sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | gatb-core 1.4.2+dfsg-5 (mipsel) Fri, 07 Aug 2020 12:03:04 +0000 | +==============================================================================+ Package: gatb-core Version: 1.4.2+dfsg-5 Source Version: 1.4.2+dfsg-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9768b48a-5048-4ce0-9457-867e1f75e69b' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-7FQzQK/resolver-p98CFN' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-07-0800.49.pdiff [5836 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-07-0800.49.pdiff [5836 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-07-0800.49.pdiff [6591 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-07-0800.49.pdiff [6591 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8039 kB] Fetched 8254 kB in 2s (5204 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3043 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.2+dfsg-5 (dsc) [2317 B] Get:2 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.2+dfsg-5 (tar) [2945 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main gatb-core 1.4.2+dfsg-5 (diff) [96.0 kB] Fetched 3043 kB in 0s (83.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gatb-core-7FQzQK/gatb-core-1.4.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-7FQzQK' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [451 B] Get:5 copy:/<>/apt_archive ./ Packages [539 B] Fetched 1947 B in 0s (91.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:mipsel intltool-debian libaec-dev:mipsel libaec0:mipsel libann0 libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.71-dev:mipsel libbrotli1 libbsd0 libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcairo2 libcdt5 libcgraph6 libclang1-9 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:mipsel libcppunit-dev:mipsel libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libdatrie1 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgd3 libgfortran5:mipsel libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:mipsel libhdf5-cpp-103-1:mipsel libhdf5-dev:mipsel libhdf5-fortran-102:mipsel libhdf5-hl-100:mipsel libhdf5-hl-cpp-100:mipsel libhdf5-hl-fortran-100:mipsel libice6 libicu67 libio-string-perl libjbig0 libjpeg62-turbo libjpeg62-turbo:mipsel libjpeg62-turbo-dev:mipsel libjsoncpp-dev:mipsel libjsoncpp1 libjsoncpp1:mipsel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm9 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libperl5.30 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-10-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsz2:mipsel libthai-data libthai0 libtiff5 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.30 po-debconf procps sensible-utils ucf x11-common zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build gcc-9-locales cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-9-multilib-mipsel-linux-gnu gcc-9-doc gcc-9-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc:mipsel libboost1.71-doc:mipsel libboost-atomic1.71-dev:mipsel libboost-chrono1.71-dev:mipsel libboost-container1.71-dev:mipsel libboost-context1.71-dev:mipsel libboost-contract1.71-dev:mipsel libboost-coroutine1.71-dev:mipsel libboost-date-time1.71-dev:mipsel libboost-exception1.71-dev:mipsel libboost-fiber1.71-dev:mipsel libboost-filesystem1.71-dev:mipsel libboost-graph1.71-dev:mipsel libboost-graph-parallel1.71-dev:mipsel libboost-iostreams1.71-dev:mipsel libboost-locale1.71-dev:mipsel libboost-log1.71-dev:mipsel libboost-math1.71-dev:mipsel libboost-mpi1.71-dev:mipsel libboost-mpi-python1.71-dev:mipsel libboost-numpy1.71-dev:mipsel libboost-program-options1.71-dev:mipsel libboost-python1.71-dev:mipsel libboost-random1.71-dev:mipsel libboost-regex1.71-dev:mipsel libboost-serialization1.71-dev:mipsel libboost-stacktrace1.71-dev:mipsel libboost-system1.71-dev:mipsel libboost-test1.71-dev:mipsel libboost-thread1.71-dev:mipsel libboost-timer1.71-dev:mipsel libboost-type-erasure1.71-dev:mipsel libboost-wave1.71-dev:mipsel libboost1.71-tools-dev:mipsel libmpfrc++-dev:mipsel libntl-dev:mipsel glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel libcppunit-doc:mipsel gnupg git bzr libgd-tools krb5-doc krb5-user libhdf5-doc:mipsel libstdc++-10-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx fonts-liberation libidn2-0:mipsel ca-certificates libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:mipsel intltool-debian libaec-dev:mipsel libaec0:mipsel libann0 libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.71-dev:mipsel libbrotli1 libbsd0 libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcairo2 libcdt5 libcgraph6 libclang1-9 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:mipsel libcppunit-dev:mipsel libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libdatrie1 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgd3 libgfortran5:mipsel libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:mipsel libhdf5-cpp-103-1:mipsel libhdf5-dev:mipsel libhdf5-fortran-102:mipsel libhdf5-hl-100:mipsel libhdf5-hl-cpp-100:mipsel libhdf5-hl-fortran-100:mipsel libice6 libicu67 libio-string-perl libjbig0 libjpeg62-turbo libjpeg62-turbo:mipsel libjpeg62-turbo-dev:mipsel libjsoncpp-dev:mipsel libjsoncpp1 libjsoncpp1:mipsel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm9 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libperl5.30 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-10-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsz2:mipsel libthai-data libthai0 libtiff5 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.30 po-debconf procps sbuild-build-depends-main-dummy:mipsel sensible-utils ucf x11-common zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 198 newly installed, 0 to remove and 0 not upgraded. Need to get 159 MB of archives. After this operation, 747 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.2.0-3 [198 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-16 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2-1 [102 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-5 [62.7 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.16-5 [262 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.35-1cross1 [2352 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-3 [1714 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-3 [8658 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.1.0-1 [1644 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.16.3-3 [1628 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-3 [8610 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.3-2 [342 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-7 [267 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-10 [64.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-10 [115 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-10 [366 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-10 [156 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.50+dfsg-1 [92.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.50+dfsg-1+b1 [228 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.41.0-2 [72.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.1 [55.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.68.0-1+b1 [322 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.4.0-1 [124 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.38.0-3 [128 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.16.3-3 [3674 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.3.0-8cross1 [196 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6465 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-4.1 [16.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.31-2cross1 [1212 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10-20200324-1cross1 [46.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10-20200324-1cross1 [90.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10-20200324-1cross1 [6652 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.3.0-8cross1 [223 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6819 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1460 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10-20200324-1cross1 [395 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.7.10-1cross1 [1237 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.31-2cross1 [2074 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.3.0-8cross1 [1708 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [7051 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1176 B] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.93 [17.7 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.180-1+b1 [165 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libz3-4 amd64 4.8.8-1 [7303 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libllvm9 amd64 1:9.0.1-13+b1 [15.0 MB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libclang1-9 amd64 1:9.0.1-13+b1 [6721 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libxapian30 amd64 1.4.15-1 [1085 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 doxygen amd64 1.8.18-1 [9315 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-2 [292 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.2+dfsg-3 [409 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 libcdt5 amd64 2.42.2-4 [60.7 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 libcgraph6 amd64 2.42.2-4 [85.0 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.10-3 [311 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.10-3 [770 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libltdl7 amd64 2.4.6-14 [390 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.7-1 [1467 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 libdatrie1 amd64 0.2.12-3 [39.5 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main amd64 libpango-1.0-0 amd64 1.44.7-5 [185 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.44.7-5 [59.7 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.44.7-5 [49.6 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main amd64 libpathplan4 amd64 2.42.2-4 [63.9 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 libgvc6 amd64 2.42.2-4 [691 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 libgvpr2 amd64 2.42.2-4 [211 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-4 [221 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 graphviz amd64 2.42.2-4 [630 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main mipsel hdf5-helpers mipsel 1.10.6+repack-2 [40.0 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.2.0-3 [46.2 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.16-1 [113 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.31-3 [2442 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main mipsel libaec0 mipsel 1.0.4-1 [21.3 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main mipsel libsz2 mipsel 1.0.4-1 [6568 B] Get:172 http://debian.oregonstate.edu/debian unstable/main mipsel libaec-dev mipsel 1.0.4-1 [20.4 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.2.0-3 [6700 B] Get:174 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.2.0-3 [93.0 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-16 [222 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.2.0-3 [435 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.7.10-1 [1135 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.16-1 [134 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.31-3 [2065 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-16 [1718 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main mipsel libboost1.71-dev mipsel 1.71.0-6+b2 [9096 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-dev mipsel 1.71.0.3 [4340 B] Get:183 http://debian.oregonstate.edu/debian unstable/main mipsel libcppunit-1.15-0 mipsel 1.15.1-2 [142 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main mipsel libcppunit-dev mipsel 1.15.1-2 [214 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main mipsel libgfortran5 mipsel 10.2.0-3 [261 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-103-1 mipsel 1.10.6+repack-2 [889 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-cpp-103-1 mipsel 1.10.6+repack-2 [126 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-fortran-102 mipsel 1.10.6+repack-2 [96.1 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-hl-100 mipsel 1.10.6+repack-2 [82.6 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-hl-fortran-100 mipsel 1.10.6+repack-2 [50.4 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-hl-cpp-100 mipsel 1.10.6+repack-2 [37.4 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-2 [190 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main mipsel libjpeg62-turbo mipsel 1:2.0.5-1.1 [136 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main mipsel libjpeg62-turbo-dev mipsel 1:2.0.5-1.1 [263 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main mipsel libhdf5-dev mipsel 1.10.6+repack-2 [2545 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main mipsel libjsoncpp1 mipsel 1.7.4-3.1 [72.1 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main mipsel libjsoncpp-dev mipsel 1.7.4-3.1 [98.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 159 MB in 1s (118 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10440 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-2_amd64.deb ... Unpacking bsdextrautils (2.36-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../005-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../006-libperl5.30_5.30.3-4_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.3-4) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.30.3-4_amd64.deb ... Unpacking perl (5.30.3-4) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:mipsel. Preparing to unpack .../009-gcc-10-base_10.2.0-3_mipsel.deb ... Unpacking gcc-10-base:mipsel (10.2.0-3) ... Selecting previously unselected package gcc-9-base:mipsel. Preparing to unpack .../010-gcc-9-base_9.3.0-16_mipsel.deb ... Unpacking gcc-9-base:mipsel (9.3.0-16) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../011-libncurses6_6.2-1_amd64.deb ... Unpacking libncurses6:amd64 (6.2-1) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../012-libprocps8_2%3a3.3.16-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.16-5) ... Selecting previously unselected package procps. Preparing to unpack .../013-procps_2%3a3.3.16-5_amd64.deb ... Unpacking procps (2:3.3.16-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../014-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../015-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../016-libmagic1_1%3a5.38-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../017-file_1%3a5.38-5_amd64.deb ... Unpacking file (1:5.38-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../018-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../019-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../020-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.16.2-3_all.deb ... Unpacking automake (1:1.16.2-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../026-binutils-mipsel-linux-gnu_2.35-1cross1_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.35-1cross1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../027-libcrypt-dev_1%3a4.4.16-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.16-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../028-libc6-dev_2.31-3_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-3) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../029-libstdc++-10-dev_10.2.0-3_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.0-3) ... Selecting previously unselected package g++-10. 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Setting up perl-modules-5.30 (5.30.3-4) ... Setting up bsdextrautils (2.36-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers:mipsel (1.10.6+repack-2) ... Setting up libicu67:amd64 (67.1-3) ... Setting up libdatrie1:amd64 (0.2.12-3) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.64.4-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1g-1) ... Setting up libbrotli1:amd64 (1.0.7-7) ... Setting up liblab-gamut1:amd64 (2.42.2-4) ... Setting up x11-common (1:7.7+20) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.41.0-2) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:mipsel (5.7.10-1) ... Setting up libc6-mipsel-cross (2.31-2cross1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up libldap-common (2.4.50+dfsg-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.17-10) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Setting up gcc-10-base:mipsel (10.2.0-3) ... Setting up autotools-dev (20180224.1) ... Setting up libz3-4:amd64 (4.8.8-1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libuv1:amd64 (1.38.0-3) ... Setting up libjpeg62-turbo:amd64 (1:2.0.5-1.1) ... Setting up gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Setting up libx11-data (2:1.6.10-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up binutils-mipsel-linux-gnu (2.35-1cross1) ... Setting up libpathplan4:amd64 (2.42.2-4) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.8-2) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libgomp1-mipsel-cross (10-20200324-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:amd64 (0.6.1-2+b1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up d-shlibs (0.93) ... Setting up libk5crypto3:amd64 (1.17-10) ... Setting up libltdl7:amd64 (2.4.6-14) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up linux-libc-dev-mipsel-cross (5.7.10-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up librhash0:amd64 (1.4.0-1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-3) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-3) ... Setting up libcdt5:amd64 (2.42.2-4) ... Setting up libkrb5-3:amd64 (1.17-10) ... Setting up libcgraph6:amd64 (2.42.2-4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.180-1+b1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libprocps8:amd64 (2:3.3.16-5) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up gcc-9-base:mipsel (9.3.0-16) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up libstdc++-10-dev:amd64 (10.2.0-3) ... Setting up g++-10 (10.2.0-3) ... Setting up libc6-dev-mipsel-cross (2.31-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:amd64 (3.4.3-2) ... Setting up libxcb-render0:amd64 (1.14-2) ... Setting up libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libldap-2.4-2:amd64 (2.4.50+dfsg-1+b1) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-mipsel-cross (10-20200324-1cross1) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up perl (5.30.3-4) ... Setting up libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up libfreetype6:amd64 (2.10.2+dfsg-3) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libgssapi-krb5-2:amd64 (1.17-10) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up libgvpr2:amd64 (2.42.2-4) ... Setting up g++ (4:10.1.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up procps (2:3.3.16-5) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcurl4:amd64 (7.68.0-1+b1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.10-3) ... Setting up libharfbuzz0b:amd64 (2.6.7-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libllvm9:amd64 (1:9.0.1-13+b1) ... Setting up automake (1:1.16.2-3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libstdc++6-mipsel-cross (10-20200324-1cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libclang1-9 (1:9.0.1-13+b1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdebhelper-perl (13.2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up doxygen (1.8.18-1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up cmake (3.16.3-3) ... Setting up build-essential (12.8) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up po-debconf (1.0.21) ... Setting up libpango-1.0-0:amd64 (1.44.7-5) ... Setting up g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcairo2:amd64 (1.16.0-4) ... Setting up g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libpangoft2-1.0-0:amd64 (1.44.7-5) ... Setting up libpangocairo-1.0-0:amd64 (1.44.7-5) ... Setting up libgvc6 (2.42.2-4) ... Setting up libxml-simple-perl (2.25-1) ... Setting up graphviz (2.42.2-4) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.16-1) ... Setting up libgcc-s1:mipsel (10.2.0-3) ... Setting up libc6:mipsel (2.31-3) ... Setting up libcrypt-dev:mipsel (1:4.4.16-1) ... Setting up libc6-dev:mipsel (2.31-3) ... Setting up libstdc++6:mipsel (10.2.0-3) ... Setting up libjsoncpp1:mipsel (1.7.4-3.1) ... Setting up libcppunit-1.15-0:mipsel (1.15.1-2) ... Setting up libjsoncpp-dev:mipsel (1.7.4-3.1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up libgomp1:mipsel (10.2.0-3) ... Setting up libaec0:mipsel (1.0.4-1) ... Setting up dh-autoreconf (19) ... Setting up libjpeg62-turbo:mipsel (1:2.0.5-1.1) ... Setting up libjpeg62-turbo-dev:mipsel (1:2.0.5-1.1) ... Setting up libatomic1:mipsel (10.2.0-3) ... Setting up libgfortran5:mipsel (10.2.0-3) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Setting up libcppunit-dev:mipsel (1.15.1-2) ... Setting up libsz2:mipsel (1.0.4-1) ... Setting up libaec-dev:mipsel (1.0.4-1) ... Setting up debhelper (13.2) ... Setting up libgcc-9-dev:mipsel (9.3.0-16) ... Setting up libhdf5-103-1:mipsel (1.10.6+repack-2) ... Setting up libhdf5-cpp-103-1:mipsel (1.10.6+repack-2) ... Setting up libhdf5-hl-100:mipsel (1.10.6+repack-2) ... Setting up libstdc++-9-dev:mipsel (9.3.0-16) ... Setting up libboost1.71-dev:mipsel (1.71.0-6+b2) ... Setting up libhdf5-hl-cpp-100:mipsel (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:mipsel (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:mipsel (1.10.6+repack-2) ... Setting up libboost-dev:mipsel (1.71.0.3) ... Setting up libhdf5-dev:mipsel (1.10.6+repack-2) ... update-alternatives: using /usr/lib/mipsel-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/mipsel-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) amd64 (x86_64) Toolchain package versions: binutils_2.35-1 dpkg-dev_1.20.5 g++-10_10.2.0-3 gcc-10_10.2.0-3 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-3 libstdc++-9-dev_9.3.0-16 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10.2.0-3 libstdc++6-mipsel-cross_10-20200324-1cross1 linux-libc-dev_5.7.10-1 Package versions: adduser_3.118 apt_2.1.8 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 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Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: gatb-core Binary: gatb-core, libgatbcore3, libgatbcore-dev, gatb-core-testdata Architecture: any all Version: 1.4.2+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Nadiya Sitdykova , Andreas Tille Homepage: https://github.com/GATB/gatb-core Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/gatb-core Vcs-Git: https://salsa.debian.org/med-team/gatb-core.git Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz Package-List: gatb-core deb science optional arch=any gatb-core-testdata deb science optional arch=all libgatbcore-dev deb libdevel optional arch=any libgatbcore3 deb libs optional arch=any Checksums-Sha1: cd277a39a042d1b5b3dfdf0b0196b748b7fdb301 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 526fa92142acf91e16e0c083ede47e570d637d6e 95952 gatb-core_1.4.2+dfsg-5.debian.tar.xz Checksums-Sha256: cc72101654da4254253c3c74f02651e3b2cfbf49af95a849d21efdb13481fc66 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz ad6d9480a49413882b57c3e8730943bd405305aac31f35a490aee7d42a4c34c7 95952 gatb-core_1.4.2+dfsg-5.debian.tar.xz Files: ac56735b1e461083d9830d8e1c2a9108 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 9c8976cd167b93e63c327215cd51b211 95952 gatb-core_1.4.2+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8ayiERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGVQA/9G8jbh1V2958SqoMGnj4GOwEW7DyP4y8n XqRszsI8/ctOHDTlhE8nLctPp04w6Xk0t9ZRWGfz4RBlw0Y9+VKl2qRsvmIV0GgK 2JnuTqMYkaaaA7AOGJMyZlXAAbSwzlmMSoGHEnqPzIa8LiDeIsfVyaPUmnCckeGp e+CeAjt1DmhNVc29PmCdDcLNNQxkzP1slZPabI0qoxHEj+XNkgjnx7z/jBm947rq IbnJLDjW0N+vEjU7TwEPG0Cbaekb/FM/Z7Hu3XuogmqOdC0DtCqoLQ61sQhMiCOe pzQZyg2X9i8KERC03o8X7ieJT1gEKaFWKfjX9J9POR5WbGJ6YUiuzs7FTQ0KB6LK VEt/IVFjrFCYfCdhZ58RBawJNBuNisvses1t75nNsRX/mYdfwEVUwGubcirIQqvV mu+su+B05jUIL/g5F/A7AX/CypxmuxElcuKBel8xQ4UlFqpzuTsSSDNvsN8ojkQk QHfMK9Ok/898Nq8P2pCY5HryLsrd4WXbGf6lW3TdFmQAp0fx5ok9BEZt+0ejkiLE xlwo1d3+7T3+Xnyg2/92U4r2oOkIOPmghW8capH9uSuLFXyhl7UzKdj5JFYno6q2 gEYoFrwWo9gpNJuRUX8aWSKCbRlg5VyGdH2oGU5+dLFR3AUCZgTTummEw8CkV9D9 kwqQvwZRDZE= =09MZ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.cOufhbJm/trustedkeys.kbx': General error gpgv: Signature made Fri Jul 24 11:46:41 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gatb-core_1.4.2+dfsg-5.dsc dpkg-source: info: extracting gatb-core in /<> dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9768b48a-5048-4ce0-9457-867e1f75e69b SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_CXX_STANDARD_LIBRARIES=-latomic cd obj-mipsel-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mipsel -DCMAKE_C_COMPILER=mipsel-linux-gnu-gcc -DCMAKE_CXX_COMPILER=mipsel-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mipsel-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/mipsel-linux-gnu -DCMAKE_CXX_STANDARD_LIBRARIES=-latomic ../gatb-core -- The C compiler identification is GNU 9.3.0 -- The CXX compiler identification is GNU 9.3.0 -- Check for working C compiler: /usr/bin/mipsel-linux-gnu-gcc -- Check for working C compiler: /usr/bin/mipsel-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mipsel-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/mipsel-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - failed -- Options: -std=c++11 -Wno-invalid-offsetof -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/mipsel-linux-gnu/libpthread.so;/usr/lib/mipsel-linux-gnu/libsz.so;/usr/lib/mipsel-linux-gnu/libz.so;/usr/lib/mipsel-linux-gnu/libdl.so;/usr/lib/mipsel-linux-gnu/libm.so (found version "1.10.6") -- HDF5_LIBRARIES="/usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/mipsel-linux-gnu/libpthread.so/usr/lib/mipsel-linux-gnu/libsz.so/usr/lib/mipsel-linux-gnu/libz.so/usr/lib/mipsel-linux-gnu/libdl.so/usr/lib/mipsel-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/mipsel-linux-gnu/libpthread.so;/usr/lib/mipsel-linux-gnu/libsz.so;/usr/lib/mipsel-linux-gnu/libz.so;/usr/lib/mipsel-linux-gnu/libdl.so;/usr/lib/mipsel-linux-gnu/libm.so (found version "1.10.6") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.8.18") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-mipsel-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -a cd obj-mipsel-linux-gnu && make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/obj-mipsel-linux-gnu' /usr/bin/cmake -S/<>/gatb-core -B/<>/obj-mipsel-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-mipsel-linux-gnu/CMakeFiles /<>/obj-mipsel-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src /<>/obj-mipsel-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= Scanning dependencies of target gatbcore-dynamic make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int64_t’ {aka ‘long long int’} [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | int64_t {aka long long int} | long int | %lld [ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 42%] Linking CXX shared library ../lib/None/libgatbcore.so cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-g++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o 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CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -latomic cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 42%] Built target gatbcore-dynamic make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src /<>/obj-mipsel-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int64_t’ {aka ‘long long int’} [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | int64_t {aka long long int} | long int | %lld [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:28: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:66: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ | | | | | long unsigned int | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | long unsigned int | std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 86%] Linking CXX static library ../lib/None/libgatbcore.a cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-ar qc ../lib/None/libgatbcore.a CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o 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CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o /usr/bin/mipsel-linux-gnu-ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 86%] Built target gatbcore-static make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/test/unit /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/test/unit /<>/obj-mipsel-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= Scanning dependencies of target gatb-core-cppunit make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 86%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestBank.cpp /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample1_aux(const string&, gatb::core::bank::impl::BankFasta::Iterator::CommentMode_e)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:118:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 118 | snprintf (buffer, sizeof(buffer), "seq%ld%s", i+1, (mode == BankFasta::Iterator::FULL ? " generic" : "")); | ~~^ ~~~ | | | | | size_t {aka unsigned int} | long int | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample2_aux(const string&)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:187:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 187 | snprintf (buffer, sizeof(buffer), "seq%ld", nbSeq+1); | ~~^ ~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_perf1()’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘gatb::core::system::ITime::Value’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~ | | | gatb::core::system::ITime::Value {aka long long unsigned int} [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestLeon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/test/unit/src/bank/TestLeon.cpp:32: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestSequence.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -c /<>/gatb-core/test/unit/src/bcalm/TestBcalm.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDSK.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDebloom.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmer.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmerBank.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp:27: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -c /<>/gatb-core/test/unit/src/main.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -c /<>/gatb-core/test/unit/src/system/TestSystem.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestBag.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestCollection.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestContainer.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestIterable.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:32: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -c /<>/gatb-core/test/unit/src/tools/designpattern/TestIterators.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -c /<>/gatb-core/test/unit/src/tools/math/TestMath.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o 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CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/mipsel-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/mipsel-linux-gnu/libpthread.so /usr/lib/mipsel-linux-gnu/libsz.so /usr/lib/mipsel-linux-gnu/libz.so /usr/lib/mipsel-linux-gnu/libdl.so /usr/lib/mipsel-linux-gnu/libm.so /usr/lib/mipsel-linux-gnu/libcppunit.so -latomic /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3cd4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3d31 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3d9a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a1c0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a1cc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a85c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a8a3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a8ea /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a931 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a960 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a99b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset a9a7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 5689 CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o: in function `gatb::tests::TestSystem::thread_checkTime_mainloop(void*)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/test/unit/src/system/TestSystem.cpp:603: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/test/unit/src/system/TestSystem.cpp:603: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a572 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a580 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a58e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a59c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a5aa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a5b8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a5d4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a5c6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6a924 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6ab34 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 51a9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 5206 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 526f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3fc07 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3fc13 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 402b0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 402f7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4033e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40385 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 403b4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 403ef /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 403fb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64087 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 640f3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64513 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64558 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 645d1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 646a6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 647cc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64618 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64813 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 648ad /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 648f4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6465f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 641aa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64216 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64282 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 642ee /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6493b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 649f1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64a38 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64a7f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64ac6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64b0d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64b54 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64be5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64982 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64cba /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64c73 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64c2c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64d49 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64d90 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64dd7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64e1e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64e65 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64468 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64493 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64b9b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64eac /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64ef6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64f40 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64f8a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64fd1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 65018 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6505f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 64d01 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bc1e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bc2d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bb5f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bbbc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bc66 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bc78 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bcae /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1bcbd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1f413 ../../lib/None/libgatbcore.a(Leon.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::insert(gatb::core::tools::math::NativeInt8 const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Leon.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 5077 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 50d4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 513d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4df0b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4df18 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e5d5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e620 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e66b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6b6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6e7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e725 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e732 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79dc8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79e35 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a25d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a2a3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a31d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a3f2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a518 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a364 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a55f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a5f9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a640 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a3ab /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79eed /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79f5a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79fc7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a034 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a687 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a73d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a784 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a7cb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a812 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a859 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a8a0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a931 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a6ce /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa06 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a9bf /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a978 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa95 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aadc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ab23 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ab6a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7abb1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a1af /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a1db /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a8e7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7abf8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ac42 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ac8c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7acd6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ad1d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ad64 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7adab /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa4d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb8c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb9b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1facd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb2a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbd4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbe6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc1c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc2b ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::kmer::impl::ReadSuperKCommand<128u>::execute()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 5077 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 50d4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 513d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4df0b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4df18 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e5d5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e620 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e66b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6b6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6e7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e725 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e732 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79dc5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79e32 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a25a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a2a0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a31a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a3ef /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a515 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a361 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a55c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a5f6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a63d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a3a8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79eea /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79f57 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79fc4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a031 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a684 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a73a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a781 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a7c8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a80f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a856 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a89d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a92e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a6cb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa03 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a9bc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a975 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa92 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aad9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ab20 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ab67 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7abae /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a1ac /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a1d8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a8e4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7abf5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ac3f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ac89 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7acd3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ad1a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ad61 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ada8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa4a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb8c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb9b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1facd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb2a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbd4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbe6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc1c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc2b ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 5076 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 50d3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 513c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4deed /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4defa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e5b7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e602 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e64d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e698 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6c9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e707 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e714 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79da0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79e0d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a235 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a27b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a2f5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a3ca /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a4f0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a33c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a537 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a5d1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a618 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a383 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79ec5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79f32 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79f9f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a00c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a65f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a715 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a75c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a7a3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a7ea /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a831 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a878 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a909 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a6a6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a9de /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a997 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a950 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa6d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aab4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aafb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ab42 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ab89 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a187 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a1b3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a8bf /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7abd0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ac1a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ac64 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7acae /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7acf5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ad3c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7ad83 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7aa25 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb7f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb8e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fac0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb1d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbc7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbd9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc0f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc1e ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 15b9d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 15bfa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 15c63 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 93e31 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 93e3e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 944e1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 9452c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 94577 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 9486b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 9489c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 948da /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 948e7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aaa67 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aaad4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aaf0c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aaf52 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aafcf /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab0b3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab1f0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab01b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab23c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab2db /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab327 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab067 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aab8c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aabf9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aac66 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aacd3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab373 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab433 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab47f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab4cb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab517 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab563 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab5af /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab64a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab3bf /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab72e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab6e2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab696 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab7c7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab813 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab85f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab8ab /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab8f7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aae4e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aae7a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab5fb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab943 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab992 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab9e1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aba30 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 312b4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 312c3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 311f5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 31252 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3131f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 31331 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 31367 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 31376 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset aba7c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset abac8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset abb14 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset ab77a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 5178c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 6ce55 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 74d4f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 82955 ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel<__gnu_cxx::__normal_iterator > > >(std::vector >&, std::shared_ptr<__gnu_cxx::__normal_iterator > > >, std::shared_ptr<__gnu_cxx::__normal_iterator > > >, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3d6b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3dc8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3e31 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2529d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 252a9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 25946 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2598d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 259d4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 25d2b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 25d5a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 25d95 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 25da1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 655e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b3f9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b465 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b882 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b8c7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b940 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3ba12 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bb33 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b986 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bb79 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bc12 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bc58 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b9cc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b51b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b587 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b5f3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b65f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bc9e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bd52 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bd98 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bdde /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3be24 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3be6a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3beb0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bf40 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bce4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c012 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bfcc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bf86 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c0a0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c0e6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c12c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c172 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c1b8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b7d9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3b804 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3bef6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c1fe /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c248 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c292 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c2dc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c322 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c368 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c3ae /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3c058 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 15835 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 15844 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 15776 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 157d3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1587d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1588f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 158c5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 158d4 CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<32u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch >::insert(gatb::core::tools::math::LargeInt<1> const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e0d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4ed3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 37db9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 37dc5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38462 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 384a9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 384f0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38847 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38876 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 388b1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 388bd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 879c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4ccca /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4cd36 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d155 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d19a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d213 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d2e5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d406 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d259 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d44c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d4e5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d52b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d29f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4cded /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4ce59 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4cec5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4cf31 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d571 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d625 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d66b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d6b1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d6f7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d73d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d783 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d813 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d5b7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d8e5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d89f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d859 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d973 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d9b9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d9ff /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4da45 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4da8b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d0ab /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d0d6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d7c9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4dad1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4db1b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4db65 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4dbaf /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4dbf5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4dc3b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4dc81 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d92b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b78a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b799 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b6cb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b728 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b7d2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b7e4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b81a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b829 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 21cc9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2c858 CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1dfb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1e58 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ec1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2d25b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2d267 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2d8da /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2d921 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2d968 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dc36 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dc65 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dca0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dcac /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 454c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41245 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4131a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41440 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4128c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41487 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41521 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41568 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 412d3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40e1e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40e8a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40ef6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40f62 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 415af /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4161e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41665 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 416ac /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 416f3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4173a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41781 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16d70 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1e3de CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1e95 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ef2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1f5b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1d3b7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1d3c3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1da60 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1daa7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1daee /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ddbc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ddeb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1de26 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1de32 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 46f3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2df12 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dfe7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e10d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2df59 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e154 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e1ee /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e235 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dfa0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2db55 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dbc1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dc2d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2dc99 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e27c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e2eb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e332 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e379 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e3c0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e407 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2e44e CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch::insert(gatb::core::tools::math::NativeInt64 const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4d93 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4df0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e59 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79572 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7957f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79c3c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79c87 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79cd2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79d1d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79d4e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79d8c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79d99 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset b722f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset b729c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7711 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d775b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d77da /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d78bb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d79f1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7825 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7a3c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7ad3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7b1e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7870 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d16a0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d170d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d177a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d17e7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7b69 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7c27 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7c72 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7cbd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7d08 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7d53 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7d9e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7e45 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7bb4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7f71 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7f26 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7edb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d8008 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d8053 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d809e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d80e9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d8134 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d19f1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d1a22 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7de9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d817f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d81db /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d8237 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d8285 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d82d0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d831b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d8366 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7fbc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 24ab9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2b9ff /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2ba0e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2b940 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2b99d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2ba47 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2ba59 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2ba8f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2ba9e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d7e90 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d83b1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d1a53 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset d1a81 ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: more undefined references to `__sync_add_and_fetch_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<128u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<96u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<64u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 5076 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 50d3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 513c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4df08 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4df15 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e5d2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e61d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e668 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6b3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e6e4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e722 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4e72f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79472 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 794df /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79907 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7994d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 799c7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79a9c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79bc2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79a0e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79c09 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79ca3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79cea /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79a55 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79597 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79604 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79671 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 796de /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79d31 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79de7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79e2e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79e75 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79ebc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79f03 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79f4a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79fdb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79d78 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a0b0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a069 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a022 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a13f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a186 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a1cd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a214 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a25b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79859 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79885 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 79f91 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a2a2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a2ec /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a336 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a380 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a3c7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a40e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a455 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 7a0f7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb7f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb8e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fac0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fb1d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbc7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fbd9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc0f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1fc1e ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o): in function `gatb::core::kmer::impl::ReadSuperKCommand<32u>::execute()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 331a2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 429d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 42fa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4363 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 28f21 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 28f2d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29548 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2958f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 295d6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2961d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2964c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29687 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29693 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3893c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 389a8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38dc6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38e0b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38e84 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38f56 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39077 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38eca /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 390bd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39156 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3919c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38f10 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38a5f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38acb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38b37 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38ba3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 391e2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39296 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 392dc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39322 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39368 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 393ae /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 393f4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39484 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39228 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39556 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39510 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 394ca /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 395e4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3962a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39670 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 396b6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 396fc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38d1d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38d48 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3943a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39742 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3978c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 397d6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39820 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39866 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 398ac /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 398f2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3959c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b003 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2177c ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 331a2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 429d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 42fa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4363 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 28f21 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 28f2d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29548 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2958f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 295d6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2961d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2964c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29687 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29693 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3893a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 389a6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38dc4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38e09 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38e82 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38f54 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39075 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38ec8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 390bb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39154 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3919a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38f0e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38a5d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38ac9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38b35 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38ba1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 391e0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39294 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 392da /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39320 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39366 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 393ac /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 393f2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39482 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39226 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39554 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3950e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 394c8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 395e2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39628 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3966e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 396b4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 396fa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38d1b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38d46 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39438 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39740 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3978a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 397d4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3981e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39864 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 398aa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 398f0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3959a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b003 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2177c ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 331a2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 429d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 42fa /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4363 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 28f21 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 28f2d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29548 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2958f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 295d6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2961d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2964c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29687 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29693 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3893c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 389a8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38dc6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38e0b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38e84 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38f56 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39077 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38eca /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 390bd /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39156 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3919c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38f10 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38a5f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38acb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38b37 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38ba3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 391e2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39296 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 392dc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39322 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39368 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 393ae /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 393f4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39484 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39228 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39556 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39510 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 394ca /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 395e4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3962a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39670 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 396b6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 396fc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38d1d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 38d48 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3943a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39742 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3978c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 397d6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39820 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 39866 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 398ac /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 398f2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 3959c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1b003 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2177c ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4153 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41b0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4219 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29c92 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 29c9e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2a355 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2a39c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2a3e3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2a42a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2a459 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2a494 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2a4a0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 401fc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40268 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40685 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 406ca /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40743 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40815 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40936 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40789 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4097c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40a15 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40a5b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 407cf /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4031e /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4038a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 403f6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40462 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40aa1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40b55 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40b9b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40be1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40c27 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40c6d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40cb3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40d43 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40ae7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40e15 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40dcf /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40d89 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40ea3 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40ee9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40f2f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40f75 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40fbb /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 405dc /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40607 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40cf9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41001 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4104b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41095 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 410df /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 41125 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 4116b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 411b1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 40e5b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16a98 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16aa7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 169d9 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16a36 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16ae0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16af2 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16b28 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 16b37 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 190e0 ../../lib/None/libgatbcore.a(DnaCoder.cpp.o): in function `DnaEncoder::~DnaEncoder()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:238: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:238: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:239: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(DnaCoder.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:239: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 201b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 2078 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 20e1 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset fd91 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset fd9d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1042c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 10473 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 104ba /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 10501 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 10530 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1056b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 10577 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a7f4 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a8c6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a9e7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a83a /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1aa2d /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1aac6 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ab0c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a880 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a43b /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a4a7 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a513 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1a57f /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ab52 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1abc0 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ac06 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ac4c /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ac92 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1acd8 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: DWARF error: could not find variable specification at offset 1ad1e ../../lib/None/libgatbcore.a(Histogram.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' collect2: error: ld returned 1 exit status make[4]: *** [test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make:440: bin/None/gatb-core-cppunit] Error 1 make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:399: test/unit/CMakeFiles/gatb-core-cppunit.dir/all] Error 2 make[3]: Leaving directory '/<>/obj-mipsel-linux-gnu' make[2]: *** [Makefile:155: all] Error 2 make[2]: Leaving directory '/<>/obj-mipsel-linux-gnu' dh_auto_build: error: cd obj-mipsel-linux-gnu && make -j1 "INSTALL=install --strip-program=true" returned exit code 2 make[1]: *** [debian/rules:21: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:15: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-08-07T12:47:47Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1731984 Build-Time: 2641 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 33 Job: gatb-core_1.4.2+dfsg-5 Machine Architecture: amd64 Package: gatb-core Package-Time: 2683 Source-Version: 1.4.2+dfsg-5 Space: 1731984 Status: attempted Version: 1.4.2+dfsg-5 -------------------------------------------------------------------------------- Finished at 2020-08-07T12:47:47Z Build needed 00:44:43, 1731984k disk space