sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | gatb-core 1.4.2+dfsg-2 (mipsel) Fri, 12 Jun 2020 22:28:20 +0000 | +==============================================================================+ Package: gatb-core Version: 1.4.2+dfsg-2 Source Version: 1.4.2+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-5848ac17-973b-4483-bfe2-fd53a378c5ff' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-aqHd4l/resolver-SGoVLu' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-12-0759.41.pdiff [9714 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-12-1400.50.pdiff [33.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-12-2000.13.pdiff [14.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-12-0759.41.pdiff [6682 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-12-1400.50.pdiff [33.0 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-12-2000.13.pdiff [24.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-12-2000.13.pdiff [14.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-12-2000.13.pdiff [24.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [7935 kB] Fetched 8258 kB in 2s (5371 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3043 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.2+dfsg-2 (dsc) [2292 B] Get:2 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.2+dfsg-2 (tar) [2945 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.2+dfsg-2 (diff) [96.3 kB] Fetched 3043 kB in 0s (82.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gatb-core-aqHd4l/gatb-core-1.4.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-aqHd4l' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [451 B] Get:5 copy:/<>/apt_archive ./ Packages [539 B] Fetched 1947 B in 0s (80.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:mipsel intltool-debian libaec-dev:mipsel libaec0:mipsel libann0 libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.71-dev:mipsel libbrotli1 libbsd0 libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcairo2 libcdt5 libcgraph6 libclang1-9 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:mipsel libcppunit-dev:mipsel libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libdatrie1 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgd3 libgfortran5:mipsel libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:mipsel libhdf5-cpp-103-1:mipsel libhdf5-dev:mipsel libhdf5-fortran-102:mipsel libhdf5-hl-100:mipsel libhdf5-hl-cpp-100:mipsel libhdf5-hl-fortran-100:mipsel libice6 libicu67 libio-string-perl libjbig0 libjpeg62-turbo libjpeg62-turbo:mipsel libjpeg62-turbo-dev:mipsel libjsoncpp-dev:mipsel libjsoncpp1 libjsoncpp1:mipsel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm9 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libperl5.30 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsz2:mipsel libthai-data libthai0 libtiff5 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.30 po-debconf procps sensible-utils ucf x11-common zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation cmake-doc ninja-build gcc-9-locales cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mipsel-linux-gnu gcc-9-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc:mipsel libboost1.71-doc:mipsel libboost-atomic1.71-dev:mipsel libboost-chrono1.71-dev:mipsel libboost-container1.71-dev:mipsel libboost-context1.71-dev:mipsel libboost-contract1.71-dev:mipsel libboost-coroutine1.71-dev:mipsel libboost-date-time1.71-dev:mipsel libboost-exception1.71-dev:mipsel libboost-fiber1.71-dev:mipsel libboost-filesystem1.71-dev:mipsel libboost-graph1.71-dev:mipsel libboost-graph-parallel1.71-dev:mipsel libboost-iostreams1.71-dev:mipsel libboost-locale1.71-dev:mipsel libboost-log1.71-dev:mipsel libboost-math1.71-dev:mipsel libboost-mpi1.71-dev:mipsel libboost-mpi-python1.71-dev:mipsel libboost-numpy1.71-dev:mipsel libboost-program-options1.71-dev:mipsel libboost-python1.71-dev:mipsel libboost-random1.71-dev:mipsel libboost-regex1.71-dev:mipsel libboost-serialization1.71-dev:mipsel libboost-stacktrace1.71-dev:mipsel libboost-system1.71-dev:mipsel libboost-test1.71-dev:mipsel libboost-thread1.71-dev:mipsel libboost-timer1.71-dev:mipsel libboost-type-erasure1.71-dev:mipsel libboost-wave1.71-dev:mipsel libboost1.71-tools-dev:mipsel libmpfrc++-dev:mipsel libntl-dev:mipsel glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel libcppunit-doc:mipsel gnupg | gnupg2 git bzr libgd-tools krb5-doc krb5-user libhdf5-doc:mipsel libstdc++-9-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg | gnupg2 libalgorithm-merge-perl curl | wget | lynx fonts-liberation libidn2-0:mipsel ca-certificates libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cmake cmake-data cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:mipsel intltool-debian libaec-dev:mipsel libaec0:mipsel libann0 libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.71-dev:mipsel libbrotli1 libbsd0 libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcairo2 libcdt5 libcgraph6 libclang1-9 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:mipsel libcppunit-dev:mipsel libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libdatrie1 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgd3 libgfortran5:mipsel libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:mipsel libhdf5-cpp-103-1:mipsel libhdf5-dev:mipsel libhdf5-fortran-102:mipsel libhdf5-hl-100:mipsel libhdf5-hl-cpp-100:mipsel libhdf5-hl-fortran-100:mipsel libice6 libicu67 libio-string-perl libjbig0 libjpeg62-turbo libjpeg62-turbo:mipsel libjpeg62-turbo-dev:mipsel libjsoncpp-dev:mipsel libjsoncpp1 libjsoncpp1:mipsel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm9 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libperl5.30 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsz2:mipsel libthai-data libthai0 libtiff5 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.30 po-debconf procps sbuild-build-depends-main-dummy:mipsel sensible-utils ucf x11-common zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 198 newly installed, 0 to remove and 0 not upgraded. Need to get 161 MB of archives. After this operation, 752 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.2-1 [1315 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.1.0-3 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-13 [197 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2-1 [102 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-5 [62.7 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.16-5 [262 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0042 [73.9 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.34-5cross6 [2309 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-13 [1701 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-13 [10.7 MB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.19.7 [1414 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.19.7 [1773 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.16.3-3 [1628 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-2 [8610 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.3-1 [337 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-6.1 [267 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-10 [64.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-10 [115 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-10 [366 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-10 [156 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.50+dfsg-1 [92.9 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.50+dfsg-1 [228 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.41.0-2 [72.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.1 [55.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.68.0-1 [321 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.38.0-2 [128 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.16.3-3 [3674 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.3.0-8cross1 [196 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6465 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-4.1 [16.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.30-2cross1 [1199 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10-20200324-1cross1 [46.6 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10-20200324-1cross1 [90.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10-20200324-1cross1 [6652 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.3.0-8cross1 [223 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6819 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1460 B] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10-20200324-1cross1 [395 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.4.19-1cross1 [1166 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.30-2cross1 [2274 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.3.0-8cross1 [1708 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [7051 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1176 B] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.92 [17.6 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.1-1 [14.9 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.3-1 [1341 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.8-1 [7303 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm9 amd64 1:9.0.1-12 [15.0 MB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-9 amd64 1:9.0.1-12 [6713 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libxapian30 amd64 1.4.15-1 [1085 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 doxygen amd64 1.8.17-1 [9482 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-2 [292 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.1-2 [392 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 libcdt5 amd64 2.42.2-4 [60.7 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 libcgraph6 amd64 2.42.2-4 [85.0 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.9-2 [298 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.9-2+b1 [756 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libltdl7 amd64 2.4.6-14 [390 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.4-1+b1 [1361 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 libdatrie1 amd64 0.2.12-3 [39.5 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 libpango-1.0-0 amd64 1.44.7-4 [183 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.44.7-4 [59.0 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.44.7-4 [48.9 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 libpathplan4 amd64 2.42.2-4 [63.9 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 libgvc6 amd64 2.42.2-4 [691 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 libgvpr2 amd64 2.42.2-4 [211 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-4 [221 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 graphviz amd64 2.42.2-4 [630 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main mipsel hdf5-helpers mipsel 1.10.6+repack-2 [40.0 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.1.0-3 [46.2 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.16-1 [113 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.30-8 [2422 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main mipsel libaec0 mipsel 1.0.4-1 [21.3 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main mipsel libsz2 mipsel 1.0.4-1 [6568 B] Get:172 http://debian.oregonstate.edu/debian unstable/main mipsel libaec-dev mipsel 1.0.4-1 [20.4 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.1.0-3 [6700 B] Get:174 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.1.0-3 [92.2 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-13 [222 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.1.0-3 [435 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.6.14-2 [1108 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.16-1 [134 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.30-8 [2271 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-13 [1717 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main mipsel libboost1.71-dev mipsel 1.71.0-6+b2 [9096 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-dev mipsel 1.71.0.3 [4340 B] Get:183 http://debian.oregonstate.edu/debian unstable/main mipsel libcppunit-1.15-0 mipsel 1.15.1-2 [142 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main mipsel libcppunit-dev mipsel 1.15.1-2 [214 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main mipsel libgfortran5 mipsel 10.1.0-3 [261 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-103-1 mipsel 1.10.6+repack-2 [889 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-cpp-103-1 mipsel 1.10.6+repack-2 [126 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-fortran-102 mipsel 1.10.6+repack-2 [96.1 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-hl-100 mipsel 1.10.6+repack-2 [82.6 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-hl-fortran-100 mipsel 1.10.6+repack-2 [50.4 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-hl-cpp-100 mipsel 1.10.6+repack-2 [37.4 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-2 [190 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main mipsel libjpeg62-turbo mipsel 1:1.5.2-2+b1 [127 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main mipsel libjpeg62-turbo-dev mipsel 1:1.5.2-2+b1 [203 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-dev mipsel 1.10.6+repack-2 [2545 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main mipsel libjsoncpp1 mipsel 1.7.4-3.1 [72.1 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main mipsel libjsoncpp-dev mipsel 1.7.4-3.1 [98.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 161 MB in 1s (119 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 10322 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.2-1_amd64.deb ... Unpacking man-db (2.9.2-1) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../006-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../007-libperl5.30_5.30.3-4_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.3-4) ... Selecting previously unselected package perl. Preparing to unpack .../008-perl_5.30.3-4_amd64.deb ... Unpacking perl (5.30.3-4) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../009-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:mipsel. Preparing to unpack .../010-gcc-10-base_10.1.0-3_mipsel.deb ... Unpacking gcc-10-base:mipsel (10.1.0-3) ... Selecting previously unselected package gcc-9-base:mipsel. Preparing to unpack .../011-gcc-9-base_9.3.0-13_mipsel.deb ... Unpacking gcc-9-base:mipsel (9.3.0-13) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../012-libncurses6_6.2-1_amd64.deb ... Unpacking libncurses6:amd64 (6.2-1) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../013-libprocps8_2%3a3.3.16-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.16-5) ... Selecting previously unselected package procps. Preparing to unpack .../014-procps_2%3a3.3.16-5_amd64.deb ... Unpacking procps (2:3.3.16-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../015-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../016-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../017-libmagic1_1%3a5.38-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../018-file_1%3a5.38-5_amd64.deb ... Unpacking file (1:5.38-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../019-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../020-ucf_3.0042_all.deb ... Moving old data out of the way Unpacking ucf (3.0042) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../021-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../022-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../023-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. 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Setting up libglib2.0-0:amd64 (2.64.3-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1g-1) ... Setting up libbrotli1:amd64 (1.0.7-6.1) ... Setting up liblab-gamut1:amd64 (2.42.2-4) ... Setting up x11-common (1:7.7+20) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.41.0-2) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:mipsel (5.6.14-2) ... Setting up libc6-mipsel-cross (2.30-2cross1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up libldap-common (2.4.50+dfsg-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.17-10) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Setting up gcc-10-base:mipsel (10.1.0-3) ... Setting up autotools-dev (20180224.1) ... Setting up libz3-4:amd64 (4.8.8-1) ... Setting up cross-config (2.6.15-3) ... Setting up libuv1:amd64 (1.38.0-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Setting up libx11-data (2:1.6.9-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up binutils-mipsel-linux-gnu (2.34-5cross6) ... Setting up libpathplan4:amd64 (2.42.2-4) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.8-2) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libgomp1-mipsel-cross (10-20200324-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:amd64 (0.6.1-2+b1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up d-shlibs (0.92) ... Setting up libk5crypto3:amd64 (1.17-10) ... Setting up libltdl7:amd64 (2.4.6-14) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up linux-libc-dev-mipsel-cross (5.4.19-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.30-8) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-3) ... Setting up libcdt5:amd64 (2.42.2-4) ... Setting up libkrb5-3:amd64 (1.17-10) ... Setting up libcgraph6:amd64 (2.42.2-4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libprocps8:amd64 (2:3.3.16-5) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up gcc-9-base:mipsel (9.3.0-13) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up libstdc++-9-dev:amd64 (9.3.0-13) ... Setting up libc6-dev-mipsel-cross (2.30-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:amd64 (3.4.3-1) ... Setting up libxcb-render0:amd64 (1.14-2) ... Setting up libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libldap-2.4-2:amd64 (2.4.50+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-mipsel-cross (10-20200324-1cross1) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up perl (5.30.3-4) ... Setting up libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up libfreetype6:amd64 (2.10.1-2) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-10) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0042) ... Setting up g++-9 (9.3.0-13) ... Setting up libdpkg-perl (1.19.7) ... Setting up autoconf (2.69-11.1) ... Setting up libgvpr2:amd64 (2.42.2-4) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up procps (2:3.3.16-5) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcurl4:amd64 (7.68.0-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.9-2+b1) ... Setting up libharfbuzz0b:amd64 (2.6.4-1+b1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libllvm9:amd64 (1:9.0.1-12) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libstdc++6-mipsel-cross (10-20200324-1cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libclang1-9 (1:9.0.1-12) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdebhelper-perl (13.1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.19.7) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up doxygen (1.8.17-1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up cmake (3.16.3-3) ... Setting up build-essential (12.8) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up po-debconf (1.0.21) ... Setting up libpango-1.0-0:amd64 (1.44.7-4) ... Setting up g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcairo2:amd64 (1.16.0-4) ... Setting up g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.44.7-4) ... Setting up libpangocairo-1.0-0:amd64 (1.44.7-4) ... Setting up libgvc6 (2.42.2-4) ... Setting up libxml-simple-perl (2.25-1) ... Setting up graphviz (2.42.2-4) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.16-1) ... Setting up libgcc-s1:mipsel (10.1.0-3) ... Setting up libc6:mipsel (2.30-8) ... Setting up libcrypt-dev:mipsel (1:4.4.16-1) ... Setting up libc6-dev:mipsel (2.30-8) ... Setting up libstdc++6:mipsel (10.1.0-3) ... Setting up libjsoncpp1:mipsel (1.7.4-3.1) ... Setting up libcppunit-1.15-0:mipsel (1.15.1-2) ... Setting up libjsoncpp-dev:mipsel (1.7.4-3.1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up libgomp1:mipsel (10.1.0-3) ... Setting up libaec0:mipsel (1.0.4-1) ... Setting up dh-autoreconf (19) ... Setting up libjpeg62-turbo:mipsel (1:1.5.2-2+b1) ... Setting up libjpeg62-turbo-dev:mipsel (1:1.5.2-2+b1) ... Setting up libatomic1:mipsel (10.1.0-3) ... Setting up libgfortran5:mipsel (10.1.0-3) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Setting up libcppunit-dev:mipsel (1.15.1-2) ... Setting up libsz2:mipsel (1.0.4-1) ... Setting up libaec-dev:mipsel (1.0.4-1) ... Setting up debhelper (13.1) ... Setting up libgcc-9-dev:mipsel (9.3.0-13) ... Setting up libhdf5-103-1:mipsel (1.10.6+repack-2) ... Setting up libhdf5-cpp-103-1:mipsel (1.10.6+repack-2) ... Setting up libhdf5-hl-100:mipsel (1.10.6+repack-2) ... Setting up libstdc++-9-dev:mipsel (9.3.0-13) ... Setting up libboost1.71-dev:mipsel (1.71.0-6+b2) ... Setting up libhdf5-hl-cpp-100:mipsel (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:mipsel (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:mipsel (1.10.6+repack-2) ... Setting up libboost-dev:mipsel (1.71.0.3) ... Setting up libhdf5-dev:mipsel (1.10.6+repack-2) ... update-alternatives: using /usr/lib/mipsel-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/mipsel-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-13 gcc-9_9.3.0-13 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10.1.0-3 libstdc++6-mipsel-cross_10-20200324-1cross1 linux-libc-dev_5.6.14-2 Package versions: adduser_3.118 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: gatb-core Binary: gatb-core, libgatbcore3, libgatbcore-dev, gatb-core-testdata Architecture: any all Version: 1.4.2+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Nadiya Sitdykova , Andreas Tille Homepage: https://github.com/GATB/gatb-core Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/gatb-core Vcs-Git: https://salsa.debian.org/med-team/gatb-core.git Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz Package-List: gatb-core deb science optional arch=any gatb-core-testdata deb science optional arch=all libgatbcore-dev deb libdevel optional arch=any libgatbcore3 deb libs optional arch=any Checksums-Sha1: cd277a39a042d1b5b3dfdf0b0196b748b7fdb301 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 72de15e16ecb15b91d8e83f08a1574db4b679415 96308 gatb-core_1.4.2+dfsg-2.debian.tar.xz Checksums-Sha256: cc72101654da4254253c3c74f02651e3b2cfbf49af95a849d21efdb13481fc66 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz c7f7af1c289f568cbe435de6296f25f9148881beb5a33f417ba7ae6e827eec09 96308 gatb-core_1.4.2+dfsg-2.debian.tar.xz Files: ac56735b1e461083d9830d8e1c2a9108 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz e1189df94b72cc001da3495c7b430428 96308 gatb-core_1.4.2+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl7hJp4ACgkQL9i+2sAg 7tHIJRAAj2EisqglY5COTyZALAersURuSZAc9kn9gruI3BtGn9ci4s5/c8CQW8q/ a4sKiDkNAxrRL4uqEXvmRaeo9yIK2KMSXDcJhKcshAY5agWu8DMOjZHryGIWgLbg 9kU0NblsSBlwD0s8GkZiv/6UWtYtGr/06TV+Xfi1QopzegTCL+PmDylYCx+OdDfx uhE849CSs4YyrSgqeaQli3NBdhpuE1+7UUj1ZfGExMPxrkLaLwLV2NLzeJ2HwpQa lyhskNLSzunE+l6XR4p10ZBum6Kr/pNbOi21qiUGeT+ZfgliRWVjguJtMQnbpnTF rRFhBk4ELlYarjvNCmGptDXk6lywMDyjPbJFIkU1oosAKPi4nXlykElZuQmrivh/ URuXMrOXCYT0dKdBZ68FNEm8QKiCCcVayLFEy+hgF1Sd+3U6rPpxiaEGoSnvyDHu 2sElktadJdUQKIxc4FdUUMF28TI/eEQPkPCvS51CEB1q6Vs6pQuhNOJhqaL9rvfu d4szM1WRv5gmoN29iIUl3Z151CeHhQ6Uk2nbKsXYBBnRvaEw4/ZZ4nrCk94kKSXo TVyPxJDnoXgVwdJilXw3lD/pS6resu79IJpo4/JJXZRiqvNA3vNLxfQHQrySBF/u qGs4emFEyg7TyhHQDsAjNBG09bxcVDC07erqizgl8Dk5LsjvfZU= =hDyG -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jun 10 18:29:50 2020 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gatb-core_1.4.2+dfsg-2.dsc dpkg-source: info: extracting gatb-core in /<> dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-5848ac17-973b-4483-bfe2-fd53a378c5ff SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_CXX_STANDARD_LIBRARIES=-latomic cd obj-mipsel-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mipsel -DCMAKE_C_COMPILER=mipsel-linux-gnu-gcc -DCMAKE_CXX_COMPILER=mipsel-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mipsel-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/mipsel-linux-gnu -DCMAKE_CXX_STANDARD_LIBRARIES=-latomic ../gatb-core -- The C compiler identification is GNU 9.3.0 -- The CXX compiler identification is GNU 9.3.0 -- Check for working C compiler: /usr/bin/mipsel-linux-gnu-gcc -- Check for working C compiler: /usr/bin/mipsel-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mipsel-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/mipsel-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - failed -- Options: -std=c++11 -Wno-invalid-offsetof -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/mipsel-linux-gnu/libpthread.so;/usr/lib/mipsel-linux-gnu/libsz.so;/usr/lib/mipsel-linux-gnu/libz.so;/usr/lib/mipsel-linux-gnu/libdl.so;/usr/lib/mipsel-linux-gnu/libm.so (found version "1.10.6") -- HDF5_LIBRARIES="/usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/mipsel-linux-gnu/libpthread.so/usr/lib/mipsel-linux-gnu/libsz.so/usr/lib/mipsel-linux-gnu/libz.so/usr/lib/mipsel-linux-gnu/libdl.so/usr/lib/mipsel-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/mipsel-linux-gnu/libpthread.so;/usr/lib/mipsel-linux-gnu/libsz.so;/usr/lib/mipsel-linux-gnu/libz.so;/usr/lib/mipsel-linux-gnu/libdl.so;/usr/lib/mipsel-linux-gnu/libm.so (found version "1.10.6") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.8.17") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-mipsel-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -a cd obj-mipsel-linux-gnu && make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/obj-mipsel-linux-gnu' /usr/bin/cmake -S/<>/gatb-core -B/<>/obj-mipsel-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-mipsel-linux-gnu/CMakeFiles /<>/obj-mipsel-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src /<>/obj-mipsel-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= Scanning dependencies of target gatbcore-dynamic make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int64_t’ {aka ‘long long int’} [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | int64_t {aka long long int} | long int | %lld [ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 42%] Linking CXX shared library ../lib/None/libgatbcore.so cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-g++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -latomic cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 42%] Built target gatbcore-dynamic make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src /<>/obj-mipsel-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int64_t’ {aka ‘long long int’} [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | int64_t {aka long long int} | long int | %lld [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd 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CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o /usr/bin/mipsel-linux-gnu-ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 86%] Built target gatbcore-static make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/test/unit /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/test/unit /<>/obj-mipsel-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= Scanning dependencies of target gatb-core-cppunit make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 86%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestBank.cpp /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample1_aux(const string&, gatb::core::bank::impl::BankFasta::Iterator::CommentMode_e)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:118:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 118 | snprintf (buffer, sizeof(buffer), "seq%ld%s", i+1, (mode == BankFasta::Iterator::FULL ? " generic" : "")); | ~~^ ~~~ | | | | | size_t {aka unsigned int} | long int | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample2_aux(const string&)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:187:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 187 | snprintf (buffer, sizeof(buffer), "seq%ld", nbSeq+1); | ~~^ ~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_perf1()’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘gatb::core::system::ITime::Value’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~ | | | gatb::core::system::ITime::Value {aka long long unsigned int} [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestLeon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/test/unit/src/bank/TestLeon.cpp:32: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestSequence.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -c /<>/gatb-core/test/unit/src/bcalm/TestBcalm.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDSK.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDebloom.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmer.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmerBank.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp:27: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -c /<>/gatb-core/test/unit/src/main.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -c /<>/gatb-core/test/unit/src/system/TestSystem.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestBag.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestCollection.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestContainer.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestIterable.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -c /<>/gatb-core/test/unit/src/tools/designpattern/TestIterators.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -c /<>/gatb-core/test/unit/src/tools/math/TestMath.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/mipsel-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/mipsel-linux-gnu/libpthread.so /usr/lib/mipsel-linux-gnu/libsz.so /usr/lib/mipsel-linux-gnu/libz.so /usr/lib/mipsel-linux-gnu/libdl.so /usr/lib/mipsel-linux-gnu/libm.so /usr/lib/mipsel-linux-gnu/libcppunit.so -latomic /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o: in function `gatb::tests::TestSystem::thread_checkTime_mainloop(void*)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/test/unit/src/system/TestSystem.cpp:603: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/test/unit/src/system/TestSystem.cpp:603: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Leon.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::insert(gatb::core::tools::math::NativeInt8 const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Leon.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::kmer::impl::ReadSuperKCommand<128u>::execute()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel<__gnu_cxx::__normal_iterator > > >(std::vector >&, std::shared_ptr<__gnu_cxx::__normal_iterator > > >, std::shared_ptr<__gnu_cxx::__normal_iterator > > >, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<32u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch >::insert(gatb::core::tools::math::LargeInt<1> const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch::insert(gatb::core::tools::math::NativeInt64 const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: more undefined references to `__sync_add_and_fetch_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<128u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<96u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<64u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o): in function `gatb::core::kmer::impl::ReadSuperKCommand<32u>::execute()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(DnaCoder.cpp.o): in function `DnaEncoder::~DnaEncoder()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:238: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:238: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:239: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(DnaCoder.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:239: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Histogram.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' collect2: error: ld returned 1 exit status make[4]: *** [test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make:440: bin/None/gatb-core-cppunit] Error 1 make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:399: test/unit/CMakeFiles/gatb-core-cppunit.dir/all] Error 2 make[3]: Leaving directory '/<>/obj-mipsel-linux-gnu' make[2]: *** [Makefile:155: all] Error 2 make[2]: Leaving directory '/<>/obj-mipsel-linux-gnu' dh_auto_build: error: cd obj-mipsel-linux-gnu && make -j1 "INSTALL=install --strip-program=true" returned exit code 2 make[1]: *** [debian/rules:21: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:15: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-06-12T23:12:46Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1731944 Build-Time: 2622 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 34 Job: gatb-core_1.4.2+dfsg-2 Machine Architecture: amd64 Package: gatb-core Package-Time: 2666 Source-Version: 1.4.2+dfsg-2 Space: 1731944 Status: attempted Version: 1.4.2+dfsg-2 -------------------------------------------------------------------------------- Finished at 2020-06-12T23:12:46Z Build needed 00:44:26, 1731944k disk space