sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +====================================================================================+ | gatb-core 1.4.1+git20191209.9398f28+dfsg-3 (arm64) Wed, 19 Feb 2020 02:43:42 +0000 | +====================================================================================+ Package: gatb-core Version: 1.4.1+git20191209.9398f28+dfsg-3 Source Version: 1.4.1+git20191209.9398f28+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-dcf4cd05-e952-4025-ba03-185235f3d49e' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-LCFfHK/resolver-IkmoUs' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-18-0814.33.pdiff [4730 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-18-1413.21.pdiff [16.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-18-2020.30.pdiff [13.8 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-18-0814.33.pdiff [8676 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-18-1413.21.pdiff [24.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-18-2020.30.pdiff [47.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-18-2020.30.pdiff [13.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-18-2020.30.pdiff [47.9 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8110 kB] Fetched 8425 kB in 2s (4183 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libisl22 libselinux1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 699 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libselinux1 amd64 3.0-1+b1 [86.9 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libisl22 amd64 0.22.1-1 [612 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 699 kB in 0s (34.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12784 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (3.0-1+b1) over (3.0-1) ... Setting up libselinux1:amd64 (3.0-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12785 files and directories currently installed.) Preparing to unpack .../libisl22_0.22.1-1_amd64.deb ... Unpacking libisl22:amd64 (0.22.1-1) over (0.22-2) ... Setting up libisl22:amd64 (0.22.1-1) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3048 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.1+git20191209.9398f28+dfsg-3 (dsc) [2435 B] Get:2 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.1+git20191209.9398f28+dfsg-3 (tar) [2945 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.1+git20191209.9398f28+dfsg-3 (diff) [101 kB] Fetched 3048 kB in 0s (46.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gatb-core-LCFfHK/gatb-core-1.4.1+git20191209.9398f28+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-LCFfHK' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [452 B] Get:5 copy:/<>/apt_archive ./ Packages [542 B] Fetched 1951 B in 0s (98.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64 libann0 libarchive-zip-perl libarchive13 libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64 libboost1.67-dev:arm64 libbrotli1 libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcairo2 libcdt5 libcgraph6 libclang1-9 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:arm64 libcppunit-dev:arm64 libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl4 libdatrie1 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgd3 libgfortran5:arm64 libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103:arm64 libhdf5-cpp-103:arm64 libhdf5-dev:arm64 libice6 libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjbig0 libjpeg62-turbo libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp-dev:arm64 libjsoncpp1 libjsoncpp1:arm64 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm9 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsz2:arm64 libthai-data libthai0 libtiff5 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf procps sensible-utils ucf x11-common zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation cmake-doc ninja-build gcc-9-locales cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc:arm64 libboost1.67-doc:arm64 libboost-atomic1.67-dev:arm64 libboost-chrono1.67-dev:arm64 libboost-container1.67-dev:arm64 libboost-context1.67-dev:arm64 libboost-contract1.67-dev:arm64 libboost-coroutine1.67-dev:arm64 libboost-date-time1.67-dev:arm64 libboost-exception1.67-dev:arm64 libboost-fiber1.67-dev:arm64 libboost-filesystem1.67-dev:arm64 libboost-graph1.67-dev:arm64 libboost-graph-parallel1.67-dev:arm64 libboost-iostreams1.67-dev:arm64 libboost-locale1.67-dev:arm64 libboost-log1.67-dev:arm64 libboost-math1.67-dev:arm64 libboost-mpi1.67-dev:arm64 libboost-mpi-python1.67-dev:arm64 libboost-numpy1.67-dev:arm64 libboost-program-options1.67-dev:arm64 libboost-python1.67-dev:arm64 libboost-random1.67-dev:arm64 libboost-regex1.67-dev:arm64 libboost-serialization1.67-dev:arm64 libboost-signals1.67-dev:arm64 libboost-stacktrace1.67-dev:arm64 libboost-system1.67-dev:arm64 libboost-test1.67-dev:arm64 libboost-thread1.67-dev:arm64 libboost-timer1.67-dev:arm64 libboost-type-erasure1.67-dev:arm64 libboost-wave1.67-dev:arm64 libboost1.67-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 libcppunit-doc:arm64 libgd-tools krb5-doc krb5-user libhdf5-doc:arm64 libstdc++-9-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx fonts-liberation libidn2-0:arm64 ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64 libann0 libarchive-zip-perl libarchive13 libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64 libboost1.67-dev:arm64 libbrotli1 libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcairo2 libcdt5 libcgraph6 libclang1-9 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:arm64 libcppunit-dev:arm64 libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libcurl4 libdatrie1 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgd3 libgfortran5:arm64 libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103:arm64 libhdf5-cpp-103:arm64 libhdf5-dev:arm64 libice6 libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjbig0 libjpeg62-turbo libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp-dev:arm64 libjsoncpp1 libjsoncpp1:arm64 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm9 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsz2:arm64 libthai-data libthai0 libtiff5 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:arm64 sensible-utils ucf x11-common zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After this operation, 726 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10-20200211-1 [195 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-28 [195 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-1+b1 [62.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.16-1+b1 [263 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.34-2 [2787 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-10 [2638 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-28 [1697 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-28 [10.7 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.16.3-1 [1628 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.0-1+b1 [335 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.49+dfsg-1 [91.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-1 [226 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.67.0-2 [321 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.34.2-1 [127 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.16.3-1 [3673 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-28cross1 [195 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-28cross1 [6542 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-28cross1 [191 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10-20200211-1cross1 [191 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.29-9cross1 [1242 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10-20200211-1cross1 [34.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10-20200211-1cross1 [87.2 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10-20200211-1cross1 [22.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10-20200211-1cross1 [8540 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-28cross1 [347 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10-20200211-1cross1 [125 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10-20200211-1cross1 [285 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10-20200211-1cross1 [409 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10-20200211-1cross1 [122 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-28cross1 [886 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-28cross1 [6914 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.4.8-1cross1 [1126 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.29-9cross1 [2263 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-28cross1 [1636 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-28cross1 [7124 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.88 [17.4 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-13 [513 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm9 amd64 1:9.0.1-8 [15.0 MB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-9 amd64 1:9.0.1-8 [6719 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libxapian30 amd64 1.4.14-2 [1085 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 doxygen amd64 1.8.16-2 [9455 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-2 [292 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.1-2 [392 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-2+b1 [347 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-2+b1 [405 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 libcdt5 amd64 2.42.2-3+b1 [60.9 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 libcgraph6 amd64 2.42.2-3+b1 [85.2 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-5 [137 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.8-1 [298 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.8-1 [756 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.13.1-5 [109 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.13.1-5 [99.3 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libltdl7 amd64 2.4.6-13 [390 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libdatrie1 amd64 0.2.12-3 [39.5 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 libpango-1.0-0 amd64 1.42.4-8 [186 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.13-11 [80.9 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.4-1 [1360 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8 [68.2 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8 [55.7 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 libpathplan4 amd64 2.42.2-3+b1 [64.1 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 libgvc6 amd64 2.42.2-3+b1 [693 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 libgvpr2 amd64 2.42.2-3+b1 [211 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-3+b1 [220 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 graphviz amd64 2.42.2-3+b1 [632 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main arm64 hdf5-helpers arm64 1.10.4+repack-10 [35.2 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10-20200211-1 [34.6 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.10-10 [89.7 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.29-10 [2456 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main arm64 libaec0 arm64 1.0.4-1 [19.8 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main arm64 libsz2 arm64 1.0.4-1 [6736 B] Get:172 http://debian.oregonstate.edu/debian unstable/main arm64 libaec-dev arm64 1.0.4-1 [18.2 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-28 [354 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10-20200211-1 [8848 B] Get:175 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10-20200211-1 [89.3 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10-20200211-1 [23.2 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10-20200211-1 [126 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10-20200211-1 [293 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10-20200211-1 [449 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10-20200211-1 [123 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-28 [884 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.4.19-1 [1055 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.10-10 [111 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.29-10 [2274 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-28 [1656 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.67-dev arm64 1.67.0-17 [8389 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.67.0.2+b1 [4484 B] Get:188 http://debian.oregonstate.edu/debian unstable/main arm64 libcppunit-1.15-0 arm64 1.15.1-2 [139 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main arm64 libcppunit-dev arm64 1.15.1-2 [200 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 10-20200211-1 [325 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1.2 [87.8 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-103 arm64 1.10.4+repack-10 [1168 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-cpp-103 arm64 1.10.4+repack-10 [132 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1.2 [208 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:1.5.2-2+b1 [186 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-dev arm64 1.10.4+repack-10 [2683 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp1 arm64 1.7.4-3.1 [71.7 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main arm64 libjsoncpp-dev arm64 1.7.4-3.1 [88.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 153 MB in 2s (67.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12785 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:arm64. Preparing to unpack .../007-gcc-10-base_10-20200211-1_arm64.deb ... Unpacking gcc-10-base:arm64 (10-20200211-1) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../008-gcc-9-base_9.2.1-28_arm64.deb ... Unpacking gcc-9-base:arm64 (9.2.1-28) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../009-libncurses6_6.1+20191019-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20191019-1) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../010-libprocps8_2%3a3.3.16-1+b1_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.16-1+b1) ... Selecting previously unselected package procps. Preparing to unpack .../011-procps_2%3a3.3.16-1+b1_amd64.deb ... Unpacking procps (2:3.3.16-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../012-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../013-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../014-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../015-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../016-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../017-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (10-20200211-1cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-28) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up libgvpr2:amd64 (2.42.2-3+b1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up procps (2:3.3.16-1+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up build-essential (12.8) ... Setting up libcurl4:amd64 (7.67.0-2) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libharfbuzz0b:amd64 (2.6.4-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libllvm9:amd64 (1:9.0.1-8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libubsan1-arm64-cross (10-20200211-1cross1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libclang1-9 (1:9.0.1-8) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-28cross1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up doxygen (1.8.16-2) ... Setting up gcc-9-aarch64-linux-gnu (9.2.1-28cross1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.16.3-1) ... Setting up libstdc++-9-dev-arm64-cross (9.2.1-28cross1) ... Setting up libfontconfig1:amd64 (2.13.1-2+b1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up fontconfig (2.13.1-2+b1) ... Regenerating fonts cache... done. Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up po-debconf (1.0.21) ... Setting up libpango-1.0-0:amd64 (1.42.4-8) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.16.0-4) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-28cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libgvc6 (2.42.2-3+b1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up graphviz (2.42.2-3+b1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libcrypt1:arm64 (1:4.4.10-10) ... Setting up libgcc-s1:arm64 (10-20200211-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.29-10) ... Setting up libcrypt-dev:arm64 (1:4.4.10-10) ... Setting up libc6-dev:arm64 (2.29-10) ... Setting up libstdc++6:arm64 (10-20200211-1) ... Setting up liblsan0:arm64 (10-20200211-1) ... Setting up libitm1:arm64 (10-20200211-1) ... Setting up libjsoncpp1:arm64 (1.7.4-3.1) ... Setting up libtsan0:arm64 (10-20200211-1) ... Setting up libcppunit-1.15-0:arm64 (1.15.1-2) ... Setting up libjsoncpp-dev:arm64 (1.7.4-3.1) ... Setting up debhelper (12.9) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1.2) ... Setting up libgomp1:arm64 (10-20200211-1) ... Setting up libaec0:arm64 (1.0.4-1) ... Setting up libasan5:arm64 (9.2.1-28) ... Setting up libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Setting up libjpeg62-turbo-dev:arm64 (1:1.5.2-2+b1) ... Setting up libatomic1:arm64 (10-20200211-1) ... Setting up libgfortran5:arm64 (10-20200211-1) ... Setting up libubsan1:arm64 (10-20200211-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1.2) ... Setting up libcppunit-dev:arm64 (1.15.1-2) ... Setting up libsz2:arm64 (1.0.4-1) ... Setting up libaec-dev:arm64 (1.0.4-1) ... Setting up libgcc-9-dev:arm64 (9.2.1-28) ... Setting up libhdf5-103:arm64 (1.10.4+repack-10) ... Setting up libstdc++-9-dev:arm64 (9.2.1-28) ... Setting up libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Setting up libhdf5-dev:arm64 (1.10.4+repack-10) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libboost1.67-dev:arm64 (1.67.0-17) ... Setting up libboost-dev:arm64 (1.67.0.2+b1) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.34-2 dpkg-dev_1.19.7 g++-9_9.2.1-28 gcc-8_8.3.0-28 gcc-9_9.2.1-28 libc6-dev_2.29-10 libstdc++-9-dev_9.2.1-28 libstdc++-9-dev-arm64-cross_9.2.1-28cross1 libstdc++6_10-20200211-1 libstdc++6-arm64-cross_10-20200211-1cross1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-2 binutils-aarch64-linux-gnu_2.34-2 binutils-common_2.34-2 binutils-x86-64-linux-gnu_2.34-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-28 cpp-9_9.2.1-28 cpp-9-aarch64-linux-gnu_9.2.1-28cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 doxygen_1.8.16-2 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig_2.13.1-2+b1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1 g++-9_9.2.1-28 g++-9-aarch64-linux-gnu_9.2.1-28cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200211-1 gcc-10-cross-base_10-20200211-1cross1 gcc-8_8.3.0-28 gcc-8-base_8.3.0-28 gcc-9_9.2.1-28 gcc-9-aarch64-linux-gnu_9.2.1-28cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-28cross1 gcc-9-base_9.2.1-28 gcc-9-cross-base_9.2.1-28cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 graphviz_2.42.2-3+b1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hdf5-helpers_1.10.4+repack-10 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libann0_1.1.2+doc-7 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-28 libasan5-arm64-cross_9.2.1-28cross1 libatomic1_10-20200211-1 libatomic1-arm64-cross_10-20200211-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-2 libblkid1_2.34-0.1 libboost-dev_1.67.0.2+b1 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-arm64-cross_2.29-9cross1 libc6-dev_2.29-10 libc6-dev-arm64-cross_2.29-9cross1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200211-1 libcdt5_2.42.2-3+b1 libcgraph6_2.42.2-3+b1 libclang1-9_1:9.0.1-8 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcppunit-1.15-0_1.15.1-2 libcppunit-dev_1.15.1-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-2 libctf0_2.34-2 libcurl4_7.67.0-2 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2+b1 libfreetype6_2.10.1-2 libfribidi0_1.0.8-2 libgcc-8-dev_8.3.0-28 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tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 x11-common_1:7.7+20 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gatb-core Binary: gatb-core, libgatbcore3, libgatbcore-dev, gatb-core-testdata Architecture: any all Version: 1.4.1+git20191209.9398f28+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Nadiya Sitdykova , Andreas Tille Homepage: https://github.com/GATB/gatb-core Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/gatb-core Vcs-Git: https://salsa.debian.org/med-team/gatb-core.git Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz Package-List: 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check signature: No public key dpkg-source: warning: failed to verify signature on ./gatb-core_1.4.1+git20191209.9398f28+dfsg-3.dsc dpkg-source: info: extracting gatb-core in /<> dpkg-source: info: unpacking gatb-core_1.4.1+git20191209.9398f28+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.1+git20191209.9398f28+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-dcf4cd05-e952-4025-ba03-185235f3d49e SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.1+git20191209.9398f28+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules build-arch dh build-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=aarch64 -DCMAKE_C_COMPILER=aarch64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=aarch64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/aarch64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu ../gatb-core -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- Options: -std=c++11 -Wno-invalid-offsetof -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libpthread.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.so;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.10.4") -- HDF5_LIBRARIES="/usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/aarch64-linux-gnu/libpthread.so/usr/lib/aarch64-linux-gnu/libsz.so/usr/lib/aarch64-linux-gnu/libz.so/usr/lib/aarch64-linux-gnu/libdl.so/usr/lib/aarch64-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libpthread.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.so;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.10.4") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.8.16") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-aarch64-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -a cd obj-aarch64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<>/gatb-core -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src /<>/obj-aarch64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= Scanning dependencies of target gatbcore-dynamic make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeNumeric()’: /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:707:24: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 707 | snprintf(temp,200,"%llu",value); | ~~~^ ~~~~~ | | | | | u_int64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta()’: /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:727:24: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 727 | snprintf(temp,200,"%llu",value); | ~~~^ ~~~~~ | | | | | u_int64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta2()’: /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:746:24: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 746 | snprintf(temp,200,"%llu",value); | ~~~^ ~~~~~ | | | | | u_int64_t {aka long unsigned int} | long long unsigned int | %lu [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 128]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 32]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 64]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 96]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 42%] Linking CXX shared library ../lib/None/libgatbcore.so cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o 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CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 42%] Built target gatbcore-dynamic make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src /<>/obj-aarch64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp [ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeNumeric()’: /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:707:24: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 707 | snprintf(temp,200,"%llu",value); | ~~~^ ~~~~~ | | | | | u_int64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta()’: /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:727:24: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 727 | snprintf(temp,200,"%llu",value); | ~~~^ ~~~~~ | | | | | u_int64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta2()’: /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:746:24: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 746 | snprintf(temp,200,"%llu",value); | ~~~^ ~~~~~ | | | | | u_int64_t {aka long unsigned int} | long long unsigned int | %lu [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with long unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:839:29: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 839 | printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", | ~~~~~^ | | | long long unsigned int | %12lu 840 | totalsizeBitset, 100*(float)totalsizeBitset/totalsize); | ~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 128]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 32]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 64]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 96]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:122:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 122 | fprintf(histo2Dfile,"\t%6lli", _histogram->get2D(ii,jj)); | ~~~~^ | | | long long int | %6li /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:137:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 137 | fprintf(histo1Dfile,"%i\t%lli",ii,_histogram->get(ii)); | ~~~^ | | | long long int | %li [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 86%] Linking CXX static library ../lib/None/libgatbcore.a cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-ar qc ../lib/None/libgatbcore.a CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o 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CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o /usr/bin/aarch64-linux-gnu-ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 86%] Built target gatbcore-static make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/test/unit /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test/unit /<>/obj-aarch64-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= Scanning dependencies of target gatb-core-cppunit make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 86%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestBank.cpp [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestLeon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/test/unit/src/bank/TestLeon.cpp:32: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestSequence.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -c /<>/gatb-core/test/unit/src/bcalm/TestBcalm.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDSK.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDebloom.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmer.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmerBank.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp:27: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -c /<>/gatb-core/test/unit/src/main.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -c /<>/gatb-core/test/unit/src/system/TestSystem.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestBag.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestCollection.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestContainer.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestIterable.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -c /<>/gatb-core/test/unit/src/tools/designpattern/TestIterators.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -c /<>/gatb-core/test/unit/src/tools/math/TestMath.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -c /<>/gatb-core/test/unit/src/tools/misc/TestMisc.cpp [ 96%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -c /<>/gatb-core/test/unit/src/tools/storage/TestStorage.cpp [ 96%] Linking CXX executable ../../bin/None/gatb-core-cppunit cd /<>/obj-aarch64-linux-gnu/test/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-core-cppunit.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libpthread.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.so /usr/lib/aarch64-linux-gnu/libm.so /usr/lib/aarch64-linux-gnu/libcppunit.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target gatb-core-cppunit make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tools /<>/obj-aarch64-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake --color= Scanning dependencies of target leon make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 96%] Building CXX object tools/CMakeFiles/leon.dir/leon.cpp.o cd /<>/obj-aarch64-linux-gnu/tools && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/leon.dir/leon.cpp.o -c /<>/gatb-core/tools/leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/tools/leon.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 97%] Linking CXX executable ../bin/None/leon cd /<>/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libpthread.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.so /usr/lib/aarch64-linux-gnu/libm.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 97%] Built target leon make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tools /<>/obj-aarch64-linux-gnu/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake --color= Scanning dependencies of target dbginfo make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 98%] Building CXX object tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /<>/obj-aarch64-linux-gnu/tools && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /<>/gatb-core/tools/dbginfo.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/tools/dbginfo.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li [ 98%] Linking CXX executable ../bin/None/dbginfo cd /<>/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libpthread.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.so /usr/lib/aarch64-linux-gnu/libm.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 98%] Built target dbginfo make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tools /<>/obj-aarch64-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake --color= Scanning dependencies of target dbgh5 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [100%] Building CXX object tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o cd /<>/obj-aarch64-linux-gnu/tools && /usr/bin/aarch64-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-aarch64-linux-gnu/include -I/<>/obj-aarch64-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /<>/gatb-core/tools/dbgh5.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/tools/dbgh5.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:535:33: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 535 | printf("bit array of size %lli: \n",_size); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:539:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 539 | printf(" (%llu) ",ii); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:16: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ ~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:548:24: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wformat=] 548 | printf("%llu : %lli, ",ii,_ranks[ii]); | ~~~^ | | | long long int | %li /<>/gatb-core/tools/dbgh5.cpp: In function ‘void sendEmail(gatb::core::tools::misc::IProperties*, gatb::core::tools::misc::IProperties*)’: /<>/gatb-core/tools/dbgh5.cpp:127:13: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 127 | ::system (cmd.str().c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable ../bin/None/dbgh5 cd /<>/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libpthread.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.so /usr/lib/aarch64-linux-gnu/libm.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target dbgh5 make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/thirdparty /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/thirdparty /<>/obj-aarch64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= Scanning dependencies of target thirdparty_copy make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/obj-aarch64-linux-gnu/include/None/json cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/obj-aarch64-linux-gnu/include/None/BooPHF cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core/thirdparty/BooPHF/BooPHF.h /<>/obj-aarch64-linux-gnu/include/None/BooPHF/ cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core/thirdparty/json/json.hpp /<>/obj-aarch64-linux-gnu/include/None/json/ make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target thirdparty_copy make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=gatb-core create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_testroot -a -O--sourcedirectory=gatb-core dh_prep -a -O--sourcedirectory=gatb-core dh_auto_install -a -O--sourcedirectory=gatb-core cd obj-aarch64-linux-gnu && make -j1 install DESTDIR=/<>/gatb-core-1.4.1\+git20191209.9398f28\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<>/gatb-core -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/src /<>/obj-aarch64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/gatbcore-dynamic.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 42%] Built target 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/test/unit /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/test/unit /<>/obj-aarch64-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/unit/CMakeFiles/gatb-core-cppunit.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target gatb-core-cppunit make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tools /<>/obj-aarch64-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tools/CMakeFiles/leon.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 97%] Built target leon make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tools /<>/obj-aarch64-linux-gnu/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tools/CMakeFiles/dbginfo.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 98%] Built target dbginfo make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/tools /<>/obj-aarch64-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tools/CMakeFiles/dbgh5.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target dbgh5 make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/thirdparty /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/thirdparty /<>/obj-aarch64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/obj-aarch64-linux-gnu/include/None/json cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/obj-aarch64-linux-gnu/include/None/BooPHF cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core/thirdparty/BooPHF/BooPHF.h /<>/obj-aarch64-linux-gnu/include/None/BooPHF/ cd /<>/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core/thirdparty/json/json.hpp /<>/obj-aarch64-linux-gnu/include/None/json/ make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target thirdparty_copy make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/optionsparser2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/optionsparser1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/observer1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading8.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading7.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading6.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading5.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading3.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators9.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators8.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators7.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators6.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators5.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators3.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/ToyTool.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage9.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage8.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage7.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage6.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage5.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage3.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage10.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/protos -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/protos/histo2D.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/protos/MicroSNP.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer9.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer8.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer7.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer6.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer5.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer3.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer17.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer16.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer15.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer14.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer13.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer12.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer11.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer10.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn9.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn8.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn7.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn6.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn5.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn3.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn27.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn26.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn25.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn24.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn23.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn22.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn21.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn20.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn19.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn18.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn17.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn16.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn15.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn14.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn13.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn12.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn11.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn10.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank9.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank8.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank7.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank6.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank5.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank3.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank28.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank27.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank26.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank25.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank24.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank23.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank22.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank21.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank20.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank2.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank19.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank18.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank17.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank16.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank15.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank14.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank13.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank12.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank11.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank10.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/README.md -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/Makefile -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/CMakeLists.txt -- Installing: /<>/debian/tmp/usr/./README.txt -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.a -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 -- Installing: /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.so -- Installing: /<>/debian/tmp/usr/include -- Installing: /<>/debian/tmp/usr/include/gatb -- Installing: /<>/debian/tmp/usr/include/gatb/tools -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/Integer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/MapMPHF.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/IteratorFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/IterableHelpers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/Hash16.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/ContainerSet.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BooPHF.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BagFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Iterable.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Container.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Collection.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Bag.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/template -- Installing: /<>/debian/tmp/usr/include/gatb/system -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/System.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/types.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/ITime.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/IThread.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/IMemory.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/Exception.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Model.pri -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/api -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/gatb_core.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/api -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2 -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/ographBin.h -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/ograph.h -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/logging.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/binSeq.h -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h -- Installing: /<>/debian/tmp/usr/include/gatb/bank -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api/IBank.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /<>/debian/tmp/usr/test/gatb-core-cppunit -- Set runtime path of "/<>/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /<>/debian/tmp/usr/test//db -- Installing: /<>/debian/tmp/usr/test//db/sample2.fa -- Installing: /<>/debian/tmp/usr/test//db/sample1.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/sample1.fa -- Installing: /<>/debian/tmp/usr/test//db/sample.fastq.gz -- Installing: /<>/debian/tmp/usr/test//db/sample.fastq -- Installing: /<>/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/reads2.fa -- Installing: /<>/debian/tmp/usr/test//db/reads1_list_ids.txt -- Installing: /<>/debian/tmp/usr/test//db/reads1.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/reads1.fa -- Installing: /<>/debian/tmp/usr/test//db/query.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/query.fa -- Installing: /<>/debian/tmp/usr/test//db/microsnp.fa -- Installing: /<>/debian/tmp/usr/test//db/leon2.fastq.leon-ref -- Installing: /<>/debian/tmp/usr/test//db/leon2.fastq -- Installing: /<>/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /<>/debian/tmp/usr/test//db/leon1.fastq -- Installing: /<>/debian/tmp/usr/test//db/celegans_reads.h5 -- Installing: /<>/debian/tmp/usr/test//db/album.txt -- Installing: /<>/debian/tmp/usr/test//db/README.md -- Installing: /<>/debian/tmp/usr/bin/dbgh5 -- Set runtime path of "/<>/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /<>/debian/tmp/usr/bin/dbginfo -- Set runtime path of "/<>/debian/tmp/usr/bin/dbginfo" to "" -- Installing: /<>/debian/tmp/usr/bin/leon -- Set runtime path of "/<>/debian/tmp/usr/bin/leon" to "" -- Installing: /<>/debian/tmp/usr/include/BooPHF -- Installing: /<>/debian/tmp/usr/include/BooPHF/BooPHF.h make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev gatb-core/cmake usr/lib \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libgatbcore3/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.a debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.so debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 debian/libgatbcore3/usr/lib/aarch64-linux-gnu PKGDEV=libgatbcore-dev PKGSHL=libgatbcore3 install -d -m 755 debian/libgatbcore-dev/usr mv debian/tmp/usr/include debian/libgatbcore-dev/usr install -d -m 755 debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mv gatb-core/cmake debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mkdir -p debian/gatb-core/usr/lib/gatb-core dh_install -a make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=gatb-core dh_installchangelogs -a -O--sourcedirectory=gatb-core dh_installexamples -a -O--sourcedirectory=gatb-core dh_installman -a -O--sourcedirectory=gatb-core dh_installinit -a -O--sourcedirectory=gatb-core dh_installsystemduser -a -O--sourcedirectory=gatb-core dh_perl -a -O--sourcedirectory=gatb-core dh_link -a -O--sourcedirectory=gatb-core dh_strip_nondeterminism -a -O--sourcedirectory=gatb-core dh_compress -a -O--sourcedirectory=gatb-core dh_fixperms -a -O--sourcedirectory=gatb-core dh_missing -a -O--sourcedirectory=gatb-core dh_dwz -a -O--sourcedirectory=gatb-core dh_strip -a -O--sourcedirectory=gatb-core dh_makeshlibs -a -O--sourcedirectory=gatb-core dh_shlibdeps -a -O--sourcedirectory=gatb-core dpkg-shlibdeps: warning: symbol deflateInit_ used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tset_precision used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzprintf used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzwrite used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_join used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dwrite used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Fclose used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_INT_g used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Aget_space used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 58 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--sourcedirectory=gatb-core dh_gencontrol -a -O--sourcedirectory=gatb-core dh_md5sums -a -O--sourcedirectory=gatb-core dh_builddeb -a -O--sourcedirectory=gatb-core dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb'. dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb'. dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb'. dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-02-19T03:29:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.changes: --------------------------------------------------------- Format: 1.8 Date: Mon, 17 Feb 2020 15:41:58 +0100 Source: gatb-core Binary: gatb-core gatb-core-dbgsym libgatbcore-dev libgatbcore3 libgatbcore3-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.4.1+git20191209.9398f28+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: gatb-core - Genome Analysis Toolbox with de-Bruijn graph libgatbcore-dev - development library of the Genome Analysis Toolbox libgatbcore3 - dynamic library of the Genome Analysis Toolbox Changes: gatb-core (1.4.1+git20191209.9398f28+dfsg-3) unstable; urgency=medium . * Team upload. * add multi-arch hints Checksums-Sha1: b318b4d46a2165d924f99827bf0446787649e881 46875404 gatb-core-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb f25d5b3d36db8c8743394407105f974b9ba217a5 9361 gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.buildinfo fd67d394092d5dc90e08d981df0ebefcdcd30ecb 1451800 gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb f107ef39377dcc8435deb423d8b5d9af4ea6d31d 3983840 libgatbcore-dev_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb 81d56980be3a3fb2690989b0c7353e555ad5bd54 51473568 libgatbcore3-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb 5e3f5792bda64a3c4c7141826159fcc732dea45e 1552660 libgatbcore3_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb Checksums-Sha256: 70c2ece8f82a4ba3278c75f9eb4fa6749627d484a72573de72630740ab53546f 46875404 gatb-core-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb f126f947a644650bcd542e2f56be0ace039c5d2c00819d78c2e8427196451a39 9361 gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.buildinfo 1ef275306dee54bf18d1530c69a254cd5925de6cb5d7b102397b91ea7a0396d6 1451800 gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb 43436fbd7101a98a757170ca1ed3b3cf68195650659bbc880ebc690593b5d234 3983840 libgatbcore-dev_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb e2a9fc944b949188e5585322aee8f04423eed05d560a6b7e9bc511fe47ef2c76 51473568 libgatbcore3-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb cc7360b33f6fb95bb6c2a9c631390b9c3d5a0065b83820aa335bf390462f2aa0 1552660 libgatbcore3_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb Files: 42d3f9e0299adc5b82a9120a42cd3727 46875404 debug optional gatb-core-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb 27e4159182ba95686479ac72e17c15c6 9361 science optional gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.buildinfo c84f7f8adf2f41bcb9b324c22e4a994f 1451800 science optional gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb ae4c79b90066812d8a8f406a3a8d1882 3983840 libdevel optional libgatbcore-dev_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb 2cf1a93d9dddcff7cf58caefaf890c52 51473568 debug optional libgatbcore3-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb 557fb7c6fcd7bc0f4eae3f9d3bde069c 1552660 libs optional libgatbcore3_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: gatb-core Binary: gatb-core libgatbcore3 libgatbcore-dev gatb-core-testdata Architecture: arm64 Version: 1.4.1+git20191209.9398f28+dfsg-3 Checksums-Md5: 42d3f9e0299adc5b82a9120a42cd3727 46875404 gatb-core-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb 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2.34-2), binutils-common (= 2.34-2), binutils-x86-64-linux-gnu (= 2.34-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), cmake (= 3.16.3-1), cmake-data (= 3.16.3-1), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-28), cpp-9 (= 9.2.1-28), d-shlibs (= 0.88), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.9), debian-archive-keyring (= 2019.1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), doxygen (= 1.8.16-2), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), fontconfig (= 2.13.1-2+b1), fontconfig-config (= 2.13.1-2), fonts-dejavu-core (= 2.37-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-28), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200211-1), gcc-8 (= 8.3.0-28), gcc-8-base (= 8.3.0-28), gcc-9 (= 9.2.1-28), gcc-9-base (= 9.2.1-28), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), gpgv (= 2.2.19-1), graphviz (= 2.42.2-3+b1), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.9-3+b1), hdf5-helpers (= 1.10.4+repack-10), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libann0 (= 1.1.2+doc-7), libapt-pkg5.0 (= 1.8.4), libarchive-zip-perl (= 1.67-1), libarchive13 (= 3.4.0-1+b1), libasan5 (= 9.2.1-28), libatomic1 (= 10-20200211-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.34-2), libblkid1 (= 2.34-0.1), libboost-dev (= 1.67.0.2+b1), libboost1.67-dev (= 1.67.0-17), libbrotli1 (= 1.0.7-6), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-10), libc-dev-bin (= 2.29-10), libc6 (= 2.29-10), libc6-dev (= 2.29-10), libcairo2 (= 1.16.0-4), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 10-20200211-1), libcdt5 (= 2.42.2-3+b1), libcgraph6 (= 2.42.2-3+b1), libclang1-9 (= 1:9.0.1-8), libcom-err2 (= 1.45.5-2), libcppunit-1.15-0 (= 1.15.1-2), libcppunit-dev (= 1.15.1-2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10), libcrypt1 (= 1:4.4.10-10), libctf-nobfd0 (= 2.34-2), libctf0 (= 2.34-2), libcurl4 (= 7.67.0-2), libdatrie1 (= 0.2.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 12.9), libdpkg-perl (= 1.19.7), libedit2 (= 3.1-20191231-1), libelf1 (= 0.176-1.1), libexpat1 (= 2.2.9-1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-3), libfile-stripnondeterminism-perl (= 1.6.3-2), libfontconfig1 (= 2.13.1-2+b1), libfreetype6 (= 2.10.1-2), libfribidi0 (= 1.0.8-2), libgcc-8-dev (= 8.3.0-28), libgcc-9-dev (= 9.2.1-28), libgcc-s1 (= 10-20200211-1), libgcc1 (= 1:10-20200211-1), libgcrypt20 (= 1.8.5-3), libgd3 (= 2.2.5-5.2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgfortran5 (= 10-20200211-1), libglib2.0-0 (= 2.62.4-2), libgmp10 (= 2:6.2.0+dfsg-3), libgnutls30 (= 3.6.12-2), libgomp1 (= 10-20200211-1), libgpg-error0 (= 1.37-1), libgraphite2-3 (= 1.3.13-11), libgssapi-krb5-2 (= 1.17-6), libgts-0.7-5 (= 0.7.6+darcs121130-4+b1), libgvc6 (= 2.42.2-3+b1), libgvpr2 (= 2.42.2-3+b1), libharfbuzz0b (= 2.6.4-1), libhdf5-103 (= 1.10.4+repack-10), libhdf5-cpp-103 (= 1.10.4+repack-10), libhdf5-dev (= 1.10.4+repack-10), libhogweed5 (= 3.5.1+really3.5.1-2), libice6 (= 2:1.0.9-2), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-2), libisl22 (= 0.22.1-1), libitm1 (= 10-20200211-1), libjbig0 (= 2.1-3.1+b2), libjpeg62-turbo (= 1:1.5.2-2+b1), libjpeg62-turbo-dev (= 1:1.5.2-2+b1), libjsoncpp-dev (= 1.7.4-3.1), libjsoncpp1 (= 1.7.4-3.1), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), liblab-gamut1 (= 2.42.2-3+b1), libldap-2.4-2 (= 2.4.49+dfsg-1), libldap-common (= 2.4.49+dfsg-1), libllvm9 (= 1:9.0.1-8), liblsan0 (= 10-20200211-1), libltdl7 (= 2.4.6-13), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-28), libncurses6 (= 6.1+20191019-1), libncursesw6 (= 6.1+20191019-1), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1), libp11-kit0 (= 0.23.20-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpango-1.0-0 (= 1.42.4-8), libpangocairo-1.0-0 (= 1.42.4-8), libpangoft2-1.0-0 (= 1.42.4-8), libpathplan4 (= 2.42.2-3+b1), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libpixman-1-0 (= 0.36.0-1), libpng16-16 (= 1.6.37-2), libprocps8 (= 2:3.3.16-1+b1), libpsl5 (= 0.20.2-2), libquadmath0 (= 10-20200211-1), librhash0 (= 1.3.9-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1+b1), libsemanage-common (= 3.0-1), libsemanage1 (= 3.0-1), libsepol1 (= 3.0-1), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-28), libstdc++6 (= 10-20200211-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 244.3-1), libsz2 (= 1.0.4-1), libtasn1-6 (= 4.16.0-2), libthai-data (= 0.1.28-3), libthai0 (= 0.1.28-3), libtiff5 (= 4.1.0+git191117-2), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-13), libtsan0 (= 10-20200211-1), libubsan1 (= 10-20200211-1), libuchardet0 (= 0.0.6-3), libudev1 (= 244.3-1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libuv1 (= 1.34.2-1), libwebp6 (= 0.6.1-2+b1), libx11-6 (= 2:1.6.8-1), libx11-data (= 2:1.6.8-1), libxapian30 (= 1.4.14-2), libxau6 (= 1:1.0.8-1+b2), libxaw7 (= 2:1.0.13-1+b2), libxcb-render0 (= 1.13.1-5), libxcb-shm0 (= 1.13.1-5), libxcb1 (= 1.13.1-5), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.3-1+b2), libxml2 (= 2.9.4+dfsg1-8), libxmu6 (= 2:1.1.2-2+b3), libxpm4 (= 1:3.5.12-1), libxrender1 (= 1:0.9.10-1), libxt6 (= 1:1.1.5-1+b3), libz3-4 (= 4.8.7-4), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.19-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), passwd (= 1:4.8.1-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), procps (= 2:3.3.16-1+b1), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1), tar (= 1.30+dfsg-6+b1), ucf (= 3.0038+nmu1), util-linux (= 2.34-0.1), x11-common (= 1:7.7+20), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1.2), zlib1g-dev (= 1:1.2.11.dfsg-1.2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1581950518" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ gatb-core-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb ----------------------------------------------------------- new Debian package, version 2.0. size 46875404 bytes: control archive=712 bytes. 512 bytes, 12 lines control 405 bytes, 4 lines md5sums Package: gatb-core-dbgsym Source: gatb-core Version: 1.4.1+git20191209.9398f28+dfsg-3 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 51468 Depends: gatb-core (= 1.4.1+git20191209.9398f28+dfsg-3) Section: debug Priority: optional Description: debug symbols for gatb-core Build-Ids: 17f1a4784ad83a363a890787140cbb1b83fb0a46 1eb981dfe0fee10e8df791500343ed6e9cd79fd4 4806f96c68f422d0a835a344e4e51e695b59403d drwxr-xr-x root/root 0 2020-02-17 14:41 ./ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.build-id/17/ -rw-r--r-- root/root 4778584 2020-02-17 14:41 ./usr/lib/debug/.build-id/17/f1a4784ad83a363a890787140cbb1b83fb0a46.debug drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.build-id/1e/ -rw-r--r-- root/root 21796904 2020-02-17 14:41 ./usr/lib/debug/.build-id/1e/b981dfe0fee10e8df791500343ed6e9cd79fd4.debug drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.build-id/48/ -rw-r--r-- root/root 21731288 2020-02-17 14:41 ./usr/lib/debug/.build-id/48/06f96c68f422d0a835a344e4e51e695b59403d.debug drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.dwz/aarch64-linux-gnu/ -rw-r--r-- root/root 4380208 2020-02-17 14:41 ./usr/lib/debug/.dwz/aarch64-linux-gnu/gatb-core.debug drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-02-17 14:41 ./usr/share/doc/gatb-core-dbgsym -> gatb-core gatb-core_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb ---------------------------------------------------- new Debian package, version 2.0. size 1451800 bytes: control archive=1188 bytes. 1037 bytes, 21 lines control 553 bytes, 9 lines md5sums Package: gatb-core Version: 1.4.1+git20191209.9398f28+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 11112 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhdf5-103, libstdc++6 (>= 9), zlib1g (>= 1:1.2.6) Section: science Priority: optional Homepage: https://github.com/GATB/gatb-core Description: Genome Analysis Toolbox with de-Bruijn graph The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/bin/ -rwxr-xr-x root/root 4905576 2020-02-17 14:41 ./usr/bin/dbgh5 -rwxr-xr-x root/root 4909656 2020-02-17 14:41 ./usr/bin/dbginfo -rwxr-xr-x root/root 1505768 2020-02-17 14:41 ./usr/bin/leon drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/gatb-core/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/doc/gatb-core/ -rw-r--r-- root/root 3802 2019-12-09 17:18 ./usr/share/doc/gatb-core/README.txt -rw-r--r-- root/root 1165 2020-02-17 14:41 ./usr/share/doc/gatb-core/changelog.Debian.gz -rw-r--r-- root/root 34732 2020-01-02 14:29 ./usr/share/doc/gatb-core/copyright drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/man/man1/ -rw-r--r-- root/root 1391 2020-02-17 14:41 ./usr/share/man/man1/dbgh5.1.gz -rw-r--r-- root/root 300 2020-02-17 14:41 ./usr/share/man/man1/dbginfo.1.gz -rw-r--r-- root/root 652 2020-02-17 14:41 ./usr/share/man/man1/leon.1.gz libgatbcore-dev_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb ---------------------------------------------------------- new Debian package, version 2.0. size 3983840 bytes: control archive=7892 bytes. 1139 bytes, 26 lines control 24147 bytes, 283 lines md5sums Package: libgatbcore-dev Source: gatb-core Version: 1.4.1+git20191209.9398f28+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 77458 Depends: libgatbcore3 (= 1.4.1+git20191209.9398f28+dfsg-3) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Description: development library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the static library and the header files of the gatb-core library. drwxr-xr-x root/root 0 2020-02-17 14:41 ./ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/BooPHF/ -rw-r--r-- root/root 33854 2020-02-17 14:41 ./usr/include/BooPHF/BooPHF.h drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/gatb/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/gatb/bank/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/gatb/bank/api/ -rw-r--r-- root/root 2480 2019-12-09 17:18 ./usr/include/gatb/bank/api/IAlphabet.hpp -rw-r--r-- root/root 7592 2019-12-09 17:18 ./usr/include/gatb/bank/api/IBank.hpp -rw-r--r-- root/root 11212 2019-12-09 17:18 ./usr/include/gatb/bank/api/Sequence.hpp drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/gatb/bank/impl/ -rw-r--r-- root/root 3647 2019-12-09 17:18 ./usr/include/gatb/bank/impl/AbstractBank.hpp -rw-r--r-- root/root 2453 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./usr/include/gatb/bank/impl/Banks.hpp drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/gatb/bcalm2/ -rw-r--r-- root/root 4030 2019-12-09 17:18 ./usr/include/gatb/bcalm2/ThreadPool.h -rw-r--r-- root/root 1436 2019-12-09 17:18 ./usr/include/gatb/bcalm2/bcalm_algo.hpp -rw-r--r-- root/root 5318 2019-12-09 17:18 ./usr/include/gatb/bcalm2/bglue_algo.hpp -rw-r--r-- root/root 1152 2019-12-09 17:18 ./usr/include/gatb/bcalm2/binSeq.h -rw-r--r-- root/root 175 2019-12-09 17:18 ./usr/include/gatb/bcalm2/logging.hpp -rw-r--r-- root/root 3031 2019-12-09 17:18 ./usr/include/gatb/bcalm2/ograph.h -rw-r--r-- root/root 1198 2019-12-09 17:18 ./usr/include/gatb/bcalm2/ographBin.h -rw-r--r-- root/root 19647 2019-12-09 17:18 ./usr/include/gatb/bcalm2/unionFind.hpp drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/gatb/debruijn/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/include/gatb/debruijn/api/ -rw-r--r-- root/root 2432 2019-12-09 17:18 ./usr/include/gatb/debruijn/api/IContainerNode.hpp 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2019-12-09 17:18 ./usr/share/doc/libgatbcore-dev/examples/tools/observer1.cpp -rw-r--r-- root/root 1503 2019-12-09 17:18 ./usr/share/doc/libgatbcore-dev/examples/tools/optionsparser1.cpp -rw-r--r-- root/root 749 2019-12-09 17:18 ./usr/share/doc/libgatbcore-dev/examples/tools/optionsparser2.cpp libgatbcore3-dbgsym_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb -------------------------------------------------------------- new Debian package, version 2.0. size 51473568 bytes: control archive=580 bytes. 456 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libgatbcore3-dbgsym Source: gatb-core Version: 1.4.1+git20191209.9398f28+dfsg-3 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 54415 Depends: libgatbcore3 (= 1.4.1+git20191209.9398f28+dfsg-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libgatbcore3 Build-Ids: 6680315af97dba0e3288f47f285746f0ed84e147 drwxr-xr-x root/root 0 2020-02-17 14:41 ./ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/debug/.build-id/66/ -rw-r--r-- root/root 55710392 2020-02-17 14:41 ./usr/lib/debug/.build-id/66/80315af97dba0e3288f47f285746f0ed84e147.debug drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-02-17 14:41 ./usr/share/doc/libgatbcore3-dbgsym -> libgatbcore3 libgatbcore3_1.4.1+git20191209.9398f28+dfsg-3_arm64.deb ------------------------------------------------------- new Debian package, version 2.0. size 1552660 bytes: control archive=1152 bytes. 1086 bytes, 25 lines control 229 bytes, 3 lines md5sums 63 bytes, 1 lines shlibs 65 bytes, 2 lines triggers Package: libgatbcore3 Source: gatb-core Version: 1.4.1+git20191209.9398f28+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 9917 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Description: dynamic library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the dynamic library. drwxr-xr-x root/root 0 2020-02-17 14:41 ./ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 10107184 2020-02-17 14:41 ./usr/lib/aarch64-linux-gnu/libgatbcore.so.3 drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-17 14:41 ./usr/share/doc/libgatbcore3/ -rw-r--r-- root/root 1165 2020-02-17 14:41 ./usr/share/doc/libgatbcore3/changelog.Debian.gz -rw-r--r-- root/root 34732 2020-01-02 14:29 ./usr/share/doc/libgatbcore3/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [585 B] Get:5 copy:/<>/apt_archive ./ Packages [674 B] Fetched 2222 B in 0s (108 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdata-parsebinary-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libjson-xs-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdata-parsebinary-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.19-1 [529 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-2 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.19-1 [889 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libberkeleydb-perl amd64 0.62-1+b1 [124 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.46-1 [223 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-parsebinary-perl all 0.31~dfsg-1 [77.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 4 [7148 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.067-1 [212 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3100-1 [39.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.21-1 [368 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.26-1 [27.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.43-1 [83.2 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-perl all 4.02000-2 [88.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008001-2 [331 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.53.0 [1314 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7949 kB in 0s (29.2 MB/s) Selecting previously unselected package readline-common. (Reading database ... 39183 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.19-1_amd64.deb ... Unpacking gpgconf (2.2.19-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.31.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.31.1-2) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.19-1_amd64.deb ... Unpacking gpg (2.2.19-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b2_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b2) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b2_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../10-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../11-libdevel-callchecker-perl_0.008-1+b1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../12-libparams-classify-perl_0.015-1+b2_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../13-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../14-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../15-libmodule-implementation-perl_0.09-1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../16-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../17-libvariable-magic-perl_0.62-1+b2_amd64.deb ... Unpacking libvariable-magic-perl (0.62-1+b2) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../18-libb-hooks-endofscope-perl_0.24-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1) ... Selecting previously unselected package libberkeleydb-perl:amd64. Preparing to unpack .../19-libberkeleydb-perl_0.62-1+b1_amd64.deb ... Unpacking libberkeleydb-perl:amd64 (0.62-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../20-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../21-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package liburi-perl. 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Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../28-libclass-xsaccessor-perl_1.19-3+b3_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b3) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../29-libclone-perl_0.43-2_amd64.deb ... Unpacking libclone-perl (0.43-2) ... Selecting previously unselected package libdata-parsebinary-perl. Preparing to unpack .../30-libdata-parsebinary-perl_0.31~dfsg-1_all.deb ... Unpacking libdata-parsebinary-perl (0.31~dfsg-1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../31-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../32-perl-openssl-defaults_4_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (4) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../33-libnet-ssleay-perl_1.88-2_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../34-libio-socket-ssl-perl_2.067-1_all.deb ... Unpacking libio-socket-ssl-perl (2.067-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../35-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../36-libtimedate-perl_2.3100-1_all.deb ... Unpacking libtimedate-perl (2.3100-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../37-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../38-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../39-libnet-dns-perl_1.21-1_all.deb ... Unpacking libnet-dns-perl (1.21-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../40-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../41-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../42-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../43-libipc-system-simple-perl_1.26-1_all.deb ... Unpacking libipc-system-simple-perl (1.26-1) ... Selecting previously unselected package libfile-basedir-perl. 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Selecting previously unselected package libimport-into-perl. Preparing to unpack .../50-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../51-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../52-libio-async-perl_0.75-1_all.deb ... Unpacking libio-async-perl (0.75-1) ... Selecting previously unselected package liblinux-epoll-perl. Preparing to unpack .../53-liblinux-epoll-perl_0.017-1_amd64.deb ... Unpacking liblinux-epoll-perl (0.017-1) ... Selecting previously unselected package libio-async-loop-epoll-perl. Preparing to unpack .../54-libio-async-loop-epoll-perl_0.20-1_all.deb ... Unpacking libio-async-loop-epoll-perl (0.20-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../55-libio-pty-perl_1%3a1.12-1_amd64.deb ... Unpacking libio-pty-perl (1:1.12-1) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../56-libipc-run-perl_20180523.0-2_all.deb ... Unpacking libipc-run-perl (20180523.0-2) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../57-libjson-perl_4.02000-2_all.deb ... Unpacking libjson-perl (4.02000-2) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../58-liblist-compare-perl_0.53-1_all.deb ... Unpacking liblist-compare-perl (0.53-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../59-liblist-moreutils-perl_0.416-1+b5_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b5) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../60-libmldbm-perl_2.05-2_all.deb ... Unpacking libmldbm-perl (2.05-2) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../61-librole-tiny-perl_2.001004-1_all.deb ... Unpacking librole-tiny-perl (2.001004-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../62-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../63-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../64-libmoo-perl_2.003006-1_all.deb ... Unpacking libmoo-perl (2.003006-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../65-libmoox-aliases-perl_0.001006-1_all.deb ... Unpacking libmoox-aliases-perl (0.001006-1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../66-libpackage-stash-perl_0.38-1_all.deb ... Unpacking libpackage-stash-perl (0.38-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../67-libsub-identify-perl_0.14-1+b2_amd64.deb ... Unpacking libsub-identify-perl (0.14-1+b2) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../68-libnamespace-clean-perl_0.27-1_all.deb ... Unpacking libnamespace-clean-perl (0.27-1) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../69-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../70-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../71-libtype-tiny-perl_1.008001-2_all.deb ... Unpacking libtype-tiny-perl (1.008001-2) ... Selecting previously unselected package libyaml-0-2:amd64. 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Setting up libberkeleydb-perl:amd64 (0.62-1+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.12-1) ... Setting up libclone-perl (0.43-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libsqlite3-0:amd64 (3.31.1-2) ... Setting up libfuture-perl (0.43-1) ... Setting up libyaml-libyaml-perl (0.81+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (4) ... Setting up libmldbm-perl (2.05-2) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-2+b1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 4004132 Build-Time: 2715 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 35 Job: gatb-core_1.4.1+git20191209.9398f28+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: gatb-core Package-Time: 2764 Source-Version: 1.4.1+git20191209.9398f28+dfsg-3 Space: 4004132 Status: successful Version: 1.4.1+git20191209.9398f28+dfsg-3 -------------------------------------------------------------------------------- Finished at 2020-02-19T03:29:46Z Build needed 00:46:04, 4004132k disk space