sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir.einval.org +==============================================================================+ | gatb-core 1.4.2+dfsg-8 (i386) Mon, 30 May 2022 22:22:34 +0000 | +==============================================================================+ Package: gatb-core Version: 1.4.2+dfsg-8 Source Version: 1.4.2+dfsg-8 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-23a5c1c2-174e-408b-93c0-f27e88eac40e' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-mBQoeA/resolver-9D0hQY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main i386 Packages [9107 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9734 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [9055 kB] Fetched 28.1 MB in 7s (3839 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3044 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main gatb-core 1.4.2+dfsg-8 (dsc) [2317 B] Get:2 http://mirror.einval.org/debian sid/main gatb-core 1.4.2+dfsg-8 (tar) [2945 kB] Get:3 http://mirror.einval.org/debian sid/main gatb-core 1.4.2+dfsg-8 (diff) [97.3 kB] Fetched 3044 kB in 0s (31.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gatb-core-mBQoeA/gatb-core-1.4.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-mBQoeA' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [451 B] Get:5 copy:/<>/apt_archive ./ Packages [537 B] Fetched 1945 B in 0s (46.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism doxygen dpkg-cross dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-12-base:i386 gcc-12-cross-base gcc-i686-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:i386 intltool-debian libaec-dev:i386 libaec0:i386 libann0 libarchive-zip-perl libarchive13 libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libboost-dev:i386 libboost1.74-dev:i386 libbrotli1 libbrotli1:i386 libbsd0 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcairo2 libcdt5 libcgraph6 libclang-cpp11 libclang1-11 libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:i386 libcppunit-dev:i386 libcrypt-dev:i386 libcrypt1:i386 libcurl4 libcurl4:i386 libcurl4-openssl-dev:i386 libdatrie1 libdb5.3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1 libexpat1 libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgd3 libgfortran5:i386 libglib2.0-0 libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgraphite2-3 libgssapi-krb5-2:i386 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:i386 libhdf5-cpp-103-1:i386 libhdf5-dev:i386 libhdf5-fortran-102:i386 libhdf5-hl-100:i386 libhdf5-hl-cpp-100:i386 libhdf5-hl-fortran-100:i386 libhogweed6:i386 libice6 libicu71 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjbig0 libjpeg-dev:i386 libjpeg62-turbo libjpeg62-turbo:i386 libjpeg62-turbo-dev:i386 libjsoncpp-dev:i386 libjsoncpp25 libjsoncpp25:i386 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblab-gamut1 libldap-2.5-0 libldap-2.5-0:i386 liblerc3 libllvm11 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmd0 libncurses6 libncursesw6 libnettle8:i386 libnghttp2-14 libnghttp2-14:i386 libnsl-dev:i386 libnsl2:i386 libp11-kit0:i386 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpsl5:i386 libquadmath0:i386 libquadmath0-i386-cross librhash0 librtmp1 librtmp1:i386 libsasl2-2 libsasl2-2:i386 libsasl2-modules-db libsasl2-modules-db:i386 libsigsegv2 libsm6 libssh2-1 libssh2-1:i386 libssl-dev:i386 libssl3:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libsz2:i386 libtasn1-6:i386 libthai-data libthai0 libtiff5 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libuv1 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf procps sensible-utils ucf x11-common zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build cmake-format gcc-11-locales cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui binutils-multiarch g++-11-multilib-i686-linux-gnu gcc-11-doc gcc-11-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc:i386 libboost1.74-doc:i386 libboost-atomic1.74-dev:i386 libboost-chrono1.74-dev:i386 libboost-container1.74-dev:i386 libboost-context1.74-dev:i386 libboost-contract1.74-dev:i386 libboost-coroutine1.74-dev:i386 libboost-date-time1.74-dev:i386 libboost-exception1.74-dev:i386 libboost-fiber1.74-dev:i386 libboost-filesystem1.74-dev:i386 libboost-graph1.74-dev:i386 libboost-graph-parallel1.74-dev:i386 libboost-iostreams1.74-dev:i386 libboost-locale1.74-dev:i386 libboost-log1.74-dev:i386 libboost-math1.74-dev:i386 libboost-mpi1.74-dev:i386 libboost-mpi-python1.74-dev:i386 libboost-numpy1.74-dev:i386 libboost-program-options1.74-dev:i386 libboost-python1.74-dev:i386 libboost-random1.74-dev:i386 libboost-regex1.74-dev:i386 libboost-serialization1.74-dev:i386 libboost-stacktrace1.74-dev:i386 libboost-system1.74-dev:i386 libboost-test1.74-dev:i386 libboost-thread1.74-dev:i386 libboost-timer1.74-dev:i386 libboost-type-erasure1.74-dev:i386 libboost-wave1.74-dev:i386 libboost1.74-tools-dev:i386 libmpfrc++-dev:i386 libntl-dev:i386 libboost-nowide1.74-dev:i386 glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 libcppunit-doc:i386 libcurl4-doc:i386 libidn11-dev:i386 libkrb5-dev:i386 libldap2-dev:i386 librtmp-dev:i386 libssh2-1-dev:i386 pkg-config:i386 libgd-tools gnutls-bin:i386 krb5-doc:i386 krb5-user:i386 libhdf5-doc:i386 libssl-doc:i386 libstdc++-11-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx fonts-liberation ca-certificates ca-certificates:i386 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales:i386 libldap-common libldap-common:i386 libgpm2 publicsuffix publicsuffix:i386 libssl1.1 libsasl2-modules libsasl2-modules:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 d-shlibs debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism doxygen dpkg-cross dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-12-base:i386 gcc-12-cross-base gcc-i686-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:i386 intltool-debian libaec-dev:i386 libaec0:i386 libann0 libarchive-zip-perl libarchive13 libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libboost-dev:i386 libboost1.74-dev:i386 libbrotli1 libbrotli1:i386 libbsd0 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcairo2 libcdt5 libcgraph6 libclang-cpp11 libclang1-11 libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:i386 libcppunit-dev:i386 libcrypt-dev:i386 libcrypt1:i386 libcurl4 libcurl4:i386 libcurl4-openssl-dev:i386 libdatrie1 libdb5.3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1 libexpat1 libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgd3 libgfortran5:i386 libglib2.0-0 libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgraphite2-3 libgssapi-krb5-2:i386 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:i386 libhdf5-cpp-103-1:i386 libhdf5-dev:i386 libhdf5-fortran-102:i386 libhdf5-hl-100:i386 libhdf5-hl-cpp-100:i386 libhdf5-hl-fortran-100:i386 libhogweed6:i386 libice6 libicu71 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjbig0 libjpeg-dev:i386 libjpeg62-turbo libjpeg62-turbo:i386 libjpeg62-turbo-dev:i386 libjsoncpp-dev:i386 libjsoncpp25 libjsoncpp25:i386 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblab-gamut1 libldap-2.5-0 libldap-2.5-0:i386 liblerc3 libllvm11 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmd0 libncurses6 libncursesw6 libnettle8:i386 libnghttp2-14 libnghttp2-14:i386 libnsl-dev:i386 libnsl2:i386 libp11-kit0:i386 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpsl5:i386 libquadmath0:i386 libquadmath0-i386-cross librhash0 librtmp1 librtmp1:i386 libsasl2-2 libsasl2-2:i386 libsasl2-modules-db libsasl2-modules-db:i386 libsigsegv2 libsm6 libssh2-1 libssh2-1:i386 libssl-dev:i386 libssl3:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libsz2:i386 libtasn1-6:i386 libthai-data libthai0 libtiff5 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libuv1 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:i386 sensible-utils ucf x11-common zlib1g:i386 zlib1g-dev:i386 0 upgraded, 228 newly installed, 0 to remove and 0 not upgraded. Need to get 174 MB of archives. After this operation, 783 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b2 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libncurses6 arm64 6.3+20220423-2 [92.9 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libncursesw6 arm64 6.3+20220423-2 [121 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libprocps8 arm64 2:3.3.17-7+b1 [62.5 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 procps arm64 2:3.3.17-7+b1 [497 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-4 [295 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-4 [124 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-4 [66.9 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-6 [173 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.38-4 [145 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.6-1 [36.8 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.10.2-1 [1392 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.14-1 [37.0 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-6 [510 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libicu71 arm64 71.1-3 [9046 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.14+dfsg-1 [640 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libarchive13 arm64 3.6.0-1 [327 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b3 [270 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-6 [38.7 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg-6 [76.5 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libldap-2.5-0 arm64 2.5.12+dfsg-2 [215 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libnghttp2-14 arm64 1.47.0-1+b1 [72.5 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libcurl4 arm64 7.83.1-1+b1 [336 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libexpat1 arm64 2.4.8-1 [94.6 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 librhash0 arm64 1.4.2-1 [127 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libuv1 arm64 1.44.1-2 [132 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 dh-elpa-helper all 2.0.10 [11.3 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 emacsen-common all 3.0.4 [19.3 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 cmake-data all 3.23.2-1 [1939 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 cmake arm64 3.23.2-1 [5572 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 gcc-11-i686-linux-gnu-base arm64 11.3.0-3cross1 [209 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 cpp-11-i686-linux-gnu arm64 11.3.0-3cross1 [7866 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 cpp-i686-linux-gnu arm64 4:11.2.0-2 [17.0 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 binutils-i686-linux-gnu arm64 2.38-4 [2325 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.3.0-3cross1 [204 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 gcc-12-cross-base all 12.1.0-2cross1 [202 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libc6-i386-cross all 2.33-1cross1 [1526 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-i386-cross all 12.1.0-2cross1 [60.1 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libgomp1-i386-cross all 12.1.0-2cross1 [118 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libitm1-i386-cross all 12.1.0-2cross1 [27.1 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libatomic1-i386-cross all 12.1.0-2cross1 [7472 B] Get:56 http://mirror.einval.org/debian sid/main arm64 libasan6-i386-cross all 11.3.0-3cross1 [1928 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libstdc++6-i386-cross all 12.1.0-2cross1 [620 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libubsan1-i386-cross all 12.1.0-2cross1 [869 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libquadmath0-i386-cross all 12.1.0-2cross1 [227 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-i386-cross all 11.3.0-3cross1 [2333 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 gcc-11-i686-linux-gnu arm64 11.3.0-3cross1 [15.6 MB] Get:62 http://mirror.einval.org/debian sid/main arm64 gcc-i686-linux-gnu arm64 4:11.2.0-2 [1452 B] Get:63 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-i386-cross all 5.15.5-1cross1 [1576 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libc6-dev-i386-cross all 2.33-1cross1 [2170 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-i386-cross all 11.3.0-3cross1 [2018 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 g++-11-i686-linux-gnu arm64 11.3.0-3cross1 [8688 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 g++-i686-linux-gnu arm64 4:11.2.0-2 [1168 B] Get:68 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1 [326 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.27-1 [17.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-i386 all 12.9 [6704 B] Get:82 http://mirror.einval.org/debian sid/main arm64 d-shlibs all 0.104 [18.6 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.7.1 [195 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.7-4 [526 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.187-1 [178 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-6 [1260 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.7.1 [1071 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libmd0 arm64 1.0.4-1 [29.5 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libbsd0 arm64 0.11.6-1 [112 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 libedit2 arm64 3.1-20210910-1 [92.9 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libz3-4 arm64 4.8.12-1+b1 [6165 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libllvm11 arm64 1:11.1.0-6+b2 [14.7 MB] Get:101 http://mirror.einval.org/debian sid/main arm64 libclang-cpp11 arm64 1:11.1.0-6+b2 [7946 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libclang1-11 arm64 1:11.1.0-6+b2 [4545 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 libxapian30 arm64 1.4.18-4 [1014 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 doxygen arm64 1.9.1-2 [3892 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 libpng16-16 arm64 1.6.37-5 [284 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 libfreetype6 arm64 2.12.1+dfsg-2 [393 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 fontconfig-config all 2.13.1-4.4 [281 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 libfontconfig1 arm64 2.13.1-4.4 [347 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 fontconfig arm64 2.13.1-4.4 [417 kB] Get:111 http://mirror.einval.org/debian sid/main i386 gcc-11-base i386 11.3.0-3 [209 kB] Get:112 http://mirror.einval.org/debian sid/main i386 gcc-12-base i386 12.1.0-2 [207 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libann0 arm64 1.1.2+doc-7 [25.1 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libcdt5 arm64 2.42.2-6+b3 [61.4 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libcgraph6 arm64 2.42.2-6+b3 [83.0 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.2-1 [152 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libdeflate0 arm64 1.10-2 [61.0 kB] Get:118 http://mirror.einval.org/debian sid/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get:119 http://mirror.einval.org/debian sid/main arm64 liblerc3 arm64 3.0+ds-1 [97.1 kB] Get:120 http://mirror.einval.org/debian sid/main arm64 libwebp7 arm64 1.2.2-2+b1 [255 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libtiff5 arm64 4.4.0-2 [298 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:124 http://mirror.einval.org/debian sid/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 libx11-data all 2:1.7.5-1 [308 kB] Get:126 http://mirror.einval.org/debian sid/main arm64 libx11-6 arm64 2:1.7.5-1 [749 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 libgd3 arm64 2.3.0-2+b1 [127 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.72.1-1 [1334 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-5 [144 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 libpixman-1-0 arm64 0.40.0-1 [444 kB] Get:132 http://mirror.einval.org/debian sid/main arm64 libxcb-render0 arm64 1.14-3 [111 kB] Get:133 http://mirror.einval.org/debian sid/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB] Get:134 http://mirror.einval.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1 [51.6 kB] Get:135 http://mirror.einval.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get:136 http://mirror.einval.org/debian sid/main arm64 libcairo2 arm64 1.16.0-5 [648 kB] Get:137 http://mirror.einval.org/debian sid/main arm64 libltdl7 arm64 2.4.7-4 [401 kB] Get:138 http://mirror.einval.org/debian sid/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get:139 http://mirror.einval.org/debian sid/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get:140 http://mirror.einval.org/debian sid/main arm64 libharfbuzz0b arm64 2.7.4-1+b1 [1444 kB] Get:141 http://mirror.einval.org/debian sid/main arm64 libthai-data all 0.1.29-1 [176 kB] Get:142 http://mirror.einval.org/debian sid/main arm64 libdatrie1 arm64 0.2.13-2 [42.4 kB] Get:143 http://mirror.einval.org/debian sid/main arm64 libthai0 arm64 0.1.29-1 [56.2 kB] Get:144 http://mirror.einval.org/debian sid/main arm64 libpango-1.0-0 arm64 1.50.7+ds-1 [227 kB] Get:145 http://mirror.einval.org/debian sid/main arm64 libpangoft2-1.0-0 arm64 1.50.7+ds-1 [74.2 kB] Get:146 http://mirror.einval.org/debian sid/main arm64 libpangocairo-1.0-0 arm64 1.50.7+ds-1 [61.8 kB] Get:147 http://mirror.einval.org/debian sid/main arm64 libpathplan4 arm64 2.42.2-6+b3 [62.9 kB] Get:148 http://mirror.einval.org/debian sid/main arm64 libgvc6 arm64 2.42.2-6+b3 [631 kB] Get:149 http://mirror.einval.org/debian sid/main arm64 libgvpr2 arm64 2.42.2-6+b3 [200 kB] Get:150 http://mirror.einval.org/debian sid/main arm64 liblab-gamut1 arm64 2.42.2-6+b3 [221 kB] Get:151 http://mirror.einval.org/debian sid/main arm64 x11-common all 1:7.7+23 [252 kB] Get:152 http://mirror.einval.org/debian sid/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get:153 http://mirror.einval.org/debian sid/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get:154 http://mirror.einval.org/debian sid/main arm64 libxt6 arm64 1:1.2.1-1 [175 kB] Get:155 http://mirror.einval.org/debian sid/main arm64 libxmu6 arm64 2:1.1.3-3 [57.2 kB] Get:156 http://mirror.einval.org/debian sid/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] Get:157 http://mirror.einval.org/debian sid/main arm64 graphviz arm64 2.42.2-6+b3 [590 kB] Get:158 http://mirror.einval.org/debian sid/main i386 hdf5-helpers i386 1.10.7+repack-4+b1 [43.1 kB] Get:159 http://mirror.einval.org/debian sid/main i386 libgcc-s1 i386 12.1.0-2 [60.1 kB] Get:160 http://mirror.einval.org/debian sid/main i386 libc6 i386 2.33-7 [2790 kB] Get:161 http://mirror.einval.org/debian sid/main i386 libaec0 i386 1.0.6-1 [21.7 kB] Get:162 http://mirror.einval.org/debian sid/main i386 libsz2 i386 1.0.6-1 [7500 B] Get:163 http://mirror.einval.org/debian sid/main i386 libaec-dev i386 1.0.6-1 [20.7 kB] Get:164 http://mirror.einval.org/debian sid/main i386 libasan6 i386 11.3.0-3 [1934 kB] Get:165 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 12.1.0-2 [7704 B] Get:166 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 12.1.0-2 [121 kB] Get:167 http://mirror.einval.org/debian sid/main i386 libitm1 i386 12.1.0-2 [27.6 kB] Get:168 http://mirror.einval.org/debian sid/main i386 libstdc++6 i386 12.1.0-2 [663 kB] Get:169 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 12.1.0-2 [870 kB] Get:170 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 12.1.0-2 [227 kB] Get:171 http://mirror.einval.org/debian sid/main i386 libgcc-11-dev i386 11.3.0-3 [2334 kB] Get:172 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.17.11-1 [1560 kB] Get:173 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.27-1.1 [99.5 kB] Get:174 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.27-1.1 [129 kB] Get:175 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.5-2 [76.1 kB] Get:176 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.19.2-2+b2 [69.0 kB] Get:177 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.19.2-2+b2 [117 kB] Get:178 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-3 [16.0 kB] Get:179 http://mirror.einval.org/debian sid/main i386 libssl3 i386 3.0.3-5 [2032 kB] Get:180 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.19.2-2+b2 [391 kB] Get:181 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.19.2-2+b2 [177 kB] Get:182 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.2-2 [91.3 kB] Get:183 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:184 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.2-2 [201 kB] Get:185 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:186 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.33-7 [2172 kB] Get:187 http://mirror.einval.org/debian sid/main i386 libstdc++-11-dev i386 11.3.0-3 [2014 kB] Get:188 http://mirror.einval.org/debian sid/main i386 libboost1.74-dev i386 1.74.0-14+b1 [9538 kB] Get:189 http://mirror.einval.org/debian sid/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get:190 http://mirror.einval.org/debian sid/main i386 libbrotli1 i386 1.0.9-2+b3 [273 kB] Get:191 http://mirror.einval.org/debian sid/main i386 libcppunit-1.15-0 i386 1.15.1-4 [160 kB] Get:192 http://mirror.einval.org/debian sid/main i386 libcppunit-dev i386 1.15.1-4 [220 kB] Get:193 http://mirror.einval.org/debian sid/main i386 libunistring2 i386 1.0-1 [436 kB] Get:194 http://mirror.einval.org/debian sid/main i386 libidn2-0 i386 2.3.2-2 [96.4 kB] Get:195 http://mirror.einval.org/debian sid/main i386 libgmp10 i386 2:6.2.1+dfsg-3 [570 kB] Get:196 http://mirror.einval.org/debian sid/main i386 libnettle8 i386 3.7.3-1 [286 kB] Get:197 http://mirror.einval.org/debian sid/main i386 libhogweed6 i386 3.7.3-1 [323 kB] Get:198 http://mirror.einval.org/debian sid/main i386 libffi8 i386 3.4.2-4 [22.7 kB] Get:199 http://mirror.einval.org/debian sid/main i386 libp11-kit0 i386 0.24.1-1 [347 kB] Get:200 http://mirror.einval.org/debian sid/main i386 libtasn1-6 i386 4.18.0-4 [58.2 kB] Get:201 http://mirror.einval.org/debian sid/main i386 libgnutls30 i386 3.7.4-2 [1391 kB] Get:202 http://mirror.einval.org/debian sid/main i386 libdb5.3 i386 5.3.28+dfsg1-0.9 [747 kB] Get:203 http://mirror.einval.org/debian sid/main i386 libsasl2-modules-db i386 2.1.28+dfsg-6 [39.4 kB] Get:204 http://mirror.einval.org/debian sid/main i386 libsasl2-2 i386 2.1.28+dfsg-6 [81.2 kB] Get:205 http://mirror.einval.org/debian sid/main i386 libldap-2.5-0 i386 2.5.12+dfsg-2 [239 kB] Get:206 http://mirror.einval.org/debian sid/main i386 libnghttp2-14 i386 1.47.0-1+b1 [84.4 kB] Get:207 http://mirror.einval.org/debian sid/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get:208 http://mirror.einval.org/debian sid/main i386 zlib1g i386 1:1.2.11.dfsg-4 [93.0 kB] Get:209 http://mirror.einval.org/debian sid/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get:210 http://mirror.einval.org/debian sid/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get:211 http://mirror.einval.org/debian sid/main i386 libzstd1 i386 1.5.2+dfsg-1 [265 kB] Get:212 http://mirror.einval.org/debian sid/main i386 libcurl4 i386 7.83.1-1+b1 [389 kB] Get:213 http://mirror.einval.org/debian sid/main i386 libcurl4-openssl-dev i386 7.83.1-1+b1 [495 kB] Get:214 http://mirror.einval.org/debian sid/main i386 libgfortran5 i386 12.1.0-2 [698 kB] Get:215 http://mirror.einval.org/debian sid/main i386 libhdf5-103-1 i386 1.10.7+repack-4+b1 [1189 kB] Get:216 http://mirror.einval.org/debian sid/main i386 libhdf5-cpp-103-1 i386 1.10.7+repack-4+b1 [152 kB] Get:217 http://mirror.einval.org/debian sid/main i386 libhdf5-fortran-102 i386 1.10.7+repack-4+b1 [117 kB] Get:218 http://mirror.einval.org/debian sid/main i386 libhdf5-hl-100 i386 1.10.7+repack-4+b1 [95.9 kB] Get:219 http://mirror.einval.org/debian sid/main i386 libhdf5-hl-fortran-100 i386 1.10.7+repack-4+b1 [61.3 kB] Get:220 http://mirror.einval.org/debian sid/main i386 libhdf5-hl-cpp-100 i386 1.10.7+repack-4+b1 [41.0 kB] Get:221 http://mirror.einval.org/debian sid/main i386 zlib1g-dev i386 1:1.2.11.dfsg-4 [194 kB] Get:222 http://mirror.einval.org/debian sid/main i386 libjpeg62-turbo i386 1:2.1.2-1 [170 kB] Get:223 http://mirror.einval.org/debian sid/main i386 libjpeg62-turbo-dev i386 1:2.1.2-1 [306 kB] Get:224 http://mirror.einval.org/debian sid/main i386 libjpeg-dev i386 1:2.1.2-1 [74.7 kB] Get:225 http://mirror.einval.org/debian sid/main i386 libssl-dev i386 3.0.3-5 [2495 kB] Get:226 http://mirror.einval.org/debian sid/main i386 libhdf5-dev i386 1.10.7+repack-4+b1 [2630 kB] Get:227 http://mirror.einval.org/debian sid/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get:228 http://mirror.einval.org/debian sid/main i386 libjsoncpp-dev i386 1.9.5-4 [26.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 174 MB in 2s (76.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12425 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../001-libncurses6_6.3+20220423-2_arm64.deb ... Unpacking libncurses6:arm64 (6.3+20220423-2) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../002-libncursesw6_6.3+20220423-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.3+20220423-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-7+b1_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-7+b1) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-7+b1_arm64.deb ... Unpacking procps (2:3.3.17-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17_all.deb ... 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Setting up hdf5-helpers:i386 (1.10.7+repack-4+b1) ... Setting up libdatrie1:arm64 (0.2.13-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up cpp-11-i686-linux-gnu (11.3.0-3cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.72.1-1) ... No schema files found: doing nothing. Setting up binutils-i686-linux-gnu (2.38-4) ... Setting up libdebhelper-perl (13.7.1) ... Setting up libbrotli1:arm64 (1.0.9-2+b3) ... Setting up liblab-gamut1:arm64 (2.42.2-6+b3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:arm64 (1.47.0-1+b1) ... Setting up libmagic1:arm64 (1:5.41-4) ... Setting up libdeflate0:arm64 (1.10-2) ... Setting up linux-libc-dev:i386 (5.17.11-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-6) ... Setting up file (1:5.41-4) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.4-1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++6-i386-cross (12.1.0-2cross1) ... Setting up libclang-cpp11 (1:11.1.0-6+b2) ... Setting up dh-autoreconf (20) ... Setting up doxygen (1.9.1-2) ... Setting up libxt6:arm64 (1:1.2.1-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.23.2-1) ... Setting up libfontconfig1:arm64 (2.13.1-4.4) ... Setting up fontconfig (2.13.1-4.4) ... Regenerating fonts cache... done. Setting up libxmu6:arm64 (2:1.1.3-3) ... Setting up libpango-1.0-0:arm64 (1.50.7+ds-1) ... Setting up debhelper (13.7.1) ... Setting up libubsan1-i386-cross (12.1.0-2cross1) ... Setting up libxaw7:arm64 (2:1.0.14-1) ... Setting up libcairo2:arm64 (1.16.0-5) ... Setting up libgd3:arm64 (2.3.0-2+b1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libpangoft2-1.0-0:arm64 (1.50.7+ds-1) ... 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Setting up libhdf5-dev:i386 (1.10.7+repack-4+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libboost-dev:i386 (1.74.0.3) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.38-4 dpkg-dev_1.21.8 g++-11_11.3.0-3 gcc-11_11.3.0-3 libc6-dev_2.33-7 libstdc++-11-dev_11.3.0-3 libstdc++-11-dev-i386-cross_11.3.0-3cross1 libstdc++6_12.1.0-2 libstdc++6-i386-cross_12.1.0-2cross1 linux-libc-dev_5.17.11-1 Package versions: adduser_3.121 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38-4 binutils-aarch64-linux-gnu_2.38-4 binutils-common_2.38-4 binutils-i686-linux-gnu_2.38-4 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 cmake_3.23.2-1 cmake-data_3.23.2-1 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.3.0-3 cpp-11-i686-linux-gnu_11.3.0-3cross1 cpp-i686-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-i386_12.9 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 doxygen_1.9.1-2 dpkg_1.21.8 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.8 dwz_0.14-1 emacsen-common_3.0.4 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2 g++-11_11.3.0-3 g++-11-i686-linux-gnu_11.3.0-3cross1 g++-i686-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-11_11.3.0-3 gcc-11-base_11.3.0-3 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libxau6_1:1.0.9-1 libxaw7_2:1.0.14-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1 libxmu6_2:1.1.3-3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libz3-4_4.8.12-1+b1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.17.11-1 linux-libc-dev-i386-cross_5.15.5-1cross1 login_1:4.11.1+dfsg1-2 lsb-base_11.2 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 mount_2.38-4 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.34_5.34.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7+b1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 util-linux_2.38-4 util-linux-extra_2.38-4 x11-common_1:7.7+23 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gatb-core Binary: gatb-core, libgatbcore3, libgatbcore-dev, gatb-core-testdata Architecture: any all Version: 1.4.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Nadiya Sitdykova , Andreas Tille Homepage: https://github.com/GATB/gatb-core Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/gatb-core Vcs-Git: https://salsa.debian.org/med-team/gatb-core.git Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz Package-List: gatb-core deb science optional arch=any gatb-core-testdata deb science optional arch=all libgatbcore-dev deb libdevel optional arch=any libgatbcore3 deb libs optional arch=any Checksums-Sha1: cd277a39a042d1b5b3dfdf0b0196b748b7fdb301 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 084a9248b0f68726c15bd51488cd207f32c9e83f 97320 gatb-core_1.4.2+dfsg-8.debian.tar.xz Checksums-Sha256: cc72101654da4254253c3c74f02651e3b2cfbf49af95a849d21efdb13481fc66 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 94aa3cfa4b81299d4c0417ac4f5a1c05167ddea35c5bda946e7c75b82e09808d 97320 gatb-core_1.4.2+dfsg-8.debian.tar.xz Files: ac56735b1e461083d9830d8e1c2a9108 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz f14e7f26c8837d1cd7b1bfd4d423f85d 97320 gatb-core_1.4.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHC8uURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHu3w//elNJ7mJcqp7IAfjEYpQ4QwTYqZzGCpNW EwbHq3Toi4L5fPkHdh44a6O0CBPjK2MBl8deEo3+MPfoEKQTgjdYXC9RT4A14n46 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signature ./gatb-core_1.4.2+dfsg-8.dsc dpkg-source: info: extracting gatb-core in /<> dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse dpkg-source: info: applying use-int-as-return-of-fgetc.patch dpkg-source: info: applying gatbCoreCompileMinia.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-23a5c1c2-174e-408b-93c0-f27e88eac40e SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu ../gatb-core -- The C compiler identification is GNU 11.3.0 -- The CXX compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - failed -- Options: -std=c++11 -Wno-invalid-offsetof -- HDF5 C compiler wrapper is unable to compile a minimal HDF5 program. -- Found HDF5: /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so (found version "1.10.7") -- HDF5_LIBRARIES="/usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- HDF5 C compiler wrapper is unable to compile a minimal HDF5 program. -- Found HDF5: /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so (found version "1.10.7") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-i686-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -a cd obj-i686-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -S/<>/gatb-core -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles /<>/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-i686-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/src /<>/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-i686-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/<>/obj-i686-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::createBloom()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:323:40: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 323 | getInfo()->add (0, "Abundance threshold"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:328:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 328 | getInfo()->add (0, "Abundance threshold"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::executeCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:404:36: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 404 | getInfo()->add (0, "Input format: FastQ"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:410:30: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 410 | getInfo()->add (0, "Quality compression: LOSSLESS mode"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:412:30: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 412 | getInfo()->add (0, "Quality compression: lossy mode (use '-lossless' for lossless compression)"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:422:36: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 422 | getInfo()->add (0, "Input format: FastA"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:429:36: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 429 | getInfo()->add (0, "Input format: unknown. Input extension must be one among fasta (.fa, .fasta) or fastq (.fq, .fastq)"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::endCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:727:23: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 727 | getInfo()->add(0, "End compression"); | ^~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::endHeaderCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:883:27: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 883 | getInfo()->add(0, "End Header compression"); | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::endDnaCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:970:21: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 970 | getInfo()->add(0, "End Sequence compression"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::executeDecompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:1429:23: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 1429 | getInfo()->add(0, "Decompression"); | ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘long long int’ [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | long long int | long int | %lld [ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 128]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 128]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 32]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 32]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 64]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 64]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 96]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 96]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 43%] Linking CXX static library ../lib/None/libgatbcore.a cd /<>/obj-i686-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /<>/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o" 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"CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o" /usr/bin/i686-linux-gnu-ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/<>/obj-i686-linux-gnu' [ 43%] Built target gatbcore-static make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/src /<>/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-i686-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/<>/obj-i686-linux-gnu' [ 43%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 63%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::createBloom()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:323:40: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 323 | getInfo()->add (0, "Abundance threshold"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:328:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 328 | getInfo()->add (0, "Abundance threshold"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::executeCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:404:36: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 404 | getInfo()->add (0, "Input format: FastQ"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:410:30: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 410 | getInfo()->add (0, "Quality compression: LOSSLESS mode"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:412:30: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 412 | getInfo()->add (0, "Quality compression: lossy mode (use '-lossless' for lossless compression)"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:422:36: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 422 | getInfo()->add (0, "Input format: FastA"); | ^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:429:36: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 429 | getInfo()->add (0, "Input format: unknown. Input extension must be one among fasta (.fa, .fasta) or fastq (.fq, .fastq)"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::endCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:727:23: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 727 | getInfo()->add(0, "End compression"); | ^~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::endHeaderCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:883:27: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 883 | getInfo()->add(0, "End Header compression"); | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::endDnaCompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:970:21: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 970 | getInfo()->add(0, "End Sequence compression"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function ‘void Leon::executeDecompression()’: /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:1429:23: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 1429 | getInfo()->add(0, "Decompression"); | ^~~~~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘long long int’ [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | long long int | long int | %lld [ 67%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 72%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 72%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 72%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<128>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 128]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 128]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<32>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 32]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 32]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<64>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 64]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 64]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 153 | result.add (0, "kmers"); | ^~~~~~~ /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<96>]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 96]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 172 | result.add (0, "partitions"); | ^~~~~~~~~~~~ In file included from /<>/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 96]’: /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here /<>/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:7: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 82%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 82%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 83%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 83%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function ‘static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()’: /<>/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ [ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 86%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 86%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-i686-linux-gnu/src && /usr/bin/i686-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 86%] Linking CXX shared library ../lib/None/libgatbcore.so cd /<>/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o" 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"CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o" cd /<>/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so make[4]: Leaving directory '/<>/obj-i686-linux-gnu' [ 86%] Built target gatbcore-dynamic make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/test/unit /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/test/unit /<>/obj-i686-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-i686-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[4]: Entering directory '/<>/obj-i686-linux-gnu' [ 86%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestBank.cpp /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample1_aux(const string&, gatb::core::bank::impl::BankFasta::Iterator::CommentMode_e)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:118:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 118 | snprintf (buffer, sizeof(buffer), "seq%ld%s", i+1, (mode == BankFasta::Iterator::FULL ? " generic" : "")); | ~~^ ~~~ | | | | | size_t {aka unsigned int} | long int | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample2_aux(const string&)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:187:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 187 | snprintf (buffer, sizeof(buffer), "seq%ld", nbSeq+1); | ~~^ ~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_perf1()’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘gatb::core::system::ITime::Value’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~ | | | gatb::core::system::ITime::Value {aka long long unsigned int} [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestLeon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/test/unit/src/bank/TestLeon.cpp:32: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestSequence.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -c /<>/gatb-core/test/unit/src/bcalm/TestBcalm.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDSK.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDebloom.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmer.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmerBank.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp:27: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -c /<>/gatb-core/test/unit/src/main.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -c /<>/gatb-core/test/unit/src/system/TestSystem.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestBag.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestCollection.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestContainer.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestIterable.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -c /<>/gatb-core/test/unit/src/tools/designpattern/TestIterators.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -c /<>/gatb-core/test/unit/src/tools/math/TestMath.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -c /<>/gatb-core/test/unit/src/tools/misc/TestMisc.cpp [ 96%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -c /<>/gatb-core/test/unit/src/tools/storage/TestStorage.cpp [ 96%] Linking CXX executable ../../bin/None/gatb-core-cppunit cd /<>/obj-i686-linux-gnu/test/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-core-cppunit.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o" -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libcppunit.so make[4]: Leaving directory '/<>/obj-i686-linux-gnu' [ 96%] Built target gatb-core-cppunit make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/tools /<>/obj-i686-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-i686-linux-gnu' make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/build make[4]: Entering directory '/<>/obj-i686-linux-gnu' [ 97%] Building CXX object tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o cd /<>/obj-i686-linux-gnu/tools && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /<>/gatb-core/tools/dbgh5.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/tools/dbgh5.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/tools/dbgh5.cpp: In function ‘void sendEmail(gatb::core::tools::misc::IProperties*, gatb::core::tools::misc::IProperties*)’: /<>/gatb-core/tools/dbgh5.cpp:127:13: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | ::system (cmd.str().c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../bin/None/dbgh5 cd /<>/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so make[4]: Leaving directory '/<>/obj-i686-linux-gnu' [ 97%] Built target dbgh5 make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/tools /<>/obj-i686-linux-gnu/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-i686-linux-gnu' make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/<>/obj-i686-linux-gnu' [ 98%] Building CXX object tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /<>/obj-i686-linux-gnu/tools && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /<>/gatb-core/tools/dbginfo.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/tools/dbginfo.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 98%] Linking CXX executable ../bin/None/dbginfo cd /<>/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so make[4]: Leaving directory '/<>/obj-i686-linux-gnu' [ 98%] Built target dbginfo make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/tools /<>/obj-i686-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-i686-linux-gnu' make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build make[4]: Entering directory '/<>/obj-i686-linux-gnu' [ 98%] Building CXX object tools/CMakeFiles/leon.dir/leon.cpp.o cd /<>/obj-i686-linux-gnu/tools && /usr/bin/i686-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-i686-linux-gnu/include -I/<>/obj-i686-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT tools/CMakeFiles/leon.dir/leon.cpp.o -MF CMakeFiles/leon.dir/leon.cpp.o.d -o CMakeFiles/leon.dir/leon.cpp.o -c /<>/gatb-core/tools/leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/tools/leon.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [100%] Linking CXX executable ../bin/None/leon cd /<>/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so make[4]: Leaving directory '/<>/obj-i686-linux-gnu' [100%] Built target leon make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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[100%] Built target thirdparty_copy make[3]: Leaving directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-i686-linux-gnu' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=gatb-core" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=gatb-core dh_prep -a -O--sourcedirectory=gatb-core dh_auto_install -a -O--sourcedirectory=gatb-core cd obj-i686-linux-gnu && make -j1 install DESTDIR=/<>/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -S/<>/gatb-core -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading3.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading4.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/observer1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators5.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading6.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading1.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading5.cpp -- Installing: 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/<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank22.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank27.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank24.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank12.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank25.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank13.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank16.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank21.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank18.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank8.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/protos -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/protos/MicroSNP.cpp -- Installing: /<>/debian/tmp/usr/share/doc/gatb-core/examples/protos/histo2D.cpp -- Installing: /<>/debian/tmp/usr/./README.txt -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.a -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.so.3 -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.so -- Installing: /<>/debian/tmp/usr/include -- Installing: /<>/debian/tmp/usr/include/gatb -- Installing: /<>/debian/tmp/usr/include/gatb/template -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2 -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/ographBin.h -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/logging.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/binSeq.h -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/ograph.h -- Installing: /<>/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/gatb_core.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BagFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BooPHF.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/IterableHelpers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/IteratorFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/ContainerSet.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/Hash16.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/MapMPHF.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Container.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Collection.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Iterable.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/collections/api/Bag.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/Integer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/api -- Installing: /<>/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Model.pri -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/api -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/bank/api/IBank.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/System.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/IThread.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/ITime.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/Exception.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/types.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/IMemory.hpp -- Installing: /<>/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /<>/debian/tmp/usr/test/gatb-core-cppunit -- Set runtime path of "/<>/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /<>/debian/tmp/usr/test//db -- Installing: /<>/debian/tmp/usr/test//db/album.txt -- Installing: /<>/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/reads1.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/query.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/reads1.fa -- Installing: /<>/debian/tmp/usr/test//db/sample1.fa -- Installing: /<>/debian/tmp/usr/test//db/leon1.fastq -- Installing: /<>/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /<>/debian/tmp/usr/test//db/sample1.fa.gz -- Installing: /<>/debian/tmp/usr/test//db/sample.fastq -- Installing: /<>/debian/tmp/usr/test//db/microsnp.fa -- Installing: /<>/debian/tmp/usr/test//db/reads2.fa -- Installing: /<>/debian/tmp/usr/test//db/README.md -- Installing: /<>/debian/tmp/usr/test//db/reads1_list_ids.txt -- Installing: /<>/debian/tmp/usr/test//db/leon2.fastq.leon-ref -- Installing: /<>/debian/tmp/usr/test//db/sample.fastq.gz -- Installing: /<>/debian/tmp/usr/test//db/query.fa -- Installing: /<>/debian/tmp/usr/test//db/celegans_reads.h5 -- Installing: /<>/debian/tmp/usr/test//db/leon2.fastq -- Installing: /<>/debian/tmp/usr/test//db/sample2.fa -- Installing: /<>/debian/tmp/usr/bin/dbgh5 -- Set runtime path of "/<>/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /<>/debian/tmp/usr/bin/dbginfo -- Set runtime path of "/<>/debian/tmp/usr/bin/dbginfo" to "" -- Installing: /<>/debian/tmp/usr/bin/leon -- Set runtime path of "/<>/debian/tmp/usr/bin/leon" to "" -- Installing: /<>/debian/tmp/usr/include/BooPHF -- Installing: /<>/debian/tmp/usr/include/BooPHF/BooPHF.h make[1]: Leaving directory '/<>/obj-i686-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev gatb-core/cmake usr/lib \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgatbcore-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libgatbcore3/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.a debian/libgatbcore-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.so debian/libgatbcore-dev/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.so.3 debian/libgatbcore3/usr/lib/i386-linux-gnu PKGDEV=libgatbcore-dev PKGSHL=libgatbcore3 install -d -m 755 debian/libgatbcore-dev/usr mv debian/tmp/usr/include debian/libgatbcore-dev/usr install -d -m 755 debian/libgatbcore-dev/usr/lib/i386-linux-gnu mv gatb-core/cmake debian/libgatbcore-dev/usr/lib/i386-linux-gnu mkdir -p debian/gatb-core/usr/lib/gatb-core dh_install -a make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=gatb-core dh_installchangelogs -a -O--sourcedirectory=gatb-core dh_installexamples -a -O--sourcedirectory=gatb-core dh_installman -a -O--sourcedirectory=gatb-core dh_installsystemduser -a -O--sourcedirectory=gatb-core dh_perl -a -O--sourcedirectory=gatb-core dh_link -a -O--sourcedirectory=gatb-core dh_strip_nondeterminism -a -O--sourcedirectory=gatb-core dh_compress -a -O--sourcedirectory=gatb-core dh_fixperms -a -O--sourcedirectory=gatb-core debian/rules override_dh_missing make[1]: Entering directory '/<>' # test data are installed manually from main source to enable Architecture all builds rm -rf debian/tmp/usr/test/db dh_missing make[1]: Leaving directory '/<>' dh_dwz -a -O--sourcedirectory=gatb-core dh_strip -a -O--sourcedirectory=gatb-core dh_makeshlibs -a -O--sourcedirectory=gatb-core dh_shlibdeps -a -O--sourcedirectory=gatb-core dpkg-shlibdeps: warning: symbol gzrewind used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pcreate used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_shuffle used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tcreate used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzseek used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Fopen used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Aexists used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzprintf used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Sselect_hyperslab used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 58 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--sourcedirectory=gatb-core dh_gencontrol -a -O--sourcedirectory=gatb-core dh_md5sums -a -O--sourcedirectory=gatb-core dh_builddeb -a -O--sourcedirectory=gatb-core dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-8_i386.deb'. dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb'. dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-8_i386.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb'. dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-8_i386.deb'. dpkg-genbuildinfo --build=any -O../gatb-core_1.4.2+dfsg-8_i386.buildinfo dpkg-genchanges --build=any -O../gatb-core_1.4.2+dfsg-8_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-05-31T00:32:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ gatb-core_1.4.2+dfsg-8_i386.changes: ------------------------------------ Format: 1.8 Date: Wed, 22 Dec 2021 09:34:27 +0100 Source: gatb-core Binary: gatb-core gatb-core-dbgsym libgatbcore-dev libgatbcore3 libgatbcore3-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 1.4.2+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: gatb-core - Genome Analysis Toolbox with de-Bruijn graph libgatbcore-dev - development library of the Genome Analysis Toolbox libgatbcore3 - dynamic library of the Genome Analysis Toolbox Closes: 1002217 Changes: gatb-core (1.4.2+dfsg-8) unstable; urgency=medium . * Fix symbols file Closes: #1002217 Checksums-Sha1: 9236045cc92c1c85740909ed325e0fdfd358fd68 88842316 gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb ae29c293e7a1885b32338470f38c22bd6506b9c6 9394 gatb-core_1.4.2+dfsg-8_i386.buildinfo 47beea7838336e231f6ec6375b21134233ebc714 2605592 gatb-core_1.4.2+dfsg-8_i386.deb 1ae745ae002467db9a8c2321007c6470e1d05b39 4070124 libgatbcore-dev_1.4.2+dfsg-8_i386.deb 8613c72e8852a6f11082709a27ca45d8ee910508 49852716 libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb ea2f2630ba5be7248f413a314be3c687a68207b8 1880204 libgatbcore3_1.4.2+dfsg-8_i386.deb Checksums-Sha256: f4dbe4a0f6d9b425bc98ab7afff70da6564b8c9a5df9faf251428ebbaa73c6e5 88842316 gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb 805c2ced85ab5710196865507723a0ed1cef677bd1eba6a45f11ca54af4eb587 9394 gatb-core_1.4.2+dfsg-8_i386.buildinfo 98727f207aae2051df5d638240e5f007d7bbf8d8b9967abe408200f18db99c4e 2605592 gatb-core_1.4.2+dfsg-8_i386.deb 79283a14f9c75adb45eb5c55def28da6ec759408f23ecf94da1f420ea72c7652 4070124 libgatbcore-dev_1.4.2+dfsg-8_i386.deb abc41b2eae00aeb61868ea888348688f90ce7637d4e1c43523affa2ebe47aad7 49852716 libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb 1b0a4ec68b6b7069f0e71522373d83adbdeddd2db66f11bab99e1ce693305adb 1880204 libgatbcore3_1.4.2+dfsg-8_i386.deb Files: 55bfd3739db34136a26a930d9ffb6315 88842316 debug optional gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb 09eb09cbf883cc9373b4c2d24f90c3ee 9394 science optional gatb-core_1.4.2+dfsg-8_i386.buildinfo e940b141e03d40d519b5f7711cbae4fc 2605592 science optional gatb-core_1.4.2+dfsg-8_i386.deb ba9c2c82807cb183a94426b938f76bb4 4070124 libdevel optional libgatbcore-dev_1.4.2+dfsg-8_i386.deb 683f28323c1173590300e059915cc750 49852716 debug optional libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb f80d761f965ada783b781a71ff67f294 1880204 libs optional libgatbcore3_1.4.2+dfsg-8_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: gatb-core Binary: gatb-core gatb-core-dbgsym libgatbcore-dev libgatbcore3 libgatbcore3-dbgsym Architecture: i386 Version: 1.4.2+dfsg-8 Checksums-Md5: 55bfd3739db34136a26a930d9ffb6315 88842316 gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb e940b141e03d40d519b5f7711cbae4fc 2605592 gatb-core_1.4.2+dfsg-8_i386.deb ba9c2c82807cb183a94426b938f76bb4 4070124 libgatbcore-dev_1.4.2+dfsg-8_i386.deb 683f28323c1173590300e059915cc750 49852716 libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb f80d761f965ada783b781a71ff67f294 1880204 libgatbcore3_1.4.2+dfsg-8_i386.deb Checksums-Sha1: 9236045cc92c1c85740909ed325e0fdfd358fd68 88842316 gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb 47beea7838336e231f6ec6375b21134233ebc714 2605592 gatb-core_1.4.2+dfsg-8_i386.deb 1ae745ae002467db9a8c2321007c6470e1d05b39 4070124 libgatbcore-dev_1.4.2+dfsg-8_i386.deb 8613c72e8852a6f11082709a27ca45d8ee910508 49852716 libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb ea2f2630ba5be7248f413a314be3c687a68207b8 1880204 libgatbcore3_1.4.2+dfsg-8_i386.deb Checksums-Sha256: f4dbe4a0f6d9b425bc98ab7afff70da6564b8c9a5df9faf251428ebbaa73c6e5 88842316 gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb 98727f207aae2051df5d638240e5f007d7bbf8d8b9967abe408200f18db99c4e 2605592 gatb-core_1.4.2+dfsg-8_i386.deb 79283a14f9c75adb45eb5c55def28da6ec759408f23ecf94da1f420ea72c7652 4070124 libgatbcore-dev_1.4.2+dfsg-8_i386.deb abc41b2eae00aeb61868ea888348688f90ce7637d4e1c43523affa2ebe47aad7 49852716 libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb 1b0a4ec68b6b7069f0e71522373d83adbdeddd2db66f11bab99e1ce693305adb 1880204 libgatbcore3_1.4.2+dfsg-8_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Tue, 31 May 2022 00:32:10 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.121), apt (= 2.5.0), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6.1), binutils (= 2.38-4), binutils-aarch64-linux-gnu (= 2.38-4), binutils-common (= 2.38-4), bsdextrautils (= 2.38-4), bsdutils (= 1:2.38-4), build-essential (= 12.9), bzip2 (= 1.0.8-5), cmake (= 3.23.2-1), cmake-data (= 3.23.2-1), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.3.0-3), d-shlibs (= 0.104), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.7.1), debian-archive-keyring (= 2021.1.1), debianutils (= 5.7-0.2), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.10), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), doxygen (= 1.9.1-2), dpkg (= 1.21.8), dpkg-dev (= 1.21.8), dwz (= 0.14-1), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.9.0-3), fontconfig (= 2.13.1-4.4), fontconfig-config (= 2.13.1-4.4), fonts-dejavu-core (= 2.37-2), g++ (= 4:11.2.0-2), g++-11 (= 11.3.0-3), gcc (= 4:11.2.0-2), gcc-11 (= 11.3.0-3), gcc-11-base (= 11.3.0-3), gcc-12-base (= 12.1.0-2), gettext (= 0.21-6), gettext-base (= 0.21-6), gpgv (= 2.2.35-2), graphviz (= 2.42.2-6+b3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hdf5-helpers (= 1.10.7+repack-4+b1), hostname (= 3.23), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libann0 (= 1.1.2+doc-7), libapt-pkg6.0 (= 2.5.0), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1), libasan6 (= 11.3.0-3), libatomic1 (= 12.1.0-2), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38-4), libblkid1 (= 2.38-4), libboost-dev (= 1.74.0.3), libboost1.74-dev (= 1.74.0-14+b1), libbrotli1 (= 1.0.9-2+b3), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-7), libc-dev-bin (= 2.33-7), libc6 (= 2.33-7), libc6-dev (= 2.33-7), libcairo2 (= 1.16.0-5), libcap-ng0 (= 0.7.9-2.2+b2), libcap2 (= 1:2.44-1), libcc1-0 (= 12.1.0-2), libcdt5 (= 2.42.2-6+b3), libcgraph6 (= 2.42.2-6+b3), libclang-cpp11 (= 1:11.1.0-6+b2), libclang1-11 (= 1:11.1.0-6+b2), libcom-err2 (= 1.46.5-2), libcppunit-1.15-0 (= 1.15.1-4), libcppunit-dev (= 1.15.1-4), libcrypt-dev (= 1:4.4.27-1.1), libcrypt1 (= 1:4.4.27-1.1), libctf-nobfd0 (= 2.38-4), libctf0 (= 2.38-4), libcurl4 (= 7.83.1-1+b1), libcurl4-openssl-dev (= 7.83.1-1+b1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.262), libdebhelper-perl (= 13.7.1), libdeflate0 (= 1.10-2), libdpkg-perl (= 1.21.8), libedit2 (= 3.1-20210910-1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.4), libfreetype6 (= 2.12.1+dfsg-2), libfribidi0 (= 1.0.8-2.1), libgcc-11-dev (= 11.3.0-3), libgcc-s1 (= 12.1.0-2), libgcrypt20 (= 1.10.1-2), libgd3 (= 2.3.0-2+b1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12.1.0-2), libglib2.0-0 (= 2.72.1-1), libgmp10 (= 2:6.2.1+dfsg-3), libgnutls30 (= 3.7.4-2), libgomp1 (= 12.1.0-2), libgpg-error0 (= 1.45-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.19.2-2+b2), libgts-0.7-5 (= 0.7.6+darcs121130-5), libgvc6 (= 2.42.2-6+b3), libgvpr2 (= 2.42.2-6+b3), libharfbuzz0b (= 2.7.4-1+b1), libhdf5-103-1 (= 1.10.7+repack-4+b1), libhdf5-cpp-103-1 (= 1.10.7+repack-4+b1), libhdf5-dev (= 1.10.7+repack-4+b1), libhdf5-fortran-102 (= 1.10.7+repack-4+b1), libhdf5-hl-100 (= 1.10.7+repack-4+b1), libhdf5-hl-cpp-100 (= 1.10.7+repack-4+b1), libhdf5-hl-fortran-100 (= 1.10.7+repack-4+b1), libhogweed6 (= 3.7.3-1), libhwasan0 (= 12.1.0-2), libice6 (= 2:1.0.10-1), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 12.1.0-2), libjbig0 (= 2.1-3.1+b2), libjpeg-dev (= 1:2.1.2-1), libjpeg62-turbo (= 1:2.1.2-1), libjpeg62-turbo-dev (= 1:2.1.2-1), libjsoncpp-dev (= 1.9.5-4), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.19.2-2+b2), libkeyutils1 (= 1.6.1-3), libkrb5-3 (= 1.19.2-2+b2), libkrb5support0 (= 1.19.2-2+b2), liblab-gamut1 (= 2.42.2-6+b3), libldap-2.5-0 (= 2.5.12+dfsg-2), liblerc3 (= 3.0+ds-1), libllvm11 (= 1:11.1.0-6+b2), liblsan0 (= 12.1.0-2), libltdl7 (= 2.4.7-4), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-1), libmount1 (= 2.38-4), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.47.0-1+b1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13), libpam-modules-bin (= 1.4.0-13), libpam-runtime (= 1.4.0-13), libpam0g (= 1.4.0-13), libpango-1.0-0 (= 1.50.7+ds-1), libpangocairo-1.0-0 (= 1.50.7+ds-1), libpangoft2-1.0-0 (= 1.50.7+ds-1), libpathplan4 (= 2.42.2-6+b3), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-4), libpipeline1 (= 1.5.6-1), libpixman-1-0 (= 0.40.0-1), libpng16-16 (= 1.6.37-5), libprocps8 (= 2:3.3.17-7+b1), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.1.0-2), librhash0 (= 1.4.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-6), libsasl2-modules-db (= 2.1.28+dfsg-6), libseccomp2 (= 2.5.4-1), libselinux1 (= 3.3-1+b2), libsemanage-common (= 3.3-1), libsemanage2 (= 3.3-1+b2), libsepol2 (= 3.3-1), libsigsegv2 (= 2.14-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.38-4), libssh2-1 (= 1.10.0-3+b1), libssl-dev (= 3.0.3-5), libssl3 (= 3.0.3-5), libstdc++-11-dev (= 11.3.0-3), libstdc++6 (= 12.1.0-2), libsub-override-perl (= 0.09-2), libsystemd0 (= 251.1-1), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libthai-data (= 0.1.29-1), libthai0 (= 0.1.29-1), libtiff5 (= 4.4.0-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3), libubsan1 (= 12.1.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 251.1-1), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4), libuv1 (= 1.44.1-2), libwebp7 (= 1.2.2-2+b1), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libxapian30 (= 1.4.18-4), libxau6 (= 1:1.0.9-1), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.14-3), libxcb-shm0 (= 1.14-3), libxcb1 (= 1.14-3), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.4-1), libxml2 (= 2.9.14+dfsg-1), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1), libxrender1 (= 1:0.9.10-1), libxt6 (= 1:1.2.1-1), libxxhash0 (= 0.8.1-1), libz3-4 (= 4.8.12-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.17.11-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2), patch (= 2.7.6-7), perl (= 5.34.0-4), perl-base (= 5.34.0-4), perl-modules-5.34 (= 5.34.0-4), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7+b1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.03-1), tar (= 1.34+dfsg-1), ucf (= 3.0043), util-linux (= 2.38-4), util-linux-extra (= 2.38-4), x11-common (= 1:7.7+23), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4), zlib1g-dev (= 1:1.2.11.dfsg-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1640162067" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ gatb-core-dbgsym_1.4.2+dfsg-8_i386.deb -------------------------------------- new Debian package, version 2.0. size 88842316 bytes: control archive=748 bytes. 512 bytes, 12 lines control 508 bytes, 5 lines md5sums Package: gatb-core-dbgsym Source: gatb-core Version: 1.4.2+dfsg-8 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 94193 Depends: gatb-core (= 1.4.2+dfsg-8) Section: debug Priority: optional Description: debug symbols for gatb-core Build-Ids: 125261809ebfa089eaccefa13b8060f27e297350 9dc58ff7df925f4d2073e945f904a774a4b5c1f7 a25aaf4e592afd5731748a25606810c3f6dd80b6 df997c7c9b86d40511c43d0e1e2f1723511e8378 drwxr-xr-x root/root 0 2021-12-22 08:34 ./ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/debug/.build-id/12/ -rw-r--r-- root/root 39355608 2021-12-22 08:34 ./usr/lib/debug/.build-id/12/5261809ebfa089eaccefa13b8060f27e297350.debug drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/debug/.build-id/9d/ -rw-r--r-- root/root 23125440 2021-12-22 08:34 ./usr/lib/debug/.build-id/9d/c58ff7df925f4d2073e945f904a774a4b5c1f7.debug drwxr-xr-x root/root 0 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Package: gatb-core Version: 1.4.2+dfsg-8 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 18238 Depends: libc6 (>= 2.33), libcppunit-1.15-0 (>= 1.15.1), libgcc-s1 (>= 4.2), libhdf5-103-1, libstdc++6 (>= 12), zlib1g (>= 1:1.2.6) Section: science Priority: optional Homepage: https://github.com/GATB/gatb-core Description: Genome Analysis Toolbox with de-Bruijn graph The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. 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These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the static library and the header files of the gatb-core library. drwxr-xr-x root/root 0 2021-12-22 08:34 ./ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/include/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/include/BooPHF/ -rw-r--r-- root/root 33926 2021-12-22 08:34 ./usr/include/BooPHF/BooPHF.h drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/include/gatb/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/include/gatb/bank/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/include/gatb/bank/api/ -rw-r--r-- root/root 2480 2020-04-12 21:15 ./usr/include/gatb/bank/api/IAlphabet.hpp -rw-r--r-- root/root 7592 2020-04-12 21:15 ./usr/include/gatb/bank/api/IBank.hpp -rw-r--r-- root/root 11212 2020-04-12 21:15 ./usr/include/gatb/bank/api/Sequence.hpp drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/include/gatb/bank/impl/ -rw-r--r-- root/root 3647 2020-04-12 21:15 ./usr/include/gatb/bank/impl/AbstractBank.hpp -rw-r--r-- root/root 2453 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2020-04-12 21:15 ./usr/share/doc/libgatbcore-dev/examples/tools/observer1.cpp -rw-r--r-- root/root 1503 2020-04-12 21:15 ./usr/share/doc/libgatbcore-dev/examples/tools/optionsparser1.cpp -rw-r--r-- root/root 749 2020-04-12 21:15 ./usr/share/doc/libgatbcore-dev/examples/tools/optionsparser2.cpp libgatbcore3-dbgsym_1.4.2+dfsg-8_i386.deb ----------------------------------------- new Debian package, version 2.0. size 49852716 bytes: control archive=564 bytes. 415 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libgatbcore3-dbgsym Source: gatb-core Version: 1.4.2+dfsg-8 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 51934 Depends: libgatbcore3 (= 1.4.2+dfsg-8) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libgatbcore3 Build-Ids: d76c66a0b54c923727c6610911f3ab49922e8d5e drwxr-xr-x root/root 0 2021-12-22 08:34 ./ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/debug/.build-id/d7/ -rw-r--r-- root/root 53169640 2021-12-22 08:34 ./usr/lib/debug/.build-id/d7/6c66a0b54c923727c6610911f3ab49922e8d5e.debug drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/share/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-12-22 08:34 ./usr/share/doc/libgatbcore3-dbgsym -> libgatbcore3 libgatbcore3_1.4.2+dfsg-8_i386.deb ---------------------------------- new Debian package, version 2.0. size 1880204 bytes: control archive=1136 bytes. 1067 bytes, 25 lines control 226 bytes, 3 lines md5sums 43 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libgatbcore3 Source: gatb-core Version: 1.4.2+dfsg-8 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 10432 Depends: libc6 (>= 2.33), libgcc-s1 (>= 4.2), libstdc++6 (>= 12) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Description: dynamic library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the dynamic library. drwxr-xr-x root/root 0 2021-12-22 08:34 ./ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 10634940 2021-12-22 08:34 ./usr/lib/i386-linux-gnu/libgatbcore.so.3 drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/share/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-12-22 08:34 ./usr/share/doc/libgatbcore3/ -rw-r--r-- root/root 1714 2021-12-22 08:34 ./usr/share/doc/libgatbcore3/changelog.Debian.gz -rw-r--r-- root/root 34732 2021-12-22 08:34 ./usr/share/doc/libgatbcore3/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [583 B] Get:5 copy:/<>/apt_archive ./ Packages [669 B] Fetched 2215 B in 0s (53.2 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. 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arm64 1.02-1 [34.6 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-1+b6 [103 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b3 [25.8 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b4 [26.7 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B] Get:54 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:55 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:61 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:73 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b2 [171 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b4 [11.9 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b2 [13.5 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b8 [17.0 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1+b1 [11.9 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1+b1 [46.4 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.023+ds-1 [95.0 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.023+ds-1 [97.9 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.23-1 [51.6 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.27-1 [28.2 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b3 [27.2 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b9 [8660 B] Get:89 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1+b1 [13.4 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1+b1 [194 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b4 [74.7 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b3 [19.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1+b1 [34.4 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.23-3 [86.6 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7707 kB in 0s (33.4 MB/s) Selecting previously unselected package readline-common. (Reading database ... 39196 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.1.2-1.2_all.deb ... Unpacking readline-common (8.1.2-1.2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../001-libreadline8_8.1.2-1.2_arm64.deb ... Unpacking libreadline8:arm64 (8.1.2-1.2) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../003-libassuan0_2.5.5-3_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-3) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.35-2_arm64.deb ... Unpacking gpgconf (2.2.35-2) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../005-libsqlite3-0_3.38.5-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.38.5-1) ... Selecting previously unselected package gpg. Preparing to unpack .../006-gpg_2.2.35-2_arm64.deb ... Unpacking gpg (2.2.35-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../007-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../008-libapt-pkg-perl_0.1.40+b1_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../009-libb-hooks-op-check-perl_0.22-1+b4_arm64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b4) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../010-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. 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Preparing to unpack .../021-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../022-libclass-xsaccessor-perl_1.19-3+b8_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b8) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../023-libclone-perl_0.45-1+b2_arm64.deb ... Unpacking libclone-perl (0.45-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../024-libconfig-tiny-perl_2.28-1_all.deb ... Unpacking libconfig-tiny-perl (2.28-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../025-libparams-util-perl_1.102-1+b2_arm64.deb ... Unpacking libparams-util-perl (1.102-1+b2) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../026-libsub-install-perl_0.928-1.1_all.deb ... Unpacking libsub-install-perl (0.928-1.1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../027-libdata-optlist-perl_0.112-1_all.deb ... Unpacking libdata-optlist-perl (0.112-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../028-libsub-exporter-perl_0.988-1_all.deb ... Unpacking libsub-exporter-perl (0.988-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../029-libconst-fast-perl_0.014-1.1_all.deb ... Unpacking libconst-fast-perl (0.014-1.1) ... Selecting previously unselected package libcpanel-json-xs-perl:arm64. Preparing to unpack .../030-libcpanel-json-xs-perl_4.28-1_arm64.deb ... Unpacking libcpanel-json-xs-perl:arm64 (4.28-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../031-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../032-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../033-libiterator-perl_0.03+ds1-1.1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../034-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../035-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../036-liblist-moreutils-xs-perl_0.430-2+b1_arm64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2+b1) ... Selecting previously unselected package liblist-moreutils-perl. 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Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../043-libnet-netmask-perl_2.0001-1_all.deb ... Unpacking libnet-netmask-perl (2.0001-1) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../044-libnetaddr-ip-perl_4.079+dfsg-1+b6_arm64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-1+b6) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../045-libdata-validate-ip-perl_0.30-1_all.deb ... Unpacking libdata-validate-ip-perl (0.30-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../046-libdata-validate-uri-perl_0.07-2_all.deb ... Unpacking libdata-validate-uri-perl (0.07-2) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../047-libdevel-size-perl_0.83-1+b3_arm64.deb ... Unpacking libdevel-size-perl (0.83-1+b3) ... 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Unpacking libio-prompt-tiny-perl (0.003-1) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../059-libipc-run3-perl_0.048-2_all.deb ... Unpacking libipc-run3-perl (0.048-2) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../060-libjson-maybexs-perl_1.004003-1_all.deb ... Unpacking libjson-maybexs-perl (1.004003-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../061-liblist-compare-perl_0.55-1_all.deb ... Unpacking liblist-compare-perl (0.55-1) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../062-liblist-someutils-perl_0.58-1_all.deb ... Unpacking liblist-someutils-perl (0.58-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../063-liblist-utilsby-perl_0.12-1_all.deb ... Unpacking liblist-utilsby-perl (0.12-1) ... Selecting previously unselected package liblzo2-2:arm64. Preparing to unpack .../064-liblzo2-2_2.10-2_arm64.deb ... Unpacking liblzo2-2:arm64 (2.10-2) ... Selecting previously unselected package libmarkdown2:arm64. Preparing to unpack .../065-libmarkdown2_2.2.7-2_arm64.deb ... Unpacking libmarkdown2:arm64 (2.2.7-2) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../066-librole-tiny-perl_2.002004-1_all.deb ... Unpacking librole-tiny-perl (2.002004-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../067-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../068-libmoo-perl_2.005004-3_all.deb ... Unpacking libmoo-perl (2.005004-3) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../069-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../070-libmoox-aliases-perl_0.001006-2_all.deb ... Unpacking libmoox-aliases-perl (0.001006-2) ... Selecting previously unselected package libmouse-perl. Preparing to unpack .../071-libmouse-perl_2.5.10-1+b2_arm64.deb ... Unpacking libmouse-perl (2.5.10-1+b2) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../072-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../073-libsub-identify-perl_0.14-1+b4_arm64.deb ... Unpacking libsub-identify-perl (0.14-1+b4) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../074-libsub-name-perl_0.26-1+b2_arm64.deb ... Unpacking libsub-name-perl (0.26-1+b2) ... Selecting previously unselected package libnamespace-clean-perl. 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Unpacking sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b1) ... Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b4) ... Setting up libcpanel-json-xs-perl:arm64 (4.28-1) ... Setting up libdevel-size-perl (0.83-1+b3) ... Setting up unzip (6.0-26) ... Setting up libsqlite3-0:arm64 (3.38.5-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b4) ... 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Setting up lzip (1.23-3) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b4) ... Setting up libb-hooks-op-check-perl (0.22-1+b4) ... Setting up liblist-moreutils-xs-perl (0.430-2+b1) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... 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Setting up liburi-perl (5.10-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b4) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.1.2-1.2) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up gpgconf (2.2.35-2) ... Setting up gpg (2.2.35-2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b4) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 2426220 Build-Time: 7680 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 64 Job: gatb-core_1.4.2+dfsg-8 Lintian: pass Machine Architecture: arm64 Package: gatb-core Package-Time: 7781 Source-Version: 1.4.2+dfsg-8 Space: 2426220 Status: successful Version: 1.4.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2022-05-31T00:32:15Z Build needed 02:09:41, 2426220k disk space