) | ^ configure:6107: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_STDIO_H | # include | #endif | #ifdef HAVE_STDLIB_H | # include | #endif | #ifdef HAVE_STRING_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main (void) | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:6107: result: yes configure:6116: checking for stdbool.h that conforms to C99 configure:6232: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6232: $? = 0 configure:6240: result: yes configure:6249: checking for an ANSI C-conforming const configure:6316: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6316: $? = 0 configure:6324: result: yes configure:6332: checking for inline configure:6349: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6349: $? = 0 configure:6358: result: inline configure:6376: checking for size_t configure:6376: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6376: $? = 0 configure:6376: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:59:21: error: expected expression before ')' token 59 | if (sizeof ((size_t))) | ^ configure:6376: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_STDIO_H | # include | #endif | #ifdef HAVE_STDLIB_H | # include | #endif | #ifdef HAVE_STRING_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main (void) | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:6376: result: yes configure:6386: checking whether struct tm is in sys/time.h or time.h configure:6407: aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6407: $? = 0 configure:6415: result: time.h configure:6425: checking for error_at_line configure:6442: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:6442: $? = 0 configure:6451: result: yes configure:6462: checking for GNU libc compatible malloc configure:6505: result: yes configure:6527: checking for working strtod configure:6581: result: no configure:6590: checking for pow configure:6590: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:45:6: warning: conflicting types for built-in function 'pow'; expected 'double(double, double)' [-Wbuiltin-declaration-mismatch] 45 | char pow (); | ^~~ conftest.c:37:1: note: 'pow' is declared in header '' 36 | #include 37 | #undef pow /usr/lib/gcc-cross/aarch64-linux-gnu/13/../../../../aarch64-linux-gnu/bin/ld: /tmp/ccJhBV6s.o: in function `main': ././conftest.c:56:(.text.startup+0xc): undefined reference to `pow' collect2: error: ld returned 1 exit status configure:6590: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_MALLOC 1 | /* end confdefs.h. */ | /* Define pow to an innocuous variant, in case declares pow. | For example, HP-UX 11i declares gettimeofday. */ | #define pow innocuous_pow | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pow (); below. */ | | #include | #undef pow | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pow (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pow || defined __stub___pow | choke me | #endif | | int | main (void) | { | return pow (); | ; | return 0; | } configure:6590: result: no configure:6597: checking for pow in -lm configure:6620: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lm >&5 conftest.c:33:6: warning: conflicting types for built-in function 'pow'; expected 'double(double, double)' [-Wbuiltin-declaration-mismatch] 33 | char pow (); | ^~~ conftest.c:1:1: note: 'pow' is declared in header '' 1 | /* confdefs.h */ configure:6620: $? = 0 configure:6630: result: yes configure:6644: checking for floor configure:6644: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:45:6: warning: conflicting types for built-in function 'floor'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 45 | char floor (); | ^~~~~ conftest.c:37:1: note: 'floor' is declared in header '' 36 | #include 37 | #undef floor /usr/lib/gcc-cross/aarch64-linux-gnu/13/../../../../aarch64-linux-gnu/bin/ld: /tmp/ccDIypfO.o: in function `main': ././conftest.c:56:(.text.startup+0xc): undefined reference to `floor' collect2: error: ld returned 1 exit status configure:6644: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_MALLOC 1 | /* end confdefs.h. */ | /* Define floor to an innocuous variant, in case declares floor. | For example, HP-UX 11i declares gettimeofday. */ | #define floor innocuous_floor | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char floor (); below. */ | | #include | #undef floor | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char floor (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_floor || defined __stub___floor | choke me | #endif | | int | main (void) | { | return floor (); | ; | return 0; | } configure:6644: result: no configure:6650: checking for memmove configure:6650: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:45:6: warning: conflicting types for built-in function 'memmove'; expected 'void *(void *, const void *, long unsigned int)' [-Wbuiltin-declaration-mismatch] 45 | char memmove (); | ^~~~~~~ conftest.c:37:1: note: 'memmove' is declared in header '' 36 | #include 37 | #undef memmove configure:6650: $? = 0 configure:6650: result: yes configure:6656: checking for memset configure:6656: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:46:6: warning: conflicting types for built-in function 'memset'; expected 'void *(void *, int, long unsigned int)' [-Wbuiltin-declaration-mismatch] 46 | char memset (); | ^~~~~~ conftest.c:38:1: note: 'memset' is declared in header '' 37 | #include 38 | #undef memset configure:6656: $? = 0 configure:6656: result: yes configure:6662: checking for pow configure:6662: result: no configure:6668: checking for sqrt configure:6668: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:47:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 47 | char sqrt (); | ^~~~ conftest.c:39:1: note: 'sqrt' is declared in header '' 38 | #include 39 | #undef sqrt /usr/lib/gcc-cross/aarch64-linux-gnu/13/../../../../aarch64-linux-gnu/bin/ld: /tmp/ccfqyRs8.o: in function `main': ././conftest.c:58:(.text.startup+0xc): undefined reference to `sqrt' collect2: error: ld returned 1 exit status configure:6668: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | /* end confdefs.h. */ | /* Define sqrt to an innocuous variant, in case declares sqrt. | For example, HP-UX 11i declares gettimeofday. */ | #define sqrt innocuous_sqrt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sqrt (); below. */ | | #include | #undef sqrt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sqrt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sqrt || defined __stub___sqrt | choke me | #endif | | int | main (void) | { | return sqrt (); | ; | return 0; | } configure:6668: result: no configure:6674: checking for strchr configure:6674: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:47:6: warning: conflicting types for built-in function 'strchr'; expected 'char *(const char *, int)' [-Wbuiltin-declaration-mismatch] 47 | char strchr (); | ^~~~~~ conftest.c:39:1: note: 'strchr' is declared in header '' 38 | #include 39 | #undef strchr configure:6674: $? = 0 configure:6674: result: yes configure:6680: checking for strdup configure:6680: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 conftest.c:48:6: warning: conflicting types for built-in function 'strdup'; expected 'char *(const char *)' [-Wbuiltin-declaration-mismatch] 48 | char strdup (); | ^~~~~~ configure:6680: $? = 0 configure:6680: result: yes configure:6686: checking for strtol configure:6686: aarch64-linux-gnu-gcc -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:6686: $? = 0 configure:6686: result: yes configure:6807: *** NOTE: compiling MPI run distributing version configure:6943: checking for mpic++ configure:6964: found /usr/bin/mpic++ configure:6975: result: mpic++ configure:6993: checking for MPI_Init configure:6993: mpic++ -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.cpp >&5 g++: error: unrecognized command-line option '-mbranch-protection=standard' configure:6993: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | /* Define MPI_Init to an innocuous variant, in case declares MPI_Init. | For example, HP-UX 11i declares gettimeofday. */ | #define MPI_Init innocuous_MPI_Init | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char MPI_Init (); below. */ | | #include | #undef MPI_Init | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char MPI_Init (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_MPI_Init || defined __stub___MPI_Init | choke me | #endif | | int | main (void) | { | return MPI_Init (); | ; | return 0; | } configure:6993: result: no configure:7002: checking for MPI_Init in -lmpi configure:7024: mpic++ -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.cpp -lmpi >&5 g++: error: unrecognized command-line option '-mbranch-protection=standard' configure:7024: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | | namespace conftest { | extern "C" int MPI_Init (); | } | int | main (void) | { | return conftest::MPI_Init (); | ; | return 0; | } configure:7034: result: no configure:7043: checking for MPI_Init in -lmpich configure:7065: mpic++ -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.cpp -lmpich >&5 g++: error: unrecognized command-line option '-mbranch-protection=standard' configure:7065: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | | namespace conftest { | extern "C" int MPI_Init (); | } | int | main (void) | { | return conftest::MPI_Init (); | ; | return 0; | } configure:7075: result: no configure:7250: mpic++ -o conftest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -DSUBROUTINE_GARLI -O3 -ffast-math -funroll-loops -fstrict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/ncl -DIGNORE_NXS_ASSERT -Wl,-z,relro -Wl,-z,now -L/usr/lib conftest.cpp -lncl >&5 g++: error: unrecognized command-line option '-mbranch-protection=standard' configure:7250: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Garli" | #define PACKAGE_TARNAME "garli" | #define PACKAGE_VERSION "2.1" | #define PACKAGE_STRING "Garli 2.1" | #define PACKAGE_BUGREPORT "garli.support@gmail.com" | #define PACKAGE_URL "" | #define PACKAGE "garli" | #define VERSION "2.1" | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_STRCHR 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOL 1 | /* end confdefs.h. */ | | int | main (void) | { | int foo=2; | ; | return 0; | } configure:7254: error: Problem with link flags. Most likely a library cannot be found. Check that any libraries listed below can be found in a system default location or a location specified in LDFLAGS with a -L. LIBS= -lncl LDFLAGS=-Wl,-z,relro -Wl,-z,now -L/usr/lib ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_bigendian=no ac_cv_c_char_unsigned=yes ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_c_stack_direction=-1 ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,-z,now' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPICXX_set= ac_cv_env_MPICXX_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=aarch64-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_MPI_Init=no ac_cv_func_floor=no ac_cv_func_getgroups_works=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memmove=yes ac_cv_func_memset=yes ac_cv_func_pow=no ac_cv_func_realloc_0_nonnull=yes ac_cv_func_setpgrp_void=yes ac_cv_func_sqrt=no ac_cv_func_strchr=yes ac_cv_func_strdup=yes ac_cv_func_strtod=no ac_cv_func_strtol=yes ac_cv_header_float_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=aarch64-unknown-linux-gnu ac_cv_lib_error_at_line=yes ac_cv_lib_m_pow=yes ac_cv_lib_mpi_MPI_Init=no ac_cv_lib_mpich_MPI_Init=no ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=mawk ac_cv_prog_CC=aarch64-linux-gnu-gcc ac_cv_prog_CPP='aarch64-linux-gnu-gcc -E' ac_cv_prog_CXX=aarch64-linux-gnu-g++ ac_cv_prog_MPICXX=mpic++ ac_cv_prog_RANLIB=aarch64-linux-gnu-ranlib ac_cv_prog_STRIP=aarch64-linux-gnu-strip ac_cv_prog_cc_c11= ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_cxx11= ac_cv_prog_cxx_g=yes ac_cv_prog_cxx_stdcxx= ac_cv_prog_make_make_set=yes ac_cv_struct_tm=time.h ac_cv_sys_restartable_syscalls=yes ac_cv_target=aarch64-unknown-linux-gnu ac_cv_type__Bool=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes am_cv_prog_tar_ustar=gnutar ap_cv_void_ptr_lt_long=no apr_cv_mutex_robust_shared=yes apr_cv_process_shared_works=yes libc_cv_fno_stack_protector=no lt_cv_sys_lib_dlsearch_path_spec=' /lib/aarch64-linux-gnu /usr/lib/aarch64-linux-gnu /lib /usr/lib /usr/local/lib' xorg_cv_malloc0_returns_null=no ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} '\''/<>/config/missing'\'' aclocal-1.16' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AUTOCONF='${SHELL} '\''/<>/config/missing'\'' autoconf' AUTOHEADER='${SHELL} '\''/<>/config/missing'\'' autoheader' AUTOMAKE='${SHELL} '\''/<>/config/missing'\'' automake-1.16' AWK='mawk' CC='' CCDEPMODE='depmode=none' CFLAGS='-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard' CPP='aarch64-linux-gnu-gcc -E' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/ncl -DIGNORE_NXS_ASSERT' CSCOPE='cscope' CTAGS='ctags' CXX='mpic++' CXXDEPMODE='depmode=none' CXXFLAGS='-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -DSUBROUTINE_GARLI -O3 -ffast-math -funroll-loops -fstrict-aliasing' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ETAGS='etags' EXEEXT='' GARLI_LIBS='' GREP='/usr/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='-Wl,-z,relro -Wl,-z,now -L/usr/lib' LIBOBJS=' strtod.o' LIBS=' -lncl' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} '\''/<>/config/missing'\'' makeinfo' MKDIR_P='/usr/bin/mkdir -p' MPICXX='mpic++' MPILIBS='' NCL_BIN_DIR='/usr/bin' OBJEXT='o' PACKAGE='garli' PACKAGE_BUGREPORT='garli.support@gmail.com' PACKAGE_NAME='Garli' PACKAGE_STRING='Garli 2.1' PACKAGE_TARNAME='garli' PACKAGE_URL='' PACKAGE_VERSION='2.1' PATH_SEPARATOR=':' POW_LIB='-lm' RANLIB='aarch64-linux-gnu-ranlib' SET_MAKE='' SHELL='/bin/bash' STRIP='aarch64-linux-gnu-strip' VERSION='2.1' ac_ct_CC='' ac_ct_CXX='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='tar --format=ustar -chf - "$$tardir"' am__untar='tar -xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='aarch64-unknown-linux-gnu' host_alias='aarch64-linux-gnu' host_cpu='aarch64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/config/install-sh' libdir='${prefix}/lib/aarch64-linux-gnu' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target='aarch64-unknown-linux-gnu' target_alias='' target_cpu='aarch64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "Garli" #define PACKAGE_TARNAME "garli" #define PACKAGE_VERSION "2.1" #define PACKAGE_STRING "Garli 2.1" #define PACKAGE_BUGREPORT "garli.support@gmail.com" #define PACKAGE_URL "" #define PACKAGE "garli" #define VERSION "2.1" #define HAVE_STDIO_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define STDC_HEADERS 1 #define HAVE_FLOAT_H 1 #define HAVE_MALLOC_H 1 #define HAVE_STDDEF_H 1 #define HAVE_STDLIB_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE__BOOL 1 #define HAVE_STDBOOL_H 1 #define HAVE_MALLOC 1 #define HAVE_MEMMOVE 1 #define HAVE_MEMSET 1 #define HAVE_STRCHR 1 #define HAVE_STRDUP 1 #define HAVE_STRTOL 1 configure: exit 1 dh_auto_configure: error: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --with-ncl=/usr --enable-mpi returned exit code 1 make[1]: *** [debian/rules:12: override_dh_auto_configure] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:8: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-12-30T15:37:13Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 7580 Build-Time: 7 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 21 Job: garli_2.1-7 Machine Architecture: amd64 Package: garli Package-Time: 40 Source-Version: 2.1-7 Space: 7580 Status: attempted Version: 2.1-7 -------------------------------------------------------------------------------- Finished at 2023-12-30T15:37:13Z Build needed 00:00:40, 7580k disk space